Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold140
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3130556
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82166 characters in sequence are not A, C, G, or T
File 3 of 20
Found at i:423029 original size:13 final size:14
Alignment explanation
Indices: 423011--423039 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
423001 AGTATTCAAC
423011 AAAAGAAAA-AGAA
1 AAAAGAAAAGAGAA
423024 AAAAGAAAAGAGAA
1 AAAAGAAAAGAGAA
423038 AA
1 AA
423040 GGAATCAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAGAGAA
Found at i:423796 original size:26 final size:26
Alignment explanation
Indices: 423767--423818 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
423757 GAAGAAGAAC
*
423767 AAGAAGAAGAAACAAATT-CAAAGAGA
1 AAGAAGAA-AAAAAAATTACAAAGAGA
* *
423793 AAGAGGAAAAAAAAATTATAAAGAGA
1 AAGAAGAAAAAAAAATTACAAAGAGA
423819 GCAACTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.67, C:0.04, G:0.19, T:0.10
Consensus pattern (26 bp):
AAGAAGAAAAAAAAATTACAAAGAGA
Found at i:424907 original size:15 final size:16
Alignment explanation
Indices: 424889--424927 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
424879 TATTTATTTT
424889 TTAAAATTATTAAA-A
1 TTAAAATTATTAAATA
424904 TTAAAATT-TTAAATA
1 TTAAAATTATTAAATA
424919 TTAAAATTA
1 TTAAAATTA
424928 AAAATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATTATTAAATA
Found at i:424932 original size:15 final size:15
Alignment explanation
Indices: 424889--424943 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
424879 TATTTATTTT
424889 TTAAAATTATTAAA-A
1 TTAAAATTA-TAAATA
*
424904 TTAAAATTTTAAATA
1 TTAAAATTATAAATA
*
424919 TTAAAATTAAAAATA
1 TTAAAATTATAAATA
*
424934 -TAATATTATA
1 TTAAAATTATA
424944 TCAATTGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAAAATTATAAATA
Found at i:425429 original size:3 final size:3
Alignment explanation
Indices: 425417--425460 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
425407 TACATTGCTG
425417 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
425461 GATCTGAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:426378 original size:29 final size:31
Alignment explanation
Indices: 426337--426401 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
426327 TCGATATCAT
*
426337 AATT-TATATGAATATTTTAAA-AAAT-AAA
1 AATTATATATGAATATTTAAAAGAAATAAAA
*
426365 AATTATATATGAATCTTTAAAAGAAATAAAA
1 AATTATATATGAATATTTAAAAGAAATAAAA
426396 AATTAT
1 AATTAT
426402 GGGTGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 4 0.12
29 15 0.47
30 4 0.12
31 9 0.28
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (31 bp):
AATTATATATGAATATTTAAAAGAAATAAAA
Found at i:427544 original size:2 final size:2
Alignment explanation
Indices: 427537--427566 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
427527 ACATAAACTG
427537 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
427567 AAGAGCAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:428798 original size:3 final size:3
Alignment explanation
Indices: 428790--428829 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
428780 ATGATCTAAT
428790 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
428830 GTCTCATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:429915 original size:2 final size:2
Alignment explanation
Indices: 429908--429935 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
429898 AAGTATCATG
429908 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
429936 ACGTTTGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:431086 original size:13 final size:12
Alignment explanation
Indices: 431068--431097 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
431058 ATTTAATTTC
431068 TAAAAAAAAAATT
1 TAAAAAAAAAA-T
431081 TAAAAAAAAAAT
1 TAAAAAAAAAAT
431093 TAAAA
1 TAAAA
431098 TGAAATTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
TAAAAAAAAAAT
Found at i:432011 original size:19 final size:19
Alignment explanation
Indices: 431988--432033 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
431978 TTTTAATTTT
431988 TTTAAAAATTTTATATTAAA
1 TTTAAAAATTTT-TATTAAA
**
432008 -TTAATTATTTTTATTAAA
1 TTTAAAAATTTTTATTAAA
432026 TTTAAAAA
1 TTTAAAAA
432034 AATATTATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTAAAAATTTTTATTAAA
Found at i:432717 original size:22 final size:20
Alignment explanation
Indices: 432671--432720 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
432661 GAATACATAT
* *
432671 AATAATATTTTAAATTTATT
1 AATAATATTTAAAATTTATC
*
432691 TATAATATTTAAAAATTTTATC
1 AATAATATTT-AAAA-TTTATC
432713 AATAATAT
1 AATAATAT
432721 ATATACATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 9 0.38
21 3 0.12
22 12 0.50
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
AATAATATTTAAAATTTATC
Found at i:433864 original size:22 final size:20
Alignment explanation
Indices: 433824--433867 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
433814 ATATTTTTTT
433824 AAATTTTTTTTATATATTTA
1 AAATTTTTTTTATATATTTA
*
433844 AAATTTTATATTTTTATATTTA
1 AAATTTT-T-TTTATATATTTA
433866 AA
1 AA
433868 TTATAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 1 0.05
22 13 0.62
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
AAATTTTTTTTATATATTTA
Found at i:433876 original size:22 final size:23
Alignment explanation
Indices: 433831--433885 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
433821 TTTAAATTTT
*
433831 TTTTATATATTTAAAATTTTATA
1 TTTTATATATTTAAAATTTAATA
433854 TTTT-TATATTT-AAATTATAATA
1 TTTTATATATTTAAAATT-TAATA
433876 -TTTATA-ATTT
1 TTTTATATATTT
433886 TATAATATCG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 12 0.41
22 13 0.45
23 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTATATATTTAAAATTTAATA
Found at i:433887 original size:22 final size:21
Alignment explanation
Indices: 433820--433887 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 21
433810 GTTAATATTT
*
433820 TTTTAAATTT--TTTTTATATA
1 TTTTAAATTTAATATTTATA-A
* * *
433840 TTTAAAATTTTATATTT-TTA
1 TTTTAAATTTAATATTTATAA
433860 TATTTAAATTATAATATTTATAA
1 T-TTTAAATT-TAATATTTATAA
433883 TTTTA
1 TTTTA
433888 TAATATCGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
20 11 0.30
21 8 0.22
22 15 0.41
23 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTAAATTTAATATTTATAA
Found at i:439701 original size:2 final size:2
Alignment explanation
Indices: 439696--439731 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
439686 TGTGTGTGTG
439696 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
439732 CACACACACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:440555 original size:22 final size:21
Alignment explanation
