Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1421
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52806
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:6048 original size:42 final size:42
Alignment explanation
Indices: 5993--6111 Score: 177
Period size: 42 Copynumber: 2.8 Consensus size: 42
5983 TTCTTCTCTC
* *
5993 CTCCTCCTGTCATCCCTCCACTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCACTCTCTACTATCTCTCCTGTCT
6035 CTCCTCCTATCATCCCTCCTA-TCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCC-ACTCTCTACTATCTCTCCTGTCT
* * *
6077 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCACTCTCTACTATCTCT
6112 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
42 69 0.99
43 1 0.01
ACGTcount: A:0.09, C:0.46, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCACTCTCTACTATCTCTCCTGTCT
Found at i:6052 original size:12 final size:11
Alignment explanation
Indices: 6026--6101 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
6016 TCTATTATCT
*
6026 CTCCTGTCTCTC
1 CTCCTATCTC-C
6038 CTCCTATCATCC
1 CTCCTATC-TCC
6050 CTCCTATCT--
1 CTCCTATCTCC
*
6059 CTACTATCT--
1 CTCCTATCTCC
*
6068 CTCCTGTCTCTC
1 CTCCTATCTC-C
6080 CTCCTATCATCC
1 CTCCTATC-TCC
*
6092 CTCCTCTCTC
1 CTCCTATCTC
6102 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:6053 original size:24 final size:24
Alignment explanation
Indices: 6017--6102 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
6007 CCTCCACTCT
* *
6017 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
6041 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
6062 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
6083 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
6103 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:14552 original size:17 final size:17
Alignment explanation
Indices: 14530--14562 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14520 TAAAAATTTC
14530 AATTTACTTGTTTAAAG
1 AATTTACTTGTTTAAAG
14547 AATTTACTTGTTTAAA
1 AATTTACTTGTTTAAA
14563 AAGGTATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (17 bp):
AATTTACTTGTTTAAAG
Found at i:15302 original size:33 final size:33
Alignment explanation
Indices: 15260--15326 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
15250 TCTCCTATGC
15260 AATAAGGAAAAGTCTACTCCTTATCATAATCAA
1 AATAAGGAAAAGTCTACTCCTTATCATAATCAA
15293 AATAAGGAAAAGTCTACTCCTTATCATAATCAA
1 AATAAGGAAAAGTCTACTCCTTATCATAATCAA
15326 A
1 A
15327 TTCTTATTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.18, G:0.09, T:0.27
Consensus pattern (33 bp):
AATAAGGAAAAGTCTACTCCTTATCATAATCAA
Found at i:15481 original size:58 final size:58
Alignment explanation
Indices: 15376--15492 Score: 182
Period size: 58 Copynumber: 2.0 Consensus size: 58
15366 AACAATAGGC
*
15376 CCATCAATATATGCAAATTGGGCTCCACTCTTCTTGGACATGTGAATTGGGCTCCAAG
1 CCATCAATACATGCAAATTGGGCTCCACTCTTCTTGGACATGTGAATTGGGCTCCAAG
* **
15434 CCATGAATACATGCAAATTGGGCTTTACTCTTCTTGGACAT-TCGAATTGGGCTCCAAG
1 CCATCAATACATGCAAATTGGGCTCCACTCTTCTTGGACATGT-GAATTGGGCTCCAAG
15492 C
1 C
15493 GTTATTCTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 1 0.02
58 53 0.98
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (58 bp):
CCATCAATACATGCAAATTGGGCTCCACTCTTCTTGGACATGTGAATTGGGCTCCAAG
Found at i:15901 original size:29 final size:29
Alignment explanation
Indices: 15813--15901 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
15803 TAGTTGTATG
*
15813 AAAGTCCCTAAATCATGGAAAATGACCTA
1 AAAGTCTCTAAATCATGGAAAATGACCTA
* * * *
