Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold141
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2772588
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.32
Warning! 118404 characters in sequence are not A, C, G, or T
File 4 of 18
Found at i:686510 original size:61 final size:60
Alignment explanation
Indices: 686193--686617 Score: 394
Period size: 61 Copynumber: 6.9 Consensus size: 60
686183 ATCTCTCTTC
* * *
686193 TCAAAGTCCACGACTCAGTGGCATCTCTT-TTCTAAGTCCACGACTCAGTGGCATCCTTTT
1 TCAAAGTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACAACTCAGTGGCATCC-TTT
* * *
686253 CTCCAAAGTCCACAATTTAGTGGCATCTTTTCTT-TAAATTCCACAACTCAGTGGCATCTCTTT
1 -T-CAAAGTCCACGACTTAGTGGCATCTTTTCTTCT-AAGTCCACAACTCAGTGGCATC-CTTT
* * * * * *
686316 TCTAAGTTCACGACTCAGTGGCATCCATGTCTTCAAAGTCCACAACTCAGTGGCATCCCTTT
1 TCAAAGTCCACGACTTAGTGGCAT-CTTTTCTTCTAAGTCCACAACTCAGTGGCAT-CCTTT
* * *
686378 TCTAACTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACGACTCAGTGGCATCCCTTT
1 TCAAAGTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACAACTCAGTGGCAT-CCTTT
* * *
686439 TCTAACTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACGACTCAGTGGCAT-CTTGT
1 TCAAAGTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACAACTCAGTGGCATCCTT-T
* * * * *
686499 CCCAAAGTCCACGAC-TATGTGGCATTTTTTTCTTTTCAAAGTCCACAACTCTGTGGCACCCTTT
1 -TCAAAGTCCACGACTTA-GTGGCA-TCTTTTC--TTCTAAGTCCACAACTCAGTGGCATCCTTT
* * * * * *
686563 T--AAGTCCACAACTTCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCTGTGGCA
1 TCAAAGTCCACGACTTAGTGGCATC-TTTTC-TTCT-AAGTCCACAACTCAGTGGCA
686618 CTTTTTTTCC
Statistics
Matches: 308, Mismatches: 39, Indels: 34
0.81 0.10 0.09
Matches are distributed among these distances:
59 3 0.01
60 5 0.02
61 164 0.53
62 84 0.27
63 26 0.08
64 23 0.07
65 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (60 bp):
TCAAAGTCCACGACTTAGTGGCATCTTTTCTTCTAAGTCCACAACTCAGTGGCATCCTTT
Found at i:686618 original size:61 final size:60
Alignment explanation
Indices: 686258--686872 Score: 210
Period size: 61 Copynumber: 9.9 Consensus size: 60
686248 CTTTTCTCCA
* * * * ** * *
686258 AAGTCCACAATTTAGTGGCATC-TTTTCTTTAAATTCCACAACTCAGTGGCATCTCTTTTCT
1 AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCA-CTCCTTT-T
* * * * ** * *
686319 AAGTTCACGAC-TCAGTGGCATCC-ATGTCTTCAAAGTCCACAACTCAGTGGCA-TCCCTTTTCT
1 AAGTCCACAACTTC-GTGGCA-CCTTTTTCTTTTAAGCCCACAACTCCGTGGCACT-CC-TTT-T
* * * * * * * *
686381 AACTCCACGACTTAGTGGCATC-TTTTCTTCTAAGTCCACGACTCAGTGGCA-TCCCTTTTCT
1 AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCACT-CC-TTT-T
* * * * * * * * *
686442 AACTCCACGACTTAGTGGCATC-TTTTCTTCTAAGTCCACGACTCAGTGGCA-T-CTTGTCCCA
1 AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCCTT-T---T
* ** * *
686503 AAGTCCACGACTAT-GTGGCATTTTTTTCTTTTCAAAGTCCACAACTCTGTGGCAC-CCTTTT
1 AAGTCCACAACT-TCGTGGCACCTTTTTCTTTT--AAGCCCACAACTCCGTGGCACTCCTTTT
*
686564 AAGTCCACAACTTCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCTGTGGCACTTTTTTTCCT
1 AAGTCCACAACTTCGTGGCACCTTTTTC-TTTT-AAGCCCACAACTCCGTGGCAC------TCCT
686629 TTT
58 TTT
* * *
686632 AAGTCTACAACTTCGTGGCGCC-----CTTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCA-C----TCCTTTT
* *
686692 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACTCATTTTCCTT
1 AAGTCCACAACTTCGTGGCACCTT-TTTCTTTTAAGCCCACAACTCCGTGGCA--C----TCCTT
686757 TT
59 TT
* * *
686759 AAGTCCACAACTTCATGGCACC-----CTTTTAAGTCCACAACTCCATGGCATCTTTTTCCTTTT
1 AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCA-C----TCCTTTT
* * * * ** *
686819 AAGTCCATAACTCCATGGCACCTTGTTCCTTTTAAGTTCACAACTTCGTGGCAC
1 AAGTCCACAACTTCGTGGCACCTT-TTTCTTTTAAGCCCACAACTCCGTGGCAC
686873 CTTTTTTTTT
Statistics
Matches: 469, Mismatches: 48, Indels: 70
0.80 0.08 0.12
Matches are distributed among these distances:
58 2 0.00
59 2 0.00
60 65 0.14
61 207 0.44
62 64 0.14
63 2 0.00
64 19 0.04
65 4 0.01
66 46 0.10
67 32 0.07
68 26 0.06
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (60 bp):
AAGTCCACAACTTCGTGGCACCTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCCTTTT
Found at i:686622 original size:33 final size:33
Alignment explanation
Indices: 686503--686972 Score: 335
Period size: 33 Copynumber: 14.6 Consensus size: 33
686493 TCTTGTCCCA
* * * *
686503 AAGTCCACGACTATGTGGCA-TTTTTTTCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
686535 CAAAGTCCACAACTCTGTGGCA-C-----CCTTTT
1 --AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
*
686564 AAGTCCACAACT-TCGTGGCACCTTTTTCATTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCCTTTT
* *
686597 AAAGCCCACAACTCTGTGGCACTTTTTTTCCTTTT
1 -AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
* *
686632 AAGTCTACAACT-TCGTGGC-GC-----CCTTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCCTTTT
* *
686659 AAGTCCACAACTCCGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* *
686692 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* * *
686725 AAGCCCACAACTCCGTGGCACTCATTTTCCTTTT
1 AAGTCCACAACTCTGTGGCAC-CTTTTTCCTTTT
*
686759 AAGTCCACAACT-TCATGGCA-C-----CCTTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCCTTTT
** *
686786 AAGTCCACAACTCCATGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* ** *
686819 AAGTCCATAACTCCATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
* *
686852 AAGTTCACAACT-TCGTGGCACCTTTTT-TTTTT
1 AAGTCCACAACTCT-GTGGCACCTTTTTCCTTTT
* *
686884 AAGTCCACGACTCTGTGGCACCCTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCA-CCTTTTTCCTTTT
* * * *
686918 AAG-CATACACCTCCGTGGCATCCCTTTTTCC-TGT
1 AAGTC-CACAACTCTGTGGCA--CCTTTTTCCTTTT
* *
686952 AAATCCACAACTCCGTGGCAC
1 AAGTCCACAACTCTGTGGCAC
686973 GAGTCCACTA
Statistics
Matches: 356, Mismatches: 46, Indels: 70
0.75 0.10 0.15
Matches are distributed among these distances:
26 1 0.00
27 64 0.18
28 3 0.01
29 5 0.01
32 22 0.06
33 128 0.36
34 112 0.31
35 21 0.06
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (33 bp):
AAGTCCACAACTCTGTGGCACCTTTTTCCTTTT
Found at i:686762 original size:127 final size:126
Alignment explanation
Indices: 686558--686910 Score: 503
Period size: 127 Copynumber: 2.8 Consensus size: 126
686548 TCTGTGGCAC
* * * * *
686558 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCTGTGGCACTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGCCCACAACTCCGTGGCAC-TCT
* * *
686623 TTTCCTTTTAAGTCTACAACTTCGTGGCGCCCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
64 TTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCATCTTTTT
686686 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACTCATT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACTC-TT
*
686751 TTCCTTTTAAGTCCACAACTTCATGGCACCCTTTTAAGTCCACAACTCCATGGCATCTTTTT
65 TTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCATCTTTTT
* * ** *
686813 CCTTTTAAGTCCATAACTCCATGGCACCTTGTTCCTTTTAAGTTCACAACTTCGTGGCAC-CTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTT
** *
686877 TTTTTTTAAGTCCACGAC-TCTGTGGCACCCTTTT
66 TCCTTTTAAGTCCACAACTTC-GTGGCACCCTTTT
686911 CCCTTTTAAG
Statistics
Matches: 205, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
124 2 0.01
125 30 0.15
126 2 0.01
127 135 0.66
128 36 0.18
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (126 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTT
TCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCATCTTTTT
Found at i:686802 original size:27 final size:27
Alignment explanation
Indices: 686753--686840 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 27
686743 CACTCATTTT
*
686753 CCTTTTAAGTCCACAACTTCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
686780 CCTTTTAAGTCCACAACTCCATGGCATC
1 CCTTTTAAGTCCACAACTCCATGGCA-C
*
686808 TTTTTCCTTTTAAGTCCATAACTCCATGGCAC
1 -----CCTTTTAAGTCCACAACTCCATGGCAC
686840 C
1 C
686841 TTGTTCCTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
27 26 0.49
28 1 0.02
32 1 0.02
33 25 0.47
ACGTcount: A:0.24, C:0.33, G:0.10, T:0.33
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCATGGCAC
Found at i:687006 original size:22 final size:22
Alignment explanation
Indices: 686981--687049 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
686971 ACGAGTCCAC
686981 TATTGCTGGCCTTGAATCAGCA
1 TATTGCTGGCCTTGAATCAGCA
* *
687003 TATTG--GCACCTTTAAGTC--CAA
1 TATTGCTG-GCCTTGAA-TCAGC-A
*
687024 TATCGCTGGCCTTGAATCAGCA
1 TATTGCTGGCCTTGAATCAGCA
687046 TATT
1 TATT
687050 AGCACCTTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 17 0.50
23 2 0.06
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (22 bp):
TATTGCTGGCCTTGAATCAGCA
Found at i:687227 original size:49 final size:48
Alignment explanation
Indices: 687167--687782 Score: 487
Period size: 49 Copynumber: 13.2 Consensus size: 48
687157 AATATCCCTA
* * *
687167 GCCTTGAATCAGCATATTGGCACCTTCATCTCTAAAACCAATGTCGTTG
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTG
* * * *
687216 GCCTTGAATCAGCACATTGG-----CA----TAAGCCCAATATCACTG
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
* * * *
687255 GCCTTGAATCAGCATATAGGCTCTTTATCTTTAAAACCAATGTCGCTG
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
* * *
687303 GTCTTGAATCAGTATATTGGCACTTTATCTTTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
* * *
687351 GCCTTGAATCAGCACATTGG-----CA-C---AAGCCCAATATCGCTG
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
*
687390 GCCTTGAATCAGCATATTGGCACCTTCATCTCTAAGACCAATGTCGCTG
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTG
* * * *
687439 GCCTTGAATCAGCACATTGG-----CA----TAAGCCCAATATCGTTG
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
* * *
687478 GCCTTGAATCAACATATTGGCACTTTATCTTTAAGACCAATGTCGCTA
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
* *
687526 GCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACCAATGTCACTG
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTG
* * *
687575 GCCTTGAATCAACATATTGGCACCTTCATCTTTAAGACTAATGTCGCTA
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTG
* * * ** * * *
687624 GCCTTGAATCAGCACATTGGCATCTTCATCATTAAGTCTGATATTGTTG
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTG
* * * *
687673 GCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGTTG
1 GCCTTGAATCAGCATATTGGCA-CTTCATC-TT--TAAGACCAATGTCGCTG
** * * * * * * *
687725 GCCTTGTCTCAGCACATTAGCA-TTCTTCTTCAAGTCTAATGTCGCTA
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
*
687772 GCCATGAATCA
1 GCCTTGAATCA
687783 ACACATTGTC
Statistics
Matches: 452, Mismatches: 83, Indels: 66
0.75 0.14 0.11
Matches are distributed among these distances:
39 95 0.21
42 1 0.00
43 5 0.01
44 2 0.00
45 2 0.00
46 1 0.00
47 20 0.04
48 106 0.23
49 186 0.41
50 4 0.01
52 30 0.07
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (48 bp):
GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTG
Found at i:687228 original size:88 final size:87
Alignment explanation
Indices: 687068--687325 Score: 363
Period size: 88 Copynumber: 3.0 Consensus size: 87
687058 CATCTTGAGT
* * * * *
687068 CCAATATCGCTGGCATTGAATTAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAAACCAATGTCGCTGGCCTT
687133 GAATCAGCACATTGGCACAAGC
66 GAATCAGCACATTGGCACAAGC
* * * *
687155 CCAATATCCCTAGCCTTGAATCAGCATATTGGCACCTTCATCTCTAAAACCAATGTCGTTGGCCT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAAACCAATGTCGCTGGCCT
*
687220 TGAATCAGCACATTGGCATAAGC
65 TGAATCAGCACATTGGCACAAGC
* * * *
687243 CCAATATCACTGGCCTTGAATCAGCATATAGGCTCTTTATCTTTAAAACCAATGTCGCTGGTCTT
1 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAAACCAATGTCGCTGGCCTT
* *
687308 GAATCAGTATATTGGCAC
66 GAATCAGCACATTGGCAC
687326 TTTATCTTTA
Statistics
Matches: 150, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
87 73 0.49
88 77 0.51
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (87 bp):
CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAAACCAATGTCGCTGGCCTT
GAATCAGCACATTGGCACAAGC
Found at i:687311 original size:136 final size:136
Alignment explanation
Indices: 687167--687646 Score: 548
Period size: 136 Copynumber: 3.5 Consensus size: 136
687157 AATATCCCTA
* * *
687167 GCCTTGAATCAGCATATTGGCACCTTCATCTCTAAAACCAATGTCGTTGGCCTTGAATCAGCACA