Indices: 440510--440567 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
440500 TTAATTATCA
* *
440510 TTATTTATATA-TAT-ATAAT
1 TTATTTATAAATTATAAAAAT
440529 TTATTTATAAATTATAAAAAT
1 TTATTTATAAATTATAAAAAT
440550 TATATTTATAAATTATAA
1 T-TATTTATAAATTATAA
440568 TTAAATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 10 0.29
20 3 0.09
21 5 0.15
22 16 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATTTATAAATTATAAAAAT
Found at i:441196 original size:2 final size:2
Alignment explanation
Indices: 441189--441228 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
441179 ACTAACCAAG
441189 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
441229 CTTCCTTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:441346 original size:13 final size:13
Alignment explanation
Indices: 441330--441359 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
441320 ATTTTTTTTA
441330 AATATTTATATTT
1 AATATTTATATTT
441343 AATATTTATATTT
1 AATATTTATATTT
441356 AATA
1 AATA
441360 AATTTTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATTTATATTT
Found at i:441923 original size:2 final size:2
Alignment explanation
Indices: 441916--441943 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
441906 GTGAAATCTG
441916 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
441944 AATTTTCGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:447308 original size:15 final size:15
Alignment explanation
Indices: 447288--447322 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
447278 GATTTGAGTA
* *
447288 TAAATTTATTTATTT
1 TAAATTAATTTAATT
447303 TAAATTAATTTAATT
1 TAAATTAATTTAATT
447318 TAAAT
1 TAAAT
447323 AATAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAATTAATTTAATT
Found at i:447382 original size:45 final size:41
Alignment explanation
Indices: 447286--447382 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 41
447276 CAGATTTGAG
*
447286 TATAAATTTATTTATTTTAAATTAATTTAATTTAAATAATAA
1 TATAAATTT-TTTATTTTAAATTAATGTAATTTAAATAATAA
* * * *
447328 AATATATTTTTTATTTTAAATTTTTAATAGTATTTTAAATAATTA
1 TATAAATTTTTTATTTTAAA---TTAAT-GTAATTTAAATAATAA
447373 TATAAATTTT
1 TATAAATTTT
447383 CAAGTCAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
41 11 0.25
42 7 0.16
44 5 0.11
45 21 0.48
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (41 bp):
TATAAATTTTTTATTTTAAATTAATGTAATTTAAATAATAA
Found at i:447578 original size:18 final size:17
Alignment explanation
Indices: 447552--447585 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
447542 TGTCTGGTGA
447552 TTTTTCTTTTTTTTTTT
1 TTTTTCTTTTTTTTTTT
447569 TTTTTGCTTTTTTTTTT
1 TTTTT-CTTTTTTTTTT
447586 CCCTCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTT
Found at i:447908 original size:23 final size:24
Alignment explanation
Indices: 447876--447933 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
447866 ATGGATTTAT
*
447876 ATTTAATGTAATGATTAT-ATATAA
1 ATTT-ATGTAATGATTATAAAATAA
*
447900 ATTTATGT-ATTATTATAAAATAA
1 ATTTATGTAATGATTATAAAATAA
*
447923 AATTATGTAAT
1 ATTTATGTAAT
447934 TTTGTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 7 0.24
23 16 0.55
24 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (24 bp):
ATTTATGTAATGATTATAAAATAA
Found at i:448149 original size:16 final size:16
Alignment explanation
Indices: 448131--448185 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
448121 ATTTTAGATA
448131 TAAAATGAAAAAAATA-
1 TAAAAT-AAAAAAATAT
* *
448147 TAATATAATAAAATAT
1 TAAAATAAAAAAATAT
448163 TAAAATAATAAAAATAT
1 TAAAATAA-AAAAATAT
448180 TAAAAT
1 TAAAAT
448186 TTATATATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
15 8 0.24
16 12 0.36
17 13 0.39
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
TAAAATAAAAAAATAT
Found at i:448157 original size:8 final size:8
Alignment explanation
Indices: 448130--448185 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
448120 AATTTTAGAT
448130 ATAAAATGA
1 ATAAAAT-A
*
448139 AAAAAAT-
1 ATAAAATA
*
448146 ATAATATA
1 ATAAAATA
448154 ATAAAATA
1 ATAAAATA
*
448162 TTAAAATA
1 ATAAAATA
448170 ATAAAAATA
1 AT-AAAATA
*
448179 TTAAAAT
1 ATAAAAT
448186 TTATATATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
7 5 0.13
8 20 0.53
9 13 0.34
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.29
Consensus pattern (8 bp):
ATAAAATA
Found at i:448176 original size:17 final size:17
Alignment explanation
Indices: 448131--448185 Score: 71
Period size: 16 Copynumber: 3.4 Consensus size: 17
448121 ATTTTAGATA
448131 TAAAATGAA-AAAAATA-
1 TAAAAT-AATAAAAATAT
*
448147 TAATATAAT-AAAATAT
1 TAAAATAATAAAAATAT
448163 TAAAATAATAAAAATAT
1 TAAAATAATAAAAATAT
448180 TAAAAT
1 TAAAAT
448186 TTATATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
15 8 0.24
16 13 0.38
17 13 0.38
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAATAATAAAAATAT
Found at i:448230 original size:20 final size:20
Alignment explanation
Indices: 448207--448255 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
448197 ATGAATTATT
*
448207 AATATATTAA-ATTTTATATA
1 AATATATTAATATCTTA-ATA
448227 AATATA-TAATATCTTAATA
1 AATATATTAATATCTTAATA
448246 AATATGATTA
1 AATAT-ATTA
448256 TAATATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.44
20 12 0.48
21 2 0.08
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
AATATATTAATATCTTAATA
Found at i:449572 original size:15 final size:14
Alignment explanation
Indices: 449537--449589 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
449527 TGTAAATGTG
* *
449537 TATATATTTATAAA
1 TATATATTTTTATA
*
449551 TTATATATTTTTATT
1 -TATATATTTTTATA
*
449566 TATTATAATTTTATA
1 TA-TATATTTTTATA
449581 TATATATTT
1 TATATATTT
449590 AAATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATATTTTTATA
Found at i:451178 original size:21 final size:20
Alignment explanation
Indices: 451154--451206 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
451144 TACGGATTGA
* *
451154 ATTATTTATTTTATCAAAATT
1 ATTATTTATTTAAT-AAAAAT
*
451175 ATTATTTAATTAATAAAAAT
1 ATTATTTATTTAATAAAAAT
451195 ATT-TTTATTTAA
1 ATTATTTATTTAA
451207 ATTAAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 8 0.29
20 8 0.29
21 12 0.43
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTATTTATTTAATAAAAAT
Found at i:451374 original size:2 final size:2
Alignment explanation
Indices: 451367--451398 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
451357 GAAACAAATG
451367 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
451399 TGGCGATCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:453689 original size:28 final size:27
Alignment explanation
Indices: 453656--453709 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
453646 TAATATCGAA
453656 TTTAATTAAAATATAATATAAA-ATATTT
1 TTTAA-TAAAA-ATAATATAAATATATTT
