Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2772588
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 118404 characters in sequence are not A, C, G, or T
File 13 of 18
Found at i:2047485 original size:14 final size:14
Alignment explanation
Indices: 2047449--2047493 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
2047439 ATAATTAAAA
2047449 ATTATT-AAATTAT
1 ATTATTAAAATTAT
* *
2047462 ATATAGTAAAAATAT
1 AT-TATTAAAATTAT
2047477 ATTATTAAAATTAT
1 ATTATTAAAATTAT
2047491 ATT
1 ATT
2047494 TATATTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 2 0.08
14 16 0.62
15 8 0.31
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
ATTATTAAAATTAT
Found at i:2047512 original size:23 final size:22
Alignment explanation
Indices: 2047484--2047550 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
2047474 TATATTATTA
2047484 AAATTATATTTATATTGAATAAT
1 AAATTATATTTATATT-AATAAT
2047507 AAATTATATATTATA--AATGAA-
1 AAATTATAT-TTATATTAAT-AAT
*
2047528 AAGTTATATTTATATTAAATAAT
1 AAATTATATTTATATT-AATAAT
2047551 TATTAAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
20 5 0.14
21 11 0.30
22 4 0.11
23 12 0.32
24 5 0.14
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (22 bp):
AAATTATATTTATATTAATAAT
Found at i:2047564 original size:27 final size:29
Alignment explanation
Indices: 2047534--2047589 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
2047524 TGAAAAGTTA
*
2047534 TATTTATATT-AAATAA-TTATTAAAAAT
1 TATTTATATTAAAATAATTTAATAAAAAT
2047561 TATTTATATTGAAAATAATTTAATAAAAA
1 TATTTATATT-AAAATAATTTAATAAAAA
2047590 AATAACAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 10 0.40
29 6 0.24
30 9 0.36
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (29 bp):
TATTTATATTAAAATAATTTAATAAAAAT
Found at i:2049023 original size:58 final size:57
Alignment explanation
Indices: 2048950--2049206 Score: 225
Period size: 58 Copynumber: 4.4 Consensus size: 57
2048940 GAAAGCCTCC
* * *
2048950 AGATCACGAAAAATGACCTAAATAACATCAAAATTCATAAAATTACATCCAAGTCCCT
1 AGATCATG-AAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAGTCCCT
* * * **
2049008 A-AGTCATGAATAATGACCAAAATGCCA-CAAGAAATTCATAAAATTATATTTAAGTCCCT
1 AGA-TCATGAA-AATGACCTAAATGACATC-A-AAATTCATAAAATTACATCAAAGTCCCT
* * * * * * *
2049067 AGATCATGTAAAATAACCTAAATTACCTCGATATTTATAAAATTAAATCAAAGTCCCT
1 AGATCATG-AAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAGTCCCT
* * * *
2049125 AGATCATGGAAAGTGACCTAAATGACATAAAAAATTTATAAAATTACATCAAA-T-TCT
1 AGATCAT-GAAAATGACCTAAATGACAT-CAAAATTCATAAAATTACATCAAAGTCCCT
*
2049182 AGATCATAGAAAATGAGCTAAATGA
1 AGATCAT-GAAAATGACCTAAATGA
2049207 TGAAAAGTAT
Statistics
Matches: 160, Mismatches: 30, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
57 28 0.17
58 65 0.41
59 63 0.39
60 4 0.03
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.26
Consensus pattern (57 bp):
AGATCATGAAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAGTCCCT
Found at i:2049052 original size:59 final size:58
Alignment explanation
Indices: 2048980--2049197 Score: 185
Period size: 59 Copynumber: 3.7 Consensus size: 58
2048970 AATAACATCA
*
2048980 AAATTCATAAAATTACATCCAAGTCCCTA-AGTCATGAATAATGACCAAAATGCCACAAG
1 AAATTCATAAAATTACATCAAAGTCCCTAGA-TCATGAA-AATGACCAAAATGCCACAAG
* ** * * * *
2049039 AAATTCATAAAATTATATTTAAGTCCCTAGATCATGTAAAATAACCTAAATTACCTC--G
1 AAATTCATAAAATTACATCAAAGTCCCTAGATCATG-AAAATGACC-AAAATGCCACAAG
* * * * * * * *
2049097 ATATTTATAAAATTAAATCAAAGTCCCTAGATCATGGAAAGTGACCTAAATGACATAAA
1 AAATTCATAAAATTACATCAAAGTCCCTAGATCAT-GAAAATGACCAAAATGCCACAAG
* *
2049156 AAATTTATAAAATTACATCAAA-T-TCTAGATCATAGAAAATGA
1 AAATTCATAAAATTACATCAAAGTCCCTAGATCAT-GAAAATGA
2049198 GCTAAATGAT
Statistics
Matches: 127, Mismatches: 26, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
57 20 0.16
58 39 0.31
59 58 0.46
60 10 0.08
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (58 bp):
AAATTCATAAAATTACATCAAAGTCCCTAGATCATGAAAATGACCAAAATGCCACAAG
Found at i:2049142 original size:117 final size:117
Alignment explanation
Indices: 2048950--2049170 Score: 266
Period size: 117 Copynumber: 1.9 Consensus size: 117
2048940 GAAAGCCTCC
* * *
2048950 AGATCACGAAAAATGACCTAAATAACATCAAAATTCATAAAATTACATCCAAGTCCCTAAGTCAT
1 AGATCACGAAAAATAACCTAAATAACATCAAAATTCATAAAATTAAATCAAAGTCCCTAAGTCAT
* *
2049015 GAATAATGACCAAAATGCCACAAGAAATTCATAAAATTATATTTAAGTCCCT
66 GAATAATGACCAAAATGACACAAAAAATTCATAAAATTATATTTAAGTCCCT
* * * * * * *
2049067 AGATCATGTAAAATAACCTAAATTACCTCGATATTTATAAAATTAAATCAAAGTCCCT-AGATCA
1 AGATCACGAAAAATAACCTAAATAACATCAAAATTCATAAAATTAAATCAAAGTCCCTAAG-TCA
* * * *
2049131 TGGAA-AGTGACCTAAATGACATAAAAAATTTATAAAATTA
65 T-GAATAATGACCAAAATGACACAAAAAATTCATAAAATTA
2049171 CATCAAATTC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
116 2 0.02
117 81 0.94
118 3 0.03
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.27
Consensus pattern (117 bp):
AGATCACGAAAAATAACCTAAATAACATCAAAATTCATAAAATTAAATCAAAGTCCCTAAGTCAT
GAATAATGACCAAAATGACACAAAAAATTCATAAAATTATATTTAAGTCCCT
Found at i:2049635 original size:20 final size:21
Alignment explanation
Indices: 2049581--2049639 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
2049571 ACTGCCAAGG
* *
2049581 AAATGTGTCGATACATGCTTC
1 AAATGTATCGATACATGATTC
* *
2049602 AAATTGTATTGATACATTATTC
1 AAA-TGTATCGATACATGATTC
2049624 -AATGTATCGATACATG
1 AAATGTATCGATACATG
2049640 CAGGTAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 12 0.39
21 5 0.16
22 14 0.45
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (21 bp):
AAATGTATCGATACATGATTC
Found at i:2050730 original size:20 final size:22
Alignment explanation
Indices: 2050696--2050736 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
2050686 AAAAGTCAAA
2050696 ACCCTAAAAAGTATCGATACAG
1 ACCCTAAAAAGTATCGATACAG
2050718 ACCC-AAAAA-TATCGATACA
1 ACCCTAAAAAGTATCGATACA
2050737 TATTGCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 5 0.26
22 4 0.21
ACGTcount: A:0.49, C:0.24, G:0.10, T:0.17
Consensus pattern (22 bp):
ACCCTAAAAAGTATCGATACAG
Found at i:2050874 original size:13 final size:13
Alignment explanation
Indices: 2050856--2050885 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2050846 GATACATGGG
*
2050856 ACATTGTATCGAT
1 ACATTGTATCAAT
2050869 ACATTGTATCAAT
1 ACATTGTATCAAT
2050882 ACAT
1 ACAT
2050886 AGTAAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
ACATTGTATCAAT
Found at i:2056926 original size:28 final size:28
Alignment explanation
Indices: 2056895--2056952 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
2056885 ATGATTAATT
2056895 ATGTTGTTAAATGAATTATGTTTGTTTG
1 ATGTTGTTAAATGAATTATGTTTGTTTG
*
2056923 ATGTTTTTAAATGAATTATGTTTGTTTG
1 ATGTTGTTAAATGAATTATGTTTGTTTG
2056951 AT
1 AT
2056953 TTGAATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.55
Consensus pattern (28 bp):
ATGTTGTTAAATGAATTATGTTTGTTTG
Found at i:2057087 original size:20 final size:20
Alignment explanation
Indices: 2057048--2057087 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2057038 AAAACTAGAT
* *
2057048 GTATCGATACAATGATATTA
1 GTATCGATACAAGGACATTA
*
2057068 GTATCGATACAAGGGCATTA
1 GTATCGATACAAGGACATTA
2057088 TTTGGGACTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (20 bp):
GTATCGATACAAGGACATTA
Found at i:2059051 original size:22 final size:23
Alignment explanation
Indices: 2059010--2059069 Score: 95
Period size: 22 Copynumber: 2.7 Consensus size: 23
2059000 AGGGAAGAAA
2059010 TTTTATTAAAGGGGAGGAAAATT
1 TTTTATTAAAGGGGAGGAAAATT
2059033 TTTTATTAAAGGGGA-GAAAATT
1 TTTTATTAAAGGGGAGGAAAATT
* *
2059055 TTTAATTAAAAGGGA
1 TTTTATTAAAGGGGA
2059070 AGTTATAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 20 0.57
23 15 0.43
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (23 bp):
TTTTATTAAAGGGGAGGAAAATT
Found at i:2059807 original size:12 final size:13
Alignment explanation
Indices: 2059790--2059818 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2059780 GATACATGAG
2059790 ACATTGTATC-AT
1 ACATTGTATCGAT
2059802 ACATTGTATCGAT
1 ACATTGTATCGAT
2059815 ACAT
1 ACAT
2059819 AGTAAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.38
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:2065116 original size:64 final size:64
Alignment explanation
Indices: 2065046--2065350 Score: 262
Period size: 64 Copynumber: 4.8 Consensus size: 64
2065036 TAACCAATTT
* * *
2065046 AAAAAGACACATGTTCAAATTTTGACTTGTTTGGAAAGAGATAAGTTTGACTCCCAACTTATTC
1 AAAAAGACATAGGTTCAAATTTTGACTTGTTTGAAAAGAGATAAGTTTGACTCCCAACTTATTC
* * * * ** * * **
2065110 ATAAAGATACAGGTT-AGACTTTTGACTTGTTCAAAAAGAAACAAGTTTGACTCTTAACTTATTC
1 AAAAAGACATAGGTTCA-AATTTTGACTTGTTTGAAAAGAGATAAGTTTGACTCCCAACTTATTC
* * * * * * * *
2065174 AAAAAGACATAGGTTCGAATTTTGATTTGTTT-AAAAGAAAATAAATTTGACTTCTAACCTATTT
1 AAAAAGACATAGGTTCAAATTTTGACTTGTTTGAAAAG-AGATAAGTTTGACTCCCAACTTATTC
* * * * * * * *
2065238 AAAAAGACATA-GTTCAAATTTTGACTTATTCGAAAAAAGACAAGTTT-AATTCCTAGTTATTC
1 AAAAAGACATAGGTTCAAATTTTGACTTGTTTGAAAAGAGATAAGTTTGACTCCCAACTTATTC
* *
2065300 AAGAAGACATAGGTTC-AATTTATGACTT-TTTCAAAAGAGATAAGTTTGACT
1 AAAAAGACATAGGTTCAAATTT-TGACTTGTTTGAAAAGAGATAAGTTTGACT
2065351 TTTGACCTAT
Statistics
Matches: 190, Mismatches: 44, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
62 39 0.21
63 41 0.22
64 110 0.58
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (64 bp):
AAAAAGACATAGGTTCAAATTTTGACTTGTTTGAAAAGAGATAAGTTTGACTCCCAACTTATTC
Found at i:2065175 original size:32 final size:32
Alignment explanation
Indices: 2065088--2065180 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 32
2065078 GGAAAGAGAT
** * *
2065088 AAGTTTGACTCCCAACTTATTCATAAAGATAC
1 AAGTTTGACTCTTAACTTATTCAAAAAGAAAC
* * * * *
2065120 AGGTTAGACTTTTGACTTGTTCAAAAAGAAAC
1 AAGTTTGACTCTTAACTTATTCAAAAAGAAAC
2065152 AAGTTTGACTCTTAACTTATTCAAAAAGA
1 AAGTTTGACTCTTAACTTATTCAAAAAGA
2065181 CATAGGTTCG
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (32 bp):
AAGTTTGACTCTTAACTTATTCAAAAAGAAAC
Found at i:2065244 original size:128 final size:124
Alignment explanation
Indices: 2065046--2065362 Score: 307
Period size: 128 Copynumber: 2.5 Consensus size: 124
2065036 TAACCAATTT
* * * * * * * *
2065046 AAAAAGACACATGTTCAAATTTTGACTTGTTTGGAAAGAGATAAGTTTGACTCCCAACTTATTCA
1 AAAAAGACATAGGTTC-AATTTTGATTTGTTT-AAAAGAGATAAGTTTGACTTCTAACCTATTTA
* * * * * *
2065111 TAAAGATACAGGTT-AGACTTTTGACTTGTTC-AAAAAGAAACAAGTTTGACTCTTAACTTATTC
64 AAAAGACACA-GTTCA-AATTTTGACTTATTCGAAAAA-AAACAAGTTTAACTCCT-ACTTATTC
* *
2065174 AAAAAGACATAGGTTCGAATTTTGATTTGTTTAAAAGAAAATAAATTTGACTTCTAACCTATTTA
1 AAAAAGACATAGGTTC-AATTTTGATTTGTTTAAAAG-AGATAAGTTTGACTTCTAACCTATTTA
* * * *
2065239 AAAAGACATAGTTCAAATTTTGACTTATTCGAAAAAAGACAAGTTTAATTCCTAGTTATTC
64 AAAAGACACAGTTCAAATTTTGACTTATTCGAAAAAAAACAAGTTTAACTCCTACTTATTC
* * * *
2065300 AAGAAGACATAGGTTCAATTTATGACTTT-TTCAAAAGAGATAAGTTTGACTTTTGACCTATTT
1 AAAAAGACATAGGTTCAATTT-TGA-TTTGTTTAAAAGAGATAAGTTTGACTTCTAACCTATTT
2065363 GGAAAAACAT
Statistics
Matches: 157, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
125 27 0.17
126 32 0.20
127 36 0.23
128 62 0.39
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (124 bp):
AAAAAGACATAGGTTCAATTTTGATTTGTTTAAAAGAGATAAGTTTGACTTCTAACCTATTTAAA
AAGACACAGTTCAAATTTTGACTTATTCGAAAAAAAACAAGTTTAACTCCTACTTATTC
Found at i:2067461 original size:165 final size:165
Alignment explanation
Indices: 2067046--2067864 Score: 867
Period size: 165 Copynumber: 5.0 Consensus size: 165
2067036 ATTCCTTCTA
* * * * *
2067046 TTTTCAAATTAC-AAGATTTTCTTCTC-CGTAAATT-TTTTAGAGAGGATTTTTCTCGGTTTTTA
1 TTTTCAAAATACGAAG-TTTTCTACTCTCGTAAATTCTTTCAGAG-GGATTTTTCTTGG-TTTTG
* * * * ** * *
2067108 ATTTTAAAAATTCATTAAATATTATTTTTTAACTCACATTAAATT-AGTTTTC-AAAATTTATTC
63 ATTTTTAAAATTTATCAAATATTATTATTTATTTCATATT-AATTCAGTTTTCAAAAATTCATTC
* *
2067171 ATCTTC-ATAAAATTTGGAATTTTTTCTTTGAAACTCTCTTT
127 AT-TTCAAT-AAATTTTGAATTTTTTCCTTGAAA-TCTCTTT
* * * ** *
2067212 TTTTCAAAATACGAATTTTTCTA-TTTCGTAAATTTTTTTTGAAGGGATTTTCCTTGGTTTTTGA
1 TTTTCAAAATACGAAGTTTTCTACTCTCGTAAATTCTTTCAG-AGGGATTTTTCTTGG-TTTTGA
* * *
2067276 TTTTTAAAATTAATCAAATATGATTAATTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
64 TTTTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
* *
2067341 TTCAATGAATTTTGAATTTTTTCCTTGAAATCTTTTT
129 TTCAATAAATTTTGAATTTTTTCCTTGAAATCTCTTT
* * *
2067378 TTTTCGAAATATCG-CGTTTTCTACTCT-GTAAATTCTTTCAGGGGAGATTTTTCTTGGTTTTGA