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
* * * *
687232 TTGGCATAAGCCCAATATCACTGGCCTTGAATCAGCATATAGGC-TCTTTATCTTTAAAACCAAT
65 TTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAAT
687296 GTCGCTG
130 GTCGCTG
* * *
687303 GTCTTGAATCAGTATATTGGCACTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* * *
687368 TGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTCTAAGACCAATG
66 TGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATG
687433 TCGCTG
131 TCGCTG
* * * * * *
687439 GCCTTGAATCAGCACATTGG-----CA----TAAGCCCAATATCGTTGGCCTTGAATCAACATAT
1 GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* * * *
687495 TGGCACTTTATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTA
66 TGG--C---A----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTA
*
687560 AGACCAATGTCACTG
122 AGACCAATGTCGCTG
* * *
687575 GCCTTGAATCAACATATTGGCACCTTCATCTTTAAGACTAATGTCGCTAGCCTTGAATCAGCACA
1 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
687640 TTGGCAT
65 TTGGCAT
687647 CTTCATCATT
Statistics
Matches: 285, Mismatches: 39, Indels: 39
0.79 0.11 0.11
Matches are distributed among these distances:
127 32 0.11
129 1 0.00
131 1 0.00
132 1 0.00
135 79 0.28
136 136 0.48
137 1 0.00
141 1 0.00
142 2 0.01
144 1 0.00
146 30 0.11
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (136 bp):
GCCTTGAATCAGCATATTGGCACTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
TGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATG
TCGCTG
Found at i:687379 original size:223 final size:222
Alignment explanation
Indices: 686985--687597 Score: 888
Period size: 223 Copynumber: 2.7 Consensus size: 222
686975 GTCCACTATT
* *
686985 GCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 GCTGGCCTTGAATCAGCACATTGGCA----TAAGCCCAATATCGCTGGCCTTGAATCAGCATA-T
* * * * * * *
687050 A-GCACCTTCATC-TTGAGTCCAATATCGCTGGCATTGAATTAGCATATTGGCACCTTGTCTTTA
61 AGGCA-CTTTATCTTTAAGACCAATGTCGCTGGC-TTGAATCAGCATATTGGCACTTTATCTTTA
687113 AGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCCCTAGCCTTGAATCA
124 AGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCCCTAGCCTTGAATCA
687178 GCATATTGGCACCTTCATCTCTAAAACCAATGTC
189 GCATATTGGCACCTTCATCTCTAAAACCAATGTC
* * *
687212 GTTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCACTGGCCTTGAATCAGCATATAGGCT
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATAGGCA
* *
687277 CTTTATCTTTAAAACCAATGTCGCTGGTCTTGAATCAGTATATTGGCACTTTATCTTTAAGACCA
66 CTTTATCTTTAAGACCAATGTCGCTGG-CTTGAATCAGCATATTGGCACTTTATCTTTAAGACCA
* *
687342 ATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATAT
130 ATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCCCTAGCCTTGAATCAGCATAT
*
687407 TGGCACCTTCATCTCTAAGACCAATGTC
195 TGGCACCTTCATCTCTAAAACCAATGTC
* * *
687435 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGTTGGCCTTGAATCAACATATTGGCA
1 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATAGGCA
* * *
687500 CTTTATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGACC
66 CTTTATCTTTAAGACCAATGTCGCT-GGCTTGAATCAGCATATTGGCA-CTTTATCTTTAAGACC
* * *
687565 AATGTCACTGGCCTTGAATCAACATATTGGCAC
129 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
687598 CTTCATCTTT
Statistics
Matches: 350, Mismatches: 31, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
222 8 0.02
223 271 0.77
224 47 0.13
227 24 0.07
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (222 bp):
GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATAGGCA
CTTTATCTTTAAGACCAATGTCGCTGGCTTGAATCAGCATATTGGCACTTTATCTTTAAGACCAA
TGTCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCCCTAGCCTTGAATCAGCATATT
GGCACCTTCATCTCTAAAACCAATGTC
Found at i:687393 original size:39 final size:39
Alignment explanation
Indices: 687339--687500 Score: 162
Period size: 39 Copynumber: 3.9 Consensus size: 39
687329 ATCTTTAAGA
*
687339 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGC
* *
687378 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTCTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGG------CA---C-AAGC
* *
687427 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCATAAGC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGC
* * *
687466 CCAATATCGTTGGCCTTGAATCAACATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
687501 TTTATCTTTA
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
39 63 0.62
43 2 0.02
45 2 0.02
48 1 0.01
49 33 0.33
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCACAAGC
Found at i:687453 original size:88 final size:87
Alignment explanation
Indices: 687291--687645 Score: 458
Period size: 88 Copynumber: 3.9 Consensus size: 87
687281 ATCTTTAAAA
* * ** * *
687291 CCAATGTCGCTGGTCTTGAATCAGTATATTGGCACTTTATCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCACTTCATCTTTAAGACCAATGTCGCTAGCCTT
687356 GAATCAGCACATTGGCACAAGC
66 GAATCAGCACATTGGCACAAGC
* * *
687378 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTCTAAGACCAATGTCGCTGGCCT
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTAGCCT
*
687443 TGAATCAGCACATTGGCATAAGC
65 TGAATCAGCACATTGGCACAAGC
* *
687466 CCAATATCGTTGGCCTTGAATCAACATATTGGCACTTTATCTTTAAGACCAATGTCGCTAGCCTT
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCACTTCATCTTTAAGACCAATGTCGCTAGCCTT
*
687531 GAATCAGCACATTGGCATCTTCATCTTTAAGA
66 GAATCAGCACATTGG------CA-C---AAGC
* * *
687563 CCAATGTCACTGGCCTTGAATCAACATATTGGCACCTTCATCTTTAAGACTAATGTCGCTAGCCT
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCA-CTTCATCTTTAAGACCAATGTCGCTAGCCT
687628 TGAATCAGCACATTGGCA
65 TGAATCAGCACATTGGCA
687646 TCTTCATCAT
Statistics
Matches: 238, Mismatches: 18, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
87 74 0.31
88 82 0.34
92 2 0.01
93 2 0.01
97 34 0.14
98 44 0.18
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (87 bp):
CCAATATCGCTGGCCTTGAATCAACATATTGGCACTTCATCTTTAAGACCAATGTCGCTAGCCTT
GAATCAGCACATTGGCACAAGC
Found at i:688659 original size:33 final size:33
Alignment explanation
Indices: 688617--688683 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
688607 GCCAAGGAAA
*
688617 TGTATCGATACATTATTTAATGCATCGATACAT
1 TGTATCGATACATTATTCAATGCATCGATACAT
* *
688650 TGTATCGATACATTATTCAGTGTATCGATACAT
1 TGTATCGATACATTATTCAATGCATCGATACAT
688683 T
1 T
688684 TGGGAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATTATTCAATGCATCGATACAT
Found at i:692495 original size:456 final size:456
Alignment explanation
Indices: 691642--692557 Score: 1796
Period size: 456 Copynumber: 2.0 Consensus size: 456
691632 TAGTGACCAT
691642 TGAAGATCAATTAGATAGGCGATTCACCTACCGATCTTCCCCCCTTTAATCAACATACTTCCCAT
1 TGAAGATCAATTAGATAGGCGATTCACCTACCGATCTTCCCCCCTTTAATCAACATACTTCCCAT
*
691707 CATGCCATAGAAATCCCCAATCACGAGGGATATTAAGTCGAGCGCGCCTCATTTGCCCAATCACC
66 CATGCCATAGAAATCCCCAATCACGAGGGATATTAAGTCAAGCGCGCCTCATTTGCCCAATCACC
691772 GGGGTCAAGCACACATTGCGACAATTATAATCCTTGATATTTTTTTAAACAAATTTTTATTACAT
131 GGGGTCAAGCACACATTGCGACAATTATAATCCTTGATATTTTTTTAAACAAATTTTTATTACAT
691837 TTTTTACTTATAAAAGTCAATATATGTTGCTTGTATTTTTCACTAACCCTTGTGTTTTCCTTGCA
196 TTTTTACTTATAAAAGTCAATATATGTTGCTTGTATTTTTCACTAACCCTTGTGTTTTCCTTGCA
691902 GCTTATTTTTAGGGAAATTTAGGATAAATTTTTTTATTTTTAGTCATAACAGTTAAGTTTGTTCC
261 GCTTATTTTTAGGGAAATTTAGGATAAATTTTTTTATTTTTAGTCATAACAGTTAAGTTTGTTCC
691967 CCGGCACACACTATGCATATGTATATGCATTAGTTTTTCTTTTTGATTTTCGAAGGGGCATAGAT
326 CCGGCACACACTATGCATATGTATATGCATTAGTTTTTCTTTTTGATTTTCGAAGGGGCATAGAT
692032 ACCTGATATTTTAAAAGAGGATGAAGTAGCTCTGCCCTCTGAGGCATTAGCCTCTATTTGGGCCA
391 ACCTGATATTTTAAAAGAGGATGAAGTAGCTCTGCCCTCTGAGGCATTAGCCTCTATTTGGGCCA
692097 A
456 A
692098 TGAAGATCAATTAGATAGGCGATTCACCTACCGATCTTCCCCCCTTTAATCAACATACTTCCCAT
1 TGAAGATCAATTAGATAGGCGATTCACCTACCGATCTTCCCCCCTTTAATCAACATACTTCCCAT
692163 CATGCCATAGAAATCCCCAATCACGAGGGATATTAAGTCAAGCGCGCCTCATTTGCCCAATCACC
66 CATGCCATAGAAATCCCCAATCACGAGGGATATTAAGTCAAGCGCGCCTCATTTGCCCAATCACC
* *
692228 GGGGTCAAGCGCACGTTGCGACAATTATAATCCTTGATATTTTTTTAAACAAATTTTTATTACAT
131 GGGGTCAAGCACACATTGCGACAATTATAATCCTTGATATTTTTTTAAACAAATTTTTATTACAT
692293 TTTTTACTTATAAAAGTCAATATATGTTGCTTGTATTTTTCACTAACCCTTGTGTTTTCCTTGCA
196 TTTTTACTTATAAAAGTCAATATATGTTGCTTGTATTTTTCACTAACCCTTGTGTTTTCCTTGCA
*
692358 GCTTATTTTTAGGGAAATTTAGGATAGATTTTTTTATTTTTAGTCATAACAGTTAAGTTTGTTCC
261 GCTTATTTTTAGGGAAATTTAGGATAAATTTTTTTATTTTTAGTCATAACAGTTAAGTTTGTTCC
692423 CCGGCACACACTATGCATATGTATATGCATTAGTTTTTCTTTTTGATTTTCGAAGGGGCATAGAT
326 CCGGCACACACTATGCATATGTATATGCATTAGTTTTTCTTTTTGATTTTCGAAGGGGCATAGAT
692488 ACCTGATATTTTAAAAGAGGATGAAGTAGCTCTGCCCTCTGAGGCATTAGCCTCTATTTGGGCCA
391 ACCTGATATTTTAAAAGAGGATGAAGTAGCTCTGCCCTCTGAGGCATTAGCCTCTATTTGGGCCA
692553 A
456 A
692554 TGAA
1 TGAA
692558 AAGGCTATCA
Statistics
Matches: 456, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
456 456 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (456 bp):
TGAAGATCAATTAGATAGGCGATTCACCTACCGATCTTCCCCCCTTTAATCAACATACTTCCCAT
CATGCCATAGAAATCCCCAATCACGAGGGATATTAAGTCAAGCGCGCCTCATTTGCCCAATCACC
GGGGTCAAGCACACATTGCGACAATTATAATCCTTGATATTTTTTTAAACAAATTTTTATTACAT
TTTTTACTTATAAAAGTCAATATATGTTGCTTGTATTTTTCACTAACCCTTGTGTTTTCCTTGCA
GCTTATTTTTAGGGAAATTTAGGATAAATTTTTTTATTTTTAGTCATAACAGTTAAGTTTGTTCC
CCGGCACACACTATGCATATGTATATGCATTAGTTTTTCTTTTTGATTTTCGAAGGGGCATAGAT
ACCTGATATTTTAAAAGAGGATGAAGTAGCTCTGCCCTCTGAGGCATTAGCCTCTATTTGGGCCA
A
Found at i:695007 original size:15 final size:14
Alignment explanation
Indices: 694988--695044 Score: 51
Period size: 17 Copynumber: 3.6 Consensus size: 14
694978 AAACAAACAA
694988 AAAAAAAAGAAAGATG
1 AAAAAAAA-AAA-ATG
695004 AAAAAGAAAAAAATG
1 AAAAA-AAAAAAATG
*
695019 AAAAAAATCATGAAATG
1 AAAAAAA--A-AAAATG
695036 AAAAAAAAA
1 AAAAAAAAA
695045 GTGCAAATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 2 0.06
15 9 0.26
16 9 0.26
17 15 0.43
ACGTcount: A:0.77, C:0.02, G:0.12, T:0.09
Consensus pattern (14 bp):
AAAAAAAAAAAATG
Found at i:695022 original size:27 final size:27
Alignment explanation
Indices: 694992--695078 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 27
694982 AAACAAAAAA
694992 AAAAGAAAGATGAAAAAGAAAAAAATG
1 AAAAGAAAGATGAAAAAGAAAAAAATG
*
695019 AAAA-AAATCATGAAATGAA-AAAAAAAGTG
1 AAAAGAAA-GATGAAA--AAGAAAAAAA-TG
* *
695048 CAAATAGTAAGAT-AAAAAGAGAAAAATG
1 -AAA-AGAAAGATGAAAAAGAAAAAAATG
695076 AAA
1 AAA
695079 GAATATGAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 16
0.71 0.06 0.24
Matches are distributed among these distances:
26 3 0.06
27 13 0.27
28 11 0.23
29 10 0.21
30 6 0.12
31 3 0.06
32 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.11
Consensus pattern (27 bp):
AAAAGAAAGATGAAAAAGAAAAAAATG
Found at i:700996 original size:47 final size:46
Alignment explanation
Indices: 700877--701197 Score: 252
Period size: 47 Copynumber: 6.8 Consensus size: 46
700867 TTTTTACCCA
* * *
700877 CATTTGACTATATTGGCATTAAGACCTGGTCAAACTCAAATTT--ACTCT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACT----TTTCCACTCT
* * * * * *
700925 TATTTGACTGCATTGGCGTTAGGACCTAGTCAAACTCTTTCCACCCT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACT-TTTCCACTCT
* * * **
700972 CACTTGATTGTATTGGCGTTAGGACTTGGTCAAACTTAATTTTACTCT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACTT--TTCCACTCT
* * * * * *
701020 TATTTAACTATATTGGCATTAGGACCTGGTCAAACTTTTTCAACTTT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAAC-TTTTCCACTCT
* * * *
701067 CATTTGACTATATTGGCGTTAGGACCTGGTCAAACTTAAATT-TACTCT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACTT---TTCCACTCT
** *
701115 CATTTGATTGTATTGGCATTAGGACCTAATCAAACTATTTCCACTTT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACT-TTTCCACTCT
* *
701162 CGTTTGATTGTATTGGCATTAGGATCTGGTCAAACT
1 CATTTGATTGTATTGGCATTAGGACCTGGTCAAACT
701198 CTTTTCACCC
Statistics
Matches: 220, Mismatches: 43, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
45 3 0.01
46 5 0.02
47 108 0.49
48 99 0.45
49 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (46 bp):
CATTTGATTGTATTGGCATTAGGACCTGGTCAAACTTTTCCACTCT
Found at i:701002 original size:95 final size:95
Alignment explanation
Indices: 700833--701198 Score: 394
Period size: 95 Copynumber: 3.9 Consensus size: 95
700823 TCTTCTTTCG