453684 TTTAATAAAAATAATATAAATATATT
1 TTTAATAAAAATAATATAAATATATT
453710 AAATTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 10 0.40
27 10 0.40
28 5 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
TTTAATAAAAATAATATAAATATATTT
Found at i:455051 original size:29 final size:29
Alignment explanation
Indices: 455018--455074 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
455008 TTTTTTAAAA
*
455018 AAATATTTATATTTGTTTAATATATATTT
1 AAATATTTATATTTGTTCAATATATATTT
455047 AAATATTTATATTTGTTCAATATATATT
1 AAATATTTATATTTGTTCAATATATATT
455075 CAAGATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (29 bp):
AAATATTTATATTTGTTCAATATATATTT
Found at i:457622 original size:26 final size:26
Alignment explanation
Indices: 457593--457646 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
457583 CTCACTATTT
**
457593 TATCACTTTCCAATAATTATCTCTCC
1 TATCACTCCCCAATAATTATCTCTCC
457619 TATCACTCCCCAATAATTATCTCTCC
1 TATCACTCCCCAATAATTATCTCTCC
457645 TA
1 TA
457647 ATAAATCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.39
Consensus pattern (26 bp):
TATCACTCCCCAATAATTATCTCTCC
Found at i:457898 original size:39 final size:38
Alignment explanation
Indices: 457844--457952 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 38
457834 AAATCTTAAT
* *
457844 CAAATC-AATTAGAATTTGATTTCGAATATCTTAACTGC
1 CAAATCAAAATAGAATTTGATTT-GAATATCTTAACCGC
* * *
457882 CAAATTAAAATAGAATTTGATTTGATATGTCCTAACCGC
1 CAAATCAAAATAGAATTTGATTTGA-ATATCTTAACCGC
457921 CAAATCAAAATAGAATTTGATTTGGAA-ATCTT
1 CAAATCAAAATAGAATTTGATTT-GAATATCTT
457953 TTTTTTTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
38 10 0.17
39 48 0.80
40 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (38 bp):
CAAATCAAAATAGAATTTGATTTGAATATCTTAACCGC
Found at i:463495 original size:8 final size:9
Alignment explanation
Indices: 463474--463513 Score: 55
Period size: 10 Copynumber: 4.3 Consensus size: 9
463464 AAACACGATA
463474 AAAATATTAT
1 AAAATA-TAT
463484 AAAATA-AT
1 AAAATATAT
463492 AAAATATAT
1 AAAATATAT
463501 AAATATATAT
1 AAA-ATATAT
463511 AAA
1 AAA
463514 TTGTCATGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.29
9 5 0.18
10 15 0.54
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATATAT
Found at i:463495 original size:18 final size:19
Alignment explanation
Indices: 463474--463513 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
463464 AAACACGATA
463474 AAAATATTATAAA-ATA-AT
1 AAAATA-TATAAATATATAT
463492 AAAATATATAAATATATAT
1 AAAATATATAAATATATAT
463511 AAA
1 AAA
463514 TTGTCATGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 9 0.45
19 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATATATAAATATATAT
Found at i:463514 original size:10 final size:10
Alignment explanation
Indices: 463475--463514 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 10
463465 AACACGATAA
463475 AAATAT-TAT
1 AAATATATAT
463484 AAA-ATA-AT
1 AAATATATAT
463492 AAA-ATATAT
1 AAATATATAT
463501 AAATATATAT
1 AAATATATAT
463511 AAAT
1 AAAT
463515 TGTCATGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 10 0.36
9 8 0.29
10 10 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAATATATAT
Found at i:470615 original size:6 final size:6
Alignment explanation
Indices: 470604--470641 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
470594 TTTTTGATGA
*
470604 TTTCTT TTTCTT TTTCTT TTCCTCT TTTC-T TTTCTT TT
1 TTTCTT TTTCTT TTTCTT TTTCT-T TTTCTT TTTCTT TT
470642 CCTTCGTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 5 0.18
6 19 0.68
7 4 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTCTT
Found at i:470638 original size:18 final size:19
Alignment explanation
Indices: 470609--470644 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
470599 GATGATTTCT
470609 TTTTCTTTTTCTTTTCCTC
1 TTTTCTTTTTCTTTTCCTC
470628 TTTTC-TTTTCTTTTCCT
1 TTTTCTTTTTCTTTTCCT
470645 TCGTTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCTTTTTCTTTTCCTC
Found at i:470866 original size:15 final size:17
Alignment explanation
Indices: 470837--470877 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
470827 TAAATATGAA
*
470837 TAATCATAAT-TTTTAAT
1 TAAT-ATAATGTTTAAAT
470854 TAA-ATAATGTTTAAAT
1 TAATATAATGTTTAAAT
470870 TAATATAA
1 TAATATAA
470878 AAATATTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.24
16 9 0.43
17 7 0.33
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TAATATAATGTTTAAAT
Found at i:472221 original size:15 final size:16
Alignment explanation
Indices: 472201--472240 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
472191 AATATAAGAA
472201 AAAATTATAA-ATATT
1 AAAATTATAATATATT
*
472216 AAAATTAAAATATATT
1 AAAATTATAATATATT
472232 AAATATTAT
1 AAA-ATTAT
472241 TTTTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATTATAATATATT
Found at i:472448 original size:25 final size:22
Alignment explanation
Indices: 472407--472465 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
472397 TTAATATTTA
472407 TTAAA-AATAAAAATAATTTATTAT
1 TTAAATAATAAAAATAA-TTA--AT
**
472431 TTAAATAATAAATCTAATTAAT
1 TTAAATAATAAAAATAATTAAT
*
472453 TTAAATTATAAAA
1 TTAAATAATAAAA
472466 TTTTTTATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 13 0.43
24 8 0.27
25 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAAATAATAAAAATAATTAAT
Found at i:472492 original size:20 final size:20
Alignment explanation
Indices: 472469--472511 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
472459 TATAAAATTT
472469 TTTAT-CCAATTATAAATAAA
1 TTTATACCAATTA-AAATAAA
*
472489 TTTATAACCAATTAAATTAAA
1 TTTAT-ACCAATTAAAATAAA
472510 TT
1 TT
472512 CGAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 8 0.40
22 7 0.35
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTATACCAATTAAAATAAA
Found at i:474206 original size:2 final size:2
Alignment explanation
Indices: 474199--474227 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
474189 CCAAGTTATC
474199 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
474228 TAAATCCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:474764 original size:18 final size:19
Alignment explanation
Indices: 474734--474778 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 19
474724 ATATTTTCTT
474734 ATTA-TTTATAATAATAA-A
1 ATTATTTTATAAT-ATAATA
474752 ATTATTTTA-AATATAATA
1 ATTATTTTATAATATAATA
474770 ATTAATTTT
1 ATT-ATTTT
474779 TGATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.17
18 11 0.46
19 9 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTATTTTATAATATAATA
Found at i:475141 original size:21 final size:20
Alignment explanation
Indices: 475095--475144 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
475085 TTTTATTATA
*
475095 TAAT-AAATAATTAAAATAT
1 TAATAAAATTATTAAAATAT