15842 AATGACAT-TAGAATGCAT-G-AAATAACATA
1 AAAGTC-TCTA-AAT-CATGGAAAATGACCTA
*
15871 AAAGTCTCTACATCATGGAAAATGACCTA
1 AAAGTCTCTAAATCATGGAAAATGACCTA
15900 AA
1 AA
15902 TGGCTTCAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
27 3 0.07
28 4 0.09
29 30 0.68
30 4 0.09
31 3 0.07
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.22
Consensus pattern (29 bp):
AAAGTCTCTAAATCATGGAAAATGACCTA
Found at i:15953 original size:57 final size:57
Alignment explanation
Indices: 15745--16550 Score: 601
Period size: 58 Copynumber: 13.9 Consensus size: 57
15735 AACATACATG
* * * * * *
15745 AAATTGCA-CTAAAGTTCTTAGATCATGGAAAATGACCTTAATGAC-CCTAACATTCAT
1 AAATTGCATC-AAAGTCCCTAGATCATGGAAAATGACCTAAATGACATC-AAAATTCAC
* * * * * * * *
15802 ATAGTTGTATGAAAGTCCCTAAATCATGGAAAATGACCTAAATGACATTAGAATGCATG
1 A-AATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
** * * * * *
15861 AAATAACATAAAAGTCTCTACATCATGGAAAATGACCTAAATGGCTTCAAAATTCAC
1 AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCAC
* * * ** *
15918 AAATTGCACCCAAGTCTCTAGATCATGGTGAATGACCTAAATGAGATCAAAATTCAC
1 AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCAC
* * * * * * *
15975 AAAATTGCATCCAAGTCCATAAATCATGGAAAATCACCTAAATTACATCAAAATGCATG
1 -AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
* * * * *
16034 AAA-TGATATAAAAGTCCCTAGATCATAATAGTAAATGACCTAAATGACATCAAAATTTAC
1 AAATTG-CATCAAAGTCCCTAGATC---ATGGAAAATGACCTAAATGACATCAAAATTCAC
* * * * *
16094 AAAATGCATCAAAGTCCCTAGATCATAGAAAATGACATAAATGACATCAAAATGCATG
1 AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
* * * *
16152 AAA-TGACATAAAAGTTCCTAGATCATGGAAAATGACTTAAATGGCATCAAAATTCAC
1 AAATTG-CATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCAC
* * *
16209 AAAATTACATCCAAA-TCCCTA-ATCACGGTAAATGACCTAAATGACATCAAAATTCAC
1 -AAATTGCAT-CAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCAC
* * * * *
16266 AAAATTGCATCCAAGT-CCTACATCATGGAAAATGACTTAAATGACATCAAAATGCATG
1 -AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
* * * *
16324 AAA-TGACATAAAAGTCCCTAGATCATGGTAAATGACCTAAATAACATCAAAGGTT-AC
1 AAATTG-CATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAA-ATTCAC
* * * * *
16381 AAAATTGTATCCAAA-TCCCTAGATCATTGAAAATAACCTAAATGACATCAAAATACATG
1 -AAATTGCAT-CAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
* ** * * * * * *
16440 AAA-TG-ATATAAAAACTTCTAGATCATGAAAAATAATCTAAATGGCATCAAAATTCATA
1 AAATTGCAT-CAAAGTC-CCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCA-C
* * * * *
16498 AAATTACATCCAAGTCCCTAGATGATGGTAAATGACCTAAATGACATCGAAAT
1 AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAAT
16551 GTGAGAAATC
Statistics
Matches: 589, Mismatches: 129, Indels: 61
0.76 0.17 0.08
Matches are distributed among these distances:
56 14 0.02
57 166 0.28
58 345 0.59
59 15 0.03
60 21 0.04
61 28 0.05
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (57 bp):
AAATTGCATCAAAGTCCCTAGATCATGGAAAATGACCTAAATGACATCAAAATTCAC
Found at i:15991 original size:115 final size:115
Alignment explanation
Indices: 15763--16550 Score: 637
Period size: 115 Copynumber: 6.8 Consensus size: 115
15753 CTAAAGTTCT
* * * * * ** *
15763 TAGATCATGGAAAATGACCTTAATGAC-CCTAACATTCAT-ATAGTTGTATGAAAGTCCCTAAAT
1 TAGATCATGGAAAATGACCTAAATGACATC-AAAATTCATCA-AATTGCATCCAAGTCCCTAGAT
* * * ** * * *
15826 CATGGAAAATGACCTAAATGACATTAGAATGCATGAAATAACATAAAAGTCTC
64 CATGGAAAATGACCTAAATGACATCAAAATTCACAAAAT-GCATCAAAGTCCC
* * * * *
15879 TACATCATGGAAAATGACCTAAATGGCTTCAAAATTCA-CAAATTGCACCCAAGTCTCTAGATCA