* * * ** *
700833 TTTGGCTGTATTGGCATTA-G-CCATGGCCAAACTCTTTTTACCCACATTTGACTATATTGGCAT
1 TTTGACTGTATTGGCATTAGGACC-TAGTCAAACTCTTTCCACCCTCATTTGACTATATTGGCAT
*
700896 TAAGACCTGGTCAAACTCAAATTTACTCTTA
65 TAGGACCTGGTCAAACTCAAATTTACTCTTA
* * * * * *
700927 TTTGACTGCATTGGCGTTAGGACCTAGTCAAACTCTTTCCACCCTCACTTGATTGTATTGGCGTT
1 TTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACCCTCATTTGACTATATTGGCATT
* * *
700992 AGGACTTGGTCAAACTTAATTTTACTCTTA
66 AGGACCTGGTCAAACTCAAATTTACTCTTA
* * * * * ** *
701022 TTTAACTATATTGGCATTAGGACCTGGTCAAACTTTTTCAACTTTCATTTGACTATATTGGCGTT
1 TTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACCCTCATTTGACTATATTGGCATT
* *
701087 AGGACCTGGTCAAACTTAAATTTACTCTCA
66 AGGACCTGGTCAAACTCAAATTTACTCTTA
* * * ** * * *
701117 TTTGATTGTATTGGCATTAGGACCTAATCAAACTATTTCCACTTTCGTTTGATTGTATTGGCATT
1 TTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACCCTCATTTGACTATATTGGCATT
*
701182 AGGATCTGGTCAAACTC
66 AGGACCTGGTCAAACTC
701199 TTTTCACCCT
Statistics
Matches: 226, Mismatches: 44, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
94 16 0.07
95 208 0.92
96 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (95 bp):
TTTGACTGTATTGGCATTAGGACCTAGTCAAACTCTTTCCACCCTCATTTGACTATATTGGCATT
AGGACCTGGTCAAACTCAAATTTACTCTTA
Found at i:701521 original size:85 final size:85
Alignment explanation
Indices: 701376--701889 Score: 423
Period size: 85 Copynumber: 6.1 Consensus size: 85
701366 TCATCCCTTT
* * ** * * *
701376 TTTACCTGTCAGCTCAGTCCC-CGATAAACCTATTACCCCTATGGTGACCTATCATCTTAGTTTT
1 TTTACCTATCAGCTCAGTCCCTAG-TAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTTTT
* * *
701440 CGGTTAATCTTCATCTCTTTG
65 CGGTCAACCTTCATCTCATTG
* * * * * * * *
701461 TCTACCTGTCGGCTTAGTCCCTGGTATACCCCTTACACCTATGGTGACCTGTTAGCTTAG-TCTC
1 TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTTTTC
*
701525 TGGTCAACCTTCATCTGATTG
66 -GGTCAACCTTCATCTCATTG
* * * * * *
701546 TTTACCTATCAGCTCAGTCCCCAGTAAACCCCTTACACCTATGATGACCTGTCAGCTCAATCTCC
1 TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTTTTC
*
701611 GGTCAACCTTCATCTGATTG
66 GGTCAACCTTCATCTCATTG
* * * * *
701631 TTTACCTATCATCTCAGTCCCCAGTAAACCCCTTACACCTATGATGACCTGTCAG-TTCA-ATCT
1 TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTT-AGTTTT
*
701694 CGGTTAACCTTCATCTCATTG
65 CGGTCAACCTTCATCTCATTG
* * * * * ** *
701715 TTTACCTGTCAACTTAGTCCCTAATAAACACCTTATTCCT-TCGGTGACCTGTC-GACTTAGTCT
1 TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACACCTAT-GGTGACCTGTCAG-CTTAGTTT
*
701778 TCGGTCAACCCTTCATC-CCTTG
64 TCGGTCAA-CCTTCATCTCATTG
* * * * * * * * * *
701800 TTTACCTATCGGCTCAATCCCTGGTAAACCCCTTAC-CTTTTTGGTGACTTGTCAACTTACTCTC
1 TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACAC-CTATGGTGACCTGTCAGCTTAGTTTT
* * *
701864 CGGTCAACCTCCATCTTAGTG
65 CGGTCAACCTTCATCTCATTG
701885 TTTAC
1 TTTAC
701890 TTGCTAGCTT
Statistics
Matches: 346, Mismatches: 70, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
83 2 0.01
84 74 0.21
85 259 0.75
86 11 0.03
ACGTcount: A:0.20, C:0.31, G:0.14, T:0.35
Consensus pattern (85 bp):
TTTACCTATCAGCTCAGTCCCTAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTTTTC
GGTCAACCTTCATCTCATTG
Found at i:701681 original size:170 final size:169
Alignment explanation
Indices: 701376--701835 Score: 498
Period size: 170 Copynumber: 2.7 Consensus size: 169
701366 TCATCCCTTT
** * * * *
701376 TTTACCTGTCAGCTCAGTCCCC-GATAAACCTATTACCCCTATGGTGACCTATCATCTTAGTTTT
1 TTTACCTGTCAGCTCAGTCCCCAG-TAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTCTT
* * * * * * * *
701440 CGGTTAATCTTCATCTCTTTGTCTACCTGTCGGCTTAGTCCCTGGTATACCCCTTACACCTATGG
65 CGGTCAACCTTCATCTCATTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCCTTACACCTATGA
* * *
701505 TGACCTGTTAGCTT-AGTCTCTGGTCAACCTTCATCTGATTG
130 TGACCTGTCAG-TTCAATCTC-GGTCAACCTTCATCTCATTG
* * * * *
701546 TTTACCTATCAGCTCAGTCCCCAGTAAACCCCTTACACCTATGATGACCTGTCAGCTCAATCTCC
1 TTTACCTGTCAGCTCAGTCCCCAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTCTTC
* ** **
701611 GGTCAACCTTCATCTGATTGTTTACCTATCATCTCAGTCCCCAGTAAACCCCTTACACCTATGAT
66 GGTCAACCTTCATCTCATTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCCTTACACCTATGAT
*
701676 GACCTGTCAGTTCAATCTCGGTTAACCTTCATCTCATTG
131 GACCTGTCAGTTCAATCTCGGTCAACCTTCATCTCATTG
* * * * * **
701715 TTTACCTGTCAACTTAGTCCCTAATAAACACCTTATTCCT-TCGGTGACCTGTC-GACTTAGTCT
1 TTTACCTGTCAGCTCAGTCCCCAGTAAACCCCTTACACCTAT-GGTGACCTGTCAG-CTTAGTCT
* *
701778 TCGGTCAACCCTTCATC-CCTTGTTTACCTATCGGCTCAATCCCTGGTAAACCCCTTAC
64 TCGGTCAA-CCTTCATCTCATTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCCTTAC
701836 CTTTTTGGTG
Statistics
Matches: 238, Mismatches: 47, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
168 2 0.01
169 109 0.46
170 126 0.53
171 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (169 bp):
TTTACCTGTCAGCTCAGTCCCCAGTAAACCCCTTACACCTATGGTGACCTGTCAGCTTAGTCTTC
GGTCAACCTTCATCTCATTGTTTACCTATCGGCTCAGTCCCTGGTAAACCCCTTACACCTATGAT
GACCTGTCAGTTCAATCTCGGTCAACCTTCATCTCATTG
Found at i:701785 original size:169 final size:170
Alignment explanation
Indices: 701488--701889 Score: 411
Period size: 169 Copynumber: 2.4 Consensus size: 170
701478 TCCCTGGTAT
* * * *
701488 ACCCCTTACACCTATGGTGACCTGTTAGCTTAGTCTCTGGTCAACCTTCATCTGATTGTTTACCT
1 ACCCCTTACACCTATGATGACCTGTCAGCTTAATCTCTGGTCAACCTTCATCTCATTGTTTACCT
* * *
701553 ATCAGCTCAGTCCCCAGTAAACCCCTTACACCTATGATGACCTGTCAGCTCAATCTCCGGTCAA-
66 ATCAACTCAGTCCCCAATAAACACCTTACACCTATGATGACCTGTCAGCTCAATCTCCGGTCAAC
* * *
701617 CCTTCATCTGATTGTTTACCTATCATCTCAGTCCCCAGTAA
131 CCTTCATC-CATTGTTTACCTATCAGCTCAATCCCCAGTAA
*
701658 ACCCCTTACACCTATGATGACCTGTCAG-TTCAATCTC-GGTTAACCTTCATCTCATTGTTTACC
1 ACCCCTTACACCTATGATGACCTGTCAGCTT-AATCTCTGGTCAACCTTCATCTCATTGTTTACC
* * * ** * * * *
701721 TGTCAACTTAGTCCCTAATAAACACCTTATTCCT-TCGGTGACCTGTC-GACTTAGTCTTCGGTC
65 TATCAACTCAGTCCCCAATAAACACCTTACACCTAT-GATGACCTGTCAG-CTCAATCTCCGGTC
* * **
701784 AACCCTTCATCCCTTGTTTACCTATCGGCTCAATCCCTGGTAA
128 AACCCTTCATCCATTGTTTACCTATCAGCTCAATCCCCAGTAA
* * * * * * * * * *
701827 ACCCCTTAC-CTTTTTGGTGACTTGTCAACTTACTCTCCGGTCAACCTCCATCTTAGTGTTTAC
1 ACCCCTTACAC-CTATGATGACCTGTCAGCTTAATCTCTGGTCAACCTTCATCTCATTGTTTAC
701890 TTGCTAGCTT
Statistics
Matches: 191, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
168 3 0.02
169 126 0.66
170 62 0.32
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (170 bp):
ACCCCTTACACCTATGATGACCTGTCAGCTTAATCTCTGGTCAACCTTCATCTCATTGTTTACCT
ATCAACTCAGTCCCCAATAAACACCTTACACCTATGATGACCTGTCAGCTCAATCTCCGGTCAAC
CCTTCATCCATTGTTTACCTATCAGCTCAATCCCCAGTAA
Found at i:703276 original size:152 final size:155
Alignment explanation
Indices: 703046--703492 Score: 487
Period size: 152 Copynumber: 2.8 Consensus size: 155
703036 TTCCTTTTAT
* * * * ** ** *
703046 TTTCAAATTACGAGGTTTTCTTCTCCGTAAAATTTTTGG-GGAGGA-TTTTCATGGGTTTAAAAG
1 TTTCAAAATACGAAGTTTTCTACTCCGT-AAATTTTCGGAGG-GGATTTTTC-TTAGTTTTTAAT
* * **
703109 TTTAAAAATTTATCAAATATTATTATTTAATTCATATTAAATTGGTTTTCAAAAATTCATTCATT
63 TTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTT-AAAAATTCATTCATT
* *
703174 TTCTTGAGTTTTTCA-TTTCC-CTA-TT-
127 TTCCTGAGTTTTTCATTTTCCTATATTTG
* *
703199 TTT-AAAATACGGAGTTTTCTACTTCGTAAATATTTTCGGA-GGGATTTTTCTTAGTTTTTAATT
1 TTTCAAAATACGAAGTTTTCTACTCCGT-AA-ATTTTCGGAGGGGATTTTTCTTAGTTTTTAATT
*
703262 TTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTGTAGAAATTCATTCATTT
64 TTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTT-TAAAAATTCATTCATTT
*
703327 TCCTGAGTTTTTGATTTTTCCTTGATATTTTCTTG
128 TCCTGAGTTTTTCA-TTTTCC-T-ATA---T-TTG
* * *
703362 TTTCCAAAATACGAAGTTTTCTACTCCGTTAATTTTGGGAGGGGATTTTTCTTGGTTTTTAATTT
1 TTT-CAAAATACGAAGTTTTCTACTCCGTAAATTTTCGGAGGGGATTTTTCTTAGTTTTTAATTT
*
703427 TTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTTAAAAATTCATTCATTTT
65 TTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAG-TTTTAAAAATTCATTCATTTT
703492 C
129 C
703493 ATTCATTTTT
Statistics
Matches: 249, Mismatches: 26, Indels: 27
0.82 0.09 0.09
Matches are distributed among these distances:
152 103 0.41
153 17 0.07
154 5 0.02
157 2 0.01
162 2 0.01
163 11 0.04
164 84 0.34
165 25 0.10
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (155 bp):
TTTCAAAATACGAAGTTTTCTACTCCGTAAATTTTCGGAGGGGATTTTTCTTAGTTTTTAATTTT
TAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTTAAAAATTCATTCATTTTCC
TGAGTTTTTCATTTTCCTATATTTG
Found at i:703385 original size:165 final size:166
Alignment explanation
Indices: 703190--703579 Score: 492
Period size: 164 Copynumber: 2.4 Consensus size: 166
703180 AGTTTTTCAT
*
703190 TTCCCTATTTT-T-AAAATACGGAGTTTTCTACTTCGTAAATATTTTCGGAGGGATTTTTCTTAG
1 TTCCCT-TTTTCTCAAAATACGAAGTTTTCTACTTCGTAAATATTTTCGGAGGGATTTTTCTTAG
*
703253 TTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTGTAGAAATT
65 TTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTGTAAAAATT
* *
703318 CATTCATTTTC-CTGAGTTTTTGA-TTTTTCCTTGATA
130 CATTCATTTTCACTCA-TTTTTGATTTTTTCCTTGAAA
** * * * *
703354 TTTTCTTGTTTC-CAAAATACGAAGTTTTCTACTCCGT-TA-ATTTTGGGAGGGGATTTTTCTTG
1 TTCCCTT-TTTCTCAAAATACGAAGTTTTCTACTTCGTAAATATTTTCGGA-GGGATTTTTCTTA
* *
703416 GTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAGTTTTTAAAAAT
64 GTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTGTAAAAAT
* * *
703481 TCATTCATTTTCATTCATTTTTTATTTTTTTCTTGAAA
129 TCATTCATTTTCACTCATTTTTGATTTTTTCCTTGAAA
* * * *
703519 TTCCCTTTTTCTCAAAAAACCTAA-TTTTCTA-TTCCATAAATATTTTCGGAGAGATTTTTCT
1 TTCCCTTTTTCTCAAAATA-CGAAGTTTTCTACTT-CGTAAATATTTTCGGAGGGATTTTTCT
703580 CGACTTAAAA
Statistics
Matches: 191, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
163 9 0.05
164 105 0.55
165 55 0.29
166 14 0.07
167 8 0.04
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.51
Consensus pattern (166 bp):
TTCCCTTTTTCTCAAAATACGAAGTTTTCTACTTCGTAAATATTTTCGGAGGGATTTTTCTTAGT
TTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTCATATTAAATCAGTTTGTAAAAATTC
ATTCATTTTCACTCATTTTTGATTTTTTCCTTGAAA
Found at i:705986 original size:154 final size:154
Alignment explanation
Indices: 705705--706084 Score: 413
Period size: 154 Copynumber: 2.4 Consensus size: 154
705695 TTTCTCACAC
* ** * * *
705705 TTTTAAATCCTTTCAGGGTATCGGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCA-TTTCTAT
1 TTTTAAGTCCTTT-AGGGTATTAGGTACTTTTATGTCAAAGGTATCCTCTAGGGGCATTTTC-AT
* * * * * * * *
705769 AATTTCTCAAGAACCGAGTCCTAGGTTGTCATCGGGTCTGCTTTTATGCTGAAGGTGGGTATTTA
64 AATTT-TCAAGAACCAACTCCTAGGTCGTCACCAGGTCCGCTTTTATGCTGAAGGTAGATATTTA
* *
705834 GGGTAGGTTCATCCCTTTTAAAGTCTT
128 GGATAGGTTCATCCCTTTTAAAATCTT
*
705861 TTTTAAGTCCTTTAGGGGTATTAGGTAC-TTTATGTCAAAGGTATCCTTTAGGGGCATTTTCATA
1 TTTTAAGTCCTTTA-GGGTATTAGGTACTTTTATGTCAAAGGTATCCTCTAGGGGCATTTTCATA
* * *
705925 ATTTTCTAGAACCAACTCTTAGGTCGTCACCAGGTCCGCTTTTATGCTGAAGGTATATATTTAGG
65 ATTTTCAAGAACCAACTCCTAGGTCGTCACCAGGTCCGCTTTTATGCTGAAGGTAGATATTTAGG
*
705990 ATAGGTTTATCCCTTTTAAAATCTT
130 ATAGGTTCATCCCTTTTAAAATCTT
* ** * * * * * ** *
706015 CTTCGAGCCCTTTTAGGTTACTAGGTACTTTTATGTCAAAAGCATCCTCTAAAGGCATTTTCGTA
1 TTTTAAGTCC-TTTAGGGTATTAGGTACTTTTATGTCAAAGGTATCCTCTAGGGGCATTTTCATA
706080 ATTTT
65 ATTTT
706085 TCTTAAACTT
Statistics
Matches: 187, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
154 89 0.48
155 71 0.38
156 27 0.14
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (154 bp):
TTTTAAGTCCTTTAGGGTATTAGGTACTTTTATGTCAAAGGTATCCTCTAGGGGCATTTTCATAA
TTTTCAAGAACCAACTCCTAGGTCGTCACCAGGTCCGCTTTTATGCTGAAGGTAGATATTTAGGA
TAGGTTCATCCCTTTTAAAATCTT
Found at i:711257 original size:16 final size:16
Alignment explanation
Indices: 711211--711258 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
711201 CCGAAATTCT
711211 TTTTAAA-AAAATTAA
1 TTTTAAATAAAATTAA
* *
711226 TTATTTAAT-AATTTAA
1 TT-TTAAATAAAATTAA
711242 TTTTAAATAAAATTAA
1 TTTTAAATAAAATTAA
711258 T
1 T
711259 AGAATTAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAATAAAATTAA
Found at i:713158 original size:22 final size:21
Alignment explanation
Indices: 713101--713160 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
713091 TCCTGGATGC
*
713101 AAATAATTAAAAAATATTTTA
1 AAATAATTAAAAATTATTTTA