1 TTTTCAAAATA-CGAAGTTTTCTACTCTCGTAAATTCTTTCAGAGG-GATTTTTCTTGGTTTTGA
* ** *
2067441 TTTTTAAAACTTATCAAATATTATTATTTATTTTTTATTAATTCAGTTTTTAAAAATTCATTCAT
64 TTTTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCAT
* * *
2067506 TTCCATGAATTTTGAATTTTTT-CTTGAAATCCCTTT
129 TTCAATAAATTTTGAATTTTTTCCTTGAAATCTCTTT
* * * * *
2067542 TTTTCAAAATACGAAGTTTTTTACTC-CATAAATTCTTT-TGGGGAGATTTTTTCTTGATTTTTG
1 TTTTCAAAATACGAAGTTTTCTACTCTCGTAAATTCTTTCAGAGG-GA-TTTTTCTTG-GTTTTG
* * * *
2067605 ATTTTTAAAATTTATCAAATATTATTATTTATTTCTTATTAATTTATTTTTCAAAAATTCATTCG
63 ATTTTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCA
* *
2067670 TTTCCAA-AAATTTTGAATTTTTTCCTTGAAATTTCCTT
128 TTT-CAATAAATTTTGAATTTTTTCCTTGAAATCTCTTT
* * * * * * *
2067708 TTTCCTAAATACGAAGTTTTTTACT-TCGTAAATTCTTTCACAGGTATTTTTCTTGTTTTTTATT
1 TTTTCAAAATACGAAGTTTTCTACTCTCGTAAATTCTTTCAGAGGGATTTTTCTTGGTTTTGATT
* * *
2067772 TTTAAAATTTATTAAATATTATTATTTATTTCATATTAATTCAATTTTCAAAAAATCATTCATTT
66 TTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
* *
2067837 CCAT-AATTTTAAATTTTTTCCTTGAAAT
131 CAATAAATTTTGAATTTTTTCCTTGAAAT
2067865 TCCCTTTTCT
Statistics
Matches: 560, Mismatches: 74, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
163 34 0.06
164 118 0.21
165 179 0.32
166 122 0.22
167 91 0.16
168 16 0.03
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.52
Consensus pattern (165 bp):
TTTTCAAAATACGAAGTTTTCTACTCTCGTAAATTCTTTCAGAGGGATTTTTCTTGGTTTTGATT
TTTAAAATTTATCAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTT
CAATAAATTTTGAATTTTTTCCTTGAAATCTCTTT
Found at i:2067978 original size:164 final size:164
Alignment explanation
Indices: 2067069--2067955 Score: 737
Period size: 165 Copynumber: 5.4 Consensus size: 164
2067059 AGATTTTCTT
* * * * * * *
2067069 CTCCGTAAATT-TTTTAGAGAGGATTTTTCTCGGTTTTTAATTTTAAAAATTCAT-TAAATATTA
1 CTCCATAAATTCTTTTGGAGA-AATTTTTCTTGATTTTTAATTTTTAAAATTTATCT-AATATTA
* ** * * * *
2067132 TTTTTTAACTCACATTAAATT-AGTTTTC-AAAATTTATTCATCTT-CATAAAATTTGGAATTTT
64 TTATTTATTTCATATT-AATTCATTTTTCAAAAATTCATTCAT-TTCCAT--AATTTTGAATTTT
* * * *
2067194 TTCTTTGAAACTCTCTTTTTTTCAAAATACGAA-TTTTTCTA
125 TTCCTTGAAATTC-CCTTTTTCCAAAATACGAAGTTTTT-TA
* * * * * ** * * * * * *
2067235 TTTCGTAAATTTTTTTTGAAGGGATTTTCCTTGGTTTTTGATTTTTAAAATTAATCAAATATGAT
1 CTCCATAAA-TTCTTTTGGAGAAATTTTTCTTGATTTTTAATTTTTAAAATTTATCTAATATTAT
* * *
2067300 TAATTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCAATGAATTTTGAATTTTTTCC
65 TATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTCCAT-AATTTTGAATTTTTTCC
** * * * *
2067365 TTGAAA-TCTTTTTTTTTCGAAATATCG-CGTTTTCTA
129 TTGAAATTC-CCTTTTTCCAAAATA-CGAAGTTTTTTA
** * * * * * * *
2067401 CTCTGTAAATTCTTTCAGGGGAGATTTTTCTTG-GTTTTGATTTTTAAAACTTATCAAATATTAT
1 CTCCATAAATTCTTT-TGGAGAAATTTTTCTTGATTTTTAATTTTTAAAATTTATCTAATATTAT
**
2067465 TATTTATTTTTTATTAATTCAGTTTTT-AAAAATTCATTCATTTCCATGAATTTTGAATTTTTT-
65 TATTTATTTCATATTAATTCA-TTTTTCAAAAATTCATTCATTTCCAT-AATTTTGAATTTTTTC
*
2067528 CTTGAAA-TCCCTTTTTTTCAAAATACGAAGTTTTTTA
128 CTTGAAATTCCC-TTTTTCCAAAATACGAAGTTTTTTA
* * * *
2067565 CTCCATAAATTCTTTTGGGGAGATTTTTTCTTGATTTTTGATTTTTAAAATTTATCAAATATTAT
1 CTCCATAAATTCTTTTGGAGA-AATTTTTCTTGATTTTTAATTTTTAAAATTTATCTAATATTAT
* * * *
2067630 TATTTATTTCTTATTAATTTATTTTTCAAAAATTCATTCGTTTCCAAAAATTTTGAATTTTTTCC
65 TATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTCC-ATAATTTTGAATTTTTTCC
* *
2067695 TTGAAATTTCCTTTTTCCTAAATACGAAGTTTTTTA
129 TTGAAATTCCCTTTTTCCAAAATACGAAGTTTTTTA
* * *** ** *
2067731 CTTCGTAAATTCTTTCACAGGTATTTTTCTTG-TTTTTTATTTTTAAAATTTAT-TAAATATTAT
1 CTCCATAAATTCTTTTGGAGAAATTTTTCTTGATTTTTAATTTTTAAAATTTATCT-AATATTAT
* * *
2067794 TATTTATTTCATATTAATTCAATTTTCAAAAAATCATTCATTTCCATAATTTTAAATTTTTTCCT
65 TATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTCCATAATTTTGAATTTTTTCCT
* *
2067859 TGAAATTCCCTTTTCTCCAAAAAACTG-AG-TTTCTA
130 TGAAATTCCCTTTT-TCCAAAATAC-GAAGTTTTTTA
* * ** *
2067894 CTCCATAAAATT-TTTTGGAGAAATATTTCTCGATTTAAAATTTTTAAAATTCATCTAATATT
1 CTCCAT-AAATTCTTTTGGAGAAATTTTTCTTGATTTTTAATTTTTAAAATTTATCTAATATT
2067956 TTCATTGAAC
Statistics
Matches: 599, Mismatches: 98, Indels: 50
0.80 0.13 0.07
Matches are distributed among these distances:
163 60 0.10
164 161 0.27
165 176 0.29
166 96 0.16
167 86 0.14
168 20 0.03
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (164 bp):
CTCCATAAATTCTTTTGGAGAAATTTTTCTTGATTTTTAATTTTTAAAATTTATCTAATATTATT
ATTTATTTCATATTAATTCATTTTTCAAAAATTCATTCATTTCCATAATTTTGAATTTTTTCCTT
GAAATTCCCTTTTTCCAAAATACGAAGTTTTTTA
Found at i:2068895 original size:13 final size:13
Alignment explanation
Indices: 2068877--2068916 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
2068867 AATATAAAGC
2068877 TTGTGTTTTTTTT
1 TTGTGTTTTTTTT
2068890 TTGTGTTTTTTTT
1 TTGTGTTTTTTTT
2068903 TTGTGTTTGTTTTT
1 TTGTGTTT-TTTTT
2068917 CTCTATTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.82
Consensus pattern (13 bp):
TTGTGTTTTTTTT
Found at i:2070054 original size:354 final size:354
Alignment explanation
Indices: 2069407--2070408 Score: 1854
Period size: 354 Copynumber: 2.8 Consensus size: 354
2069397 AAAGTTTAGG
2069407 ACTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGC-T---TAG--GGTGGAG
1 ACTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
*
2069466 GATTCGACATATGTGGGGATGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
66 GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
*
2069531 CAATCTACACCTATCTAACGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
131 CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
*
2069596 CCTACAAACTTATTTTTTTCCATCGGAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
196 CCTACAAACTCATTTTTTTCCATCGGAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
*
2069661 ATCACCCAAAGGTCATAACATGCGGTCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCC
261 ATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCC
2069726 TGATACTCAGAAACGGCCAAAGAGGGGCA
326 TGATACTCAGAAACGGCCAAAGAGGGGCA
* *
2069755 GCTGTAGACACCTTATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
1 ACTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
2069820 GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
66 GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
2069885 CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
131 CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
*
2069950 CCTACAAACTCATTTTTTTCCATCGGAACCGCCGCCAATAGACTCTTCATCACGGCGAAGCATTA
196 CCTACAAACTCATTTTTTTCCATCGGAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
*
2070015 ATCACCCAAAGGTCATAACATGCGGCCGCGGATAAAATGGTGTCTATTTGTCTTTGGCCTGTTCC
261 ATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCC
2070080 TGATACTCAGAAACGGCCAAAGAGGGGCA
326 TGATACTCAGAAACGGCCAAAGAGGGGCA
*
2070109 ACTATAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
1 ACTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
2070174 GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
66 GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
2070239 CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
131 CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
*
2070304 CCTACAAACTCATTTTTTTCCATCGAAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
196 CCTACAAACTCATTTTTTTCCATCGGAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
* *
2070369 ATCACCCAAAGGTCATAACATGCGACCGCAGACAAAATGG
261 ATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGG
2070409 CAAAGCATTA
Statistics
Matches: 632, Mismatches: 16, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
348 46 0.07
349 1 0.00
352 3 0.00
354 582 0.92
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (354 bp):
ACTGTAGACACCTCATTTTGTCCGGGCCAATTTTCGACAATTTGAGGCTTAGCTAGTAGGTGGAG
GATTCGACATATGTGGGGACGAATATGTCCCTATATTCTTCCAAAATCCCTTCCAAACTCTACAC
CAATCTACACCTATCTAAGGAGGTCAAGCCTTAGAAAATTCCAAAACCTAGTAGGGAGGACAAAC
CCTACAAACTCATTTTTTTCCATCGGAACCGTCGCCAATAGACTCTTCATCACGGCGAAGCATTA
ATCACCCAAAGGTCATAACATGCGGCCGCGGACAAAATGGTGTCTATTTGTCTTTGGCCTGTTCC
TGATACTCAGAAACGGCCAAAGAGGGGCA
Found at i:2073169 original size:162 final size:161
Alignment explanation
Indices: 2072996--2073458 Score: 667
Period size: 160 Copynumber: 2.9 Consensus size: 161
2072986 AAAATTAAAC
* * *
2072996 AATATTTATTTTTTCTAATCTTTTATATTCCTAAGGGCATCCGCAGGGGTATAAAAGGTTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAA
* * * * * * *
2073061 AACTTTTTGTATTCTTTCGGGCTTCCATTAGGGTACAAAATGATATTTTCAAATATAAGTAAAAT
66 AACCTTTCGTATTCTTTTGGACTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAA-TAAAAT
2073126 TAAATTAAATTGAAATTATCAGGATAAATTCT
130 TAAATTAAATTGAAATTATCAGGATAAATTCT
*
2073158 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAA
* * * *
2073223 AACCTTTCATATTCTTTTGGATTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAA-ATAATT
66 AACCTTTCGTATTCTTTTGGACTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAATAAAATT
** **
2073287 AAATTAAATTGGTATTATTGGGATAAATTCT
131 AAATTAAATTGAAATTATCAGGATAAATTCT
* * * *
2073318 AATATCTATTTTTTCTAATCTTTTATATTCCTATGTGCATTCGTAAGGGTATAAAAGATTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAA
*
2073383 AACCTTTCGTATTCTTTTGGACTTCCATTAGGGCACGAAATGGTATTTTCAAAAATAAATAAAAT
66 AACCTTTCGTATTCTTTTGGACTTCCATTAGGGTACGAAATGGTATTTTCAAAAAT-AATAAAAT
* *
2073448 TGAATTGAATT
130 TAAATTAAATT
2073459 AATACTTTTG
Statistics
Matches: 268, Mismatches: 31, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
160 144 0.54
161 2 0.01
162 122 0.46
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (161 bp):
AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAA
AACCTTTCGTATTCTTTTGGACTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAATAAAATT
AAATTAAATTGAAATTATCAGGATAAATTCT
Found at i:2074043 original size:155 final size:156
Alignment explanation
Indices: 2073763--2074113 Score: 370
Period size: 155 Copynumber: 2.3 Consensus size: 156
2073753 ATTGGGTATT
* * ** * * *
2073763 TTTACGTCAAAGGAATCCCCTAGGGGTGTTTTCGTAATTTTTTAGAAGCGAGTCCTAGGTTGTCA
1 TTTACGTCGAAGGTATCCTTTAGGGGTATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCA
* * * ** **
2073828 TCGGGTCCACTTTTATGTCGAAGGTAGATATTTGGGATAAGTTCATTTCATCTATTATCCTCTTT
66 TCGGGTCCACTTTCAAGTCGAAGGTAGATATTTAGGATAAGTTCATCCCATCTAAAATCCTCTTT
2073893 AAGT-CCTTTA-GAGGTACC-AGGTACC
131 AAGTACCTTTAGGA-GTACCGA-GTACC
* *
2073918 TTTACGTCGAAGGTATCCTTTAGGGGCATTTTGGTAATTTCTTAGAACCGAGTCCTAGGTTGTCA
1 TTTACGTCGAAGGTATCCTTTAGGGGTATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCA
* * * * * *
2073983 -CTGGGTCCACTTTCAAG-CTGAAGGTGGGTATTTAGGATAGGTTCATCCCTTTTAAAATCCTTT
66 TC-GGGTCCACTTTCAAGTC-GAAGGTAGATATTTAGGATAAGTTCATCCCATCTAAAATCCTCT
** * *
2074046 TTAAGTATTTTTAGGAGTATCGAGTACT
129 TTAAGTACCTTTAGGAGTACCGAGTACC
* * *
2074074 TTTACGTCGAAAGTATTCTTTAGGGATATTTTCGTAATTT
1 TTTACGTCGAAGGTATCCTTTAGGGGTATTTTCGTAATTT
2074114 TTTTTGAACT
Statistics
Matches: 160, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
154 2 0.01
155 108 0.68
156 47 0.29
157 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.38
Consensus pattern (156 bp):
TTTACGTCGAAGGTATCCTTTAGGGGTATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCA
TCGGGTCCACTTTCAAGTCGAAGGTAGATATTTAGGATAAGTTCATCCCATCTAAAATCCTCTTT
AAGTACCTTTAGGAGTACCGAGTACC
Found at i:2076838 original size:127 final size:127
Alignment explanation
Indices: 2076636--2076999 Score: 536
Period size: 129 Copynumber: 2.8 Consensus size: 127
2076626 CAAAAAGTGC
* * *
2076636 CATTTCGCACCTTAATGGAAACCC-ACAAAGATACGAAAAGCTTTTGAAATCTTTTATACCCCTA
1 CATTTCGTACCTTAATGGATACCCGA-AAAGATACGAAAAGTTTTTGAAATCTTTTATACCCCTA
* *
2076700 CGGATACCCATAGGAATATAAAAATTAAAAATGATTAACATTTATTTATG-TTTGAAAAAAAT
65 CGGATACCCATAGGAATATAAAAATTAAAAACGATTAATATTTATTTATGTTTTGAAAAAAAT
* *
2076762 CATTTCGTACCTTAATGGATACCCGAAAAGATAGGAAACA-TTTTTCAGAATCTTTTATACCCCT
1 CATTTCGTACCTTAATGGATACCCGAAAAGATACGAAA-AGTTTTTGA-AATCTTTTATACCCCT
*
2076826 ACGGATACCCATAGGAATATAAAAGATTAAAAACAATTAATATTTATTTATGTTTTGAAAAAAAT
64 ACGGATACCCATAGGAATATAAAA-ATTAAAAACGATTAATATTTATTTATGTTTTGAAAAAAAT
* * *
2076891 GATTTCGTACCTTAATGGATACCCGAAAAGATACAAAAAAGTTTTTGAAATCTTTTATACCACTA
1 CATTTCGTACCTTAATGGATACCCGAAAAGATAC-GAAAAGTTTTTGAAATCTTTTATACCCCTA
* *
2076956 TGGATACCCACAGGAATATAAGAAATTAAAAACGATTAATATTT
65 CGGATACCCATAGGAATATAA-AAATTAAAAACGATTAATATTT
2077000 GTTGTAATTA
Statistics