475114 T--TAAAATTATTAAAAATAT
1 TAATAAAATTATT-AAAATAT
475133 TAATAAAATTAT
1 TAATAAAATTAT
475145 CACTCCTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.04
18 7 0.27
19 9 0.35
21 9 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TAATAAAATTATTAAAATAT
Found at i:475390 original size:2 final size:2
Alignment explanation
Indices: 475385--475417 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
475375 ATTATTGAAT
475385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
475418 CCTCTTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:475568 original size:18 final size:18
Alignment explanation
Indices: 475545--475579 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
475535 GAAAACTGAG
475545 CTTTCTTTTTCTTTCTCA
1 CTTTCTTTTTCTTTCTCA
475563 CTTTCTTTTTCTTTCTC
1 CTTTCTTTTTCTTTCTC
475580 CGTGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.69
Consensus pattern (18 bp):
CTTTCTTTTTCTTTCTCA
Found at i:476827 original size:24 final size:24
Alignment explanation
Indices: 476795--476840 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
476785 GGCAGTTGCT
476795 GTGGCACTGATTATGTGAAAGTCC
1 GTGGCACTGATTATGTGAAAGTCC
476819 GTGGCACTGATTATGTGAAAGT
1 GTGGCACTGATTATGTGAAAGT
476841 GCATTTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (24 bp):
GTGGCACTGATTATGTGAAAGTCC
Found at i:476981 original size:20 final size:20
Alignment explanation
Indices: 476956--476996 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
476946 TGGAAAATCA
476956 TGTTTAATCAAATAAGTTGC
1 TGTTTAATCAAATAAGTTGC
476976 TGTTTAATCAAATAAGTTGC
1 TGTTTAATCAAATAAGTTGC
476996 T
1 T
476997 AATATCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTTTAATCAAATAAGTTGC
Found at i:483684 original size:2 final size:2
Alignment explanation
Indices: 483677--483719 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
483667 CGAACTTCCC
483677 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
483719 C
1 C
483720 ATGTGTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:485261 original size:15 final size:15
Alignment explanation
Indices: 485241--485284 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
485231 TTAGGGCAGG
485241 CTACAAACACCAAAC
1 CTACAAACACCAAAC
485256 CTACAAACACCAAAC
1 CTACAAACACCAAAC
485271 CTACAAACACCAAA
1 CTACAAACACCAAA
485285 AGTCTCATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.55, C:0.39, G:0.00, T:0.07
Consensus pattern (15 bp):
CTACAAACACCAAAC
Found at i:485664 original size:17 final size:18
Alignment explanation
Indices: 485644--485687 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
485634 CAAATAATTT
485644 TTATTTTATTTTTT-TAA
1 TTATTTTATTTTTTATAA
485661 TTA-TTTATTTTTTATAA
1 TTATTTTATTTTTTATAA
*
485678 -AATTTTATTT
1 TTATTTTATTT
485688 CAATTTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTATTTTATTTTTTATAA
Found at i:485682 original size:16 final size:17
Alignment explanation
Indices: 485646--485687 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
485636 AATAATTTTT
*
485646 ATTTTATTTTTTTAATT
1 ATTTTATTTTTTTAATA
485663 A-TTTATTTTTTATAA-A
1 ATTTTATTTTTT-TAATA
485679 ATTTTATTT
1 ATTTTATTT
485688 CAATTTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTTATTTTTTTAATA
Found at i:487175 original size:21 final size:21
Alignment explanation
Indices: 487145--487197 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
487135 TATTTTTATT
*
487145 TAAAT-TTAAT-TATAAATATA
1 TAAATATTAATATAAAAATA-A
487165 TAAATATTAATATAAAAATAA
1 TAAATATTAATATAAAAATAA
*
487186 TAAATATGAATA
1 TAAATATTAATA
487198 ATTTAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 5 0.17
21 17 0.59
22 7 0.24
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
TAAATATTAATATAAAAATAA
Found at i:487652 original size:17 final size:18
Alignment explanation
Indices: 487624--487657 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
487614 TAATTTTTAA
487624 TTTATGTTTAAATAAAAG
1 TTTATGTTTAAATAAAAG
487642 TTTAT-TTTAAATAAAA
1 TTTATGTTTAAATAAAA
487658 ATTTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
TTTATGTTTAAATAAAAG
Found at i:487711 original size:30 final size:30
Alignment explanation
Indices: 487669--487774 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 30
487659 TTTTATTTAT
*
487669 GTTAATAATTTATTTAAGTATAAATGA-AA
1 GTTAAAAATTTATTTAAGTATAAATGATAA
* *
487698 GATTAAGAATTTATTT-AGATATAAATAATAA
1 G-TTAAAAATTTATTTAAG-TATAAATGATAA
*
487729 GTTAAAAATTTATTTAAATATAAATG-TAA
1 GTTAAAAATTTATTTAAGTATAAATGATAA
* * *
487758 ATTTAATATTTATTTAA
1 GTTAAAAATTTATTTAA
487775 AATGATGAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
29 20 0.31
30 41 0.63
31 4 0.06
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (30 bp):
GTTAAAAATTTATTTAAGTATAAATGATAA
Found at i:488302 original size:5 final size:6
Alignment explanation
Indices: 488287--488319 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
488277 TGGTTCTCTG
488287 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
488320 CCCACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:488733 original size:22 final size:23
Alignment explanation
Indices: 488696--488756 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
488686 ATAATAAAAC
* *
488696 ATAATATTTTATATTAATATTTAT
1 ATAATTTTTTATATTAA-ATTTAA
488720 AT-ATTTTTTA-ATTAAATTTAA
1 ATAATTTTTTATATTAAATTTAA
*
488741 ATAATTTTTTTTATTA
1 ATAATTTTTTATATTA
488757 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 7 0.22
22 12 0.38
23 11 0.34
24 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATAATTTTTTATATTAAATTTAA
Found at i:488749 original size:21 final size:23
Alignment explanation
Indices: 488696--488766 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 23
488686 ATAATAAAAC
*
488696 ATAATATTTTATATTAATATTTAT
1 ATAAT-TTTTATATTAATATTTAA
*
488720 ATATTTTTTA-ATTAA-ATTTAA
1 ATAATTTTTATATTAATATTTAA
* *
488741 ATAATTTTT-T-TTATTATTAAA
1 ATAATTTTTATATTAATATTTAA
488762 ATAAT
1 ATAAT
488767 AATTTAAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.08
21 23 0.57
22 5 0.12
23 5 0.12
24 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
ATAATTTTTATATTAATATTTAA
Found at i:494737 original size:22 final size:23
Alignment explanation
Indices: 494690--494740 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
494680 AAAGATTAAG
**
494690 AATTTATTTGGATATAAATTATA
1 AATTTATTTAAATATAAATTATA
494713 AATTTATTTAAATATAAA-TATA
1 AATTTATTTAAATATAAATTATA
494735 AATTTA
1 AATTTA
494741 ATATTTATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
AATTTATTTAAATATAAATTATA
Found at i:505637 original size:19 final size:20
Alignment explanation
Indices: 505613--505650 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
505603 TAGGCATGCT