* * * *
713122 TATTAAATCATAAATTATTTTAA
1 AAAT-AATTAAAAATTATTTT-A
713145 AAATAATTAAAAATTA
1 AAATAATTAAAAATTA
713161 AAAAAATTTA
Statistics
Matches: 28, Mismatches: 9, Indels: 3
0.70 0.22 0.08
Matches are distributed among these distances:
21 2 0.07
22 23 0.82
23 3 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATAATTAAAAATTATTTTA
Found at i:713214 original size:49 final size:50
Alignment explanation
Indices: 713105--713229 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 50
713095 GGATGCAAAT
*
713105 AATTAAAAAATATTTTATATTAAATCATAAATTATTTTAAAAATAATTAAA
1 AATTAAAAAACATTTTATATTAAATCATAAATTATTTTAAAAATAA-TAAA
* *
713156 AATTAAAAAA-A-TTTATATTAAATCTTGAATTACTATTTAAAAAT-A-AAA
1 AATTAAAAAACATTTTATATTAAATCATAAATTA-T-TTTAAAAATAATAAA
*
713204 AATTAGAAAAACATTTTCTATTAAAT
1 AATTA-AAAAACATTTTATATTAAAT
713230 TTTATATTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
48 8 0.12
49 24 0.36
50 4 0.06
51 30 0.45
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (50 bp):
AATTAAAAAACATTTTATATTAAATCATAAATTATTTTAAAAATAATAAA
Found at i:713504 original size:24 final size:23
Alignment explanation
Indices: 713443--713506 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
713433 TAAATTTAAA
*
713443 ATATATATA-TCAA-ATA-ATAT
1 ATATATATATTAAACATATATAT
* *
713463 ATATATATA-TATATATATATAT
1 ATATATATATTAAACATATATAT
713485 ATATATATATTGAAACATATAT
1 ATATATATATT-AAACATATAT
713507 TTGACATATG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.31
21 3 0.08
22 13 0.36
23 1 0.03
24 8 0.22
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (23 bp):
ATATATATATTAAACATATATAT
Found at i:713506 original size:2 final size:2
Alignment explanation
Indices: 713443--713494 Score: 79
Period size: 2 Copynumber: 26.0 Consensus size: 2
713433 TAAATTTAAA
*
713443 AT AT AT AT AT CAA AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
713485 AT AT AT AT AT
1 AT AT AT AT AT
713495 TGAAACATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 44 0.96
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:713897 original size:7 final size:7
Alignment explanation
Indices: 713885--713912 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
713875 AATACTATTT
713885 AAAAATA
1 AAAAATA
713892 AAAAATA
1 AAAAATA
713899 AAAAATA
1 AAAAATA
713906 AAAAATA
1 AAAAATA
713913 TTTTATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:714304 original size:51 final size:51
Alignment explanation
Indices: 714155--714308 Score: 206
Period size: 52 Copynumber: 3.0 Consensus size: 51
714145 TATTAATAAT
714155 ACTATTTAAAAATAATAAAAAATTAAAAAATATTTTATATTAAAT-CTCAAATA
1 ACTATTT-AAAATAAT-AAAAATT-AAAAATATTTTATATTAAATCCTCAAATA
*
714208 ACTATTTAAAATAATAAAAATTTTAAAAATATTTTATATTAAATCCT-AAATT
1 ACTATTTAAAATAATAAAAA--TTAAAAATATTTTATATTAAATCCTCAAATA
* *
714260 ATTATTTAAGAATAATAAAAACTAAAAATATTTTATATTAAATCC-CAAA
1 ACTATTTAA-AATAATAAAAATTAAAAATATTTTATATTAAATCCTCAAA
714309 ATTACAATTT
Statistics
Matches: 93, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
51 31 0.33
52 40 0.43
53 22 0.24
ACGTcount: A:0.55, C:0.06, G:0.01, T:0.38
Consensus pattern (51 bp):
ACTATTTAAAATAATAAAAATTAAAAATATTTTATATTAAATCCTCAAATA
Found at i:714708 original size:22 final size:22
Alignment explanation
Indices: 714683--714724 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
714673 TACATACTGC
714683 TATAGTCATATATATATTCAGT
1 TATAGTCATATATATATTCAGT
* *
714705 TATAGTCATTTGTATATTCA
1 TATAGTCATATATATATTCA
714725 ATTTTGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (22 bp):
TATAGTCATATATATATTCAGT
Found at i:715058 original size:13 final size:14
Alignment explanation
Indices: 715040--715068 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
715030 TATGCTTTGT
715040 ATCGATACAT-TTC
1 ATCGATACATGTTC
715053 ATCGATACATGTTC
1 ATCGATACATGTTC
715067 AT
1 AT
715069 TGTATTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (14 bp):
ATCGATACATGTTC
Found at i:715078 original size:19 final size:20
Alignment explanation
Indices: 715053--715102 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
715043 GATACATTTC
* *
715053 ATCGATACATG-TTCATTGT
1 ATCGATACATGCATAATTGT
*
715072 ATTGATACATGCATAATTGT
1 ATCGATACATGCATAATTGT
715092 ATCGATACATG
1 ATCGATACATG
715103 AAACTGGCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (20 bp):
ATCGATACATGCATAATTGT
Found at i:722831 original size:33 final size:28
Alignment explanation
Indices: 722758--722827 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
722748 ATCCGAGAGT
722758 TGATCACTTCACTTTCGCAGCACATGAA
1 TGATCACTTCACTTTCGCAGCACATGAA
722786 TGATCACTTCACTTTCGCAGCACATGAA
1 TGATCACTTCACTTTCGCAGCACATGAA
722814 TGATCACTTCACTT
1 TGATCACTTCACTT
722828 CACTCTCGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (28 bp):
TGATCACTTCACTTTCGCAGCACATGAA
Found at i:722837 original size:33 final size:32
Alignment explanation
Indices: 722761--722844 Score: 113
Period size: 28 Copynumber: 2.7 Consensus size: 32
722751 CGAGAGTTGA
722761 TCACTTCACTTTCGCAGCACATGAATGATCACT
1 TCACTTCAC-TTCGCAGCACATGAATGATCACT
722794 TCAC-T---TTCGCAGCACATGAATGATCACT
1 TCACTTCACTTCGCAGCACATGAATGATCACT
*
722822 TCACTTCACTCTCGCAGCGCATG
1 TCACTTCACT-TCGCAGCACATG
722845 GATAAGCACT
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
28 27 0.60
29 1 0.02
32 2 0.04
33 15 0.33
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (32 bp):
TCACTTCACTTCGCAGCACATGAATGATCACT
Found at i:722855 original size:33 final size:33
Alignment explanation
Indices: 722761--722855 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 33
722751 CGAGAGTTGA
*
722761 TCACTTCACTTTCGCAGCACATGAAT--G-A--
1 TCACTTCACTCTCGCAGCACATGAATAAGCACT
* * *
722789 TCACTTCACTTTCGCAGCACATGAATGATCACT
1 TCACTTCACTCTCGCAGCACATGAATAAGCACT
* *
722822 TCACTTCACTCTCGCAGCGCATGGATAAGCACT
1 TCACTTCACTCTCGCAGCACATGAATAAGCACT
722855 T
1 T
722856 TAGTGCACTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.46
31 1 0.02
33 29 0.52
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (33 bp):
TCACTTCACTCTCGCAGCACATGAATAAGCACT
Found at i:726046 original size:9 final size:9
Alignment explanation
Indices: 726032--726062 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
726022 AAATGACTTC
726032 AAATCATCA
1 AAATCATCA
726041 AAATCATCA
1 AAATCATCA
726050 AAATCATCA
1 AAATCATCA
726059 AAAT
1 AAAT
726063 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATCATCA
Found at i:726944 original size:33 final size:33
Alignment explanation
Indices: 726899--726964 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
726889 AAATTCCAAG
*
726899 ATGTATCGATACAAAGA-TCAATGTATCGATACA
1 ATGTATCCATACAAAGAGT-AATGTATCGATACA
**
726932 ATGTATCCATACATTGAGTAATGTATCGATACA
1 ATGTATCCATACAAAGAGTAATGTATCGATACA
726965 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCCATACAAAGAGTAATGTATCGATACA
Found at i:727337 original size:19 final size:20
Alignment explanation
Indices: 727313--727367 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
727303 GTATCGATAT
* * *
727313 ATTGTATTGATACATG-TTC
1 ATTGTATCGATACATGCATA
*
727332 ATTGTATCGATGCATGCATA
1 ATTGTATCGATACATGCATA
727352 ATTGTATCGATACATG
1 ATTGTATCGATACATG
727368 AAACTGGCAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (20 bp):
ATTGTATCGATACATGCATA
Found at i:727435 original size:13 final size:13
Alignment explanation
Indices: 727417--727441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
727407 CATGGCATAT
727417 TGTATTGATACAA
1 TGTATTGATACAA
727430 TGTATTGATACA
1 TGTATTGATACA
727442 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (13 bp):
TGTATTGATACAA
Found at i:728398 original size:56 final size:55
Alignment explanation
Indices: 728322--728427 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 55
728312 TATTATCTTA
* * * *
728322 AAAACATATTTTATATTAAATCCTAGATTTACAATTTTAAAAATAATAAAAAATTTT
1 AAAACATATTTTATAATAAAT-CAAAAATTACAA-TTTAAAAATAATAAAAAATTTT
*
728379 AAAA-ATATTTTATAATAAATCAAAAATTACTATTTAAAAATAATAAAAA
1 AAAACATATTTTATAATAAATCAAAAATTACAATTTAAAAATAATAAAAA
728428 TTAAAAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 17 0.39
55 8 0.18
56 15 0.34
57 4 0.09
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.37
Consensus pattern (55 bp):
AAAACATATTTTATAATAAATCAAAAATTACAATTTAAAAATAATAAAAAATTTT
Found at i:728612 original size:22 final size:22
Alignment explanation
Indices: 728582--728639 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
728572 AAATAAAATT
* *
728582 GAATTTACATATGACTATAACTA
1 GAATGTACATATGACAATAAC-A
*
728605 -AATGTACATAAGACAATAACA
1 GAATGTACATATGACAATAACA
*
728626 GTATGTACATATGA
1 GAATGTACATATGA
728640 TTTTAATTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (22 bp):
GAATGTACATATGACAATAACA
Found at i:728829 original size:52 final size:52
Alignment explanation
Indices: 728725--728919 Score: 243
Period size: 52 Copynumber: 3.7 Consensus size: 52
728715 TCCAATATAC
* * *
728725 ATAAAATATTTATTAATTTTTTATTATTTTTTAAAAAATAATTTGAGGTTTAAT
1 ATAAAATATTT-TTAAATTTTTATTA-TTTTTAAATAGTAATTTGAGGTTTAAT
* * * *
728779 A-AATATATTTTTAAAATTTTTATTATTTTTAAATAGTTATTCGAGATTTAAT
1 ATAAAATATTTTT-AAATTTTTATTATTTTTAAATAGTAATTTGAGGTTTAAT
*
728831 ATAAAATA-TTTTAAATTTTTTATTAATTTTAAATAGTAATTTGAGGTTTAAT
1 ATAAAATATTTTTAAA-TTTTTATTATTTTTAAATAGTAATTTGAGGTTTAAT
*
728883 ATAAAATATTTTT-AATCTTTTATTATTTTGAAATAGT
1 ATAAAATATTTTTAAAT-TTTTATTATTTTTAAATAGT
728920 TTTTTAATGT
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
51 4 0.03
52 89 0.73
53 28 0.23
54 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.53
Consensus pattern (52 bp):
ATAAAATATTTTTAAATTTTTATTATTTTTAAATAGTAATTTGAGGTTTAAT
Found at i:728907 original size:104 final size:105
Alignment explanation
Indices: 728725--728920 Score: 290
Period size: 104 Copynumber: 1.9 Consensus size: 105
728715 TCCAATATAC
* * *
728725 ATAAAATATTTATTAATTTTTTATTATTTTTTAAAAAATAATTTGAGGTTTAATAAATATATTTT
1 ATAAAATATTTATAAATTTTTTATTATATTTTAAAAAATAATTTGAGGTTTAATAAAAATATTTT
*
728790 TAAAATTTTTATTATTTTTAAATAGTTATTCGAGATTTAAT
66 T-AAATTTTTATTATTTTGAAATAGTTATTCGAGATTTAAT
* *
728831 ATAAAATATTT-TAAATTTTTTATTA-ATTTTAAATAGTAATTTGAGGTTTAATATAAAATATTT
1 ATAAAATATTTATAAATTTTTTATTATATTTTAAAAAATAATTTGAGGTTTAATA-AAAATATTT
728894 TT-AATCTTTTATTATTTTGAAATAGTT
65 TTAAAT-TTTTATTATTTTGAAATAGTT
728921 TTTTAATGTA
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
103 3 0.04
104 45 0.55
105 23 0.28
106 11 0.13
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (105 bp):
ATAAAATATTTATAAATTTTTTATTATATTTTAAAAAATAATTTGAGGTTTAATAAAAATATTTT
TAAATTTTTATTATTTTGAAATAGTTATTCGAGATTTAAT
Found at i:729046 original size:18 final size:18
Alignment explanation
Indices: 729023--729057 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
729013 ATATGTTCCC
*
729023 ATATATATTTATTATTTG
1 ATATATATTCATTATTTG
729041 ATATATATTCATTATTT
1 ATATATATTCATTATTT
729058 TTTAAATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
ATATATATTCATTATTTG
Found at i:733250 original size:33 final size:32
Alignment explanation
Indices: 733208--733275 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
733198 TCACTGTTTG
733208 TATCGATACAT-AGCATATTGTATCGATACATTA
1 TATCGATACATAAG-A-ATTGTATCGATACATTA
733241 TATCGATACATGAAGAATTGTATCGATACATTA
1 TATCGATACAT-AAGAATTGTATCGATACATTA
733274 TA
1 TA
733276 CGCAATAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.91
34 1 0.03
35 2 0.06
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (32 bp):
TATCGATACATAAGAATTGTATCGATACATTA
Found at i:733391 original size:104 final size:105
Alignment explanation
Indices: 733206--733424 Score: 350
Period size: 104 Copynumber: 2.1 Consensus size: 105
733196 TATCACTGTT
* *
733206 TGTATCGATACATAGCATATTGTATCGATACATTATATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATAGCATATTGTATCAATACACTATATCGATACATGAAGAATTGTATCGATACA
* *
733271 TTATACGCAATAGCTATAAACGGCTTTAATTTCAAATGCA
66 TTATACCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
* *
733311 TGTATCGATACATGGCATATTG-ATCAATACACTGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATAGCATATTGTATCAATACACTATATCGATACATGAAGAATTGTATCGATACA