Matches: 214, Mismatches: 16, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
126 38 0.18
127 42 0.20
128 24 0.11
129 99 0.46
130 11 0.05
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (127 bp):
CATTTCGTACCTTAATGGATACCCGAAAAGATACGAAAAGTTTTTGAAATCTTTTATACCCCTAC
GGATACCCATAGGAATATAAAAATTAAAAACGATTAATATTTATTTATGTTTTGAAAAAAAT
Found at i:2078846 original size:25 final size:26
Alignment explanation
Indices: 2078810--2078859 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
2078800 TTAGCAAAAA
2078810 AAAAAAAGGAAAGAAAAGAG-AGAAAG
1 AAAAAAAGGAAA-AAAAGAGAAGAAAG
*
2078836 AAAAAAA-GAAAAAAATAGAAGAAA
1 AAAAAAAGGAAAAAAAGAGAAGAAA
2078860 ATATAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 9 0.41
26 7 0.32
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (26 bp):
AAAAAAAGGAAAAAAAGAGAAGAAAG
Found at i:2078855 original size:10 final size:10
Alignment explanation
Indices: 2078836--2078877 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 10
2078826 AGAGAGAAAG
2078836 AAAAAA-AGA
1 AAAAAATAGA
2078845 AAAAAATAGA
1 AAAAAATAGA
2078855 AGAAAATATAGA
1 A-AAAA-ATAGA
2078867 AAAGAAATAGA
1 AAA-AAATAGA
2078878 TAAGCTAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 6 0.21
10 4 0.14
11 11 0.38
12 8 0.28
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (10 bp):
AAAAAATAGA
Found at i:2078855 original size:22 final size:24
Alignment explanation
Indices: 2078830--2078877 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
2078820 AAGAAAAGAG
2078830 AGAAAGAAAA-AAAGAAAA-AAAT
1 AGAAAGAAAATAAAGAAAAGAAAT
*
2078852 AG-AAGAAAATATAGAAAAGAAAT
1 AGAAAGAAAATAAAGAAAAGAAAT
2078875 AGA
1 AGA
2078878 TAAGCTAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.32
22 9 0.41
23 6 0.27
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (24 bp):
AGAAAGAAAATAAAGAAAAGAAAT
Found at i:2080271 original size:159 final size:161
Alignment explanation
Indices: 2079959--2080418 Score: 622
Period size: 159 Copynumber: 2.9 Consensus size: 161
2079949 AATTAAACAG
* * * *
2079959 TATTTATTTTTTCTAATCTTTTATATTTCTATGGACATCTGTAGGGGGTATAAAAGGTTTCAAAA
1 TATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTA-GGGGTATAAAAGATTTCAAAA
** * * * *
2080024 ATTTTTCGTATTCTTTCGAGCTTTTATTAGGGTACGAAATGGTATTTTTAAAAATAAGTAAAATT
65 ACCTTTCATATTCTTTCGGGCTTTTATTAGGGTACGAAATGATATTTTTAAAAATAA--ATAATT
2080089 AAATTAAA-TTGATATTATCGGGATAAATTCTAA
128 AAATTAAATTTGATATTATCGGGATAAATTCTAA
* *** *
2080122 TATTTATTTTTTCTAATATTTTATATTCCTATGGGCATCCGTAAAAGTAGAAAAGATTTCAAAAA
1 TATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAA
* * *
2080187 CCTTTCTTATTCTTTCGGGCTTCTATTA-GGTACAAAATGATATTTTTAAAAATAAATAATTAAA
66 CCTTTCATATTCTTTCGGGCTTTTATTAGGGTACGAAATGATATTTTTAAAAATAAATAATTAAA
*
2080251 TTAAATTTG-TATTATTGGGATAAATTCTAA
131 TTAAATTTGATATTATCGGGATAAATTCTAA
* * *
2080281 TATCTATTTTTTCTTATCTTTTATATTCCTAT-GGCATTCGTAGGGGTATAAAAGATTTCAAAAA
1 TATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAA
* *
2080345 CCTTTCATATTCTTTCGGGCTTTTATTATGGTACGAAATGATATTTTCAAAAATAAATAAAATTA
66 CCTTTCATATTCTTTCGGGCTTTTATTAGGGTACGAAATGATATTTTTAAAAATAAAT--AATTA
*
2080410 AATTGAATT
129 AATTAAATT
2080419 AATCTTTCGA
Statistics
Matches: 262, Mismatches: 31, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
158 53 0.20
159 89 0.34
160 3 0.01
161 38 0.15
162 40 0.15
163 39 0.15
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (161 bp):
TATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGATTTCAAAAA
CCTTTCATATTCTTTCGGGCTTTTATTAGGGTACGAAATGATATTTTTAAAAATAAATAATTAAA
TTAAATTTGATATTATCGGGATAAATTCTAA
Found at i:2085929 original size:89 final size:89
Alignment explanation
Indices: 2085816--2085993 Score: 347
Period size: 89 Copynumber: 2.0 Consensus size: 89
2085806 GCAAATGTCA
2085816 TTATAAGAAAGCTTTCTTAACAACTAATTGTAGATTCTCCTAGAAAGCTTTTGTATAATAAAATC
1 TTATAAGAAAGCTTTCTTAACAACTAATTGTAGATTCTCCTAGAAAGCTTTTGTATAATAAAATC
2085881 ATTGTGCATTGCTATTAATTTGCT
66 ATTGTGCATTGCTATTAATTTGCT
*
2085905 TTATAAGAAAGCTTTCTTAACAACTAATTGTAGATTCTCCTAGAAAGCTTTTGTATAATAAGATC
1 TTATAAGAAAGCTTTCTTAACAACTAATTGTAGATTCTCCTAGAAAGCTTTTGTATAATAAAATC
2085970 ATTGTGCATTGCTATTAATTTGCT
66 ATTGTGCATTGCTATTAATTTGCT
2085994 CGTGATCAAC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (89 bp):
TTATAAGAAAGCTTTCTTAACAACTAATTGTAGATTCTCCTAGAAAGCTTTTGTATAATAAAATC
ATTGTGCATTGCTATTAATTTGCT
Found at i:2086920 original size:22 final size:22
Alignment explanation
Indices: 2086890--2086970 Score: 83
Period size: 22 Copynumber: 3.7 Consensus size: 22
2086880 GTTTTTGAAT
2086890 AAAACAATATATACATATAGTA
1 AAAACAATATATACATATAGTA
* * *
2086912 AAAATAATATGTACATATAG-C
1 AAAACAATATATACATATAGTA
* * * *
2086933 ATAACTATTTACACATATAGTA
1 AAAACAATATATACATATAGTA
*
2086955 AAAACAATGTATACAT
1 AAAACAATATATACAT
2086971 GTAGCCCAAA
Statistics
Matches: 44, Mismatches: 14, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
21 14 0.32
22 30 0.68
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (22 bp):
AAAACAATATATACATATAGTA
Found at i:2088722 original size:11 final size:11
Alignment explanation
Indices: 2088706--2088745 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
2088696 AAGGTTAACT
2088706 AAAAAAAAGAA
1 AAAAAAAAGAA
2088717 AAAAAAAGAGAA
1 AAAAAAA-AGAA
*
2088729 AAAAAAGAGAA
1 AAAAAAAAGAA
2088740 AGAAAA
1 A-AAAA
2088746 GAGAGAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 12 0.46
12 14 0.54
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:2088734 original size:22 final size:24
Alignment explanation
Indices: 2088706--2088752 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
2088696 AAGGTTAACT
2088706 AAAAAAA-AGAAA-AAAAAAGAGA
1 AAAAAAAGAGAAAGAAAAAAGAGA
*
2088728 AAAAAAAGAGAAAGAAAAGAGAGA
1 AAAAAAAGAGAAAGAAAAAAGAGA
2088752 A
1 A
2088753 GAAATAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.32
23 5 0.23
24 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (24 bp):
AAAAAAAGAGAAAGAAAAAAGAGA
Found at i:2088745 original size:12 final size:12
Alignment explanation
Indices: 2088707--2088756 Score: 59
Period size: 11 Copynumber: 4.2 Consensus size: 12
2088697 AGGTTAACTA
* *
2088707 AAAAAAAGAAAA
1 AAAAAGAGAAAG
2088719 AAAAAGAGAAA-
1 AAAAAGAGAAAG
2088730 AAAAAGAGAAAG
1 AAAAAGAGAAAG
2088742 -AAAAGAGAGAAG
1 AAAAAGAGA-AAG
2088754 AAA
1 AAA
2088757 TAGAAACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
11 19 0.56
12 13 0.38
13 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:2088746 original size:11 final size:11
Alignment explanation
Indices: 2088706--2088749 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
2088696 AAGGTTAACT
2088706 AAAAAAAAGA-
1 AAAAAAAAGAG
2088716 AAAAAAAAGAG
1 AAAAAAAAGAG
2088727 AAAAAAAAGAG
1 AAAAAAAAGAG
*
2088738 AAAGAAAAGAG
1 AAAAAAAAGAG
2088749 A
1 A
2088750 GAAGAAATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:2090608 original size:97 final size:97
Alignment explanation
Indices: 2090449--2090695 Score: 359
Period size: 97 Copynumber: 2.5 Consensus size: 97
2090439 AATTTTATTT
* * * *
2090449 ATCGGGGATACTCCAACCTTATTCCTCCGAGGGGATACTCCAACCCCGTTTTTAAACACATCAAA
1 ATCGGGGACACTCCAACCATATTCCTCCGAGGGGATACTCAAACCCCATTTTTAAACACATCAAA
2090514 GTTTAAATCTTATTCTCACTTAAATTGTCACC
66 GTTTAAATCTTATTCTCACTTAAATTGTCACC
* ** ** * * * *
2090546 ATCGGGGACACTTCAACCCCATTCCTCTAAGGAGATACTCTAACCCCACTTTTAAACGCATCAAA
1 ATCGGGGACACTCCAACCATATTCCTCCGAGGGGATACTCAAACCCCATTTTTAAACACATCAAA
* *
2090611 GTTTAAATTTTATTCTCACTTAAATTGTCATC
66 GTTTAAATCTTATTCTCACTTAAATTGTCACC
2090643 ATCGGGGACACTCCAACCATATTCCTCCGAGGGGATACTCAAACCCCATTTTT
1 ATCGGGGACACTCCAACCATATTCCTCCGAGGGGATACTCAAACCCCATTTTT
2090696 CAATCAAAAA
Statistics
Matches: 129, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
97 129 1.00
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (97 bp):
ATCGGGGACACTCCAACCATATTCCTCCGAGGGGATACTCAAACCCCATTTTTAAACACATCAAA
GTTTAAATCTTATTCTCACTTAAATTGTCACC
Found at i:2095435 original size:23 final size:23
Alignment explanation
Indices: 2095378--2095447 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
2095368 CAAAATGACG
**
2095378 AAAAAGT-CAAAAAGAAAAAGCACG
1 AAAAAGTGC-AAAAGAAAAA-CAAA
2095402 AAAAA-TG-AAAAGAAAAACAAA
1 AAAAAGTGCAAAAGAAAAACAAA
* *
2095423 AAAAAGTGCAAAAGCAAAATAAA
1 AAAAAGTGCAAAAGAAAAACAAA
2095446 AA
1 AA
2095448 GGGAACAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.18
22 12 0.31
23 15 0.38
24 5 0.13
ACGTcount: A:0.73, C:0.09, G:0.13, T:0.06
Consensus pattern (23 bp):
AAAAAGTGCAAAAGAAAAACAAA
Found at i:2096957 original size:32 final size:27
Alignment explanation
Indices: 2096804--2097038 Score: 245
Period size: 28 Copynumber: 8.4 Consensus size: 27
2096794 TTTCTTTTCA
* *
2096804 AAGTCCATAAATCCATGGCATCCTTTT
1 AAGTCCACAACTCCATGGCATCCTTTT
*
2096831 AAGTCCACAACTCTATGGCATCCTTTT
1 AAGTCCACAACTCCATGGCATCCTTTT
*** * *
2096858 AAAGTCTGTAACTCCGTGGCATCCCTTTA
1 -AAGTCCACAACTCCATGGCAT-CCTTTT
* *
2096887 AAGTCCATAACTCCATGGCATCCCTTTA
1 AAGTCCACAACTCCATGGCAT-CCTTTT
2096915 AAGTCCACAACTCCATGGCATGACATTCTTTT
1 AAGTCCACAACTCCATGGCAT--C---CTTTT
*
2096947 AAGTCTACAACTCCATGGCATCCTTTT
1 AAGTCCACAACTCCATGGCATCCTTTT
* *
2096974 AAGTCCACAACTCCGTGGCATCTTTTT
1 AAGTCCACAACTCCATGGCATCCTTTT
* *
2097001 AAAGTCCACAACTCCGTAGCATCCTTTT
1 -AAGTCCACAACTCCATGGCATCCTTTT
*
2097029 AAGCCCACAA
1 AAGTCCACAA
2097039 GTCAGTAGCA
Statistics
Matches: 179, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
27 62 0.35
28 86 0.48
29 6 0.03
30 1 0.01
32 24 0.13
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (27 bp):
AAGTCCACAACTCCATGGCATCCTTTT
Found at i:2097066 original size:55 final size:55
Alignment explanation
Indices: 2096953--2097122 Score: 162
Period size: 55 Copynumber: 3.1 Consensus size: 55
2096943 TTTTAAGTCT
* * * * * **
2096953 ACAACTCCATGGCATCCTTTTAAGTCCACAACTCCGTGGCATCTTTTTAAAG-TCC
1 ACAACTCCATGGCATCCTTTTAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCT-C
* * *
2097008 ACAACTCCGTAGCATCCTTTTAAGCCCACAAGTCAGTAGCACCCTTCCAAAGCTC
1 ACAACTCCATGGCATCCTTTTAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCTC
* ** * * * *
2097063 ACAAATTAATGGCATTCTTTCAAAGCCCACAAGTCAGTGGCACTCTTCCAAAGCCC
1 ACAACTCCATGGCATCCTTT-TAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCTC
2097119 ACAA
1 ACAA
2097123 GTCAGTGGCA
Statistics
Matches: 93, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
55 57 0.61
56 36 0.39
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (55 bp):
ACAACTCCATGGCATCCTTTTAAGCCCACAAGTCAGTGGCACCCTTCCAAAGCTC
Found at i:2097086 original size:28 final size:28
Alignment explanation
Indices: 2097029--2097556 Score: 277
Period size: 28 Copynumber: 18.6 Consensus size: 28
2097019 GCATCCTTTT
* *
2097029 AAGCCCACAAGTCAGTAGCACCCTTCCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
* * * * * *
2097057 AAGCTCACAAATTAATGGCATTCTTTCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
2097085 AAGCCCACAAGTCAGTGGCACTCTTCCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
2097113 AAGCCCACAAGTCAGTGGCACTCTTCCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
* *
2097141 AAGCCCACAAGTCCACAAATCAGTGGCACCTTTTCGA
1 AAGCCCACAAG--------TCAGTGGCA-CTCTTCCA
* * * * **
2097178 AAGCCCCCAAATTAGTGGCACCCTTTTA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
*
2097206 AAGCCCACAAGTCAGTGGCA-TCCTTTCA
1 AAGCCCACAAGTCAGTGGCACT-CTTCCA
* * * * *
2097234 AAGTCCATAAATCAGTAGCACCTTTTCC-
1 AAGCCCACAAGTCAGTGGCA-CTCTTCCA
* * * **
2097262 AAGTCCACAAATTAGTGGCACAT-TTTTA
1 AAGCCCACAAGTCAGTGGCAC-TCTTCCA
* * * *
2097290 AAGCCCATAAGTCAGTAGCATCTTTTCAA
1 AAGCCCACAAGTCAGTGGCA-CTCTTCCA
* * *
2097319 AAACCCATAAGTCAGTGGCACAT-TTTCA
1 AAGCCCACAAGTCAGTGGCAC-TCTTCCA
* *
2097347 AAGCCCACAAGTCATTGGCAC-CTTTCGA
1 AAGCCCACAAGTCAGTGGCACTC-TTCCA
* * ** * *
2097375 GAGCCCACAAGTTAGCAGC-TTCCTTTTCA
1 AAGCCCACAAGTCAGTGGCACT-C-TTCCA
* * * **
2097404 AAGCCTACAAGTCAATGCCA-TCCTTTTA
1 AAGCCCACAAGTCAGTGGCACT-CTTCCA
*
2097432 AAGCCCACAAGTCAGTGGCAC-CTTTCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
* * * *
2097459 AAGCCCTCAAGTTAGTGGAAC-CTTTCA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
* * *
2097486 AAACCCACAAGTTAGTGGCACT-TTCAA
1 AAGCCCACAAGTCAGTGGCACTCTTCCA
* * **
2097513 AAGCCAACAAGTCAATGGCAC-CTTTTTA
1 AAGCCCACAAGTCAGTGGCACTC-TTCCA
2097541 AAGCCCACAAGTCAGT
1 AAGCCCACAAGTCAGT
2097557 AGCAACCCTT
Statistics