505613 ACAAA-CCCAAACCTACAAC
1 ACAAACCCCAAACCTACAAC
505632 ACAAACCCCAAACCTACAA
1 ACAAACCCCAAACCTACAA
505651 ATCAAAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.53, C:0.42, G:0.00, T:0.05
Consensus pattern (20 bp):
ACAAACCCCAAACCTACAAC
Found at i:507572 original size:20 final size:20
Alignment explanation
Indices: 507541--507588 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
507531 TTTATTTTAA
507541 ATGAAT-TATAAATATATAAAT
1 ATGAATATA-AAATA-ATAAAT
*
507562 ATTAATATAAAATAATAAAT
1 ATGAATATAAAATAATAAAT
507582 ATGAATA
1 ATGAATA
507589 GTTAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 12 0.50
21 10 0.42
22 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
ATGAATATAAAATAATAAAT
Found at i:508056 original size:17 final size:17
Alignment explanation
Indices: 508034--508066 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
508024 ATGTTTAAAA
*
508034 AATAAAAGTTTTATTTT
1 AATAAAAATTTTATTTT
508051 AATAAAAATTTTATTT
1 AATAAAAATTTTATTT
508067 ATGTTAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
AATAAAAATTTTATTTT
Found at i:508712 original size:7 final size:6
Alignment explanation
Indices: 508696--508725 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
508686 GGTTTCTCGG
508696 TTTTTA TTTTTA TTTTTA TTTTTAA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTT-A TTTTT
508726 TTTCCCACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:516372 original size:25 final size:22
Alignment explanation
Indices: 516343--516391 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
516333 AATATTTTTT
516343 ATTTTTATAATTAAATTTAAATAAA
1 ATTTTTATAATT--A-TTAAATAAA
*
516368 ATTTTTTTAATTATTAAATAAA
1 ATTTTTATAATTATTAAATAAA
516390 AT
1 AT
516392 ATGAGCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 1 0.04
25 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTTTATAATTATTAAATAAA
Found at i:517709 original size:24 final size:24
Alignment explanation
Indices: 517677--517722 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
517667 GGCAGTTGCT
517677 GTGGCACTGATTATGTGAAAGTCC
1 GTGGCACTGATTATGTGAAAGTCC
517701 GTGGCACTGATTATGTGAAAGT
1 GTGGCACTGATTATGTGAAAGT
517723 GCATTTTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (24 bp):
GTGGCACTGATTATGTGAAAGTCC
Found at i:517863 original size:20 final size:20
Alignment explanation
Indices: 517838--517878 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
517828 TGGAAAATCA
517838 TGTTTAATCAAATAAGTTGC
1 TGTTTAATCAAATAAGTTGC
517858 TGTTTAATCAAATAAGTTGC
1 TGTTTAATCAAATAAGTTGC
517878 T
1 T
517879 AATATCTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTTTAATCAAATAAGTTGC
Found at i:524563 original size:2 final size:2
Alignment explanation
Indices: 524556--524602 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
524546 CGAACTTCCC
524556 CT CT CT CT CT CT CT CT CT CT C- CT C- CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
524596 CT CT CT C
1 CT CT CT C
524603 ATGTGTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 41 0.95
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:526145 original size:15 final size:15
Alignment explanation
Indices: 526125--526168 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
526115 TTAGGGCAGG
526125 CTACAAACACCAAAC
1 CTACAAACACCAAAC
526140 CTACAAACACCAAAC
1 CTACAAACACCAAAC
526155 CTACAAACACCAAA
1 CTACAAACACCAAA
526169 AGTCTCATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.55, C:0.39, G:0.00, T:0.07
Consensus pattern (15 bp):
CTACAAACACCAAAC
Found at i:526557 original size:15 final size:15
Alignment explanation
Indices: 526526--526573 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
526516 TATCAAATAA
526526 TTTTT-ATTTTTATT
1 TTTTTAATTTTTATT
526540 TTTTTAATTATTTATT
1 TTTTTAATT-TTTATT
*
526556 TTTTATAAAATTTTATT
1 TTTT-T-AATTTTTATT
526573 T
1 T
526574 CAATTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 5 0.17
15 3 0.10
16 10 0.34
17 8 0.28
18 3 0.10
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTAATTTTTATT
Found at i:528057 original size:21 final size:21
Alignment explanation
Indices: 528027--528079 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
528017 TATTTTTATT
*
528027 TAAAT-TTAAT-TATAAATATA
1 TAAATATTAATATAAAAATA-A
528047 TAAATATTAATATAAAAATAA
1 TAAATATTAATATAAAAATAA
*
528068 TAAATATGAATA
1 TAAATATTAATA
528080 ATTTAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 5 0.17
21 17 0.59
22 7 0.24
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
TAAATATTAATATAAAAATAA
Found at i:528534 original size:17 final size:18
Alignment explanation
Indices: 528506--528539 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
528496 TAATTTTTAA
528506 TTTATGTTTAAATAAAAG
1 TTTATGTTTAAATAAAAG
528524 TTTAT-TTTAAATAAAA
1 TTTATGTTTAAATAAAA
528540 ATTTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
TTTATGTTTAAATAAAAG
Found at i:528593 original size:30 final size:30
Alignment explanation
Indices: 528551--528656 Score: 110
Period size: 30 Copynumber: 3.6 Consensus size: 30
528541 TTTTATTTAT
*
528551 GTTAATAATTTATTTAAGTATAAATGA-AA
1 GTTAAAAATTTATTTAAGTATAAATGATAA
* *
528580 GATTAAGAATTTATTT-AGATATAAATAATAA
1 G-TTAAAAATTTATTTAAG-TATAAATGATAA
*
528611 GTTAAAAATTTATTTAAATATAAATG-TAA
1 GTTAAAAATTTATTTAAGTATAAATGATAA
* * *
528640 ATTTAATATTTATTTAA
1 GTTAAAAATTTATTTAA
528657 AATGATGAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
29 20 0.31
30 41 0.63
31 4 0.06
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (30 bp):
GTTAAAAATTTATTTAAGTATAAATGATAA
Found at i:529184 original size:5 final size:6
Alignment explanation
Indices: 529169--529201 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
529159 TGGTTCTCTG
529169 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
529202 CCCACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:529615 original size:22 final size:23
Alignment explanation
Indices: 529578--529638 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
529568 ATAATAAAAC
* *
529578 ATAATATTTTATATTAATATTTAT
1 ATAATTTTTTATATTAA-ATTTAA
529602 AT-ATTTTTTA-ATTAAATTTAA
1 ATAATTTTTTATATTAAATTTAA
*
529623 ATAATTTTTTTTATTA
1 ATAATTTTTTATATTA
529639 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 7 0.22
22 12 0.38
23 11 0.34
24 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATAATTTTTTATATTAAATTTAA
Found at i:529631 original size:21 final size:23
Alignment explanation
Indices: 529578--529648 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 23
529568 ATAATAAAAC
*
529578 ATAATATTTTATATTAATATTTAT
1 ATAAT-TTTTATATTAATATTTAA
*
529602 ATATTTTTTA-ATTAA-ATTTAA
1 ATAATTTTTATATTAATATTTAA
* *
529623 ATAATTTTT-T-TTATTATTAAA
1 ATAATTTTTATATTAATATTTAA
529644 ATAAT
1 ATAAT