* * *
733375 TTATGCCCAACGGCTATAAACGGCTTTAATTTTAAATGCA
66 TTATACCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
733415 TGTATCGATA
1 TGTATCGATA
733425 TATTTCATAA
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
104 84 0.80
105 21 0.20
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (105 bp):
TGTATCGATACATAGCATATTGTATCAATACACTATATCGATACATGAAGAATTGTATCGATACA
TTATACCCAACAGCTATAAACGGCTTTAATTTCAAATGCA
Found at i:739521 original size:28 final size:28
Alignment explanation
Indices: 739487--740334 Score: 807
Period size: 28 Copynumber: 29.5 Consensus size: 28
739477 CATTCATCTC
* *
739487 TTCAAAGCCTACAGGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
739515 TTCAAAGCCCACAAGTTAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
739543 TCTCAAAGCCCACAAGTCAGTGGCAT-CT
1 T-TCAAAGCCCACAAGTCAGTGGCATCCT
*
739571 TTCCAAAGCCCACAAGTTAGTGGCATCCT
1 TT-CAAAGCCCACAAGTCAGTGGCATCCT
*
739600 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
739628 TTTAAAGCCCACAAGTCAGTGGCACCCGT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
*
739657 TTCAAAGCCCACAAGTTAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
739684 TTCCAAAGCCCATAAGT-AGTGGCATCTT
1 TT-CAAAGCCCACAAGTCAGTGGCATCCT
* *
739712 TTTAAAGCCCATAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
739739 TTCCAAAGTCCAAAAGTCAGTGGCATCCT
1 TT-CAAAGCCCACAAGTCAGTGGCATCCT
*
739768 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
739796 TTCAAAGCCCACACGTTAGTAGCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* * *
739825 TTCAAAGCCCACAAGCCAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCCT
* *
739855 TTCAAAGCCCATAAGTCAGTAGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
739883 TTCAAAGCCAACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
739911 TTCAAAGCCCATAAGTTAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
739939 TTCAAAGCCTACAAGTCAGTGGCA-CACTT
1 TTCAAAGCCCACAAGTCAGTGGCATC-C-T
* * * * *
739968 TTCAAAGCCCAAAAGCCAATGGTTACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCCT
* * *
739998 TTTAAAGCCCACAAGTCAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCCT
* * * * *
740028 TTCAAAATCCACACAGGTCGGTGGTAACTCT
1 TTC-AAAGCC-CACAAGTCAGTGGCATC-CT
* *
740059 TCTCAAAGCCCACACAAATCGGTGGCA-CCT
1 T-TCAAAG-CC-CACAAGTCAGTGGCATCCT
* * *
740089 TTCCAAAGCCTACAAGTTAGTGGCATCTT
1 TT-CAAAGCCCACAAGTCAGTGGCATCCT
* *
740118 TTCAAAGCTCACAACTCAGTGGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGCAT-CC-T
*
740148 TTCAAAGCCCACAAGTCGGTGGCA-CTCT
1 TTCAAAGCCCACAAGTCAGTGGCATC-CT
*
740176 TCCAAAGCCCACAAGTCAGTGGCA-CCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
*
740204 TTCAAAGCCCACAAGTTAGTGGCATACCCT
1 TTCAAAGCCCACAAGTCAGTGGCAT--CCT
*
740234 TTCAAAGCCCACAAGTC-GATGGCACCCT
1 TTCAAAGCCCACAAGTCAG-TGGCATCCT
**
740262 TTCAAAGCCCACAAGTTGGTGGCA-CTCT
1 TTCAAAGCCCACAAGTCAGTGGCATC-CT
* *
740290 TTCAAAGCCCACACAAGTCGGTGGCAAGTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-A-TCCT
740322 TTCAAAGCCCACA
1 TTCAAAGCCCACA
740335 CAAGTTAGTG
Statistics
Matches: 688, Mismatches: 93, Indels: 76
0.80 0.11 0.09
Matches are distributed among these distances:
27 31 0.05
28 376 0.55
29 105 0.15
30 120 0.17
31 18 0.03
32 37 0.05
33 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:740057 original size:32 final size:32
Alignment explanation
Indices: 740007--740083 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
739997 TTTTAAAGCC
* * *
740007 CACAAGTCAGTGGTAACTCTTTTCAAAATCCA
1 CACAAGTCGGTGGTAACTCTTCTCAAAACCCA
* *
740039 CACAGGTCGGTGGTAACTCTTCTCAAAGCCCA
1 CACAAGTCGGTGGTAACTCTTCTCAAAACCCA
*
740071 CACAAATCGGTGG
1 CACAAGTCGGTGG
740084 CACCTTTCCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (32 bp):
CACAAGTCGGTGGTAACTCTTCTCAAAACCCA
Found at i:740179 original size:86 final size:87
Alignment explanation
Indices: 739487--740334 Score: 829
Period size: 86 Copynumber: 9.8 Consensus size: 87
739477 CATTCATCTC
* * * * * *
739487 TTCAAAGCCTACAGGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGCAT-CCTTCTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
739551 CCCACAAGTCAGTGGCA-TCTT
66 CCCACAAGTCAGTGGCACTCTT
* * * *
739572 TCCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTT-AAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
* *
739635 CCCACAAGTCAGTGGCACCCGT
66 CCCACAAGTCAGTGGCACTCTT
* * * *
739657 TTCAAAGCCCACAAGTTAGTGGCATCTTTCCAAAGCCCATAAGT-AGTGGCAT--CTTTTTAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
*
739719 CCCATAAGTCAGTGGCA-TCTT
66 CCCACAAGTCAGTGGCACTCTT
* * * * *
739740 TCCAAAGTCCAAAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCAT-CC-TTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
* * * *
739803 CCCACACGTTAGTAGCACCCTT
66 CCCACAAGTCAGTGGCACTCTT
* * * *
739825 TTCAAAGCCCACAAGCCAGTGGTAACTCTTTTCAAAGCCCATAAGTCAGTAGCAT-CC-TTTCAA
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAA
* *
739888 AGCCAACAAGTCAGTGGCA-TCCT
64 AGCCCACAAGTCAGTGGCACTCTT
* * * *
739911 TTCAAAGCCCATAAGTTAGTGGCATCTTTTCAAAGCCTACAAGTCAGTGGCACA-CTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
* * * *
739975 CCCAAAAGCCAATGGTTACTCTT
66 CCCACAAGTCAGTGG-CACTCTT
* * * * * * *
739998 TTTAAAGCCCACAAGTCAGTGGTAACTCTTTTCAAAATCCACACAGGTCGGTGGTA-ACTCTTCT
1 TTCAAAGCCCACAAGTCAGTGG-CA-TCTTTTC-AAAGCC-CACAAGTCAGTGGCATAC-CTTTT
* *
740062 CAAAGCCCACACAAATCGGTGGCAC-CTT
61 CAAAG-CC-CACAAGTCAGTGGCACTCTT
* * * * *
740090 TCCAAAGCCTACAAGTTAGTGGCATCTTTTCAAAGCTCACAACTCAGTGGCATACCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
*
740155 CCCACAAGTCGGTGGCACTC-T
66 CCCACAAGTCAGTGGCACTCTT
* * * * *
740176 TCCAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTGGCATACCCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
*
740241 CCCACAAGTC-GATGGCAC-CCT
66 CCCACAAGTCAG-TGGCACTCTT
** * *
740262 TTCAAAGCCCACAAGTTGGTGGCA-CTCTTTCAAAGCCCACACAAGTCGGTGGCA-AGTCTTTTC
1 TTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAG-CC-CACAAGTCAGTGGCATA-CCTTTTC
740325 AAAGCCCACA
62 AAAGCCCACA
740335 CAAGTTAGTG
Statistics
Matches: 631, Mismatches: 103, Indels: 55
0.80 0.13 0.07
Matches are distributed among these distances:
83 44 0.07
84 102 0.16
85 138 0.22
86 142 0.23
87 76 0.12
88 49 0.08
89 13 0.02
90 13 0.02
91 12 0.02
92 30 0.05
93 4 0.01
94 8 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (87 bp):
TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATACCTTTTCAAAG
CCCACAAGTCAGTGGCACTCTT
Found at i:740474 original size:45 final size:46
Alignment explanation
Indices: 740419--740544 Score: 155
Period size: 49 Copynumber: 2.7 Consensus size: 46
740409 TTAAAGTCTG
* *
740419 ATGTCACTGGCATTGAATCAGCATATTGGCACCTTT-ATTAGCCCA
1 ATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATTAGCCCA
* *
740464 ATGTCGCTGGCCTTGAATCAGCATATTGGTCCACTTTTCCCTTAGCCCA
1 ATGTCGCTGGCCTTGAATCAGCATATTGG--CACCTTT-CATTAGCCCA
** *
740513 ATGTCGCTGGCCTTGAATTGGCACATTGGCAC
1 ATGTCGCTGGCCTTGAATCAGCATATTGGCAC
740545 TCCTCTCATC
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
45 27 0.39
47 9 0.13
49 34 0.49
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (46 bp):
ATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATTAGCCCA
Found at i:741592 original size:48 final size:48
Alignment explanation
Indices: 741531--741623 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
741521 AGTCACATTT
* * *
741531 TTACCCAGATGTATCGATACTTTTTTCAATATATCGATACATTCTGTC
1 TTACCCAGATGTATCGATACATGTATCAATATATCGATACATTCTGTC
* * *
741579 TTACCTAGATGTATCGATACATGTATGAATGTATCGATACATTCT
1 TTACCCAGATGTATCGATACATGTATCAATATATCGATACATTCT
741624 TCAATGTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (48 bp):
TTACCCAGATGTATCGATACATGTATCAATATATCGATACATTCTGTC
Found at i:741629 original size:20 final size:20
Alignment explanation
Indices: 741587--741643 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
741577 TCTTACCTAG
* *
741587 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
741607 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
*
741627 ATGTATCAATACATTCT
1 ATGTATCGATACATTCT
741644 GTCTTTTTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:741648 original size:68 final size:69
Alignment explanation
Indices: 741539--741688 Score: 194
Period size: 68 Copynumber: 2.2 Consensus size: 69
741529 TTTTACCCAG
* * * *
741539 ATGTATCGATACTTTTTTCAATATATCGATACATTCTGTC-TTACCTAGATGTATCGATACATGT
1 ATGTATCGATACATTCTTCAATATATCAATACATTCTGTCTTTACCCAGATGTATCGATACATGT
*
741603 ATGA
66 ATCA
* *
741607 ATGTATCGATACATTCTTCAATGTATCAATACATTCTGTCTTTTTACCCAGATGTATTGATACAT
1 ATGTATCGATACATTCTTCAATATATCAATACATTCTGTC--TTTACCCAGATGTATCGATACAT
* *
741672 TTTTCA
64 GTATCA
741678 ATGTATCGATA
1 ATGTATCGATA
741689 TATCTAGTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
68 36 0.51
71 34 0.49
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (69 bp):
ATGTATCGATACATTCTTCAATATATCAATACATTCTGTCTTTACCCAGATGTATCGATACATGT
ATCA
Found at i:751248 original size:18 final size:18
Alignment explanation
Indices: 751225--751260 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
751215 CTTTTTAGTC
751225 ACCTTAGTCAAAACTCTA
1 ACCTTAGTCAAAACTCTA
*
751243 ACCTTAGTTAAAACTCTA
1 ACCTTAGTCAAAACTCTA
751261 TTGAGTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.31
Consensus pattern (18 bp):
ACCTTAGTCAAAACTCTA
Found at i:753715 original size:14 final size:13
Alignment explanation
Indices: 753696--753774 Score: 59
Period size: 14 Copynumber: 5.8 Consensus size: 13
753686 AAAGTTAATA
753696 ATCAAAGTCAACT
1 ATCAAAGTCAACT
*
753709 GATCAAAGTCAATT
1 -ATCAAAGTCAACT
* *
753723 AACCAAGGTCAACT
1 -ATCAAAGTCAACT
* *
753737 TTCAAAGTCAATT
1 ATCAAAGTCAACT
* * *
753750 GGTCAAGGTCACCT
1 -ATCAAAGTCAACT
753764 ATCAAAGTCAA
1 ATCAAAGTCAA
753775 TAGTTAATGG
Statistics
Matches: 48, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
13 17 0.35
14 31 0.65
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.24
Consensus pattern (13 bp):
ATCAAAGTCAACT
Found at i:753787 original size:27 final size:27
Alignment explanation
Indices: 753697--753775 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
753687 AAGTTAATAA
* *
753697 TCAAAGTCAACTGATCAAAGTCAATTAA
1 TCAAGGTCAACT-ATCAAAGTCAATTAG
* * *
753725 CCAAGGTCAACTTTCAAAGTCAATTGG
1 TCAAGGTCAACTATCAAAGTCAATTAG
*
753752 TCAAGGTCACCTATCAAAGTCAAT
1 TCAAGGTCAACTATCAAAGTCAAT
753776 AGTTAATGGT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 33 0.77
28 10 0.23
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (27 bp):
TCAAGGTCAACTATCAAAGTCAATTAG
Found at i:761537 original size:880 final size:871
Alignment explanation
Indices: 759817--762200 Score: 2632
Period size: 880 Copynumber: 2.7 Consensus size: 871
759807 TGTAAGTGAG
* *
759817 TTGTCTGTTAGGCAAATGTTATGTTTTTACAAAATAACTCTTTAGTTAAGTGTTATGTCTTTACA
1 TTGTCTGATAGGCAAAGGTTATGTTTTTACAAAATAACTCTTTAGTTAAGTGTTATGTCTTTAC-
* * *
759882 AAATAACTCTTTTGAATGTTGCA-TTCTTTCAACACAAC-TTTTTAATGCAGTT-AAAAATAAAA
65 AAATAACT-TTTTTAATG-T-CAGTTCTTTTAACACAACTTTTTTAATACAGTTAAAAAATAAAA
*
759944 TTTTAAATTATTATTTAATTATTTTGAAAAATAAAAAATAATAAAAATAAAATTTTAATTACATC
127 TTTTAAATTATTATTTAATTATTTTGAAAAAT----AA-AATAAAAATAAAATTTTAATTGCATC
* *
760009 AGCAAATTTTTATGCTAAAGTGCCAAAGTGCCCTATCTTTGAC-TTAAATAATTATTAGCCCACT
187 AGCAAA--TTTAAG-TCAAGTGCCAAAGTGCCC-ATCTTTGACATTAAATAATTATTAGCCCACT
* * * * * * *
760073 AGGTGAGCTTAAAAGTAATTTGGGCTAAAGCACTATATTTAATCATCGAACTTAATAAGAATACT
248 AGGAGAGCCTATAA-TAATTTGGGCTAAAGCACTTTATTTAATCGTCCAACTTAACAAGAATACT
* * * *
760138 ATATTATAAATGGTTTATTCTTAACTTTTCTATTCAATGTGGGATAAGGTTTTTTCCTACCATCT
312 ATATTATAAATAGTTTATTCTTAACTTTTCTATTTAATGTGGGATAAGGTTTTTTCATACCATCA
* * * *
760203 TTACAAACTGCCAACAATTAAAAACCAAGAATTTTAATTCATAATGAACTCAACTTCCAATATTT
377 TTACAAACTACCAACAATT-AGAACCAAGAATTTTAATTCATATTGAACTTAACTTCCAATATTT
** * * * * * *
760268 TGCATAAAT-CTAAAATCTTTACTTAAAAAGCCATATTTATTGGGACTCAAGATGTCTTATCCTT
441 CACACAAATCCT-AACTCTTCACCTAAAAA-CCATATTTTTTGGGACTCAAGATGTCTTAT-CTC
* * * * * *
760332 TTTTTTTACTTTATTTGAAATAAACAATTAGAT---AA-AAAATTAAAGAAAATAAA-CAAATAA
503 ATCTTTTACTTTATCTAAAATAAATAATTAGATAAAAATAAAATTAAAGAAAATAAAGAAAATAA