Matches: 383, Mismatches: 91, Indels: 52
0.73 0.17 0.10
Matches are distributed among these distances:
27 70 0.18
28 234 0.61
29 54 0.14
30 1 0.00
36 9 0.02
37 15 0.04
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.23
Consensus pattern (28 bp):
AAGCCCACAAGTCAGTGGCACTCTTCCA
Found at i:2097209 original size:65 final size:64
Alignment explanation
Indices: 2097089--2097218 Score: 170
Period size: 65 Copynumber: 2.0 Consensus size: 64
2097079 CTTTCAAAGC
* * *
2097089 CCACAAGTCAGTGGCACTCTTCCAAAGCCCACAAGTCAGTGGCACTCTTCCAAAGCCCACAAGT
1 CCACAAATCAGTGGCACTCTTCCAAAGCCCACAAATCAGTGGCACCCTTCCAAAGCCCACAAGT
* * * * **
2097153 CCACAAATCAGTGGCACCTTTTCGAAAGCCCCCAAATTAGTGGCACCCTTTTAAAGCCCACAAGT
1 CCACAAATCAGTGGCA-CTCTTCCAAAGCCCACAAATCAGTGGCACCCTTCCAAAGCCCACAAGT
2097218 C
1 C
2097219 AGTGGCATCC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
64 15 0.27
65 41 0.73
ACGTcount: A:0.30, C:0.35, G:0.16, T:0.19
Consensus pattern (64 bp):
CCACAAATCAGTGGCACTCTTCCAAAGCCCACAAATCAGTGGCACCCTTCCAAAGCCCACAAGT
Found at i:2097249 original size:121 final size:120
Alignment explanation
Indices: 2097033--2097271 Score: 284
Period size: 121 Copynumber: 2.0 Consensus size: 120
2097023 CCTTTTAAGC
* * **
2097033 CCACAAGTCAGTAGCACCCTTCCAAAGCTCACAAATTAATGGCATTCTTTCAAAGCCCACAAGTC
1 CCACAAATCAGTAGCACCCTTCCAAAGCCCACAAATTAATGGCACCCTTTCAAAGCCCACAAGTC
* *
2097098 AGTGGCACTCTTCCAAAGCCCACAAGTCAGTGGCA-CTCTTCCAAAGCCCACAAGT
66 AGTGGCACTCTTCCAAAGCCCACAAATCAGTAGCACCTCTTCC-AAGCCCACAAGT
* * * * * *
2097153 CCACAAATCAGTGGCACCTTTTCGAAAGCCCCCAAATTAGTGGCACCCTTTTAAAGCCCACAAGT
1 CCACAAATCAGTAGCACC-CTTCCAAAGCCCACAAATTAATGGCACCCTTTCAAAGCCCACAAGT
* * * * *
2097218 CAGTGGCA-TCCTTTCAAAGTCCATAAATCAGTAGCACCTTTTCCAAGTCCACAA
65 CAGTGGCACT-CTTCCAAAGCCCACAAATCAGTAGCACCTCTTCCAAGCCCACAA
2097272 ATTAGTGGCA
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
120 17 0.17
121 76 0.77
122 6 0.06
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (120 bp):
CCACAAATCAGTAGCACCCTTCCAAAGCCCACAAATTAATGGCACCCTTTCAAAGCCCACAAGTC
AGTGGCACTCTTCCAAAGCCCACAAATCAGTAGCACCTCTTCCAAGCCCACAAGT
Found at i:2097368 original size:113 final size:113
Alignment explanation
Indices: 2097148--2097579 Score: 272
Period size: 113 Copynumber: 3.8 Consensus size: 113
2097138 CCAAAGCCCA
* * * * *
2097148 CAAGTCCACAAATCAGTGGCACCTTTTCGAAAGCCCCCAAATTAGTGGCACCCTTTTAAAGCCCA
1 CAAGTCCACAAATCAGTGGCACATTTTCGAAAGCCCACAAATCAGTAGCACCCTTTTAAAACCCA
* *
2097213 CAAGTCAGTGGCATCCTTTCAAAGTCCATAAATCAGTAGCACCTTTTC
66 CAAGTCAGTGGCATCCTTTCAAAGCCCACAAATCAGTAGCACCTTTTC
* * * * *
2097261 CAAGTCCACAAATTAGTGGCACATTTT-TAAAGCCCATAAGTCAGTAGCA-TCTTTTCAAAAACC
1 CAAGTCCACAAATCAGTGGCACATTTTCGAAAGCCCACAAATCAGTAGCACCCTTTT--AAAACC
* * * * *
2097324 CATAAGTCAGTGGCA-CATTTTCAAAGCCCACAAGTCATTGGCACC-TTTC
64 CACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAATCAGTAGCACCTTTTC
* * * * ** * * * * * * *
2097373 GAGAGCCCACAAGTTAGCAGCTTCCTTTTC-AAAGCCTACAAGTCAAT-GCCATCCTTTTAAAGC
1 CA-AGTCCACAAATCAGTGGC-ACATTTTCGAAAGCCCACAAATCAGTAG-CACCCTTTTAAAAC
* * * * *
2097436 CCACAAGTCAGTGGCA-CCTTTCAAAGCCCTCAAGTTAGTGGAACC-TTTC
63 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAATCAGTAGCACCTTTTC
* ** * * * * * * * * *
2097485 AAAACCCACAAGTTAGTGGCAC--TTTCAAAAGCCAACAAGTCAATGGCACCTTTTTAAAGCCCA
1 CAAGTCCACAAATCAGTGGCACATTTTCGAAAGCCCACAAATCAGTAGCACCCTTTTAAAACCCA
* * *
2097548 CAAGTCAGTAGCAACCCTTTTCAAAGCTCACA
66 CAAGTCAGTGGC-ATCC-TTTCAAAGCCCACA
2097580 CAAGTTGGTT
Statistics
Matches: 260, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
108 4 0.02
109 42 0.16
110 3 0.01
111 22 0.08
112 62 0.24
113 101 0.39
114 21 0.08
115 5 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (113 bp):
CAAGTCCACAAATCAGTGGCACATTTTCGAAAGCCCACAAATCAGTAGCACCCTTTTAAAACCCA
CAAGTCAGTGGCATCCTTTCAAAGCCCACAAATCAGTAGCACCTTTTC
Found at i:2097381 original size:85 final size:84
Alignment explanation
Indices: 2097153--2097560 Score: 378
Period size: 85 Copynumber: 4.9 Consensus size: 84
2097143 GCCCACAAGT
* * * *
2097153 CCACAAATCAGTGGCACCTTTTCGAAAGCCCCCAAATTAGTGGCACCCTTT-TAAAGCCCACAAG
1 CCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCA-CCTTTCTAAAGCCCACAAG
* **
2097217 TCAGTGGCATCCTTTCAAAGT
64 TCAGTAGCATCCTTTCAAAAC
* * * * * * * * * *
2097238 CCATAAATCAGTAGCACCTTTTCCAAGTCCACAAATTAGTGGCACATTTTTAAAGCCCATAAGTC
1 CCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCTAAAGCCCACAAGTC
*
2097303 AGTAGCATCTTTTCAAAAAC
66 AGTAGCATCCTTTC-AAAAC
* * * * * *
2097323 CCATAAGTCAGTGGCACATTTTCAAAGCCCACAAGTCATTGGCACCTTTCGAGAGCCCACAAGTT
1 CCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCTAAAGCCCACAAGTC
* * *
2097388 AGCAGCTTCCTTTTCAAAGC
66 AGTAGCATCC-TTTCAAAAC
* * * *
2097408 CTACAAGTCAATGCCATCCTTTT-AAAGCCCACAAGTCAGTGGCACCTTTC-AAAGCCCTCAAGT
1 CCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCTAAAGCCCACAAGT
* * *
2097471 TAGT-GGAACCTTTCAAAAC
65 CAGTAGCATCCTTTCAAAAC
* * * *
2097490 CCACAAGTTAGTGGCA-C-TTTCAAAAGCCAACAAGTCAATGGCACCTTTTTAAAGCCCACAAGT
1 CCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCACCTTTCTAAAGCCCACAAGT
2097553 CAGTAGCA
65 CAGTAGCA
2097561 ACCCTTTTCA
Statistics
Matches: 263, Mismatches: 52, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
79 3 0.01
80 1 0.00
81 24 0.09
82 35 0.13
83 9 0.03
84 58 0.22
85 124 0.47
86 9 0.03
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (84 bp):
CCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTCTAAAGCCCACAAGTC
AGTAGCATCCTTTCAAAAC
Found at i:2097524 original size:54 final size:54
Alignment explanation
Indices: 2097153--2097584 Score: 231
Period size: 57 Copynumber: 7.6 Consensus size: 54
2097143 GCCCACAAGT
* ** * * * *
2097153 CCACAAATCAGTGGCACCTTTTCGAAAGCCCCCAAATTAGTGGCACCCTTTTAAAGC
1 CCACAAGTCAGTGGCACC-TTTC-AAAGCCAACAAGTCAATGG-AACCTTTTAAAGC
* * * * *
2097210 CCACAAGTCAGTGGCATCCTTTCAAAGTCCATA-AA-TCAGTAGCACCTTTTCCAAGT
1 CCACAAGTCAGTGGCA-CCTTTCAAAG-CCA-ACAAGTCAATGGAACCTTTT-AAAGC
* * * * * * * * * * *
2097266 CCACAAATTAGTGGCACATTTTTAAAGCCCATAAGTCAGTAGCATCTTTTCAAAAAC
1 CCACAAGTCAGTGGCAC-CTTTCAAAGCCAACAAGTCAATGGAACCTTTT--AAAGC
* * * * * * *
2097323 CCATAAGTCAGTGGCACATTTTCAAAGCCCACAAGTCATTGGCACCTTTCGAGAGC
1 CCACAAGTCAGTGGCAC-CTTTCAAAGCCAACAAGTCAATGGAACCTTT-TAAAGC
* ** * * * *
2097379 CCACAAGTTAGCAGCTTCCTTTTCAAAGCCTACAAGTCAATGCCATCCTTTTAAAGC
1 CCACAAGTCAGTGGC-ACC-TTTCAAAGCCAACAAGTCAATG-GAACCTTTTAAAGC
** * * * *
2097436 CCACAAGTCAGTGGCACCTTTCAAAGCCCTCAAGTTAGTGGAACCTTTCAAAAC
1 CCACAAGTCAGTGGCACCTTTCAAAGCCAACAAGTCAATGGAACCTTTTAAAGC
* *
2097490 CCACAAGTTAGTGGCA-CTTTCAAAAGCCAACAAGTCAATGGCACCTTTTTAAAGC
1 CCACAAGTCAGTGGCACCTTTC-AAAGCCAACAAGTCAATGGAACC-TTTTAAAGC
*
2097545 CCACAAGTCAGTAGCAACCCTTTTCAAAGCTCACACAAGT
1 CCACAAGTCAGTGGC-A-CC-TTTCAAAGC-CA-ACAAGT
2097585 TGGTTGTACC
Statistics
Matches: 290, Mismatches: 65, Indels: 37
0.74 0.17 0.09
Matches are distributed among these distances:
53 5 0.02
54 44 0.15
55 49 0.17
56 64 0.22
57 103 0.36
58 13 0.04
59 6 0.02
60 6 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (54 bp):
CCACAAGTCAGTGGCACCTTTCAAAGCCAACAAGTCAATGGAACCTTTTAAAGC
Found at i:2098990 original size:11 final size:11
Alignment explanation
Indices: 2098971--2099007 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
2098961 TTAACTAAAA
*
2098971 AAAAAAGAAAG
1 AAAAGAGAAAG
2098982 AAAAGAGAAAG
1 AAAAGAGAAAG
2098993 AAAAGAGAGAAG
1 AAAAGAGA-AAG
2099005 AAA
1 AAA
2099008 TAGAAACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 18 0.75
12 6 0.25
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AAAAGAGAAAG
Found at i:2100875 original size:97 final size:96
Alignment explanation
Indices: 2100716--2100958 Score: 333
Period size: 97 Copynumber: 2.5 Consensus size: 96
2100706 TTATTTATCA
* *
2100716 GGGATACTCCAACCCTATTTCTCCGAGGGGATACTCCAATCCCGCTTTTAAATACATCAAAGTTT
1 GGGACACTCCAACCCTATTCCTCCGAGGGGATACTCCAA-CCCGCTTTTAAATACATCAAAGTTT
2100781 AAATCTTATTCTCACTTAAATTGTCAACATCG
65 AAATCTTATTCTCACTTAAATTGTCAACATCG
* * * * *
2100813 GGGACACTTCAACCTTATTCCTCCGAGGGGATACTCCAACCTTGCTTTTAAATGCATTAAAGTTT
1 GGGACACTCCAACCCTATTCCTCCGAGGGGATACTCCAACC-CGCTTTTAAATACATCAAAGTTT
* * *
2100878 AAATTTTATTCTCACTTAAATTGTTATCATCG
65 AAATCTTATTCTCACTTAAATTGTCAACATCG
* * * *
2100910 GGGACACTCCAACCCCATTCCTCCGAGAGGAAACTCCAACTCCGTTTTT
1 GGGACACTCCAACCCTATTCCTCCGAGGGGATACTCCAAC-CCGCTTTT
2100959 CAATCAAAAA
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
96 2 0.02
97 124 0.98
98 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (96 bp):
GGGACACTCCAACCCTATTCCTCCGAGGGGATACTCCAACCCGCTTTTAAATACATCAAAGTTTA
AATCTTATTCTCACTTAAATTGTCAACATCG
Found at i:2102582 original size:7 final size:7
Alignment explanation
Indices: 2102549--2102581 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
2102539 CCCAAATCCA
2102549 AAAAAAG
1 AAAAAAG
2102556 AAAAAAG
1 AAAAAAG
*
2102563 AAAACAG
1 AAAAAAG
2102570 AAAAAA-
1 AAAAAAG
2102576 AAAAAA
1 AAAAAA
2102582 ACCCTACGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:2110416 original size:22 final size:22
Alignment explanation
Indices: 2110390--2110457 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
2110380 GTCTTTGAAT
2110390 AAAATAATATGTACATATAGTA
1 AAAATAATATGTACATATAGTA
* *
2110412 AAAATAATATGTACGTATAGCA
1 AAAATAATATGTACATATAGTA
* * * *
2110434 TAACT-ATTTGCACATATAGTA
1 AAAATAATATGTACATATAGTA
2110455 AAA
1 AAA
2110458 CCGATGTATA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 14 0.38
22 23 0.62
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.31
Consensus pattern (22 bp):
AAAATAATATGTACATATAGTA
Found at i:2111944 original size:7 final size:7
Alignment explanation
Indices: 2111934--2111964 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
2111924 CCCAAATCCA
2111934 AAAAAAG
1 AAAAAAG
2111941 AAAAAAG
1 AAAAAAG
2111948 AAAAAAG
1 AAAAAAG
2111955 AAAAAA-
1 AAAAAAG
2111961 AAAA
1 AAAA
2111965 CCCTACGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:2115826 original size:21 final size:21
Alignment explanation
Indices: 2115801--2115856 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
2115791 TTTTTTCCTA
2115801 CATGTATCGATACATGCCATT
1 CATGTATCGATACATGCCATT
2115822 CATGTATCGATACATGCCATT
1 CATGTATCGATACATGCCATT
2115843 CATGTATCGATACA
1 CATGTATCGATACA
2115857 AGGTTCTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (21 bp):
CATGTATCGATACATGCCATT
Found at i:2115936 original size:20 final size:20
Alignment explanation
Indices: 2115907--2115945 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2115897 ATTAATATAA
* *
2115907 TAAGTTAATGTATTGATACG
1 TAAGTGAATGTATCGATACG
2115927 TAAGTGAATGTATCGATAC
1 TAAGTGAATGTATCGATAC
2115946 ATGCTTGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (20 bp):
TAAGTGAATGTATCGATACG
Found at i:2116031 original size:20 final size:20
Alignment explanation
Indices: 2116006--2116058 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
2115996 CTGAAAAAAT
2116006 TGTATCGATACATAAGTAAA
1 TGTATCGATACATAAGTAAA
2116026 TGTATCGATACATAAGTAAA
1 TGTATCGATACATAAGTAAA
*
2116046 TGTATCCATACAT
1 TGTATCGATACAT
2116059 GCTTGCAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATAAGTAAA
Found at i:2118359 original size:96 final size:97
Alignment explanation
Indices: 2118182--2118369 Score: 240
Period size: 96 Copynumber: 1.9 Consensus size: 97
2118172 AAAAAAATTA
* *
2118182 AAATTTTATTCATCGAGGATACTCCAACCCTATTATTTCGAGAGAAAACTCCAACCCCGTTTTTA
1 AAATTTTATTCATCGAGGATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCTTA
*
2118247 AACTTGTCAAGGTTTAAAT-CTTATTTTTGCTT
66 AACTTGTCAAGATTTAAATGC-TATTTTTGCTT
* * * **
2118279 AAATTATTA-TCATCG-GAGATACTCCAACCCCATT-TTTTGAGGGAATACTCCAACCTTGTTCT
1 AAATT-TTATTCATCGAG-GATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCT
*
2118341 TAAATTTGTCAAGATTTAAATGCTATTTT
64 TAAACTTGTCAAGATTTAAATGCTATTTT
2118370 CACCCAAATT
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
96 48 0.61
97 28 0.35
98 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (97 bp):
AAATTTTATTCATCGAGGATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCTTA
AACTTGTCAAGATTTAAATGCTATTTTTGCTT
Found at i:2118379 original size:96 final size:96
Alignment explanation
Indices: 2118182--2118408 Score: 226
Period size: 96 Copynumber: 2.3 Consensus size: 96
2118172 AAAAAAATTA
* *
2118182 AAATTTTATTCATC-GAGGATACTCCAACCCTATTATTTCGAGAGAAAACTCCAACCCCGTTTTT