529649 AATTTAAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.08
21 23 0.57
22 5 0.12
23 5 0.12
24 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
ATAATTTTTATATTAATATTTAA
Found at i:535565 original size:17 final size:18
Alignment explanation
Indices: 535520--535555 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
535510 TAATTTATGC
*
535520 TTAAATA-AAAGTTTATT
1 TTAAATACAAATTTTATT
535537 TTAAATACAAATTTTATT
1 TTAAATACAAATTTTATT
535555 T
1 T
535556 AAGTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
TTAAATACAAATTTTATT
Found at i:535624 original size:22 final size:23
Alignment explanation
Indices: 535577--535627 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
535567 AAAGATTAAG
**
535577 AATTTATTTGGATATAAATTATA
1 AATTTATTTAAATATAAATTATA
535600 AATTTATTTAAATATAAA-TATA
1 AATTTATTTAAATATAAATTATA
535622 AATTTA
1 AATTTA
535628 ATATTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
AATTTATTTAAATATAAATTATA
Found at i:543599 original size:18 final size:17
Alignment explanation
Indices: 543578--543611 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
543568 TAAATTTTAA
543578 TTTATGCTTAAATAAAAG
1 TTTAT-CTTAAATAAAAG
*
543596 TTTATTTTAAATAAAA
1 TTTATCTTAAATAAAA
543612 ATTTTGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (17 bp):
TTTATCTTAAATAAAAG
Found at i:544652 original size:38 final size:38
Alignment explanation
Indices: 544608--544688 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 38
544598 TATTAAATTC
544608 AATTTGAATTTGAT-CTTGAT-AGTAAAGAATTCAATTTG
1 AATTTG-A-TTGATACTTGATGAGTAAAGAATTCAATTTG
* * *
544646 AATTTGATTGGTAGTTGATGATTAAAGAATTCAATTTG
1 AATTTGATTGATACTTGATGAGTAAAGAATTCAATTTG
544684 AATTT
1 AATTT
544689 TGCTAGTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 4 0.11
37 6 0.16
38 28 0.74
ACGTcount: A:0.36, C:0.04, G:0.17, T:0.43
Consensus pattern (38 bp):
AATTTGATTGATACTTGATGAGTAAAGAATTCAATTTG
Found at i:555840 original size:33 final size:33
Alignment explanation
Indices: 555798--555865 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
555788 GGATTCTAAG
555798 ATGTCTCACTTTATATATCGAGATTTGATTACT
1 ATGTCTCACTTTATATATCGAGATTTGATTACT
*
555831 ATGTCTCACTTTATATATTGAGATTTGATTACT
1 ATGTCTCACTTTATATATCGAGATTTGATTACT
555864 AT
1 AT
555866 TTCTGTGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (33 bp):
ATGTCTCACTTTATATATCGAGATTTGATTACT
Found at i:561760 original size:2 final size:2
Alignment explanation
Indices: 561753--561788 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
561743 AGAACTCTGT
561753 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
561789 ATGGTGCTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:563379 original size:2 final size:2
Alignment explanation
Indices: 563372--563407 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
563362 AAAGCCGCAC
*
563372 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
563408 CACGCGTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:574968 original size:29 final size:29
Alignment explanation
Indices: 574936--575042 Score: 73
Period size: 33 Copynumber: 3.7 Consensus size: 29
574926 CGATTATATA
574936 ATAAAATATGAATTATTAATTAAAATTAT
1 ATAAAATATGAATTATTAATTAAAATTAT
* *
574965 ATAAAA-ATCAATTCATT--TTAAAA--AA
1 ATAAAATATGAATT-ATTAATTAAAATTAT
* *
574990 ATATAATATGAA-TATATAATTATTTTAAATTTT
1 ATAAAATATGAATTAT-TAATTA----AAATTAT
*
575023 ATAAAATATAAATTATTAAT
1 ATAAAATATGAATTATTAAT
575043 ATATTAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
24 2 0.03
25 8 0.14
26 4 0.07
27 9 0.16
28 6 0.10
29 9 0.16
31 3 0.05
33 14 0.24
34 3 0.05
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (29 bp):
ATAAAATATGAATTATTAATTAAAATTAT
Found at i:575030 original size:27 final size:27
Alignment explanation
Indices: 575000--575085 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 27
574990 ATATAATATG
575000 AATATATAATTATTTTAAATTTTATAA
1 AATATATAATTATTTTAAATTTTATAA
* *
575027 AATATAAATTATTAATATATTAAAATTTATAA
1 AATAT--ATAATT-AT-T-TTAAATTTTATAA
* *
575059 AA-ATATAAAATATTTTAAATATTATAA
1 AATATAT-AATTATTTTAAATTTTATAA
575086 TTTAATATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
27 16 0.34
28 1 0.02
29 9 0.19
30 4 0.09
31 3 0.06
32 14 0.30
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
AATATATAATTATTTTAAATTTTATAA
Found at i:575077 original size:18 final size:17
Alignment explanation
Indices: 575019--575077 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
575009 TTATTTTAAA
575019 TTTTATAAAATAT-AAAT
1 TTTTA-AAAATATAAAAT
* *
575036 TATT-AATATATTAAAAT
1 TTTTAAAAATA-TAAAAT
*
575053 TTATAAAAATATAAAAT
1 TTTTAAAAATATAAAAT
575070 ATTTTAAA
1 -TTTTAAA
575078 TATTATAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
15 5 0.16
16 1 0.03
17 15 0.47
18 11 0.34
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTTAAAAATATAAAAT
Found at i:580399 original size:6 final size:7
Alignment explanation
Indices: 580382--580408 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
580372 ATTGGAGATT
580382 TTTTTTA
1 TTTTTTA
580389 TTTTTTA
1 TTTTTTA
580396 TTTTTTA
1 TTTTTTA
580403 TTTTTT
1 TTTTTT
580409 GTTCTTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:581519 original size:11 final size:12
Alignment explanation
Indices: 581488--581554 Score: 59
Period size: 11 Copynumber: 5.7 Consensus size: 12
581478 GAAAAATAAA
*
581488 AAAACATGATAT
1 AAAACATAATAT
*
581500 AAAAAATAAT-T
1 AAAACATAATAT
581511 AAAACATAATAT
1 AAAACATAATAT
581523 AAAA-ATAA-AT
1 AAAACATAATAT
**
581533 ATGACATGAATAT
1 AAAACAT-AATAT
581546 AAGAACATA
1 AA-AACATA
581555 TAAATATATA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
10 4 0.09
11 16 0.37
12 15 0.35
13 4 0.09
14 4 0.09
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (12 bp):
AAAACATAATAT
Found at i:581544 original size:23 final size:23
Alignment explanation
Indices: 581479--581547 Score: 81
Period size: 22 Copynumber: 3.1 Consensus size: 23
581469 TAAATATACG
581479 AAAAATAAA-AAAACATG-ATAT
1 AAAAATAAATAAAACATGAATAT
*
581500 AAAAAATAATTAAAACAT-AATAT
1 -AAAAATAAATAAAACATGAATAT
**
581523 AAAAATAAATATGACATGAATAT
1 AAAAATAAATAAAACATGAATAT
581546 AA
1 AA
581548 GAACATATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
22 22 0.55
23 18 0.45
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.23
Consensus pattern (23 bp):
AAAAATAAATAAAACATGAATAT
Found at i:582220 original size:22 final size:22
Alignment explanation
Indices: 582175--582236 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 22
582165 TTATACTATT
582175 TTAAATATACAAA-AATAAAAACA
1 TTAAATA-A-AAATAATAAAAACA
*
582198 TTAAATAAAAATAATTAAAACA
1 TTAAATAAAAATAATAAAAACA
582220 -TAATATAAAAATGAATA
1 TTAA-ATAAAAAT-AATA