* * * *
760392 ATAAATAAGCAATCTAGGCTTGACC-AAATTGGGTACTTTGGACAATAATTAGACCTCGACCCAA
568 ATAAATAAGCAATATAGGCTTAACCTAAATTGGG-ACTTTAGACAATAATTAGACCTAGACCCAA
* * *
760456 AGTAAATCAAAATCAATAGTTCAAACGCACCAGATAAATCGGGTGTCTACACATTGTAATCTTTC
632 AGTAAATCAAAATCAATAGTTCAAACGCACCAGATAAATCGGGTGTCCACACACTATAATCTTTC
* * * * * *
760521 CAAAATGTTCATTTTCTTGTCAAGGAAAGAAAAATAGCGTGGAAAACAAGGATCAGACACATCAT
697 CAAAATGTCCATTCTCCTCTCAAGGAAAGAAAAATAGCATGGAAAACAAGGATCAGACAAATCAT
* * *
760586 ATGCGAGAGGAACACTACCAAAATCACATAAACTTAAAATCCTTCTTAAAATTCTTTATCACTAA
762 ATGCGAGAGGAACACTACCAAAATCACATAAACTTAAAATCCTTCCTAAAATTCTCTATAACTAA
760651 ATGCAAATATTTAAGGAAAGTTTTTGCATCAATAAAGCGAATATAA
827 ATGCAAATATTT-AGGAAAGTTTTTGCATCAATAAAGCGAATATAA
* * * * *
760697 TTGTCTGATAGGCAAAGGTAATATTTTTACATAACAACTCTTTAGTTAAGTGTTATGTCTTTCCA
1 TTGTCTGATAGGCAAAGGTTATGTTTTTACAAAATAACTCTTTAGTTAAGTGTTATGTCTTTACA
* *
760762 ATACAACTTTTTTATATGTCAAGTTCTTTTAACACAACTTTTTTAATATAGTTAAAAAATAAAAT
66 A-ATAACTTTTTTA-ATGTC-AGTTCTTTTAACACAACTTTTTTAATACAGTTAAAAAATAAAAT
* *
760827 TTTAAATTATTATTTAACTATTTTGAAAAAT-AAATAAAAATAAAATTTTAATTGCATAAGCAAA
128 TTTAAATTATTATTTAATTATTTTGAAAAATAAAATAAAAATAAAATTTTAATTGCATCAGCAAA
*** * *
760891 TTTAAGTCGAAGTGTTGAAGTGCCCATTTTTGACATTAAATAATTATTAGCCGACTAGGAGAGCC
193 TTTAAGTC-AAGTGCCAAAGTGCCCATCTTTGACATTAAATAATTATTAGCCCACTAGGAGAGCC
* * *
760956 TAGTAATAATTTAGGCTAAAGCACTTTATTTAATCGTCCAATTTAACAGGAATACTATATTATAA
257 TA-TAATAATTTGGGCTAAAGCACTTTATTTAATCGTCCAACTTAACAAGAATACTATATTATAA
* * *
761021 ATAGTTTATTCTTAAATTTTTTATTTAATGTGGGATAAAGTTTATTT-ATACCATCATTACAAAC
321 ATAGTTTATTCTTAACTTTTCTATTTAATGTGGGATAAGGTTT-TTTCATACCATCATTACAAAC
* * * * * *
761085 TACTAGCAATTAGAGCTAAGAATTTTAATTCATATTGAACTTAGCTTCCAATAGTTCACACAAAT
385 TACCAACAATTAGAACCAAGAATTTTAATTCATATTGAACTTAACTTCCAATATTTCACACAAAT
* *
761150 CCTAACTCTTCACCTAAATAACCTTATTTGTTTGGGACTCAAGATGTCGTATCTCATCTTTT-CT
450 CCTAACTCTTCACCTAAA-AACCATATTT-TTTGGGACTCAAGATGTCTTATCTCATCTTTTACT
*
761214 TTATCTAAAATAAATAATTGGATAAAAATAAAATTAAAGAAAAGTTTAAAGAAAATAAATAAATA
513 TTATCTAAAATAAATAATTAGATAAAAATAAAATTAAAGAAAA---TAAAGAAAATAAATAAATA
* * * * * *
761279 AGCAATATGGGCTTAACCTAAATTGGGACTTTATATAATAATTAGGCCTAGGCCCAAAGTAACT-
575 AGCAATATAGGCTTAACCTAAATTGGGACTTTAGACAATAATTAGACCTAGACCCAAAGTAAATC
* * *** * *
761343 AAAATCAATAGTTTAAATGCTTTAGATAAAATTGGGTGTCCACACACTATAATCTTTCCGAAATG
640 AAAATCAATAGTTCAAACGCACCAGAT-AAATCGGGTGTCCACACACTATAATCTTTCCAAAATG
* ** * ** *
761408 TCCA-TCTCCTCTCAAGGAAAGAAAAATAGCATGGCAGGCTAAGGAAT-AGTCAAATTGTATTCG
704 TCCATTCTCCTCTCAAGGAAAGAAAAATAGCATGGAAAAC-AAGG-ATCAGACAAATCATATGCG
** ** * *
761471 AGAGGAACACTATTAAAATCGTATAAACTTAAAATCCTTCCTAGAATTCTCTA-AAGCTAGATGC
767 AGAGGAACACTACCAAAATCACATAAACTTAAAATCCTTCCTAAAATTCTCTATAA-CTAAATGC
* * * *
761535 AAATATTTAGGGAATTTTTTGCATCAATAAAGTGGATATAA
831 AAATATTTAGGAAAGTTTTTGCATCAATAAAGCGAATATAA
* * * **
761576 TTGTC-CATTGGGCAAAGGTTATGTTTTTACACAATAACTCTTTACCTAAGTG-TATAGTCTTTA
1 TTGTCTGA-TAGGCAAAGGTTATGTTTTTACAAAATAACTCTTTAGTTAAGTGTTAT-GTCTTTA
* ** * * *
761639 CAAATTAACTCTTTTAAATGTTGTGTTATTTTAACACAACTTTTCTAATACA-ATAAAAAAT-AA
64 CAAA-TAACT-TTTTTAATG-TCAGTTCTTTTAACACAACTTTTTTAATACAGTTAAAAAATAAA
** *
761702 ATTTTGAAATTATTATTTAATTATTCTAAAAAAAAGATAAAAATAATAACAATAAATTTTTAATT
126 ATTTT-AAATTATTATTTAATTATT-T--TGAAAA-AT-AAAAT-A-AA-AATAAAATTTTAATT
* * * * *
761767 GCATCATCAAATTTAAGCTCAAGTGCCAAAGTGTCTATCTTTGATATTAAATAATTACTAGCCCA
182 GCATCAGCAAATTTAAG-TCAAGTGCCAAAGTGCCCATCTTTGACATTAAATAATTATTAGCCCA
* * * * * *
761832 CTA-GATGAGCTCAATAACAATTTGGGCTAAAGCATTTTACTTAATAGTCCAACTTAACAAAAAT
246 CTAGGA-GAGC-CTATAATAATTTGGGCTAAAGCACTTTATTTAATCGTCCAACTTAACAAGAAT
*
761896 ACTATACCTTA-AAA-AGTTTATTCTTAACTTTTCTATTTAACT-TGTGATAAGGTTTTTTCCA-
309 ACTATA--TTATAAATAGTTTATTCTTAACTTTTCTATTTAA-TGTGGGATAAGGTTTTTT-CAT
* * *
761957 ACCATCATTACAAACAACCAACAACTAGAACCAAGAATTTTAATTC--CTTGAACTTAACTTCCA
370 ACCATCATTACAAACTACCAACAATTAGAACCAAGAATTTTAATTCATATTGAACTTAACTTCCA
* * * * *
762020 ATATTTCACACAAATCCAAACTCTTCACCTAAAGAGCCATATTTATTTAGGACTTAAGATTTCTT
435 ATATTTCACACAAATCCTAACTCTTCACCTAAA-AACCATATTT-TTTGGGACTCAAGATGTCTT
762085 ATCTCATCTAATTTTTTACTTTATCTAAAATAAATAATTAGATAAAAATAAAATTAAAGAAAAAA
498 ATCTCATC-----TTTTACTTTATCTAAAATAAATAATTAGATAAAAATAAAATTAAAG--AAAA
* *
762150 TAAAGAAAATAAATAAATAAGCAATATTGGCTTAA-CTCAAATTGAGACTTT
556 TAAAGAAAATAAATAAATAAGCAATATAGGCTTAACCT-AAATTGGGACTTT
762201 GTGTAACAAT
Statistics
Matches: 1268, Mismatches: 178, Indels: 106
0.82 0.11 0.07
Matches are distributed among these distances:
872 21 0.02
873 79 0.06
874 184 0.15
875 7 0.01
876 44 0.03
877 8 0.01
878 32 0.03
879 177 0.14
880 254 0.20
881 26 0.02
882 43 0.03
884 4 0.00
885 79 0.06
886 7 0.01
887 195 0.15
888 9 0.01
889 5 0.00
890 50 0.04
891 40 0.03
893 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (871 bp):
TTGTCTGATAGGCAAAGGTTATGTTTTTACAAAATAACTCTTTAGTTAAGTGTTATGTCTTTACA
AATAACTTTTTTAATGTCAGTTCTTTTAACACAACTTTTTTAATACAGTTAAAAAATAAAATTTT
AAATTATTATTTAATTATTTTGAAAAATAAAATAAAAATAAAATTTTAATTGCATCAGCAAATTT
AAGTCAAGTGCCAAAGTGCCCATCTTTGACATTAAATAATTATTAGCCCACTAGGAGAGCCTATA
ATAATTTGGGCTAAAGCACTTTATTTAATCGTCCAACTTAACAAGAATACTATATTATAAATAGT
TTATTCTTAACTTTTCTATTTAATGTGGGATAAGGTTTTTTCATACCATCATTACAAACTACCAA
CAATTAGAACCAAGAATTTTAATTCATATTGAACTTAACTTCCAATATTTCACACAAATCCTAAC
TCTTCACCTAAAAACCATATTTTTTGGGACTCAAGATGTCTTATCTCATCTTTTACTTTATCTAA
AATAAATAATTAGATAAAAATAAAATTAAAGAAAATAAAGAAAATAAATAAATAAGCAATATAGG
CTTAACCTAAATTGGGACTTTAGACAATAATTAGACCTAGACCCAAAGTAAATCAAAATCAATAG
TTCAAACGCACCAGATAAATCGGGTGTCCACACACTATAATCTTTCCAAAATGTCCATTCTCCTC
TCAAGGAAAGAAAAATAGCATGGAAAACAAGGATCAGACAAATCATATGCGAGAGGAACACTACC
AAAATCACATAAACTTAAAATCCTTCCTAAAATTCTCTATAACTAAATGCAAATATTTAGGAAAG
TTTTTGCATCAATAAAGCGAATATAA
Found at i:768371 original size:49 final size:48
Alignment explanation
Indices: 768316--768461 Score: 148
Period size: 49 Copynumber: 2.9 Consensus size: 48
768306 TAATATGTTT
* * *
768316 ATTCAAGGCCAGCAATATTGGACTTAAAAAAAAAGGTGCCAATGTGCTG
1 ATTCAAGGCCAGCGATATTGGACTTAAAAAAAAA-GTGCCAATGTACTA
* * * *
768365 ATTCAAGTCCAGCGACATTGGACTTAAAGATGACAACAGTGCCAATATACTA
1 ATTCAAGGCCAGCGATATTGGACTTAAA-A--A-AAAAGTGCCAATGTACTA
* *
768417 ATTCAAGGCCAGCTGATATTGGATTTAAGAAAAAAAGTGGCAATG
1 ATTCAAGGCCAGC-GATATTGGACTTAA-AAAAAAAGTGCCAATG
768462 AAGGTCTGAC
Statistics
Matches: 78, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
49 25 0.32
50 11 0.14
51 1 0.01
52 24 0.31
53 16 0.21
54 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (48 bp):
ATTCAAGGCCAGCGATATTGGACTTAAAAAAAAAGTGCCAATGTACTA
Found at i:768426 original size:101 final size:104
Alignment explanation
Indices: 768245--768461 Score: 246
Period size: 102 Copynumber: 2.1 Consensus size: 104
768235 GAAGAATGAT
* * * ** *
768245 AAAGGTGCCAATATACTGATTCACAATCAGAGATATCGGGCTTAAAAGATGACAAGGGTGCTAAT
1 AAAGGTGCCAATGTACTGATTCACAATCAGAGACATCGGACTTAAAAGATGACAACAGTGCCAAT
** *
768310 ATGTTTATTCAAGGCCAGC-AATATTGGACTTAA-AAAA
66 ATACTAATTCAAGGCCAGCTAATATTGGACTTAAGAAAA
* * * *
768347 AAAGGTGCCAATGTGCTGATTCA-AGTCCAGCGACATTGGACTT-AAAGATGACAACAGTGCCAA
1 AAAGGTGCCAATGTACTGATTCACAAT-CAGAGACATCGGACTTAAAAGATGACAACAGTGCCAA
* *
768410 TATACTAATTCAAGGCCAGCTGATATTGGATTTAAGAAAA
65 TATACTAATTCAAGGCCAGCTAATATTGGACTTAAGAAAA
*
768450 AAA-GTGGCAATG
1 AAAGGTGCCAATG
768462 AAGGTCTGAC
Statistics
Matches: 96, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
101 36 0.38
102 53 0.55
103 7 0.07
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (104 bp):
AAAGGTGCCAATGTACTGATTCACAATCAGAGACATCGGACTTAAAAGATGACAACAGTGCCAAT
ATACTAATTCAAGGCCAGCTAATATTGGACTTAAGAAAA
Found at i:768429 original size:52 final size:52
Alignment explanation
Indices: 768289--768444 Score: 149
Period size: 49 Copynumber: 3.0 Consensus size: 52
768279 ATCGGGCTTA
** * * * *
768289 AAAGATGACAAGGGTGCTAATATGTTTATTCAAGGCCAGCAATATTGGACTT
1 AAAGATGACAAAAGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT
* * * *
768341 AAA-A--A-AAAAGGTGCCAATGTGCTGATTCAAGTCCAGCGACATTGGACTT
1 AAAGATGACAAAA-GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT
* * *
768390 AAAGATGACAACAGTGCCAATATACTAATTCAAGGCCAGCTGATATTGGATTT
1 AAAGATGACAAAAGTGCCAATATGCTAATTCAAGGCCAGC-GATATTGGACTT
768443 AA
1 AA
768445 GAAAAAAAGT
Statistics
Matches: 82, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
48 2 0.02
49 36 0.44
50 1 0.01
51 1 0.01
52 27 0.33
53 15 0.18
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (52 bp):
AAAGATGACAAAAGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT
Found at i:768562 original size:58 final size:58
Alignment explanation
Indices: 768458--768567 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 58
768448 AAAAAGTGGC
* * ***
768458 AATGAAGGTCTGACAAATACCAATGTGTTGATTCAAGGCTTGCAACATTGGGCTTGAG
1 AATGAAGGTCTGACAAATACCAATGTGTTAACTCAAGGCCAACAACATTGGGCTTGAG
* *
768516 AATGAAGGTTTGACAAATACCAGTGTGTTAACTCAAGGCCAACAACATTGGG
1 AATGAAGGTCTGACAAATACCAATGTGTTAACTCAAGGCCAACAACATTGGG
768568 TTTGGAAAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (58 bp):
AATGAAGGTCTGACAAATACCAATGTGTTAACTCAAGGCCAACAACATTGGGCTTGAG
Found at i:768618 original size:32 final size:33
Alignment explanation
Indices: 768582--768666 Score: 111
Period size: 32 Copynumber: 2.6 Consensus size: 33
768572 GAAAGGGATA
* * *
768582 CCACCAACCTGTGTGGGCTTTTGA-GAAGGTTT
1 CCACCAACTTGTGTGGGCTTTTGAGGAAGATTG
768614 CCACCAACTTGTGTGGGC-TTTGAGGAAGATTG
1 CCACCAACTTGTGTGGGCTTTTGAGGAAGATTG
* *
768646 CCACCAGCTTATGTGGGCTTT
1 CCACCAACTTGTGTGGGCTTT
768667 GAAAAAAGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 5 0.11
32 39 0.85
33 2 0.04
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (33 bp):
CCACCAACTTGTGTGGGCTTTTGAGGAAGATTG
Found at i:768708 original size:33 final size:33
Alignment explanation
Indices: 768580--768726 Score: 127
Period size: 33 Copynumber: 4.5 Consensus size: 33
768570 TGGAAAGGGA
* *
768580 TACCACCAACCTGTGTGGGCTTTTGAG-AAGGT
1 TACCACCAACTTGTGTGGGCTTTTAAGAAAGGT
* * * *
768612 TTCCACCAACTTGTGTGGGC-TTTGAGGAAGAT
1 TACCACCAACTTGTGTGGGCTTTTAAGAAAGGT
* * * * *
768644 TGCCACCAGCTTATGTGGGCTTTGAAAAAAGGT
1 TACCACCAACTTGTGTGGGCTTTTAAGAAAGGT
* * * *
768677 TACCACTACCTTGTGTAGGCTTTTAAGAAAGGA
1 TACCACCAACTTGTGTGGGCTTTTAAGAAAGGT
* *
768710 TGCCACCAACTTATGTG
1 TACCACCAACTTGTGTG
768727 AGCCTAAAAA
Statistics
Matches: 89, Mismatches: 24, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
31 6 0.07
32 39 0.44
33 44 0.49
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (33 bp):
TACCACCAACTTGTGTGGGCTTTTAAGAAAGGT
Found at i:770310 original size:13 final size:12
Alignment explanation
Indices: 770283--770335 Score: 67
Period size: 13 Copynumber: 4.5 Consensus size: 12
770273 CATCCGAACC
770283 TTTTTT-TTTTG
1 TTTTTTGTTTTG
770294 -TTTTTGTTTTG
1 TTTTTTGTTTTG
770305 TATTTTT-TTTTG
1 T-TTTTTGTTTTG
770317 TTTTTTGTTGTTG
1 TTTTTTGTT-TTG
770330 TTTTTT
1 TTTTTT
770336 TTGGCGAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.14
11 10 0.27
12 8 0.22
13 14 0.38
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (12 bp):
TTTTTTGTTTTG
Found at i:770311 original size:24 final size:25
Alignment explanation
Indices: 770283--770337 Score: 87
Period size: 23 Copynumber: 2.3 Consensus size: 25
770273 CATCCGAACC
770283 TTTTTTTTTTG-TTTTTGTT-TTGT
1 TTTTTTTTTTGTTTTTTGTTGTTGT
*
770306 ATTTTTTTTTGTTTTTTGTTGTTGT
1 TTTTTTTTTTGTTTTTTGTTGTTGT
770331 TTTTTTT
1 TTTTTTT
770338 GGCGAATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 10 0.36
24 8 0.29
25 10 0.36
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (25 bp):
TTTTTTTTTTGTTTTTTGTTGTTGT
Found at i:770314 original size:23 final size:24
Alignment explanation
Indices: 770283--770337 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
770273 CATCCGAACC
770283 TTTTTTTTTTG-TTTTTGTT-TTG
1 TTTTTTTTTTGTTTTTTGTTGTTG
770305 TATTTTTTTTTGTTTTTTGTTGTTG
1 T-TTTTTTTTTGTTTTTTGTTGTTG
770330 TTTTTTTT
1 TTTTTTTT
770338 GGCGAATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 1 0.03
23 10 0.33
24 15 0.50
25 4 0.13
ACGTcount: A:0.02, C:0.00, G:0.13, T:0.85
Consensus pattern (24 bp):