1 AAATTTTA-TCATCGGA-GATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCTT
* ** **
2118246 AAACTTGTCAAGGTTTAAATCTTATTTTTGCTT
64 AAACTTGTCAAGATTTAAATCTTATTTTCACCC
* * * **
2118279 AAATTATTATCATCGGAGATACTCCAACCCCATT-TTTTGAGGGAATACTCCAACCTTGTTCTTA
1 AAATT-TTATCATCGGAGATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCTTA
*
2118343 AATTTGTCAAGATTTAAATGC-TATTTTCACCC
65 AACTTGTCAAGATTTAAAT-CTTATTTTCACCC
* * * * *
2118375 AAATTGTTATTATCGGGGACATTCCAATCCCATT
1 AAATT-TTATCATCGGAGATACTCCAACCCCATT
2118409 CCTCCGATGG
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
96 76 0.70
97 27 0.25
98 5 0.05
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (96 bp):
AAATTTTATCATCGGAGATACTCCAACCCCATTATTTCGAGAGAAAACTCCAACCCCGTTCTTAA
ACTTGTCAAGATTTAAATCTTATTTTCACCC
Found at i:2119027 original size:21 final size:21
Alignment explanation
Indices: 2119003--2119043 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2118993 GTATGTAAAA
2119003 ATACGTATT-GTATCAATACAT
1 ATAC-TATTGGTATCAATACAT
2119024 ATACTATTGGTATCAATACA
1 ATACTATTGGTATCAATACA
2119044 CAAGGTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (21 bp):
ATACTATTGGTATCAATACAT
Found at i:2119108 original size:20 final size:19
Alignment explanation
Indices: 2119083--2119152 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
2119073 ATCCTGAAAA
2119083 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
2119103 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
*
2119122 AGTATCGATACACA-CAATAT
1 -GTATCGATACACATTAA-AT
2119142 GTATCGATACA
1 GTATCGATACA
2119153 GGACGTTGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:2119203 original size:53 final size:53
Alignment explanation
Indices: 2119123--2119258 Score: 209
Period size: 53 Copynumber: 2.6 Consensus size: 53
2119113 AGATTGCATA
*
2119123 GTATCGATACACACAATATGTATCGATACAGGACGTTGGTAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACGTTGGCAGTAGCCAAATTT
*** * * *
2119176 GTATCGATACACATTGTGTGTATCGATACAGGTCTTTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACGTTGGCAGTAGCCAAATTT
2119229 GTATCGATACACACAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
2119259 TTGGCAGTAG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 72 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACGTTGGCAGTAGCCAAATTT
Found at i:2119301 original size:10 final size:10
Alignment explanation
Indices: 2119282--2119312 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2119272 AATCTCATTT
*
2119282 TCACTGTTCA
1 TCACTATTCA
2119292 TCACTATTCA
1 TCACTATTCA
2119302 TCACTATTCA
1 TCACTATTCA
2119312 T
1 T
2119313 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (10 bp):
TCACTATTCA
Found at i:2119334 original size:21 final size:22
Alignment explanation
Indices: 2119300--2119355 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
2119290 CATCACTATT
2119300 CATCACTATTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
2119322 CATCACT-TTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
*
2119343 CATCACTGTTCAT
1 CATCACTATTCAT
2119356 AGGTCACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (22 bp):
CATCACTATTCATGTATCGATA
Found at i:2119444 original size:13 final size:13
Alignment explanation
Indices: 2119426--2119464 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2119416 TCACTATTCA
2119426 TGTATCGATACAT
1 TGTATCGATACAT
*
2119439 TGTATCGATACAG
1 TGTATCGATACAT
2119452 TGTATCGATACAT
1 TGTATCGATACAT
2119465 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2124085 original size:30 final size:30
Alignment explanation
Indices: 2124014--2124074 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
2124004 TTTAAGGGTG
2124014 ACAACGTATTAAGGGGGAGAGTTTGTATAA
1 ACAACGTATTAAGGGGGAGAGTTTGTATAA
2124044 ACAACGTATTAAGGGGGAGAGTTTGTATAA
1 ACAACGTATTAAGGGGGAGAGTTTGTATAA
2124074 A
1 A
2124075 TTTTGTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.30, T:0.26
Consensus pattern (30 bp):
ACAACGTATTAAGGGGGAGAGTTTGTATAA
Found at i:2124971 original size:20 final size:19
Alignment explanation
Indices: 2124946--2125015 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
2124936 ACCCTGAAAA
2124946 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
2124966 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
*
2124985 AGTATCGATACACA-CAATAT
1 -GTATCGATACACATTAA-AT
2125005 GTATCGATACA
1 GTATCGATACA
2125016 AGACGTTGGC
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
19 15 0.37
20 26 0.63
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:2125066 original size:53 final size:53
Alignment explanation
Indices: 2124986--2125121 Score: 209
Period size: 53 Copynumber: 2.6 Consensus size: 53
2124976 AGATTGCATA
2124986 GTATCGATACACACAATATGTATCGATACAAGACGTTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAAGACGTTGGCAGTAGCCAAATTT
*** * * * *
2125039 GTATCGATACACATTGTGTGTATCGATACAGGTCTTTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAAGACGTTGGCAGTAGCCAAATTT
2125092 GTATCGATACACACAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
2125122 TTGGCAGTAG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 72 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAAGACGTTGGCAGTAGCCAAATTT
Found at i:2125164 original size:10 final size:10
Alignment explanation
Indices: 2125145--2125175 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2125135 AATCTCATTT
*
2125145 TCACTGTTCA
1 TCACTATTCA
2125155 TCACTATTCA
1 TCACTATTCA
2125165 TCACTATTCA
1 TCACTATTCA
2125175 T
1 T
2125176 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (10 bp):
TCACTATTCA
Found at i:2125197 original size:21 final size:22
Alignment explanation
Indices: 2125163--2125218 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
2125153 CATCACTATT
2125163 CATCACTATTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
2125185 CATCACT-TTCATGTATCGATA
1 CATCACTATTCATGTATCGATA
*
2125206 CATCACTGTTCAT
1 CATCACTATTCAT
2125219 AGGTCACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (22 bp):
CATCACTATTCATGTATCGATA
Found at i:2125307 original size:13 final size:13
Alignment explanation
Indices: 2125289--2125327 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2125279 TCACTATTCA
2125289 TGTATCGATACAT
1 TGTATCGATACAT
*
2125302 TGTATCGATACAG
1 TGTATCGATACAT
2125315 TGTATCGATACAT
1 TGTATCGATACAT
2125328 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2126918 original size:13 final size:13
Alignment explanation
Indices: 2126900--2126925 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2126890 AATTTTTTGG
2126900 TGTATCGATACAT
1 TGTATCGATACAT
2126913 TGTATCGATACAT
1 TGTATCGATACAT
2126926 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2127878 original size:26 final size:27
Alignment explanation
Indices: 2127848--2127899 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
2127838 AACTAGTAAT
2127848 GTTTTGATCGATCA-TTAGTT-TAATCA
1 GTTTTGATC-ATCATTTAGTTATAATCA
*
2127874 GTTTTGATCATTATTTAGTTATAATC
1 GTTTTGATCATCATTTAGTTATAATC
2127900 CCTTTTCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 3 0.13
26 15 0.65
27 5 0.22
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (27 bp):
GTTTTGATCATCATTTAGTTATAATCA
Found at i:2128969 original size:19 final size:20
Alignment explanation
Indices: 2128926--2128971 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
2128916 CTATCAGTTT
2128926 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAG
*
2128946 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
2128965 CATGTAT
1 CATGTAT
2128972 ATAATGTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:2129600 original size:16 final size:16
Alignment explanation
Indices: 2129579--2129609 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
2129569 TTTTATTAAG
2129579 AGATTTCAAAAGTAAA
1 AGATTTCAAAAGTAAA
2129595 AGATTTCAAAAGTAA
1 AGATTTCAAAAGTAA
2129610 GTATTCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (16 bp):
AGATTTCAAAAGTAAA
Found at i:2137704 original size:20 final size:20
Alignment explanation
Indices: 2137679--2137734 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
2137669 GGGCATAATA
*
2137679 TATCGATACAATTCATCATG
1 TATCGATACAATTCACCATG
*
2137699 TATCGATATAATGTC-CCATG
1 TATCGATACAAT-TCACCATG
*
2137719 TATCGATACATTTCAC
1 TATCGATACAATTCAC
2137735 TTAGGATAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
TATCGATACAATTCACCATG
Found at i:2137807 original size:19 final size:19
Alignment explanation
Indices: 2137757--2137812 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
2137747 CTGCAAGCTT
2137757 CATGTATCGATACAATTGAG
1 CATGTATCGATACAA-TGAG
* *
2137777 TATGTATAGATACAATGAG
1 CATGTATCGATACAATGAG
* *
2137796 CATTTATCGATATAATG
1 CATGTATCGATACAATG
2137813 TATCAATACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:2138730 original size:32 final size:32
Alignment explanation
Indices: 2138689--2138754 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
2138679 ACGTACAGTA
* *
2138689 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGACACATAAGTTTTGTATCAATAC
*
2138721 AATGTATCGACATATAAGTTTTGTATCAATAC
1 AATGTATCGACACATAAGTTTTGTATCAATAC
2138753 AA
1 AA
2138755 AACTACCTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (32 bp):
AATGTATCGACACATAAGTTTTGTATCAATAC
Found at i:2149406 original size:11 final size:11
Alignment explanation
Indices: 2149379--2149415 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
2149369 CATTCGCAAA
2149379 AAAAAATC-AT
1 AAAAAATCAAT
2149389 AAAAAATCAAT
1 AAAAAATCAAT
2149400 AAAAAAT-AA-
1 AAAAAATCAAT
2149409 AAAAAAT
1 AAAAAAT
2149416 AAAAAGGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 7 0.27
10 10 0.38
11 9 0.35
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAATCAAT
Found at i:2149411 original size:8 final size:9
Alignment explanation
Indices: 2149377--2149420 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
2149367 GTCATTCGCA
2149377 AAAAAAAAT
1 AAAAAAAAT
*
2149386 CATAAAAAAT
1 -AAAAAAAAT
2149396 CAATAAAAAAT
1 -AA-AAAAAAT
2149407 AAAAAAAAT
1 AAAAAAAAT
2149416 AAAAA
1 AAAAA
2149421 GGGTCTGGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 12 0.39
10 12 0.39
11 7 0.23
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.14
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:2151337 original size:79 final size:79
Alignment explanation
Indices: 2151226--2151644 Score: 397
Period size: 79 Copynumber: 5.3 Consensus size: 79
2151216 TATTTTGGAG
* * * * * *
2151226 ATAAAAT-GGGGTCAGAGTA-CTCCCTCAGAAATATCGGGGTTAGAGTATCCTCAATGGTGAAAA
1 ATAAAATCGAGGTTAGAGTATC-CCCTCAGAAATAACAGGGTTAGAGTATCCTCGATTGTGAAAA
* * *
2151289 ATCGATGTTTTGGAA
65 ATTGGTGTTTTAGAA
* * * * *
2151304 ATAAAATCGAGATTTGAGTATCCTCTCAGAAATAACAGGGTTGGAGTATCCTCGATTGT-AGAAT
1 ATAAAATCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAGAGTATCCTCGATTGTGA-AAA
* *
2151368 ATTAGTGTTTTGGAA
65 ATTGGTGTTTTAGAA
* * ** * *
2151383 ATAAAA-CTAAGGTTAGGGTATCCCCTTGGAAATAACGGGGTTGGAGTATCC-CTGATTGTGAAA
1 ATAAAATC-GAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAGAGTATCCTC-GATTGTGAAA
* *
2151446 AATTGGTGTTTCAAAA
64 AATTGGTGTTTTAGAA
* * *
2151462 ATAAAATCGAGGTTAGAGTATCCCCTCAGAAATAACAAGGTTAGAGTATCCCCGATTGTAAAAAA
1 ATAAAATCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAGAGTATCCTCGATTGTGAAAAA
2151527 TTGGTGTTTTAGAA
66 TTGGTGTTTTAGAA
* *
2151541 ATAAAATC-AGGGTTAGAGTATCCCCTCAGAAGTAACCGGGTTAGAGTATCC-CTGATTGT-AGA
1 ATAAAATCGA-GGTTAGAGTATCCCCTCAGAAATAACAGGGTTAGAGTATCCTC-GATTGTGA-A
*** *
2151603 AAATCAATATTTTAGAA
63 AAATTGGTGTTTTAGAA
*
2151620 ATAAAATCGGGGTT-GCAGTATCCCC
1 ATAAAATCGAGGTTAG-AGTATCCCC
2151645 GATGGTGGAA
Statistics
Matches: 283, Mismatches: 45, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
78 14 0.05
79 265 0.94
80 4 0.01
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (79 bp):
ATAAAATCGAGGTTAGAGTATCCCCTCAGAAATAACAGGGTTAGAGTATCCTCGATTGTGAAAAA
TTGGTGTTTTAGAA
Found at i:2151640 original size:158 final size:157
Alignment explanation
Indices: 2151198--2151644 Score: 474
Period size: 158 Copynumber: 2.8 Consensus size: 157
2151188 GAATACATCT
* * * * * * * *
2151198 CCCGA-TGAAAAAAATTAATATTTTGGAGATAAAAT-GGGGTCAGAGTA-CTCCCTCAGAAATAT
1 CCCGATTGTAAAAAATTAGTGTTTTAGAAATAAAATCAGGGTTAGAGTATC-CCCTCAGAAATAA
* * * **
