Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1418

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10388
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32


Found at i:4016 original size:8 final size:8

Alignment explanation


    Indices: 4003--4028  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       3993 TGGTCATTTG

                    
       4003 ATTTGTTA
          1 ATTTGTTA

                    
       4011 ATTTGTTA
          1 ATTTGTTA

                    
       4019 ATTTGTTA
          1 ATTTGTTA

              
       4027 AT
          1 AT

       4029 AGTAATAAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62


Consensus pattern (8 bp):   
ATTTGTTA

Found at i:7756 original size:19 final size:18

Alignment explanation


    Indices: 7723--7759  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       7713 ATGAAAATTC

                              
       7723 ATAATAATGAATAATTTA
          1 ATAATAATGAATAATTTA

                     *         
       7741 ATAATAAATTAATAATTTA
          1 ATAAT-AATGAATAATTTA

       7760 TTAAAAAAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41


Consensus pattern (18 bp):   
ATAATAATGAATAATTTA
Done.