TTTTTTTTTTGTTTTTTGTTGTTG
Found at i:784464 original size:22 final size:20
Alignment explanation
Indices: 784415--784488 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
784405 AAAAACCCAG
784415 AATGTATCGATATAATGAGA
1 AATGTATCGATATAATGAGA
784435 AATGTATCGATATAATTGTA-A
1 AATGTATCGATATAA-TG-AGA
* * * *
784456 GCATGTATCGATATATTTAGT
1 -AATGTATCGATATAATGAGA
784477 AATGTATCGATA
1 AATGTATCGATA
784489 CATTTCCTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
20 27 0.60
21 4 0.09
22 14 0.31
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (20 bp):
AATGTATCGATATAATGAGA
Found at i:787970 original size:21 final size:22
Alignment explanation
Indices: 787933--787974 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
787923 AAAGGTCAAA
787933 ACCCTAGAAAGTATCGATACAG
1 ACCCTAGAAAGTATCGATACAG
787955 ACCCTAGAAA-TATCGATACA
1 ACCCTAGAAAGTATCGATACA
787975 TATTGCTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.43, C:0.24, G:0.14, T:0.19
Consensus pattern (22 bp):
ACCCTAGAAAGTATCGATACAG
Found at i:789850 original size:20 final size:20
Alignment explanation
Indices: 789825--789872 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
789815 ATGCTCAAAG
*
789825 AAGGAACAAGCAAGAAGGAT
1 AAGGAACAAGCAAGAAGGAC
789845 AAGGAACAAGCAAGAAGGAC
1 AAGGAACAAGCAAGAAGGAC
789865 AAGGAACA
1 AAGGAACA
789873 TATCATATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.56, C:0.12, G:0.29, T:0.02
Consensus pattern (20 bp):
AAGGAACAAGCAAGAAGGAC
Found at i:790256 original size:21 final size:21
Alignment explanation
Indices: 790197--790258 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
790187 TAATCTGCTT
*
790197 GAAAAGAAAA-AAGAAGAATTA
1 GAAAAGAAAATAAG-TGAATTA
790218 GAAAAGAAAATAAGTGAATTA
1 GAAAAGAAAATAAGTGAATTA
* *
790239 GAAAAGAAGATAATTGAATT
1 GAAAAGAAAATAAGTGAATT
790259 GCAAGATGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 34 0.92
22 3 0.08
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.18
Consensus pattern (21 bp):
GAAAAGAAAATAAGTGAATTA
Found at i:794876 original size:19 final size:20
Alignment explanation
Indices: 794852--794904 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
794842 ATTGATACTA
**
794852 TGTATCAATACATGTTC-AT
1 TGTATCAATACATGCACAAT
794871 TGTATCAATACATGCACAAT
1 TGTATCAATACATGCACAAT
*
794891 TGTATCGATACATG
1 TGTATCAATACATG
794905 AAACTGACAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTATCAATACATGCACAAT
Found at i:794968 original size:13 final size:13
Alignment explanation
Indices: 794950--794979 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
794940 GATACATGGC
794950 ACATTGTATCGAT
1 ACATTGTATCGAT
794963 ACATTGTATCGAT
1 ACATTGTATCGAT
794976 ACAT
1 ACAT
794980 GAAGAATTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:794975 original size:33 final size:32
Alignment explanation
Indices: 794933--795000 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
794923 CTACCACTAT
794933 TTGTATCGATACATG-GCACATTGTATCGATACA
1 TTGTATCGATACATGAG-A-ATTGTATCGATACA
794966 TTGTATCGATACATGAAGAATTGTATCGATACA
1 TTGTATCGATACATG-AGAATTGTATCGATACA
794999 TT
1 TT
795001 ATCCTAAACG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 31 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACATGAGAATTGTATCGATACA
Found at i:795972 original size:21 final size:20
Alignment explanation
Indices: 795947--796000 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
795937 TTACAAGCCA
795947 ATGTATCGATACAAT-TTGGT
1 ATGTATCGATACAATCTT-GT
*
795967 CATGTATGGATAC-ATCTTGT
1 -ATGTATCGATACAATCTTGT
795987 ATGTATCGATACAA
1 ATGTATCGATACAA
796001 ACAGTTAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 11 0.38
20 5 0.17
21 13 0.45
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATCTTGT
Found at i:796088 original size:20 final size:21
Alignment explanation
Indices: 796041--796093 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
796031 GCAAATCACT
*
796041 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
796062 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
796082 TGTATCGATACA
1 TGTATCGATACA
796094 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:796099 original size:13 final size:13
Alignment explanation
Indices: 796081--796105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
796071 ACATTTGGTC
796081 ATGTATCGATACA
1 ATGTATCGATACA
796094 ATGTATCGATAC
1 ATGTATCGATAC
796106 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:796716 original size:23 final size:24
Alignment explanation
Indices: 796685--796732 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
796675 AAAAAAAAAA
796685 TTCTCCCCCTTAATAAAACAATTT
1 TTCTCCCCCTTAATAAAACAATTT
796709 TTCTCCCCCTTAATAAAACAATTT
1 TTCTCCCCCTTAATAAAACAATTT
796733 CCTTTAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (24 bp):
TTCTCCCCCTTAATAAAACAATTT
Found at i:798136 original size:21 final size:22
Alignment explanation
Indices: 798112--798156 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
798102 GTGTGGGGGC
* *
798112 TGCCCGGTTGTGACCTGG-GAG
1 TGCCCGGTCGCGACCTGGTGAG
798133 TG-CCGGTCGCGACCTGGTGAG
1 TGCCCGGTCGCGACCTGGTGAG
798154 TGC
1 TGC
798157 TGCCTAGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.09, C:0.27, G:0.42, T:0.22
Consensus pattern (22 bp):
TGCCCGGTCGCGACCTGGTGAG
Found at i:798608 original size:13 final size:13
Alignment explanation
Indices: 798590--798615 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
798580 TATAAACCCT
798590 TTGTATCGATACA
1 TTGTATCGATACA
798603 TTGTATCGATACA
1 TTGTATCGATACA
798616 GAGAATGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:803137 original size:3 final size:3
Alignment explanation
Indices: 803129--803162 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
803119 TCTGAGTCAC
*
803129 CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
803163 CTTGATGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:804786 original size:34 final size:32
Alignment explanation
Indices: 804743--804807 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
804733 TACAAGCCAA
804743 TGTATCGATACAAT-TTGGTCATGTATCGATACAT
1 TGTATCGATAC-ATCTT-GT-ATGTATCGATACAT
804777 TGTATCGATACATCTTGTATGTATCGATACA
1 TGTATCGATACATCTTGTATGTATCGATACA
804808 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 13 0.43
33 4 0.13
34 13 0.43
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATCTTGTATGTATCGATACAT
Found at i:804796 original size:15 final size:13
Alignment explanation
Indices: 804764--804789 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
804754 AATTTGGTCA
804764 TGTATCGATACAT
1 TGTATCGATACAT
804777 TGTATCGATACAT
1 TGTATCGATACAT
804790 CTTGTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:804896 original size:20 final size:21
Alignment explanation
Indices: 804849--804901 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
804839 GCCAATCACC
*
804849 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
804870 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
804890 TGTATCGATACA
1 TGTATCGATACA
804902 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:804907 original size:13 final size:13
Alignment explanation
Indices: 804889--804913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
804879 ACATTTGGTC
804889 ATGTATCGATACA
1 ATGTATCGATACA
804902 ATGTATCGATAC
1 ATGTATCGATAC
804914 TATGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:806074 original size:32 final size:34
Alignment explanation
Indices: 806001--806077 Score: 95
Period size: 32 Copynumber: 2.3 Consensus size: 34
805991 TAGCTAAATA
* *
806001 GTATCGATACATCACTGTTCACGTATCACTATTTAT
1 GTATCGATAAATCACTGTT-ACG-ATCACTATTCAT
*
806037 ATATCGATAAATCACTGTT-C-ATCACTATTCAT
1 GTATCGATAAATCACTGTTACGATCACTATTCAT
806069 GTATCGATA
1 GTATCGATA
806078 CAGTGTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 19 0.51
34 1 0.03
36 17 0.46
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (34 bp):
GTATCGATAAATCACTGTTACGATCACTATTCAT
Found at i:806601 original size:32 final size:33
Alignment explanation
Indices: 806523--806615 Score: 113
Period size: 36 Copynumber: 2.8 Consensus size: 33
806513 TGATTGTGAG
806523 GTTCTATCTTAGCCTTTGTAAAAGATAGAGAGAAAA
1 GTTCTATCTTAGCC-TTG-AAAAGATAGAGAG-AAA
806559 GTTCTATCTTAGCCTGTGAAAAGATAG-G-G-AA
1 GTTCTATCTTAGCCT-TGAAAAGATAGAGAGAAA
806590 GTTTCTATCTTAGCCTT-AAAAGATAG
1 G-TTCTATCTTAGCCTTGAAAAGATAG
806616 TATTGTAAGG
Statistics
Matches: 55, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
30 9 0.16
31 4 0.07
32 14 0.25
33 1 0.02
34 1 0.02
35 10 0.18
36 16 0.29
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.32
Consensus pattern (33 bp):
GTTCTATCTTAGCCTTGAAAAGATAGAGAGAAA
Found at i:807994 original size:15 final size:15
Alignment explanation
Indices: 807974--808008 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
807964 AACCATCAAA
807974 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
807989 GATGATGATGATAAT
1 GATGATGAAGATAAT
808004 GATGA
1 GATGA
808009 ATTTGACCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:815193 original size:13 final size:13
Alignment explanation
Indices: 815175--815205 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
815165 CGATACCTGG
815175 TACATTGTATCCA
1 TACATTGTATCCA
*
815188 TACATTGTATCGA
1 TACATTGTATCCA
815201 TACAT
1 TACAT
815206 AAAGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTGTATCCA
Found at i:817866 original size:20 final size:20
Alignment explanation
Indices: 817843--817891 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
817833 GACCCAGAAA
* *
817843 TATCGATACATATTA-CTTTG
1 TATCGATACA-ATGATCTTGG
817863 TATCGATA-AATGATCTTGG
1 TATCGATACAATGATCTTGG
817882 TATCGATACA
1 TATCGATACA
817892 CAGCGAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.12
19 13 0.52
20 9 0.36
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (20 bp):
TATCGATACAATGATCTTGG
Found at i:820629 original size:19 final size:20
Alignment explanation
Indices: 820586--820639 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
820576 TGCCAATCTT
**
820586 ATGTATCGATACAATTGTCC
1 ATGTATCGATACAATTGAAC
820606 ATGTATCGATACAATT-AAC
1 ATGTATCGATACAATTGAAC
820625 ATGTATCGATACAAT
1 ATGTATCGATACAAT
820640 GTATCGATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATTGAAC
Found at i:820643 original size:13 final size:13
Alignment explanation
Indices: 820625--820651 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
820615 TACAATTAAC
820625 ATGTATCGATACA
1 ATGTATCGATACA
820638 ATGTATCGATACA
1 ATGTATCGATACA
820651 A
1 A
820652 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:822982 original size:20 final size:23
Alignment explanation
Indices: 822957--823003 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
822947 TTCTATTGAT
822957 GATTTTG-A-TGAAAAA-TGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
822977 GATTTTGAAGTGAAAAAGTGAAA
1 GATTTTGAAGTGAAAAAGTGAAA
823000 -ATTT
1 GATTT
823004 GTGGAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.29
21 1 0.04
22 11 0.46
23 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (23 bp):
GATTTTGAAGTGAAAAAGTGAAA
Found at i:829580 original size:19 final size:19
Alignment explanation
Indices: 829533--829587 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
829523 TGCCAGTTTT
* **
829533 ATGTATCGATATAATTGTCC
1 ATGTATCGATACAA-TGAAC
*
829553 ATGTTTCGATACAATGAAC
1 ATGTATCGATACAATGAAC
829572 ATGTATCGATACAATG
1 ATGTATCGATACAATG
829588 TATCGATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGTATCGATACAATGAAC
Found at i:829590 original size:13 final size:13
Alignment explanation
Indices: 829572--829598 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
829562 TACAATGAAC
829572 ATGTATCGATACA
1 ATGTATCGATACA
829585 ATGTATCGATACA
1 ATGTATCGATACA
829598 A
1 A
829599 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:837676 original size:19 final size:20
Alignment explanation
Indices: 837632--837684 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
837622 CTGCCAGTTT
* **
837632 CATGTATCGATATAATTGTC
1 CATGTATCGATACAATTGAA