2151260 CGGGGTTAGAGTAT-CCTCAATGGTGAAAAATCGATGTTTTGGAAATAAAATCGAGATTTGAGTA
65 CGGGGTTAGAGTATCCCT-GATTGTGAAAAATCGATGTTTTAGAAATAAAATCG-GGGTTGAGTA
* * *
2151324 TCCTCTCAGAAATAACAGGGTTGGAGTATC
128 TCCCCTCAGAAATAACAAGGTTAGAGTATC
* * * * * * **
2151354 CTCGATTGTAGAATATTAGTGTTTTGGAAATAAAA-CTAAGGTTAGGGTATCCCCTTGGAAATAA
1 CCCGATTGTAAAAAATTAGTGTTTTAGAAATAAAATC-AGGGTTAGAGTATCCCCTCAGAAATAA
* * * * * *
2151418 CGGGGTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTCAAAAATAAAATCGAGGTTAGAGTAT
65 CGGGGTTAGAGTATCCCTGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTT-GAGTAT
2151483 CCCCTCAGAAATAACAAGGTTAGAGTATC
129 CCCCTCAGAAATAACAAGGTTAGAGTATC
* *
2151512 CCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAGAAGTAAC
1 CCCGATTGTAAAAAATTAGTGTTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAGAAATAAC
* * *
2151577 CGGGTTAGAGTATCCCTGATTGT-AGAAAATCAATATTTTAGAAATAAAATCGGGGTTGCAGTAT
66 GGGGTTAGAGTATCCCTGATTGTGA-AAAATCGATGTTTTAGAAATAAAATCGGGGTTG-AGTAT
2151641 CCCC
129 CCCC
2151645 GATGGTGGAA
Statistics
Matches: 235, Mismatches: 47, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 4 0.02
157 27 0.11
158 199 0.85
159 5 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (157 bp):
CCCGATTGTAAAAAATTAGTGTTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAGAAATAAC
GGGGTTAGAGTATCCCTGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGGGTTGAGTATCC
CCTCAGAAATAACAAGGTTAGAGTATC
Found at i:2151656 original size:51 final size:51
Alignment explanation
Indices: 2151585--2151693 Score: 121
Period size: 51 Copynumber: 2.1 Consensus size: 51
2151575 ACCGGGTTAG
* * *
2151585 AGTATCCCTGATTGTAGAAAATCAATATTTTAGAAATAAAA-TCGGGGTTGC
1 AGTATCCCCGATGGTAGAAAATCAATATTTTAGAAATAAAACT-AGGGTTGC
* *** * *
2151636 AGTATCCCCGATGGTGGAAAATTGGTATTTTGGAAATAAAACTAGGGTTGG
1 AGTATCCCCGATGGTAGAAAATCAATATTTTAGAAATAAAACTAGGGTTGC
2151687 AGTATCC
1 AGTATCC
2151694 TTCAGAAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (51 bp):
AGTATCCCCGATGGTAGAAAATCAATATTTTAGAAATAAAACTAGGGTTGC
Found at i:2151718 original size:78 final size:78
Alignment explanation
Indices: 2151627--2151771 Score: 184
Period size: 78 Copynumber: 1.9 Consensus size: 78
2151617 GAAATAAAAT
* *** * *
2151627 CGGGGTTGCAGTATCCCCGATGGTGGAAAATTGGTATTTTGGAAATAAAA-CTAGGGTTGGAGTA
1 CGGGGTTGCAGTATCCCCGATGATGGAAAATCAATATTTTGGAAATAAAATC-AGAGTTGCAGTA
2151691 TCCTTCAGAAATAA
65 TCCTTCAGAAATAA
* * * *
2151705 CGGGGTTGGAGTATCCCTGTTTATGGAAAATCAATATTTTGGAAATAAAATCAGAGTTGCAGTAT
1 CGGGGTTGCAGTATCCCCGATGATGGAAAATCAATATTTTGGAAATAAAATCAGAGTTGCAGTAT
2151770 CC
66 CC
2151772 CCGATGGTGA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 55 0.98
79 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (78 bp):
CGGGGTTGCAGTATCCCCGATGATGGAAAATCAATATTTTGGAAATAAAATCAGAGTTGCAGTAT
CCTTCAGAAATAA
Found at i:2151752 original size:129 final size:129
Alignment explanation
Indices: 2151506--2151902 Score: 476
Period size: 129 Copynumber: 3.1 Consensus size: 129
2151496 ACAAGGTTAG
* * * *
2151506 AGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAATCAGGGTTAGAGTATCCCCTCAGA
1 AGTATCCCCGATGGTGAAAAATTGGTGTTTTGGAAATAAAAT-AGGGTTGGAGTATCCCCTCAGA
* * * *
2151571 AGTAACCGGGTTAGAGTATCCCTGATTGTAGAAAATCAATATTTTAGAAATAAAATCGGGGTTGC
65 AATAACAGGGTTGGAGTATCCCTGATTGTGGAAAATCAATATTTTAGAAATAAAATCGGGGTTGC
* * *
2151636 AGTATCCCCGATGGTGGAAAATTGGTATTTTGGAAATAAAACTAGGGTTGGAGTAT-CCTTCAGA
1 AGTATCCCCGATGGTGAAAAATTGGTGTTTTGGAAATAAAA-TAGGGTTGGAGTATCCCCTCAGA
* * * * * *
2151700 AATAACGGGGTTGGAGTATCCCTGTTTATGGAAAATCAATATTTTGGAAATAAAATCAGAGTTGC
65 AATAACAGGGTTGGAGTATCCCTGATTGTGGAAAATCAATATTTTAGAAATAAAATCGGGGTTGC
* * *
2151765 AGTATCCCCGATGGTGAAAAATTTGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTC-GA
1 AGTATCCCCGATGGTGAAAAATTGGTGTTTTGGAAATAAAATAG-GGTTGGAGTATCCCCTCAG-
* * * * ** *
2151829 AAATAATATGGTTGAAGTATCTCC-GATTGTGAAAAATCGGTATTTTAGAAATAAAATAGGGGTT
64 AAATAACAGGGTTGGAGTATC-CCTGATTGTGGAAAATCAATATTTTAGAAATAAAATCGGGGTT
*
2151893 GG
128 GC
2151895 AGTATCCC
1 AGTATCCC
2151903 TTCAGAAATA
Statistics
Matches: 226, Mismatches: 36, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
128 2 0.01
129 112 0.50
130 109 0.48
131 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (129 bp):
AGTATCCCCGATGGTGAAAAATTGGTGTTTTGGAAATAAAATAGGGTTGGAGTATCCCCTCAGAA
ATAACAGGGTTGGAGTATCCCTGATTGTGGAAAATCAATATTTTAGAAATAAAATCGGGGTTGC
Found at i:2151896 original size:79 final size:78
Alignment explanation
Indices: 2151760--2152062 Score: 281
Period size: 79 Copynumber: 3.8 Consensus size: 78
2151750 TAAAATCAGA
* * **
2151760 GTTGCAGTATCCCCGATGGTGAAAAATTTGTGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCC
1 GTTGAAGTATCCCCGATTGTGAAAAATCGGTGTTTTG-AAATAAAATCGAGGTTGGAGTATCCCC
*
2151825 TCGAAAATAATATG
65 TCGAAAATAATAGG
* * * * *
2151839 GTTGAAGTATCTCCGATTGTGAAAAATCGGTATTTTAGAAATAAAATAGGGGTTGGAGTATCCCT
1 GTTGAAGTATCCCCGATTGTGAAAAATCGGTGTTTT-GAAATAAAATCGAGGTTGGAGTATCCCC
*
2151904 TC-AGAAATAATGGG
65 TCGA-AAATAATAGG
* * * * * *
2151918 GTTGGAGTATCCCCAATTGTAAAAAATCGATGTTTTGGAAATAAAACCGAGCTTGGAGTATCCCC
1 GTTGAAGTATCCCCGATTGTGAAAAATCGGTGTTTT-GAAATAAAATCGAGGTTGGAGTATCCCC
*
2151983 TCGAAAATAA-CGG
65 TCGAAAATAATAGG
* ** * * * *
2151996 AATT-AGAGTATCCCTAATTGTGGAAAATCAGTGTTTTGGAAACAAAA-CTGGGGTTGGAGTATC
1 -GTTGA-AGTATCCCCGATTGTGAAAAATCGGTGTTTT-GAAATAAAATC-GAGGTTGGAGTATC
2152059 CCCT
62 CCCT
2152063 TAGAAATAAC
Statistics
Matches: 184, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
78 4 0.02
79 178 0.97
80 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29
Consensus pattern (78 bp):
GTTGAAGTATCCCCGATTGTGAAAAATCGGTGTTTTGAAATAAAATCGAGGTTGGAGTATCCCCT
CGAAAATAATAGG
Found at i:2151981 original size:158 final size:157
Alignment explanation
Indices: 2151790--2152089 Score: 394
Period size: 158 Copynumber: 1.9 Consensus size: 157
2151780 GAAAAATTTG
* * *
2151790 TGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTCGAAAATAATATGG-TT-GAAGTATCTCC
1 TGTTTTGAAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAAT-A-ACGGATTAG-AGTATC-CC
* * * *
2151853 -GATTGTGAAAAATCGGTATTTTAGAAATAAAA-TAGGGGTTGGAGTAT-CCCTTCAGAAATAAT
62 TAATTGTGAAAAATCAGTATTTTAGAAACAAAACT-GGGGTTGGAGTATCCCCTT-AGAAATAAC
*
2151915 GGGGTTGGAGTATCCCCAATTGTAAAAAATCGA
125 GGGGTTGGAGTACCCCCAATTGTAAAAAATCGA
*
2151948 TGTTTTGGAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCTAA
1 TGTTTTGAAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGG-ATTAGAGTATCCCTAA
* * *
2152013 TTGTGGAAAATCAGTGTTTTGGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAACGGGGT
65 TTGTGAAAAATCAGTATTTTAGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAACGGGGT
2152078 TGGAGTACCCCC
130 TGGAGTACCCCC
2152090 TCAAAAATAA
Statistics
Matches: 124, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
156 3 0.02
157 3 0.02
158 111 0.90
159 7 0.06
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (157 bp):
TGTTTTGAAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGATTAGAGTATCCCTAAT
TGTGAAAAATCAGTATTTTAGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAACGGGGTT
GGAGTACCCCCAATTGTAAAAAATCGA
Found at i:2152084 original size:107 final size:106
Alignment explanation
Indices: 2151970--2152193 Score: 272
Period size: 107 Copynumber: 2.1 Consensus size: 106
2151960 AAAACCGAGC
* * *
2151970 TTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCTAATTGTGGAA-AATCAGTGTTTTG
1 TTGGAGTATCCCCTCAAAAATAACGGAATTAGAGTATCCCTAATTAT-GAAGAATCAATGTTTTG
*
2152034 GAAACAAAACTGGGGTTGGAGTATCCCCTTAG-AAATAACGGGG
65 GAAACAAAAC-GGGGTTGGAGTATCCCC-TAGAAAATAACGGGA
* * ** * * *
2152077 TTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCTTGATTATGAAGAATCAATGTTTTGG
1 TTGGAGTATCCCCTCAAAAATAACGGAATTAGAGTATCCCTAATTATGAAGAATCAATGTTTTGG
* * * *
2152142 AAACAAATCGTGGTTGGAGTATCCTCTCGAAAATAACGGGA
66 AAACAAAACGGGGTTGGAGTATCCCCTAGAAAATAACGGGA
2152183 TTGGAGTATCC
1 TTGGAGTATCC
2152194 TCCATTGTGG
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
105 2 0.02
106 38 0.38
107 59 0.60
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (106 bp):
TTGGAGTATCCCCTCAAAAATAACGGAATTAGAGTATCCCTAATTATGAAGAATCAATGTTTTGG
AAACAAAACGGGGTTGGAGTATCCCCTAGAAAATAACGGGA
Found at i:2152089 original size:28 final size:28
Alignment explanation
Indices: 2152045--2152112 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
2152035 AAACAAAACT
* * *
2152045 GGGGTTGGAGTATCCCCTTAGAAATAAC
1 GGGGTTGGAGTACCCCCTCAAAAATAAC
*
2152073 GGGGTTGGAGTACCCCCTCAAAAATAAT
1 GGGGTTGGAGTACCCCCTCAAAAATAAC
2152101 GGGGTTGGAGTA
1 GGGGTTGGAGTA
2152113 TCCTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (28 bp):
GGGGTTGGAGTACCCCCTCAAAAATAAC
Found at i:2152209 original size:185 final size:185
Alignment explanation
Indices: 2151887--2152226 Score: 477
Period size: 186 Copynumber: 1.8 Consensus size: 185
2151877 AAATAAAATA
* * * * *
2151887 GGGGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGAGTATCCCCAATTGTAAAAAATCGATGTT
1 GGGGTTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATAAAAAATCAATGTT
2151952 TTGGAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCTAATTGT
66 TTGGAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCTAATTGT
*
2152017 GGAAAATCAGTGTTTTGGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAAC
131 GGAAAATCAGT-TTTTAGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAAC
*** * *
2152073 GGGGTTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCTTGATTATGAAGAATCAATGTT
1 GGGGTTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATAAAAAATCAATGTT
* * * * * * * *
2152138 TTGGAAA-CAAATCGTGGTTGGAGTATCCTCTCGAAAATAACGGGATTGGAGTAT-CCTCCATTG
66 TTGGAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCT-AATTG
2152201 TGGAAAATCAGTTTTTAGAAACAAAA
130 TGGAAAATCAGTTTTTAGAAACAAAA
2152227 ACATGAATGA
Statistics
Matches: 134, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
184 16 0.12
185 56 0.42
186 62 0.46
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (185 bp):
GGGGTTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCCCAATTATAAAAAATCAATGTT
TTGGAAATAAAACCGAGCTTGGAGTATCCCCTCGAAAATAACGGAATTAGAGTATCCCTAATTGT
GGAAAATCAGTTTTTAGAAACAAAACTGGGGTTGGAGTATCCCCTTAGAAATAAC
Found at i:2152210 original size:78 final size:77
Alignment explanation
Indices: 2152075--2152225 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 77
2152065 GAAATAACGG
* * **
2152075 GGTTGGAGTACCCCCTCAAAAATAATGGGGTTGGAGTATCCTTGATTATGAAGAATCAATGTTTT
1 GGTTGGAGTACCCCCTCAAAAATAACGGGATTGGAGTATCCTCCATTATGAAGAATCAAT-TTTT
*
2152140 GGAAACAAATCGT
65 AGAAACAAATCGT
* * * * *
2152153 GGTTGGAGTATCCTCTCGAAAATAACGGGATTGGAGTATCCTCCATTGTGGAA-AATCAGTTTTT
1 GGTTGGAGTACCCCCTCAAAAATAACGGGATTGGAGTATCCTCCATTAT-GAAGAATCAATTTTT
2152217 AGAAACAAA
65 AGAAACAAA
2152226 AACATGAATG
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
77 12 0.19
78 47 0.76
79 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (77 bp):
GGTTGGAGTACCCCCTCAAAAATAACGGGATTGGAGTATCCTCCATTATGAAGAATCAATTTTTA
GAAACAAATCGT
Found at i:2154098 original size:20 final size:20
Alignment explanation
Indices: 2154045--2154098 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
2154035 ATGTATTGAT
***
2154045 ACAATGTATCGAGGCAATGA
1 ACAATGTATCGATATAATGA
*
2154065 ACAATGTATTGATATAATGA
1 ACAATGTATCGATATAATGA
*
2154085 ATAATGTATCGATA
1 ACAATGTATCGATA
2154099 CATCTGGGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (20 bp):
ACAATGTATCGATATAATGA
Found at i:2154961 original size:29 final size:29
Alignment explanation
Indices: 2154887--2154961 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 29
2154877 AAACTTTCCA
* *
2154887 ACCC-TTTCAAAGCCTATAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTTAGTGGC
**
2154915 A-CCTTTTCAAAGTTCACAAGTTAGTGGC
1 ACCCTTTTCAAAGCCCACAAGTTAGTGGC
*
2154943 ACCCTTTTTAAAGCCCACA
1 ACCCTTTTCAAAGCCCACA
2154962 TGAGCTGATG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 2 0.05
28 22 0.58
29 14 0.37
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
ACCCTTTTCAAAGCCCACAAGTTAGTGGC
Found at i:2155622 original size:52 final size:52
Alignment explanation
Indices: 2155566--2155865 Score: 276
Period size: 52 Copynumber: 5.8 Consensus size: 52
2155556 ATGTCACTAC
* *
2155566 CCTTGAATCAGCACATTGGTGCCCTTATCATCTTTAAGCCCAATGTCGTTGG
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
* * **