1 TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATCAAATTGCATCCAAGTCCCTAGATCA
** * * *
15943 TGGTGAATGACCTAAATGAGATCAAAATTCACAAAATTGCATCCAAGTCCA
66 TGGAAAATGACCTAAATGACATCAAAATTCACAAAA-TGCATCAAAGTCCC
* * * * * * **
15994 TAAATCATGGAAAATCACCTAAATTACATCAAAATGCATGAAA-TGATATAAAAGTCCCTAGATC
1 TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATCAAATTG-CATCCAAGTCCCTAGATC
* * *
16058 ATAATAGTAAATGACCTAAATGACATCAAAATTTACAAAATGCATCAAAGTCCC
65 ---ATGGAAAATGACCTAAATGACATCAAAATTCACAAAATGCATCAAAGTCCC
* * * * ** *
16112 TAGATCATAGAAAATGACATAAATGACATCAAAATGCATGAAA-TGACATAAAAGTTCCTAGATC
1 TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATCAAATTG-CATCCAAGTCCCTAGATC
* * *
16176 ATGGAAAATGACTTAAATGGCATCAAAATTCACAAAATTACATCCAAA-TCCC
65 ATGGAAAATGACCTAAATGACATCAAAATTCACAAAA-TGCAT-CAAAGTCCC
* * *
16228 TA-ATCACGGTAAATGACCTAAATGACATCAAAATTCA-CAAAATTGCATCCAAGT-CCTACATC
1 TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATC-AAATTGCATCCAAGTCCCTAGATC
* * ** *
16290 ATGGAAAATGACTTAAATGACATCAAAATGCATGAAATGACATAAAAGTCCC
65 ATGGAAAATGACCTAAATGACATCAAAATTCACAAAATG-CATCAAAGTCCC
* * * * *
16342 TAGATCATGGTAAATGACCTAAATAACATCAAAGGTT-A-CAAAATTGTATCCAAATCCCTAGAT
1 TAGATCATGGAAAATGACCTAAATGACATCAAA-ATTCATC-AAATTGCATCCAAGTCCCTAGAT
* * * ** * ** *
16405 CATTGAAAATAACCTAAATGACATCAAAATACATGAAATG-ATATAAAAACTTC
64 CATGGAAAATGACCTAAATGACATCAAAATTCACAAAATGCAT-CAAAGTC-CC
* * * * * * *
16458 TAGATCATGAAAAATAATCTAAATGGCATCAAAATTCATAAAATTACATCCAAGTCCCTAGATGA
1 TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATCAAATTGCATCCAAGTCCCTAGATCA
* *
16523 TGGTAAATGACCTAAATGACATCGAAAT
66 TGGAAAATGACCTAAATGACATCAAAAT
16551 GTGAGAAATC
Statistics
Matches: 550, Mismatches: 101, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
113 4 0.01
114 51 0.09
115 209 0.38
116 179 0.33
117 5 0.01
118 69 0.13
119 33 0.06
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (115 bp):
TAGATCATGGAAAATGACCTAAATGACATCAAAATTCATCAAATTGCATCCAAGTCCCTAGATCA
TGGAAAATGACCTAAATGACATCAAAATTCACAAAATGCATCAAAGTCCC
Found at i:16137 original size:9 final size:10
Alignment explanation
Indices: 16122--16164 Score: 54
Period size: 9 Copynumber: 4.4 Consensus size: 10
16112 TAGATCATAG
16122 AAAATGACAT
1 AAAATGACAT
16132 -AAATGACAT
1 AAAATGACAT
16141 CAAAATG-CAT
1 -AAAATGACAT
*
16151 GAAATGACAT
1 AAAATGACAT
16161 AAAA
1 AAAA
16165 GTTCCTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 14 0.50
10 9 0.32
11 5 0.18
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (10 bp):
AAAATGACAT
Found at i:16147 original size:20 final size:19
Alignment explanation
Indices: 16122--16164 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
16112 TAGATCATAG
16122 AAAATGACAT-AAATGACAT
1 AAAATG-CATGAAATGACAT
16141 CAAAATGCATGAAATGACAT
1 -AAAATGCATGAAATGACAT
16161 AAAA
1 AAAA
16165 GTTCCTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (19 bp):
AAAATGCATGAAATGACAT
Found at i:17065 original size:208 final size:208
Alignment explanation
Indices: 16696--17084 Score: 611
Period size: 208 Copynumber: 1.9 Consensus size: 208
16686 TAATAGTCCT
*
16696 TAATGCACCCTTAAAAATCACTTTCCACCAACAATCATACAAGTATGCATCATATATAATTTTTA
1 TAATGCACCCTTAAAAATCACTTTCCACCAACAAACATACAAGTATGCATCATATATAATTTTTA
* * * * *
16761 CTTAAAAAATGCCTATCAACATGAACATATATGGACTTACCATAATGAATTATGGCATGGTCTTA
66 CTCAAAAAATGCCTAACAACATGAACATACATGGACTTACCATAATGAATTATGGCACGGTCATA
** *
16826 ATCACAATATTCTCATGTAAAGTGAATGGACATATGAATCATTATTATATTCACAATATTCTTAT
131 ATCACAATATTCTCATGTAAAAAGAATGGACATATGAATCATTATCATATTCACAATATTCTTAT