582237 TGATACGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 6 0.18
22 18 0.53
23 10 0.29
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (22 bp):
TTAAATAAAAATAATAAAAACA
Found at i:582236 original size:12 final size:11
Alignment explanation
Indices: 582202--582261 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
582192 AAAACATTAA
582202 ATAAAAATAAT
1 ATAAAAATAAT
582213 -TAAAACATAAT
1 ATAAAA-ATAAT
582224 ATAAAAATGAAT
1 ATAAAAAT-AAT
* * **
582236 ATGATACGAAT
1 ATAAAAATAAT
582247 ATAAAAAT-AT
1 ATAAAAATAAT
582257 ATAAA
1 ATAAA
582262 TATATATGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
10 12 0.32
11 14 0.37
12 12 0.32
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (11 bp):
ATAAAAATAAT
Found at i:583261 original size:27 final size:27
Alignment explanation
Indices: 583219--583383 Score: 93
Period size: 27 Copynumber: 6.2 Consensus size: 27
583209 TTAAAAATAA
* *
583219 ATAAATTTAATA-ATTTATATATTCAT
1 ATAATTTTAATATATTTATATATTTAT
*
583245 ATAATTTTTATATATTT-TATGA--T-T
1 ATAATTTTAATATATTTATAT-ATTTAT
*
583269 AT-A-TTTAAAATA-TTATATATTTAT
1 ATAATTTTAATATATTTATATATTTAT
583293 ATAAATTTTAATATATTTATAATTTATATTAT
1 AT-AATTTTAATATATTTAT-A--TAT-TTAT
583325 ATAAATTTTAATA-ATTT-TATAATTTAT
1 AT-AATTTTAATATATTTATAT-ATTTAT
* * *
583352 ATTATATTTTTAT-TATTTTTATA-TCAT
1 A-TA-ATTTTAATATATTTATATATTTAT
583379 ATAAT
1 ATAAT
583384 ATAATAATTA
Statistics
Matches: 112, Mismatches: 8, Indels: 39
0.70 0.05 0.25
Matches are distributed among these distances:
21 3 0.03
22 10 0.09
23 2 0.02
24 6 0.05
25 2 0.02
26 16 0.14
27 24 0.21
28 19 0.17
29 5 0.04
30 1 0.01
31 7 0.06
32 17 0.15
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (27 bp):
ATAATTTTAATATATTTATATATTTAT
Found at i:583285 original size:48 final size:47
Alignment explanation
Indices: 583223--583361 Score: 131
Period size: 48 Copynumber: 2.8 Consensus size: 47
583213 AAATAAATAA
*
583223 ATTTAATAATTTATATATTCATATAATTTTTATATATTTTATGA-TTAT
1 ATTTAA-AATTTATATATT-ATATAATTTTTATATATTTTATAATTTAT
*
583271 ATTTAAAATATTATATATTTATATAAATTTTA-ATATATTTATAATTTAT
1 ATTTAAAAT-TTATATA-TTATATAATTTTTATATAT-TTTATAATTTAT
* *
583320 ATTATATAAATTT-TAATAATTTTATAATTTATATTATATTTT
1 ATT-TA-AAATTTAT-AT-ATTATATAATTTTTA-TATATTTT
583362 TATTATTTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
47 7 0.09
48 30 0.39
49 10 0.13
50 17 0.22
51 8 0.11
52 4 0.05
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.58
Consensus pattern (47 bp):
ATTTAAAATTTATATATTATATAATTTTTATATATTTTATAATTTAT
Found at i:583297 original size:20 final size:20
Alignment explanation
Indices: 583276--583313 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
583266 ATTATATTTA
583276 AAATATT-ATATATTTATAT
1 AAATATTAATATATTTATAT
*
583295 AAATTTTAATATATTTATA
1 AAATATTAATATATTTATA
583314 ATTTATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AAATATTAATATATTTATAT
Found at i:583313 original size:18 final size:18
Alignment explanation
Indices: 583268--583360 Score: 67
Period size: 17 Copynumber: 5.4 Consensus size: 18
583258 ATTTTATGAT
*
583268 TATATTTA-AAATATT-A
1 TATATTTATAAATTTTAA
583284 TATATTTATATAAATTTTAA
1 TATA-TT-TATAAATTTTAA
583304 TATATTTAT-AA-TTT-A
1 TATATTTATAAATTTTAA
*
583319 TAT-TATATAAATTTTAA
1 TATATTTATAAATTTTAA
*
583336 TA-ATTT-TATAATTTATAT
1 TATATTTATA-AATTT-TAA
583354 TATATTT
1 TATATTT
583361 TTATTATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
14 4 0.06
15 6 0.10
16 12 0.19
17 14 0.23
18 9 0.15
19 12 0.19
20 5 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATTTATAAATTTTAA
Found at i:583326 original size:20 final size:20
Alignment explanation
Indices: 583278--583369 Score: 58
Period size: 20 Copynumber: 5.0 Consensus size: 20
583268 TATATTTAAA
**
583278 ATATTATATATTTAT-ATAA
1 ATATTATATATTTATAATTT
*
583297 ATTTTAATATATTTATAATTT
1 ATATT-ATATATTTATAATTT
583318 ATA-T-TATA--TA-AATTT
1 ATATTATATATTTATAATTT
*
583333 -TAATA-AT-TTTATAATTT
1 ATATTATATATTTATAATTT
* *
583350 ATATTATATTTTTATTATTT
1 ATATTATATATTTATAATTT
583370 TTATATCATA
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
14 2 0.04
15 8 0.14
16 4 0.07
17 5 0.09
18 8 0.14
19 6 0.11
20 20 0.35
21 4 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTATATATTTATAATTT
Found at i:583329 original size:32 final size:32
Alignment explanation
Indices: 583284--583358 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 32
583274 TAAAATATTA
583284 TATATTTATATAAATTTTAAT-ATATTTATAATT
1 TATA-TTATATAAATTTTAATAAT-TTTATAATT
583317 TATATTATATAAATTTTAATAATTTTATAATT
1 TATATTATATAAATTTTAATAATTTTATAATT
583349 TATATTATAT
1 TATATTATAT
583359 TTTTATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
32 35 0.85
33 6 0.15
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
TATATTATATAAATTTTAATAATTTTATAATT
Found at i:583438 original size:39 final size:39
Alignment explanation
Indices: 583362--583440 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
583352 ATTATATTTT
* * *
583362 TATTATTTTTATATCATATAATATAATAATTATTTTAAA
1 TATTATATTTATATCATATAATATAATAATGACTTTAAA
* *
583401 TATTATATTTATATCATATAATA-ATATCATGCCTTTAAA
1 TATTATATTTATATCATATAATATA-ATAATGACTTTAAA
583440 T
1 T
583441 TAATTATGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (39 bp):
TATTATATTTATATCATATAATATAATAATGACTTTAAA
Found at i:584055 original size:20 final size:19
Alignment explanation
Indices: 584013--584057 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
584003 TAGATCCAAG
584013 TTAAAATAATATTTTTATA
1 TTAAAATAATATTTTTATA
584032 TTAAAATAATATATTTT-TA
1 TTAAAATAATAT-TTTTATA
*
584051 TTTAAAT
1 TTAAAAT
584058 TTAATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAAATAATATTTTTATA
Found at i:584062 original size:21 final size:21
Alignment explanation
Indices: 584013--584056 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
584003 TAGATCCAAG
584013 TTAAAAT-A-ATATTTTTATA
1 TTAAAATAATATATTTTTATA
584032 TTAAAATAATATATTTTTAT-
1 TTAAAATAATATATTTTTATA
584052 TTAAA
1 TTAAA
584057 TTTAATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.30
20 6 0.26
21 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTAAAATAATATATTTTTATA
Found at i:584077 original size:21 final size:21
Alignment explanation
Indices: 584053--584094 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
584043 TATTTTTATT
584053 TAAAT-TTAATTATAAAATATA
1 TAAATATTAA-TATAAAATATA
584074 TAAATATTAATATAAAATATA
1 TAAATATTAATATAAAATATA
584095 ACTTTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATATTAATATAAAATATA
Found at i:585304 original size:3 final size:3
Alignment explanation
Indices: 585296--585340 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
585286 ACTGTTGACA
585296 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
