Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2772588
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 118404 characters in sequence are not A, C, G, or T
File 18 of 18
Found at i:2742153 original size:13 final size:14
Alignment explanation
Indices: 2742130--2742164 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
2742120 TATGAGATAT
2742130 TAAAGTTACAAGTA
1 TAAAGTTACAAGTA
*
2742144 TAAA-TTACAATTA
1 TAAAGTTACAAGTA
2742157 TAAAGTTA
1 TAAAGTTA
2742165 TTATTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (14 bp):
TAAAGTTACAAGTA
Found at i:2745439 original size:22 final size:22
Alignment explanation
Indices: 2745414--2745492 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
2745404 TTGAGCTTTT
* *
2745414 AGTTTAAGTTTAGATAGG-CTTA
1 AGTTTAAGTTTAAAT-GGATTTA
* *
2745436 AGTTTAGGTTTAAATGGGATTTT
1 AGTTTAAGTTTAAAT-GGATTTA
*
2745459 AGTTTAGGTTTAAATGGATTTA
1 AGTTTAAGTTTAAATGGATTTA
2745481 AGTTTAAGTTTA
1 AGTTTAAGTTTA
2745493 TATTTTATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
22 32 0.65
23 17 0.35
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (22 bp):
AGTTTAAGTTTAAATGGATTTA
Found at i:2747055 original size:24 final size:23
Alignment explanation
Indices: 2747008--2747056 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2746998 ACTGAATTTT
*
2747008 TTATTTTTATTAAATTTATTATA
1 TTATTTTTATTAAATTTATAATA
2747031 TTATTTTTATTTAATATTTA-AATA
1 TTATTTTTA-TTAA-ATTTATAATA
2747055 TT
1 TT
2747057 TTTAAGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 9 0.39
24 9 0.39
25 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTTTTATTAAATTTATAATA
Found at i:2748785 original size:13 final size:13
Alignment explanation
Indices: 2748767--2748792 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2748757 CAATTTTTTG
2748767 TGTATCGATACAT
1 TGTATCGATACAT
2748780 TGTATCGATACAT
1 TGTATCGATACAT
2748793 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2748857 original size:21 final size:21
Alignment explanation
Indices: 2748831--2748906 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2748821 CTGCCAAGAA
* *
2748831 ATGTATCAATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
2748852 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2748872 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2748893 ATGTATCGATACAT
1 ATGTATCGATACAT
2748907 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2748877 original size:20 final size:20
Alignment explanation
Indices: 2748852--2748924 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2748842 CATCTTTTTT
2748852 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
2748872 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
2748893 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2748913 ATGTATCGATAC
1 ATGTATCGATAC
2748925 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2748888 original size:41 final size:41
Alignment explanation
Indices: 2748831--2748924 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2748821 CTGCCAAGAA
* *
2748831 ATGTATCAATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2748872 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2748913 ATGTATCGATAC
1 ATGTATCGATAC
2748925 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2751385 original size:13 final size:13
Alignment explanation
Indices: 2751367--2751405 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2751357 ATAATCACCC
*
2751367 TGTATCGATACAG
1 TGTATCGATACAA
2751380 TGTATCGATACAA
1 TGTATCGATACAA
2751393 TGTATCGATACAA
1 TGTATCGATACAA
2751406 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2751416 original size:20 final size:20
Alignment explanation
Indices: 2751391--2751469 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
2751381 GTATCGATAC
2751391 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
2751411 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
2751436 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
2751456 CATGTATCGATACA
1 AATGTATCGATACA
2751470 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:2755345 original size:21 final size:21
Alignment explanation
Indices: 2755316--2755360 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2755306 AAGTTTTCAT
*
2755316 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2755336 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2755358 TTT
1 TTT
2755361 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2757594 original size:13 final size:13
Alignment explanation
Indices: 2757576--2757601 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2757566 CAATTTTTTG
2757576 TGTATCGATACAT
1 TGTATCGATACAT
2757589 TGTATCGATACAT
1 TGTATCGATACAT
2757602 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2757666 original size:21 final size:21
Alignment explanation
Indices: 2757640--2757715 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2757630 CTGCCAAGAA
* *
2757640 ATGTATCAATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
2757661 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2757681 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2757702 ATGTATCGATACAT
1 ATGTATCGATACAT
2757716 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2757686 original size:20 final size:20
Alignment explanation
Indices: 2757661--2757733 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2757651 CATCTTTTTT
2757661 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
2757681 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
2757702 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2757722 ATGTATCGATAC
1 ATGTATCGATAC
2757734 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2757697 original size:41 final size:41
Alignment explanation
Indices: 2757640--2757733 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2757630 CTGCCAAGAA
* *
2757640 ATGTATCAATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2757681 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2757722 ATGTATCGATAC
1 ATGTATCGATAC