837652 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
837671 CATGTATCGATACA
1 CATGTATCGATACA
837685 TTGTATCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:837691 original size:13 final size:13
Alignment explanation
Indices: 837673--837697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
837663 ACAATGAACA
837673 TGTATCGATACAT
1 TGTATCGATACAT
837686 TGTATCGATACA
1 TGTATCGATACA
837698 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:837714 original size:33 final size:32
Alignment explanation
Indices: 837654--837718 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
837644 TAATTGTCCA
*
837654 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
837686 TGTATCGATACAAAGCATA-ATGTATCGATACAT
1 TGTATCGATACAAAG-A-ACATGTATCGATACAT
837719 CTGGGTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:838994 original size:21 final size:21
Alignment explanation
Indices: 838970--839009 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
838960 CTATTTTAGG
* *
838970 AATAAAAATTTTGTTTTGACT
1 AATAAAAAGTTTGCTTTGACT
838991 AATAAAAAGTTTGCTTTGA
1 AATAAAAAGTTTGCTTTGA
839010 TTTTATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (21 bp):
AATAAAAAGTTTGCTTTGACT
Found at i:840075 original size:23 final size:24
Alignment explanation
Indices: 840045--840094 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
840035 ATTTTTATAA
* * *
840045 TTTT-AAAATATAATTTTCTTGTT
1 TTTTAAAAATAAAATTATCTTATT
840068 TTTTAAAAATAAAATTATCTTATT
1 TTTTAAAAATAAAATTATCTTATT
840092 TTT
1 TTT
840095 AACAAGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTTAAAAATAAAATTATCTTATT
Found at i:840320 original size:21 final size:21
Alignment explanation
Indices: 840295--840334 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
840285 AAGTATATGT
840295 AAAAAT-TATATTATCATATTA
1 AAAAATCTAT-TTATCATATTA
*
840316 AAAAATCTATTTATTATAT
1 AAAAATCTATTTATCATAT
840335 AACAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAAATCTATTTATCATATTA
Found at i:851164 original size:2 final size:2
Alignment explanation
Indices: 851159--851187 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
851149 AAAAAATTCT
851159 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
851188 TAAATTGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:851475 original size:2 final size:2
Alignment explanation
Indices: 851470--851498 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
851460 AAGATTTAAA
851470 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
851499 CTCACATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:852777 original size:2 final size:2
Alignment explanation
Indices: 852770--852816 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
852760 AAAAGCTTAA
* *
852770 AG AG AG AG AG AG GG AG AG GG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
852812 AG AG A
1 AG AG A
852817 AGAAGAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:853100 original size:16 final size:15
Alignment explanation
Indices: 853073--853134 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
853063 ATATAATAAT
853073 ATAAAAAATAAAAAA
1 ATAAAAAATAAAAAA
**
853088 ATAAAACAATAAAATG
1 ATAAAA-AATAAAAAA
* *
853104 ATACAATAAGAAAAAA
1 ATA-AAAAATAAAAAA
853120 ATAAAGTAAATAAAA
1 ATAAA--AAATAAAA
853135 TAGATATATA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
15 8 0.23
16 19 0.54
17 8 0.23
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (15 bp):
ATAAAAAATAAAAAA
Found at i:853166 original size:33 final size:33
Alignment explanation
Indices: 853141--853238 Score: 97
Period size: 35 Copynumber: 2.9 Consensus size: 33
853131 AAAATAGATA
* *
853141 TATAAATATTTTAAAATTTATATAAATATAAAT
1 TATAAATATATTAAAAATTATATAAATATAAAT
* * *
853174 TATTAATATATTAAAAATTATATTAATTTAAATAT
1 TATAAATATATTAAAAATTATATAAATAT-AA-AT
* * * *
853209 TTTAAATATAATAAAAATAATATGAATATA
1 TATAAATATATTAAAAATTATATAAATATA
853239 CGGATTACTA
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
33 24 0.46
34 3 0.06
35 25 0.48
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (33 bp):
TATAAATATATTAAAAATTATATAAATATAAAT
Found at i:853217 original size:35 final size:34
Alignment explanation
Indices: 853143--853238 Score: 104
Period size: 33 Copynumber: 2.8 Consensus size: 34
853133 AATAGATATA
* *
853143 TAAATATTTTAAAATTTATATAAATATAAATTAT
1 TAAATATATTAAAAATTATATAAATATAAATTAT
* * *
853177 T-AATATATTAAAAATTATATTAATTTAAATATTT
1 TAAATATATTAAAAATTATATAAATATAAAT-TAT
* * *
853211 TAAATATAATAAAAATAATATGAATATA
1 TAAATATATTAAAAATTATATAAATATA
853239 CGGATTACTA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
33 25 0.49
34 4 0.08
35 22 0.43
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (34 bp):
TAAATATATTAAAAATTATATAAATATAAATTAT
Found at i:853354 original size:16 final size:16
Alignment explanation
Indices: 853333--853385 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
853323 TAAAAATATT
*
853333 AATAATTCGAATTTAA
1 AATAATTCAAATTTAA
*
853349 AATAATTTAAATTTAA
1 AATAATTCAAATTTAA
* * *
853365 AATAATTTAAACTAAA
1 AATAATTCAAATTTAA
853381 AATAA
1 AATAA
853386 CTTAAATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (16 bp):
AATAATTCAAATTTAA
Found at i:853390 original size:16 final size:16
Alignment explanation
Indices: 853347--853391 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
853337 ATTCGAATTT
* *
853347 AAAATAATTTAAATTT
1 AAAATAATTTAAACTA
853363 AAAATAATTTAAACTA
1 AAAATAATTTAAACTA
*
853379 AAAATAACTTAAA
1 AAAATAATTTAAA
853392 TATTAATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATAATTTAAACTA
Found at i:853480 original size:15 final size:15
Alignment explanation
Indices: 853462--853504 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
853452 AATTTGAATA
853462 TTAAATTTAATTAAC
1 TTAAATTTAATTAAC
* * *
853477 TTAAATCTAAATAAT
1 TTAAATTTAATTAAC
853492 TTAAA-TTAATTAA
1 TTAAATTTAATTAA
853505 ATCAATGTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (15 bp):
TTAAATTTAATTAAC
Found at i:853542 original size:50 final size:51
Alignment explanation
Indices: 853462--853564 Score: 183
Period size: 50 Copynumber: 2.0 Consensus size: 51
853452 AATTTGAATA
853462 TTAAATTTAATTAACTTAAATCTAAATAATTTAAATTAATTAAATC-AATG
1 TTAAATTTAATTAACTTAAATCTAAATAATTTAAATTAATTAAATCAAATG
853512 TTAAA-TTAATTAACTTAAATCTAAAATAATTTAAATTAATTAAATCAAATG
1 TTAAATTTAATTAACTTAAATCT-AAATAATTTAAATTAATTAAATCAAATG
853563 TT
1 TT
853565 TTATTTAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
49 17 0.33
50 28 0.55
51 6 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (51 bp):
TTAAATTTAATTAACTTAAATCTAAATAATTTAAATTAATTAAATCAAATG
Found at i:853547 original size:16 final size:15
Alignment explanation
Indices: 853462--853655 Score: 89
Period size: 16 Copynumber: 12.6 Consensus size: 15
853452 AATTTGAATA
* * *
853462 TTAAATTTAATTAAC
1 TTAAATTAAAATAAT
853477 TTAAATCT-AAATAAT
1 TTAAAT-TAAAATAAT
853492 TTAAATTAATTAAATCAAT
1 TTAAATT-A--AAAT-AAT
* *
853511 GTTAAATT-AATTAAC
1 -TTAAATTAAAATAAT
853526 TTAAATCTAAAATAAT
1 TTAAAT-TAAAATAAT
* *
853542 TTAAATT-AATTAAA
1 TTAAATTAAAATAAT
* * *
853556 TCAAATGT---TTTAT
1 TTAAAT-TAAAATAAT
853569 TTAAATTTAAAATAAT
1 TTAAA-TTAAAATAAT
*
853585 TTAAATTTAAATTAAT
1 TTAAA-TTAAAATAAT
*
853601 TCAAAATTAAAATAAT
1 T-TAAATTAAAATAAT
853617 TTAAATTTAAAAT--T
1 TTAAA-TTAAAATAAT
*
853631 TTAAAATTAAAAAAAT
1 TT-AAATTAAAATAAT
*
853647 TTAATTTAA
1 TTAAATTAA
853656 TTAATTAAAT
Statistics
Matches: 140, Mismatches: 20, Indels: 38
0.71 0.10 0.19
Matches are distributed among these distances:
13 8 0.06
14 27 0.19
15 34 0.24
16 54 0.39
17 3 0.02
18 4 0.03
19 3 0.02
20 7 0.05
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.43
Consensus pattern (15 bp):
TTAAATTAAAATAAT
Found at i:853551 original size:10 final size:10
Alignment explanation
Indices: 853462--853623 Score: 66
Period size: 10 Copynumber: 15.7 Consensus size: 10
853452 AATTTGAATA
853462 TTAAATTTAA-
1 TTAAA-TTAAT
*
853472 TTAACTTAAAT
1 TTAAATT-AAT
*
853483 CTAAA-TAAT
1 TTAAATTAAT
853492 TTAAATTAA-
1 TTAAATTAAT
*
853501 TTAAATCAAT
1 TTAAATTAAT
853511 GTTAAATTAA-
1 -TTAAATTAAT
*
853521 TTAACTTAAAT
1 TTAAATT-AAT
* *
853532 CTAAAATAAT
1 TTAAATTAAT
853542 TTAAATTAA-
1 TTAAATTAAT
*
853551 TTAAATCAAATGT
1 TTAAAT-TAA--T
* *
853564 TTTATTTAAAT
1 TTAAATT-AAT
*
853575 TTAAAATAAT
1 TTAAATTAAT
*
853585 TTAAATTTAAA
1 TTAAA-TTAAT
*
853596 TT-AATTCAAAA
1 TTAAATT--AAT
*
853607 TTAAAATAAT
1 TTAAATTAAT
853617 TTAAATT
1 TTAAATT
853624 TAAAATTTTA
Statistics
Matches: 112, Mismatches: 24, Indels: 32
0.67 0.14 0.19
Matches are distributed among these distances:
9 31 0.28
10 42 0.38
11 30 0.27
12 3 0.03
13 6 0.05
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (10 bp):
TTAAATTAAT
Found at i:853579 original size:49 final size:48
Alignment explanation
Indices: 853468--853591 Score: 163
Period size: 50 Copynumber: 2.7 Consensus size: 48
853458 AATATTAAAT
853468 TTAATTAACTTAAATCT-AAATAATTTAAATTAATTAAATCAATGTTAAA
1 TTAATTAACTTAAATCTAAAATAATTTAAATTAATTAAATCAATGTT--A
853517 TTAATTAACTTAAATCTAAAATAATTTAAATTAATTAAATCAAATGTT-
1 TTAATTAACTTAAATCTAAAATAATTTAAATTAATTAAATC-AATGTTA
*
853565 TT-A-T---TTAAATTTAAAATAATTTAAATT
1 TTAATTAACTTAAATCTAAAATAATTTAAATT
853592 TAAATTAATT
Statistics
Matches: 72, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
43 22 0.31
46 1 0.01
47 1 0.01
48 2 0.03
49 17 0.24
50 23 0.32
51 6 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (48 bp):
TTAATTAACTTAAATCTAAAATAATTTAAATTAATTAAATCAATGTTA
Found at i:853616 original size:32 final size:31
Alignment explanation
Indices: 853569--853664 Score: 128
Period size: 32 Copynumber: 3.2 Consensus size: 31
853559 AATGTTTTAT
*
853569 TTAAATTTAAAATAATTTAAATTTAAATTAA
1 TTAAAATTAAAATAATTTAAATTTAAATTAA
853600 TTCAAAATTAAAATAATTTAAATTTAAAATT--
1 TT-AAAATTAAAATAATTTAAATTT-AAATTAA
*
853631 TTAAAATTAAAAAAATTT-AATTT-AATTAA
1 TTAAAATTAAAATAATTTAAATTTAAATTAA
853660 TTAAA
1 TTAAA
853665 TCTGAAATTA
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.07
29 10 0.17
30 15 0.25
31 4 0.07
32 21 0.36
33 5 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (31 bp):
TTAAAATTAAAATAATTTAAATTTAAATTAA
Found at i:854905 original size:10 final size:11
Alignment explanation
Indices: 854874--854905 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
854864 GTACAAAAGA
854874 AATAAAATAA-
1 AATAAAATAAT
854884 AATAAAATAAT
1 AATAAAATAAT
854895 AATAAAA-AAT
1 AATAAAATAAT
854905 A
1 A
854906 CATATTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 14 0.67
11 7 0.33
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:857215 original size:28 final size:29
Alignment explanation
Indices: 857184--857252 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
857174 TTATTTTATA
* *
857184 TTAAATTTATATATTTTTA-TAATTAAAT
1 TTAAATTTAAATAATTTTATTAATTAAAT
** *
857212 TTAAATAAAAATAATTTTATTAATTAAGT
1 TTAAATTTAAATAATTTTATTAATTAAAT
*
857241 TAAAATTTAAAT
1 TTAAATTTAAAT
857253 TAGATCAAAC
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
28 15 0.47
29 17 0.53
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TTAAATTTAAATAATTTTATTAATTAAAT
Found at i:857286 original size:18 final size:18
Alignment explanation
Indices: 857242--857286 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
857232 TAATTAAGTT
857242 AAAATTTAAATTAGATCAA
1 AAAATTTAAATTA-ATCAA
857261 ACAAATTTAAATT-ATCGAA
1 A-AAATTTAAATTAATC-AA
857280 AAAATTT
1 AAAATTT
857287 TTAAATTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 9 0.38
19 4 0.17
20 11 0.46
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (18 bp):
AAAATTTAAATTAATCAA
Found at i:858366 original size:20 final size:22
Alignment explanation
Indices: 858320--858370 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 22
858310 TATATTTAAA
*
858320 ATATTATATATTTATATAATTT
1 ATATTATATAATTATATAATTT
858342 -T-TTATA-AATTA-ATAATTT
1 ATATTATATAATTATATAATTT
858360 ATATTATATAA
1 ATATTATATAA
858371 ATTTTAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 7 0.28
19 5 0.20
20 10 0.40
21 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATATTATATAATTATATAATTT
Done.