585341 TTGCTTTAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:589125 original size:26 final size:26
Alignment explanation
Indices: 589089--589138 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
589079 TATTTGAATT
*
589089 TCGAATCTATTAGATGCTATCATATC
1 TCGAATCTATTAAATGCTATCATATC
589115 TCGAATCTATTAAATGCTATCATA
1 TCGAATCTATTAAATGCTATCATA
589139 GTTTATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (26 bp):
TCGAATCTATTAAATGCTATCATATC
Found at i:589320 original size:27 final size:29
Alignment explanation
Indices: 589290--589344 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 29
589280 TTCAATGTTA
589290 TCCATTAAATGCTATCG-ATAT-TTAGAG
1 TCCATTAAATGCTATCGAATATATTAGAG
589317 TCCATTAAATGCTATCGAATATATTAGA
1 TCCATTAAATGCTATCGAATATATTAGA
589345 TGTTATTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 17 0.65
28 4 0.15
29 5 0.19
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (29 bp):
TCCATTAAATGCTATCGAATATATTAGAG
Found at i:595640 original size:2 final size:2
Alignment explanation
Indices: 595633--595664 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
595623 CAAATCAGGA
595633 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
595665 TAATCGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:596456 original size:2 final size:2
Alignment explanation
Indices: 596449--596477 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
596439 TAATAAGCAT
596449 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
596478 TCGAGTACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:596777 original size:22 final size:20
Alignment explanation
Indices: 596747--596794 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 20
596737 CATATTTAAA
596747 TTTAAATATAATAATAAA-ATT
1 TTTAAATAT-ATAA-AAATATT
596768 TTATAAATATATAAAAATATT
1 TT-TAAATATATAAAAATATT
596789 TTTAAA
1 TTTAAA
596795 AAATTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.28
21 11 0.44
22 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTAAATATATAAAAATATT
Found at i:597415 original size:2 final size:2
Alignment explanation
Indices: 597408--597459 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
597398 AGGTCCAAAC
597408 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
597450 TA TA TA TA TA
1 TA TA TA TA TA
597460 AATGACGTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:598325 original size:20 final size:20
Alignment explanation
Indices: 598275--598327 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 20
598265 TAATTATGTC
598275 TAAAATATTATA-TAT-TAT
1 TAAAATATTATATTATATAT
*
598293 TATAA-ATT-T-TTATATAT
1 TAAAATATTATATTATATAT
598310 TAAAATATTATATTATAT
1 TAAAATATTATATTATAT
598328 TATATAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 7 0.25
19 1 0.04
20 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TAAAATATTATATTATATAT
Found at i:603808 original size:2 final size:2
Alignment explanation
Indices: 603803--603835 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
603793 ATACTTGTGT
603803 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
603836 TGAATTTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:605828 original size:32 final size:32
Alignment explanation
Indices: 605791--605884 Score: 115
Period size: 32 Copynumber: 3.0 Consensus size: 32
605781 ATAAATATGA
605791 TATTAATATATTAAAATTTATATAATATAATT
1 TATTAATATATTAAAATTTATATAATATAATT
*
605823 TATTAATATATTAAAATTTTATTTAAATATAA-T
1 TATTAATATATTAAAA-TTTATAT-AATATAATT
*
605856 TA-TAATATA-TAAAA-ATATATAACTATAAT
1 TATTAATATATTAAAATTTATATAA-TATAAT
605885 ATAAATACTC
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
28 2 0.04
29 9 0.16
31 5 0.09
32 23 0.42
33 9 0.16
34 7 0.13
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (32 bp):
TATTAATATATTAAAATTTATATAATATAATT
Found at i:607831 original size:12 final size:12
Alignment explanation
Indices: 607814--607845 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
607804 CCCCTCACCA
*
607814 AAAATAAAAGAT
1 AAAATAAAAAAT
607826 AAAATAAAAAAT
1 AAAATAAAAAAT
607838 AAAATAAA
1 AAAATAAA
607846 TGAGGCTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:609121 original size:2 final size:2
Alignment explanation
Indices: 609114--609146 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
609104 AGGCCCAAAT
609114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
609147 GTAAACAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:610113 original size:1 final size:1
Alignment explanation
Indices: 610102--610133 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
610092 TTATTTAAAT
*
610102 GGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
610134 CAATTGCGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Found at i:615257 original size:15 final size:16
Alignment explanation
Indices: 615239--615269 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
615229 ATTTATGACA
615239 AATAAA-TTTTAATTT
1 AATAAATTTTTAATTT
615254 AATAAATTTTTAATTT
1 AATAAATTTTTAATTT
615270 TTAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATAAATTTTTAATTT
Found at i:615275 original size:29 final size:28
Alignment explanation
Indices: 615243--615306 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
615233 ATGACAAATA
*
615243 AATTTTAATTT-AATAAATTTTTAATTTTT
1 AATTTT-ATTTAAATAAA-TTTTAATCTTT
615272 AA-TTTATTTACAAATAAATTTTAATCTTT
1 AATTTTATTT--AAATAAATTTTAATCTTT
615301 AATTTT
1 AATTTT
615307 TATCAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
27 4 0.13
28 3 0.10
29 14 0.47
30 9 0.30
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (28 bp):
AATTTTATTTAAATAAATTTTAATCTTT
Found at i:615296 original size:22 final size:21
Alignment explanation
Indices: 615224--615296 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 21
615214 TTTACAAATT
*
615224 TTTTAATTTATGACAAATAAA
1 TTTTAATTTATTACAAATAAA
* * *
615245 TTTTAATTTAATA-AATTTTTAAT
1 TTTTAATTTATTACAA---ATAAA
615268 TTTTAATTTATTTACAAATAAA
1 TTTTAATTTA-TTACAAATAAA
615290 TTTTAAT
1 TTTTAAT
615297 CTTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
20 2 0.05
21 11 0.28
22 10 0.25
23 13 0.32
24 2 0.05
25 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.53
Consensus pattern (21 bp):
TTTTAATTTATTACAAATAAA
Found at i:615641 original size:19 final size:21
Alignment explanation
Indices: 615619--615661 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
615609 CAATTAGTAA
615619 ATTAAAAA-AAAATTATTT-T
1 ATTAAAAATAAAATTATTTAT
615638 ATTAAAAATAAAATTATTTAT
1 ATTAAAAATAAAATTATTTAT
615659 ATT
1 ATT
615662 TACTATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 8 0.36
20 10 0.45
21 4 0.18
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAAAATAAAATTATTTAT
Done.