2757734 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2758681 original size:22 final size:21
Alignment explanation
Indices: 2758656--2758703 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
2758646 CAATTAATAA
2758656 AAAAAATAAATCATAAAAACAC
1 AAAAAATAAAT-ATAAAAACAC
* * *
2758678 AAAAAATAACTTTAAAAACTC
1 AAAAAATAAATATAAAAACAC
2758699 AAAAA
1 AAAAA
2758704 TACCATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAAAATAAATATAAAAACAC
Found at i:2759348 original size:18 final size:18
Alignment explanation
Indices: 2759322--2759364 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
2759312 TTATTAAAAA
*
2759322 ATTTGAATAAAATATATT
1 ATTTGAATAAAAAATATT
*
2759340 ATTTTAATAAAAAATATT
1 ATTTGAATAAAAAATATT
2759358 ATTTGAA
1 ATTTGAA
2759365 ATCAAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
ATTTGAATAAAAAATATT
Found at i:2759800 original size:22 final size:22
Alignment explanation
Indices: 2759749--2759802 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
2759739 ATGAAAAAAT
*
2759749 ATTTTTTAAAATTTAATTATAA
1 ATTTTTTTAAATTTAATTATAA
* *
2759771 A-ATATTTAAATATTAA-TATAA
1 ATTTTTTTAAAT-TTAATTATAA
2759792 ATTTTTTTAAA
1 ATTTTTTTAAA
2759803 AAAATTGTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTTTTTTAAATTTAATTATAA
Found at i:2763033 original size:17 final size:16
Alignment explanation
Indices: 2763013--2763049 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
2763003 AAATATTTAA
*
2763013 ATATTAAATAAGTAATT
1 ATATTAAATAAAT-ATT
2763030 ATATTAAATAAATATT
1 ATATTAAATAAATATT
2763046 ATAT
1 ATAT
2763050 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
ATATTAAATAAATATT
Found at i:2764804 original size:58 final size:59
Alignment explanation
Indices: 2764697--2764812 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 59
2764687 TGTAATAATA
*
2764697 TATTAAAAAAGATTAATAATCATGACTTTGAAATATAAAAAATCATTCATAAAAATTTAT
1 TATTAAAAAAGATTAATAATCAT-ACTTTAAAATATAAAAAATCATTCATAAAAATTTAT
* * * *
2764757 TATTAAAAATGATTAATAATTAT-TTTTAAAATATAAAATATCATTCATAAAAATTT
1 TATTAAAAAAGATTAATAATCATACTTTAAAATATAAAAAATCATTCATAAAAATTT
2764813 TAAAGTTGAG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 30 0.59
60 21 0.41
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (59 bp):
TATTAAAAAAGATTAATAATCATACTTTAAAATATAAAAAATCATTCATAAAAATTTAT
Found at i:2765015 original size:16 final size:16
Alignment explanation
Indices: 2764980--2765016 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
2764970 TCGTTTTAAA
*
2764980 AATCTATTATTTTTGT
1 AATCTATTAATTTTGT
2764996 -ATCTATTAATTTTGT
1 AATCTATTAATTTTGT
2765011 AATCTA
1 AATCTA
2765017 ACCTGAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.57
Consensus pattern (16 bp):
AATCTATTAATTTTGT
Found at i:2765840 original size:3 final size:3
Alignment explanation
Indices: 2765832--2765878 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
2765822 ATAAAACTCC
*
2765832 ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
2765879 GACATCTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:2767687 original size:29 final size:30
Alignment explanation
Indices: 2767661--2767720 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
2767651 AAATATTATT
*
2767661 TTTATATAAAAATA-TATTTTATAATTAAA
1 TTTAAATAAAAATATTATTTTATAATTAAA
* *
2767690 TTTAAATATAAATATTATTTTATTATTAAA
1 TTTAAATAAAAATATTATTTTATAATTAAA
2767720 T
1 T
2767721 AATAATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTAAATAAAAATATTATTTTATAATTAAA
Found at i:2768570 original size:22 final size:22
Alignment explanation
Indices: 2768516--2768570 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
2768506 TATACATATT
* *
2768516 TAATATATTAATAATAGTTTTA
1 TAATATATTATTAATAGTTATA
2768538 TAATATATTATTAATA-TTATA
1 TAATATATTATTAATAGTTATA
2768559 TAATAATATTAT
1 TAAT-ATATTAT
2768571 ATTTAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TAATATATTATTAATAGTTATA
Found at i:2769332 original size:8 final size:8
Alignment explanation
Indices: 2769319--2769348 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
2769309 CCATTTGCAT
2769319 ATATATAA
1 ATATATAA
2769327 ATATATAA
1 ATATATAA
*
2769335 ATATATAT
1 ATATATAA
2769343 ATATAT
1 ATATAT
2769349 CCTAGGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATATAA
Found at i:2770273 original size:7 final size:7
Alignment explanation
Indices: 2770263--2770291 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
2770253 TATTAATTAA
2770263 TTAAATT
1 TTAAATT
2770270 TTAAATT
1 TTAAATT
2770277 TTAAA-T
1 TTAAATT
2770283 TTAAATT
1 TTAAATT
2770290 TT
1 TT
2770292 TATCTAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTAAATT
Found at i:2770519 original size:14 final size:15
Alignment explanation
Indices: 2770502--2770530 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2770492 TTAATTTTAA
2770502 AATATAAAAA-AATT
1 AATATAAAAATAATT
2770516 AATATAAAAATAATT
1 AATATAAAAATAATT
2770531 TATTAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AATATAAAAATAATT
Found at i:2770776 original size:2 final size:2
Alignment explanation
Indices: 2770769--2770814 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
2770759 CCCTATATTA
2770769 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
2770811 CT CT
1 CT CT
2770815 ATATATATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2771700 original size:2 final size:2
Alignment explanation
Indices: 2771693--2771730 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
2771683 AATTTCTACT
*
2771693 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA CA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2771731 CTGTTTTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2772476 original size:18 final size:18
Alignment explanation
Indices: 2772453--2772489 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2772443 ATTATATTTA
* *
2772453 AAATTTTTATATTTATAT
1 AAATTTTAATATATATAT
2772471 AAATTTTAATATATATAT
1 AAATTTTAATATATATAT
2772489 A
1 A
2772490 TATTCATATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AAATTTTAATATATATAT
Done.