16891 TGCAGCATGGTCA
196 TGCAGCATGGTCA
**
16904 TAAT-CACCCTTAAAAATCACTTTCCATTAACAAACATAC-AGATATGCATCATATATAATTTTT
1 TAATGCACCCTTAAAAATCACTTTCCACCAACAAACATACAAG-TATGCATCATATATAATTTTT
* * *
16967 ACTCAGAAAATGCCTTAACAACATGAACATACATGGACTTACCATCATGAATTGTGGCACGGTCA
65 ACTCAAAAAATGCC-TAACAACATGAACATACATGGACTTACCATAATGAATTATGGCACGGTCA
*
17032 TAATCACAATATTCTCATGTAAAAAGCATGGACATATGAATCATTATCATATT
129 TAATCACAATATTCTCATGTAAAAAGAATGGACATATGAATCATTATCATATT
17085 GCGTAAAAAT
Statistics
Matches: 164, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
206 2 0.01
207 65 0.40
208 97 0.59
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (208 bp):
TAATGCACCCTTAAAAATCACTTTCCACCAACAAACATACAAGTATGCATCATATATAATTTTTA
CTCAAAAAATGCCTAACAACATGAACATACATGGACTTACCATAATGAATTATGGCACGGTCATA
ATCACAATATTCTCATGTAAAAAGAATGGACATATGAATCATTATCATATTCACAATATTCTTAT
TGCAGCATGGTCA
Found at i:19802 original size:20 final size:21
Alignment explanation
Indices: 19760--19811 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
19750 TTCTATGATT
19760 TGTATCGATACAACAAGTCAA
1 TGTATCGATACAACAAGTCAA
* *
19781 TGTATCGATAC-AGAAGTGAA
1 TGTATCGATACAACAAGTCAA
19801 TGTATCGATAC
1 TGTATCGATAC
19812 TAAGGCTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (21 bp):
TGTATCGATACAACAAGTCAA
Found at i:26738 original size:42 final size:42
Alignment explanation
Indices: 26683--26801 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
26673 TTCTTCTCTC
* *
26683 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
26725 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
26767 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
26802 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:26742 original size:12 final size:11
Alignment explanation
Indices: 26716--26791 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
26706 TCTATTATCT
*
26716 CTCCTGTCTCTC
1 CTCCTATCTC-C
26728 CTCCTATCATCC
1 CTCCTATC-TCC
26740 CTCCTATCT--
1 CTCCTATCTCC
*
26749 CTACTATCT--
1 CTCCTATCTCC
*
26758 CTCCTGTCTCTC
1 CTCCTATCTC-C
26770 CTCCTATCATCC
1 CTCCTATC-TCC
*
26782 CTCCTCTCTC
1 CTCCTATCTC
26792 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:26743 original size:24 final size:24
Alignment explanation
Indices: 26707--26792 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
26697 CCTCCTCTCT
* *
26707 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
26731 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
26752 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
26773 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
26793 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:26767 original size:18 final size:18
Alignment explanation
Indices: 26698--26768 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
26688 CCTGTCATCC
* *
26698 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
26716 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
26738 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
26758 CTCCTGTCTCT
1 CTCCTGTCTCT
26769 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:29680 original size:14 final size:13
Alignment explanation
Indices: 29636--29681 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
29626 AAAAGGGAAA
29636 AAAATAAAAAAAT-
1 AAAAT-AAAAAATC
29649 AATAATAAAAAATC
1 AA-AATAAAAAATC
29663 -AAATAAAAAAGTC
1 AAAATAAAAAA-TC
29676 AAAATA
1 AAAATA
29682 TATGACAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.31
13 12 0.41
14 8 0.28
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.17