2155618 CCTTGAATCAGTACATTAGTACCCTTATCATCTTTAAGTCCAATGTCACTGG
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
* * * *
2155670 CCTTGAATCAGCACATTGGCACTCTTATAATCTTTAAGTCCAATATCGTTGG
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
* * * * * *** * ** *
2155722 CCTTAAATCAGCACTTTGGTACTCTTGTCATCTATAAGAGTAATATCACTGA
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
* * * * * * *
2155774 CCTTGAATCAGCATATTAGCAACTTTATCATCTTTAAATCCTATGTCGTTGG
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
* ** * ** *
2155826 CCTTGAATTAGCATGTTGGCACTTTTATCATCGTTAAGTC
1 CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTC
2155866 AAGTGTCATA
Statistics
Matches: 196, Mismatches: 52, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
52 196 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (52 bp):
CCTTGAATCAGCACATTGGTACCCTTATCATCTTTAAGTCCAATGTCGTTGG
Found at i:2155697 original size:104 final size:104
Alignment explanation
Indices: 2155553--2155838 Score: 333
Period size: 104 Copynumber: 2.8 Consensus size: 104
2155543 TTTCTCAAGG
** * *
2155553 CCAATGTCACT-ACCCTTGAATCAGCACATTGGTGCCCTTATCATCTTTAAGCCCAATGTCGTTG
1 CCAATGTCACTGA-CCTTGAATCAGCACATTGGCACTCTTATCATCTTTAAGTCCAATGTCGTTG
* * *
2155617 GCCTTGAATCAGTACATTAGTACCCTTATCATCTTTAAGT
65 GCCTTGAATCAGCACATTAGTACCCTTATCATCTATAAGA
* * *
2155657 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACTCTTATAATCTTTAAGTCCAATATCGTTGG
1 CCAATGTCACTGACCTTGAATCAGCACATTGGCACTCTTATCATCTTTAAGTCCAATGTCGTTGG
* * * * *
2155722 CCTTAAATCAGCACTTTGGTACTCTTGTCATCTATAAGA
66 CCTTGAATCAGCACATTAGTACCCTTATCATCTATAAGA
** * * * * *
2155761 GTAATATCACTGACCTTGAATCAGCATATTAGCAACT-TTATCATCTTTAAATCCTATGTCGTTG
1 CCAATGTCACTGACCTTGAATCAGCACATTGGC-ACTCTTATCATCTTTAAGTCCAATGTCGTTG
*
2155825 GCCTTGAATTAGCA
65 GCCTTGAATCAGCA
2155839 TGTTGGCACT
Statistics
Matches: 153, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
104 150 0.98
105 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (104 bp):
CCAATGTCACTGACCTTGAATCAGCACATTGGCACTCTTATCATCTTTAAGTCCAATGTCGTTGG
CCTTGAATCAGCACATTAGTACCCTTATCATCTATAAGA
Found at i:2156769 original size:21 final size:20
Alignment explanation
Indices: 2156745--2156798 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
2156735 TTTTACAATT
*
2156745 TGTATCAATACTATAAGTTAA
1 TGTATCAATAC-ATAAGTGAA
* *
2156766 TGTATCGATACATGAGTGAA
1 TGTATCAATACATAAGTGAA
*
2156786 TGCATCAATACAT
1 TGTATCAATACAT
2156799 GCTTGAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
TGTATCAATACATAAGTGAA
Found at i:2161851 original size:21 final size:23
Alignment explanation
Indices: 2161822--2161866 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
2161812 GAATAGACAC
2161822 AAATCAAGC-TATA-ACATGTTT
1 AAATCAAGCTTATAGACATGTTT
* *
2161843 AAATGAAGCTTATAGATATGTTT
1 AAATCAAGCTTATAGACATGTTT
2161866 A
1 A
2161867 GGGTTGTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (23 bp):
AAATCAAGCTTATAGACATGTTT
Found at i:2166097 original size:20 final size:20
Alignment explanation
Indices: 2166072--2166197 Score: 81
Period size: 20 Copynumber: 5.8 Consensus size: 20
2166062 TTTTAAGTAG
2166072 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
2166092 ATGTATCGATACATCTAGGTAAAAAGATAAA
1 ATGTATCGATACAT-T--G-----A-A-A-A
* *
2166123 ATGTATCGGTACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * * *
2166143 ATGTATCGATACAATCATAC
1 ATGTATCGATACATTGAAAA
*
2166163 ATGTATCGATACATTAAAAA
1 ATGTATCGATACATTGAAAA
*
2166183 ATTTATCGATACATT
1 ATGTATCGATACATT
2166198 TGGGTGAAAG
Statistics
Matches: 82, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
20 59 0.72
21 1 0.01
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 14 0.17
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:2166183 original size:91 final size:89
Alignment explanation
Indices: 2166072--2166244 Score: 256
Period size: 91 Copynumber: 1.9 Consensus size: 89
2166062 TTTTAAGTAG
* * *
2166072 ATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAGATAAAATGTATCGGTACAT
1 ATGTATCGATACATTAAAAAATGTATCGATACATCTAGGT-AAAAGACAAAATGTATCGATA-AT
*
2166137 TGAAGAATGTATCGATACAATCATAC
64 TGAAAAATGTATCGATACAATCATAC
* * * *
2166163 ATGTATCGATACATTAAAAAATTTATCGATACATTTGGGTGAAAGACAAAATGTATCGATAATTG
1 ATGTATCGATACATTAAAAAATGTATCGATACATCTAGGTAAAAGACAAAATGTATCGATAATTG
2166228 AAAAATGTATCGATACA
66 AAAAATGTATCGATACA
2166245 TCTGGGTAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
89 20 0.27
90 18 0.24
91 36 0.49
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.29
Consensus pattern (89 bp):
ATGTATCGATACATTAAAAAATGTATCGATACATCTAGGTAAAAGACAAAATGTATCGATAATTG
AAAAATGTATCGATACAATCATAC
Found at i:2167525 original size:26 final size:27
Alignment explanation
Indices: 2167489--2167541 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
2167479 ACTACTCCCA
2167489 ACTATTAAATAAC-TAAAAAAAGCTCT
1 ACTATTAAATAACTTAAAAAAAGCTCT
*
2167515 ACTATTAAATAACTTAAAATAAGCTCT
1 ACTATTAAATAACTTAAAAAAAGCTCT
2167542 CTGGATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (27 bp):
ACTATTAAATAACTTAAAAAAAGCTCT
Found at i:2168717 original size:33 final size:33
Alignment explanation
Indices: 2168680--2168748 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
2168670 CCGTTACAAG
* *
2168680 CAATGTATCGATACAATT-TATCATGTATCGATA
1 CAATGAATCGATAC-ATTGTACCATGTATCGATA
2168713 CAATGAATCGATACATTGTACCATGTATCGATA
1 CAATGAATCGATACATTGTACCATGTATCGATA
2168746 CAA
1 CAA
2168749 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGAATCGATACATTGTACCATGTATCGATA
Found at i:2168802 original size:20 final size:20
Alignment explanation
Indices: 2168777--2168831 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
2168767 CTGCCAATCT
* **
2168777 CATGTATTGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
2168797 CATGTATCGATATAA-TGAA
1 CATGTATCGATACAATTGAA
2168816 CATGTATCGATACAAT
1 CATGTATCGATACAAT
2168832 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2168835 original size:13 final size:13
Alignment explanation
Indices: 2168817--2168843 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2168807 TATAATGAAC
2168817 ATGTATCGATACA
1 ATGTATCGATACA
2168830 ATGTATCGATACA
1 ATGTATCGATACA
2168843 A
1 A
2168844 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2172589 original size:20 final size:20
Alignment explanation
Indices: 2172564--2172611 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
2172554 TGGAGGTGCT
**
2172564 AAACATGCTGTAAATGCATG
1 AAACATGCTCAAAATGCATG
2172584 AAACATAGCTCAAAATGCATG
1 AAACAT-GCTCAAAATGCATG
*
2172605 AATCATG
1 AAACATG
2172612 GGCTGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (20 bp):
AAACATGCTCAAAATGCATG
Found at i:2173612 original size:13 final size:13
Alignment explanation
Indices: 2173594--2173618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2173584 ACAATACTTA
2173594 TGTATCGATACAT
1 TGTATCGATACAT
2173607 TGTATCGATACA
1 TGTATCGATACA
2173619 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2173618 original size:32 final size:32
Alignment explanation
Indices: 2173575--2173637 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
2173565 TAGCTAATTA
*
2173575 TGTATCAATACAATACTTATGTATCGATACAT
1 TGTATCAATACAACACTTATGTATCGATACAT
*
2173607 TGTATCGATACAACACTTATGTATCGATACA
1 TGTATCAATACAACACTTATGTATCGATACA
2173638 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (32 bp):
TGTATCAATACAACACTTATGTATCGATACAT
Found at i:2173631 original size:19 final size:19
Alignment explanation
Indices: 2173572--2173638 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
2173562 CAGTAGCTAA
* *
2173572 TTATGTATCAATACAATAC
1 TTATGTATCGATACAACAC
2173591 TTATGTATCGAT---ACA-
1 TTATGTATCGATACAACAC
2173606 -T-TGTATCGATACAACAC
1 TTATGTATCGATACAACAC
2173623 TTATGTATCGATACAA
1 TTATGTATCGATACAA
2173639 ATCGTTGAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
13 9 0.22
14 1 0.03
16 5 0.12
18 1 0.03
19 24 0.60
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.36
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:2174489 original size:49 final size:49
Alignment explanation
Indices: 2174323--2174848 Score: 643
Period size: 49 Copynumber: 10.8 Consensus size: 49
2174313 AAAGGATGTT
* * * * * *
2174323 AATATGCTGATTCACGGTCAGCAACAGTTAGACTTGAAGATGAAAAGAATGCC
1 AATATGCTGATTCAAGGCCAGCTACA-TTGGACTTAAAGATG--AAG-GTGCC
* * * * * * *
2174376 AATGTGCTGATTCAAGGCCAACGACATTGG-GTT-ATGATAAAGGCGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * * *
2174423 AATATGCTGAGTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGAC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * * *
2174472 AATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGA-CAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* * * *
2174520 AATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAAGATG-AGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGCC
*
2174569 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* *
2174618 AATATGCTGATTCAAGGCCAGCTATATT-GACTTAAAAGGTG-AGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGCC
* *
2174666 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
* *
2174715 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
*
2174763 AATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
*
2174812 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAA
2174849 AGGGTTGCCA
Statistics
Matches: 410, Mismatches: 54, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
47 29 0.07
48 135 0.33
49 216 0.53
50 4 0.01
51 2 0.00
52 3 0.01
53 21 0.05
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
AATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
Found at i:2174545 original size:97 final size:97
Alignment explanation
Indices: 2174372--2174848 Score: 737
Period size: 97 Copynumber: 4.9 Consensus size: 97
2174362 ATGAAAAGAA
* * * * * * *
2174372 TGCCAATGTGCTGATTCAAGGCCAACGACATTGG-GTT-ATGATAAAGGCGCCAATATGCTGAGT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
2174435 CAAGGCCAGCGATATTGGACTTAAAGATGAAGG
66 CAAGGCCAGCTATATTGGACTTAAAGATG-AGG
* * * *
2174468 TGACAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
2174532 CAAGGCTAGCGATATTGGGCTTAAAAGATGAGG
66 CAAGGCCAGCTATATTGGACTT-AAAGATGAGG
2174565 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
2174630 CAAGGCCAGCTATATT-GACTTAAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTT-AAAGATGAGG
*
2174662 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
2174727 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGATGAGG
2174759 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
2174824 CAAGGCCAGCTATATTGGACTTAAA
66 CAAGGCCAGCTATATTGGACTTAAA
2174849 AGGGTTGCCA
Statistics
Matches: 355, Mismatches: 21, Indels: 9
0.92 0.05 0.02
Matches are distributed among these distances:
96 30 0.08
97 276 0.78
98 49 0.14
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (97 bp):
TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAGATGAGG
Found at i:2174634 original size:146 final size:145
Alignment explanation
Indices: 2174372--2174848 Score: 629
Period size: 146 Copynumber: 3.3 Consensus size: 145
2174362 ATGAAAAGAA
* * * * * * *
2174372 TGCCAATGTGCTGATTCAAGGCCAACGACATTGG-GTT-ATGATAAAGGCGCCAATATGCTGAGT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GAGGTGCCAATATGCTGATT
* * *
2174435 CAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGACAATGTGCTGAGTCAAGGCCAGCTACATT
65 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
2174500 GGTCTTAAAGACAAGG
130 GGACTTAAAGACAAGG
* * * *
2174516 TGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAAAAGATGAGGTGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAGATGAGGTGCCAATATGCTGATT
* * *
2174581 CAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATT
65 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
***
2174646 -GACTTAAAAGGTGAGG
130 GGACTT-AAAGACAAGG
* * *
2174662 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-AGGTGCCAATATGCTGATT
*
2174727 CAAGGCCAGCTATATTGGACTTAAAGGTG-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
65 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
*
2174791 GGACTTAAAGATGAAGG
130 GGACTTAAAGA-CAAGG
* *
2174808 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAA
2174849 AGGGTTGCCA
Statistics
Matches: 290, Mismatches: 36, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
