genome.fa.s1406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1406
Parameters: 2 7 7 80 10 50 1000
Length:  78008

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114--1149	8	4.2	8	86	13	54	36	0	0	63	0.94
1122--1172	18	3.0	16	83	13	50	33	0	0	66	0.92
1112--1174	13	4.9	14	75	19	57	33	0	0	66	0.92
3376--3416	15	2.9	14	85	7	55	68	2	2	26	1.15
3868--3925	21	2.8	21	82	10	66	36	13	5	44	1.66
4510--4535	13	2.0	13	100	0	52	38	15	15	30	1.88
4492--4555	32	2.0	33	87	3	94	40	17	14	28	1.88
10201--10243	21	2.0	21	95	0	77	30	16	18	34	1.93
14318--14363	21	2.2	21	84	7	58	43	6	2	47	1.41
16668--16723	21	2.7	21	77	5	60	33	25	3	37	1.73
20049--20108	21	2.9	21	85	5	77	33	25	5	36	1.78
23648--23722	20	3.8	20	83	0	87	30	12	14	42	1.82
31720--31796	21	3.7	21	100	0	154	35	10	18	36	1.85
31826--31887	19	3.2	19	71	13	54	43	12	14	29	1.83
31854--31926	32	2.3	32	95	0	128	35	10	16	36	1.84
31856--31918	19	3.7	18	72	24	64	34	11	15	38	1.83
31950--31975	13	2.0	13	100	0	52	30	15	15	38	1.88
34310--34440	52	2.5	51	80	3	154	29	24	12	33	1.92
34453--34858	155	2.6	155	91	0	643	27	25	14	32	1.94
34451--34859	76	5.3	76	83	3	512	27	25	14	32	1.94
34845--34960	51	2.3	51	90	0	187	29	29	11	30	1.91
34971--35067	51	1.9	51	80	4	115	30	24	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38208--38277	32	2.2	32	86	0	104	34	10	15	40	1.81
38323--38350	13	2.2	13	100	0	56	28	21	17	32	1.96
38359--38486	52	2.5	52	93	0	220	35	18	16	28	1.93
45671--45743	9	7.9	9	75	15	69	83	9	1	5	0.86
45671--45742	10	6.6	10	76	17	56	84	8	1	5	0.82
45684--45763	21	3.9	21	74	14	69	78	11	3	6	1.05
46978--47264	28	10.1	28	85	4	378	28	32	16	22	1.96
48127--48182	28	2.0	28	89	0	85	32	16	10	41	1.82
48909--48991	19	4.7	19	80	17	106	31	12	19	37	1.88
48910--48972	32	2.0	32	96	0	117	31	12	20	34	1.90
48929--48953	13	1.9	13	100	0	50	36	16	16	32	1.90
49044--49068	13	1.9	13	100	0	50	32	16	16	36	1.90
50355--50517	78	2.1	78	97	0	308	26	25	20	26	1.99
54798--54822	11	2.3	11	100	0	50	68	8	0	24	1.16
57762--58041	149	1.9	149	84	3	375	40	19	12	27	1.87
61272--61343	20	3.6	19	77	7	81	41	9	13	34	1.78
61269--61346	40	2.0	39	92	2	129	41	11	12	34	1.80
61907--62136	28	8.0	28	87	4	300	22	17	31	28	1.97
61907--62141	84	2.7	85	90	5	346	22	17	31	28	1.96
61907--62136	112	2.0	118	89	5	364	22	17	31	28	1.97
62338--62793	32	14.9	32	82	7	405	21	19	28	29	1.98
62338--62751	95	4.5	93	81	7	429	21	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62339--62829	127	4.0	124	82	6	528	21	19	29	29	1.98
62807--63099	27	10.7	27	82	4	311	29	13	31	25	1.94
62791--63065	81	3.4	80	84	4	354	29	14	32	24	1.94
64403--64436	15	2.3	15	85	5	52	5	11	8	73	1.24
71447--71521	20	3.8	20	76	3	71	41	10	13	34	1.79
71444--71521	40	2.0	39	87	2	111	41	11	12	34	1.80
73062--73114	19	2.7	20	88	2	72	39	16	15	28	1.89
73065--73135	20	3.6	19	83	5	70	39	15	15	29	1.88
73172--73196	12	2.1	12	100	0	50	36	16	16	32	1.90
77621--77675	22	2.5	22	82	5	67	36	0	0	63	0.95
77660--77701	22	2.0	22	85	4	59	54	2	0	42	1.13

Tables:   1

The End!