144 30 0.10
145 50 0.17
146 206 0.71
147 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (145 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAGACAAGG
Found at i:2174893 original size:33 final size:32
Alignment explanation
Indices: 2174850--2174932 Score: 123
Period size: 33 Copynumber: 2.6 Consensus size: 32
2174840 GGACTTAAAA
2174850 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAG-G
* *
2174883 TGGTTGCCACCGACTTGTGTGGGCTTTAGAGG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGG
*
2174915 GGGTTG-TACCAACTTGTG
1 GGGTTGCCACCAACTTGTG
2174933 GGTTTAACAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
31 10 0.22
32 6 0.13
33 29 0.64
ACGTcount: A:0.16, C:0.18, G:0.36, T:0.30
Consensus pattern (32 bp):
GGGTTGCCACCAACTTGTGTGGGCTTTAGAGG
Found at i:2175038 original size:33 final size:33
Alignment explanation
Indices: 2174946--2175460 Score: 378
Period size: 34 Copynumber: 16.0 Consensus size: 33
2174936 TTAACAGAAG
*
2174946 AAAGATGCCATGGAGTTGTGGACTTAAAA-G-A
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* *
2174977 AAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGAA
*
2175011 AAAGATGCCACAGAGTTGTGGACTT------AA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
*
2175038 AAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGAA
*
2175072 AAAGATGCCACAGAGTTGTGGACTTAAAAGGAA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
2175105 CAAGATGCCACGGAGGTGTGGGCTTAAACGGAA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
*
2175138 AAAGATGCCATAGG-GTTGTGGACTTAAAAGGAAA
1 AAAGATGCCA-CGGAGTTGTGGACTTAAAAGG-AA
* * *
2175172 AAAGGGTGTCACGGAGTCGTGGACTTAAAAGG--
1 AAA-GATGCCACGGAGTTGTGGACTTAAAAGGAA
* *
2175204 ---G-TGCCACGGAGTTGTGGGCTT-TAA--AA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
*
2175230 AGAG-TGCCACGGAGTTGTGGACTTTGAAAA-GAA
1 AAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGAA
* * * **
2175263 AAAGTTGCCACAGAGTCGTGGACTTTGAA-G-A
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* * **
2175294 AAAGATGCCACTGAGTCGTGGACTTTGAAGG-A
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
* ** *
2175326 AAAGATGCCACTGAGTCATGGGCTTAAAGAAGG-A
1 AAAGATGCCACGGAGTTGTGGACTT-AA-AAGGAA
* ** *
2175360 AAAGATGCCACTGAGTCATGGGCTTAAAGAAGG-A
1 AAAGATGCCACGGAGTTGTGGACTT-AA-AAGGAA
* ** *
2175394 AAAGATGCCACTGAGTCATGGGCTTAAAAGGAAA
1 AAAGATGCCACGGAGTTGTGGACTTAAAAGG-AA
* *
2175428 AAAGGGTGCCACGGAGTCGTGGACTTAAAAGGA
1 AAA-GATGCCACGGAGTTGTGGACTTAAAAGGA
2175461 TGCCACGGAG
Statistics
Matches: 411, Mismatches: 43, Indels: 57
0.80 0.08 0.11
Matches are distributed among these distances:
26 2 0.00
27 40 0.10
28 3 0.01
29 18 0.04
30 2 0.00
31 48 0.12
32 40 0.10
33 73 0.18
34 140 0.34
35 45 0.11
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.20
Consensus pattern (33 bp):
AAAGATGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:2175047 original size:27 final size:27
Alignment explanation
Indices: 2175009--2175069 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
2174999 CTTTAAAAGG
*
2175009 AAAAAGATGCCACAGAGTTGTGGACTT
1 AAAAAGGTGCCACAGAGTTGTGGACTT
*
2175036 AAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAAGGTGCCACAGAGTTGTGGACTT
*
2175063 TAAAAGG
1 AAAAAGG
2175070 AAAAAGATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (27 bp):
AAAAAGGTGCCACAGAGTTGTGGACTT
Found at i:2175069 original size:61 final size:63
Alignment explanation
Indices: 2174946--2175341 Score: 361
Period size: 61 Copynumber: 6.3 Consensus size: 63
2174936 TTAACAGAAG
** *
2174946 AAAGATGCCATGGAGTTGTGGACTTAAAAGAAAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAA
1 AAAGATGCCACAGAGTTGTGGACTT--AAGAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
2175011 AAAGATGCCACAGAGTTGTGGACTT-A-AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
1 AAAGATGCCACAGAGTTGTGGACTTAAGAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
* * * *
2175072 AAAGATGCCACAGAGTTGTGGACTTAAAAGGAACAAGATGCCACGGAGGTGTGGGC-TTAAACGG
1 AAAGATGCCACAGAGTTGTGGACTT--AA-GAA-AAGGTGCCACGGAGTTGTGGACTTTAAAAGG
2175136 AA
62 AA
* * * *
2175138 AAAGATGCCATAGGGTTGTGGACTTAAAAGGAAAAAAGGGTGTCACGGAGTCGTGGAC-TTAAAA
1 AAAGATGCCACAGAGTTGTGGACTT--AA-G--AAAA-GGTGCCACGGAGTTGTGGACTTTAAAA
2175202 GG--
60 GGAA
* * *
2175204 ---G-TGCCACGGAGTTGTGGGCTTTA-AAAAGAGTGCCACGGAGTTGTGGACTTTGAAAA-GAA
1 AAAGATGCCACAGAGTTGTGGACTTAAGAAAAG-GTGCCACGGAGTTGTGGACTTT-AAAAGGAA
* * * * * *
2175263 AAAGTTGCCACAGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTT-GAAGG-A
1 AAAGATGCCACAGAGTTGTGGAC-TT-AAGAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
*
2175326 AAAGATGCCACTGAGT
1 AAAGATGCCACAGAGT
2175342 CATGGGCTTA
Statistics
Matches: 277, Mismatches: 32, Indels: 46
0.78 0.09 0.13
Matches are distributed among these distances:
55 1 0.00
56 21 0.08
57 3 0.01
58 4 0.01
60 1 0.00
61 59 0.21
62 18 0.06
63 33 0.12
64 4 0.01
65 43 0.16
66 45 0.16
67 21 0.08
68 24 0.09
ACGTcount: A:0.35, C:0.13, G:0.31, T:0.21
Consensus pattern (63 bp):
AAAGATGCCACAGAGTTGTGGACTTAAGAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAA
Found at i:2175202 original size:27 final size:28
Alignment explanation
Indices: 2175170--2175253 Score: 116
Period size: 29 Copynumber: 3.0 Consensus size: 28
2175160 CTTAAAAGGA
* *
2175170 AAAAAGGGTGTCACGGAGTCGTGGACTT
1 AAAAAGGGTGCCACGGAGTTGTGGACTT
*
2175198 -AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGGTGCCACGGAGTTGTGGAC-TT
*
2175226 AAAAAGAGTGCCACGGAGTTGTGGACTT
1 AAAAAGGGTGCCACGGAGTTGTGGACTT
2175254 TGAAAAGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 22 0.45
28 4 0.08
29 23 0.47
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (28 bp):
AAAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:2175443 original size:256 final size:253
Alignment explanation
Indices: 2174949--2175487 Score: 689
Period size: 256 Copynumber: 2.1 Consensus size: 253
2174939 ACAGAAGAAA
* * * *
2174949 GATGCCATGGAGTTGTGGACTTAAAAGAAAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAA
1 GATGCCACGGAGTTGTGGGCTTTAAA-AAGAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAA
* * *
2175014 GATGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGATG
65 GATGCCACAGAGTCGTGGACTTAAAAAGATGCCACGGAGTCGTGGACTTTAAAAGGAAAAAGATG
** *
2175079 CCACAGAGTTGTGGACTTAAAAGGAACAAGATGCCACGGAGGTGTGGGCTTAAACGGAAAAAGAT
130 CCACAGAGTCATGGACTTAAAAGGAACAAGATGCCACGGAGGTATGGGCTTAAACGGAAAAAGAT
* ** *
2175144 GCCATAGGGTTGTGGACTTAAAAGGAAAAAAGGGTGTCACGGAGTCGTGGACTTAAAAG
195 GCCATAGAGTCATGGACTTAAAAGGAAAAAAGGGTGCCACGGAGTCGTGGACTTAAAAG
* *
2175203 GGTGCCACGGAGTTGTGGGCTTTAAAAAGA-GTGCCACGGAGTTGTGGACTTTGAAAA-GAAAAA
1 GATGCCACGGAGTTGTGGGCTTTAAAAAGAGGTGCCACAGAGTTGTGGACTTT-AAAAGGAAAAA
* * *
2175266 GTTGCCACAGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTT-GAAGG-AAAA
65 GATGCCACAGAGTCGTGGAC-TT--A-AAAAGATGCCACGGAGTCGTGGACTTTAAAAGGAAAAA
* * *
2175329 GATGCCACTGAGTCATGGGCTTAAAGAAGGAA-AAGATGCCACTGA-GTCATGGGCTTAAA-GAA
126 GATGCCACAGAGTCATGGACTT-AA-AAGGAACAAGATGCCACGGAGGT-ATGGGCTTAAACG--
* *
2175391 GGAAAAGATGCCACT-GAGTCATGGGCTTAAAAGGAAAAAAGGGTGCCACGGAGTCGTGGACTTA
186 GAAAAAGATGCCA-TAGAGTCATGGACTTAAAAGGAAAAAAGGGTGCCACGGAGTCGTGGACTTA
2175455 AAAG
250 AAAG
*
2175459 GATGCCACGGAGTTATGGGCTTTAAAAAG
1 GATGCCACGGAGTTGTGGGCTTTAAAAAG
2175488 GTATTTGAAG
Statistics
Matches: 248, Mismatches: 26, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
252 45 0.18
253 9 0.04
254 47 0.19
255 29 0.12
256 117 0.47
257 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (253 bp):
GATGCCACGGAGTTGTGGGCTTTAAAAAGAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAG
ATGCCACAGAGTCGTGGACTTAAAAAGATGCCACGGAGTCGTGGACTTTAAAAGGAAAAAGATGC
CACAGAGTCATGGACTTAAAAGGAACAAGATGCCACGGAGGTATGGGCTTAAACGGAAAAAGATG
CCATAGAGTCATGGACTTAAAAGGAAAAAAGGGTGCCACGGAGTCGTGGACTTAAAAG
Found at i:2175484 original size:28 final size:27
Alignment explanation
Indices: 2175427--2175485 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
2175417 TTAAAAGGAA
* *
2175427 AAAAGGGTGCCACGGAGTCGTGGACTT
1 AAAAGGATGCCACGGAGTCATGGACTT
* *
2175454 AAAAGGATGCCACGGAGTTATGGGCTTT
1 AAAAGGATGCCACGGAGTCATGGAC-TT
2175482 AAAA
1 AAAA
2175486 AGGTATTTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.20
Consensus pattern (27 bp):
AAAAGGATGCCACGGAGTCATGGACTT
Found at i:2175617 original size:16 final size:17
Alignment explanation
Indices: 2175586--2175623 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
2175576 GATGCAAATA
* *
2175586 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
2175603 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
2175619 ATGAT
1 ATGAT
2175624 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:2176519 original size:6 final size:6
Alignment explanation
Indices: 2176508--2176536 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
2176498 AGATTTTCGG
2176508 TTTTGT TTTTGT TTTTGT TTTT-T TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
2176537 GTGTGAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTGT
Found at i:2176530 original size:79 final size:78
Alignment explanation
Indices: 2176446--2176614 Score: 320
Period size: 79 Copynumber: 2.2 Consensus size: 78
2176436 TCTCTTCTTT
2176446 TTTTTTTTTTGTGTGTGAAGATTAGGTGAGTCTCAAAACTTATATCTCACTGAGATTTTCGGTTT
1 TTTTTTTTTTGTGTGTGAAGATTAGGTGAGTCTCAAAACTTATATCTCACTGAGATTTTCGGTTT
2176511 TGTTTTTGTTTTTG
66 TGTTTTTG-TTTTG
*
2176525 TTTTTTTTTTGTGTGTGAAGATTAGGTGAGTCTCAAAACTTATGTCTCACTGAGATTTTCGGTTT
1 TTTTTTTTTTGTGTGTGAAGATTAGGTGAGTCTCAAAACTTATATCTCACTGAGATTTTCGGTTT
2176590 TGTTTTTGTTTTG
66 TGTTTTTGTTTTG
2176603 TTTTTTTTTTGT
1 TTTTTTTTTTGT
2176615 TGTTGTTTGG
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
78 17 0.19
79 72 0.81
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (78 bp):
TTTTTTTTTTGTGTGTGAAGATTAGGTGAGTCTCAAAACTTATATCTCACTGAGATTTTCGGTTT
TGTTTTTGTTTTG
Found at i:2176602 original size:11 final size:11
Alignment explanation
Indices: 2176586--2176622 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
2176576 GAGATTTTCG
2176586 GTTTTGTTTTT
1 GTTTTGTTTTT
2176597 GTTTTGTTTTT
1 GTTTTGTTTTT
* *
2176608 TTTTTGTTGTT
1 GTTTTGTTTTT
2176619 GTTT
1 GTTT
2176623 GGAAAAGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (11 bp):
GTTTTGTTTTT
Found at i:2176773 original size:18 final size:18
Alignment explanation
Indices: 2176750--2176786 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2176740 CAAGGATCAC
2176750 TTTTGTTCATATGGGCAT
1 TTTTGTTCATATGGGCAT
2176768 TTTTGTTCATATGGGCAT
1 TTTTGTTCATATGGGCAT
2176786 T
1 T
2176787 CATGTCCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.11, G:0.22, T:0.51
Consensus pattern (18 bp):
TTTTGTTCATATGGGCAT
Found at i:2176858 original size:13 final size:13
Alignment explanation
Indices: 2176840--2176872 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
2176830 GCCTTTACAC
2176840 TTTTTTTTTTGTG
1 TTTTTTTTTTGTG
*
2176853 TTTTTTTTTTTTG
1 TTTTTTTTTTGTG
2176866 TTTTTTT
1 TTTTTTT
2176873 GTGTTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (13 bp):
TTTTTTTTTTGTG
Found at i:2176858 original size:15 final size:14
Alignment explanation
Indices: 2176840--2176872 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
2176830 GCCTTTACAC
2176840 TTTTTTTTTTGTGTT
1 TTTTTTTTTTGT-TT
2176855 TTTTTTTTTTGTTT
1 TTTTTTTTTTGTTT
2176869 TTTT
1 TTTT
2176873 GTGTTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (14 bp):
TTTTTTTTTTGTTT
Found at i:2176884 original size:23 final size:23
Alignment explanation
Indices: 2176841--2176897 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
2176831 CCTTTACACT
* **
2176841 TTTTTTTTTGTGTTT-TTTTTTT
1 TTTTTTTTTGTGTTTACTTTTGA
2176863 TTGTTTTTTTGTGTTTACTTTTGA
1 TT-TTTTTTTGTGTTTACTTTTGA
2176887 TTTTTTTTTGT
1 TTTTTTTTTGT
2176898 CATCATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.07
23 22 0.73
24 6 0.20
ACGTcount: A:0.04, C:0.02, G:0.12, T:0.82
Consensus pattern (23 bp):
TTTTTTTTTGTGTTTACTTTTGA
Found at i:2183509 original size:13 final size:13
Alignment explanation
Indices: 2183491--2183518 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2183481 ATACAAAGAT
2183491 CAATGTATCGATA
1 CAATGTATCGATA
2183504 CAATGTATCGATA
1 CAATGTATCGATA
2183517 CA
1 CA
2183519 TTGAGTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Done.