Consensus pattern (13 bp):
AAAATAAAAAATC
Found at i:31020 original size:13 final size:12
Alignment explanation
Indices: 30977--31048 Score: 56
Period size: 13 Copynumber: 5.7 Consensus size: 12
30967 TTGAGAAATC
30977 TTTGTCAAGAAA
1 TTTGTCAAGAAA
* *
30989 CTTTCATCAAGAACT
1 -TTT-GTCAAGAA-A
31004 TTTGTCAAGAACA
1 TTTGTCAAGAA-A
31017 TTTGTC-AGAAA
1 TTTGTCAAGAAA
* *
31028 CTTTGTCTAGAAT
1 -TTTGTCAAGAAA
31041 TTTGTCAA
1 TTTGTCAA
31049 AAACTTGTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
11 1 0.02
12 17 0.35
13 21 0.43
14 10 0.20
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (12 bp):
TTTGTCAAGAAA
Found at i:31032 original size:12 final size:12
Alignment explanation
Indices: 30970--31059 Score: 51
Period size: 13 Copynumber: 7.0 Consensus size: 12
30960 GCCATTGTTG
30970 AGAAATCTTTGTC
1 AGAAA-CTTTGTC
*
30983 AAGAAACTTTCATC
1 -AGAAACTTT-GTC
30997 A-AGAACTTTTGTC
1 AGA-AAC-TTTGTC
31010 A-AGAACATTTGTC
1 AGA-AAC-TTTGTC
31023 AGAAACTTTGTC
1 AGAAACTTTGTC
*
31035 TAG-AATTTTGTC
1 -AGAAACTTTGTC
*
31047 AAAAACTTGTGTC
1 AGAAACTT-TGTC
31060 GAGACCCTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 19 0.30
13 32 0.51
14 11 0.17
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (12 bp):
AGAAACTTTGTC
Found at i:31032 original size:25 final size:24
Alignment explanation
Indices: 30970--31059 Score: 74
Period size: 27 Copynumber: 3.5 Consensus size: 24
30960 GCCATTGTTG
*
30970 AGAAATCTTTGTCAAGAAACTTTCATC
1 AGAAA-CTTTGTCAAGAAA-TTT-GTC
30997 A-AGAACTTTTGTCAAGAACATTTGTC
1 AGA-AAC-TTTGTCAAGAA-ATTTGTC
* *
31023 AGAAACTTTGTCTAGAATTTTGTC
1 AGAAACTTTGTCAAGAAATTTGTC
*
31047 AAAAACTTGTGTC
1 AGAAACTT-TGTC
31060 GAGACCCTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
24 13 0.24
25 14 0.26
26 8 0.15
27 18 0.33
28 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (24 bp):
AGAAACTTTGTCAAGAAATTTGTC
Found at i:31668 original size:31 final size:31
Alignment explanation
Indices: 31625--31805 Score: 222
Period size: 31 Copynumber: 5.8 Consensus size: 31
31615 GAGTAATCCA
*
31625 AAAGCCCACACGAGTTGGTGGCAACCTTTTC
1 AAAGTCCACACGAGTTGGTGGCAACCTTTTC
31656 AAAGTCCACACGAGTTGGTGGCAACCTTTTC
1 AAAGTCCACACGAGTTGGTGGCAACCTTTTC
* *
31687 AAAGTCCACACAAGTTGGTGGTAACCTTTTC
1 AAAGTCCACACGAGTTGGTGGCAACCTTTTC
* * *
31718 AGAGACCACACGAGTTGGTGGC-ACCATGGTT-
1 AAAGTCCACACGAGTTGGTGGCAACC-T-TTTC
* * *
31749 AAAGTCCACATGAGTTGGTGGCAACTTTTTT
1 AAAGTCCACACGAGTTGGTGGCAACCTTTTC
* * *
31780 AAAGTCCACACAAGTCGATGGCAACC
1 AAAGTCCACACGAGTTGGTGGCAACC
31806 AAACCTTTTT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
30 5 0.04
31 119 0.93
32 4 0.03
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGTCCACACGAGTTGGTGGCAACCTTTTC
Found at i:32734 original size:15 final size:15
Alignment explanation
Indices: 32714--32743 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32704 TTTTTTTTTC
32714 AAGAATACAAAAAGA
1 AAGAATACAAAAAGA
32729 AAGAATACAAAAAGA
1 AAGAATACAAAAAGA
32744 GAGGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.07, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAATACAAAAAGA
Found at i:33553 original size:42 final size:42
Alignment explanation
Indices: 33492--33623 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
33482 TAGCCCTCAA
* *
33492 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * *
33534 AGAGATAGTAGATATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * *
33576 AGAGATATTAGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
33619 A-AGAT
1 AGAGAT
33624 GGAAGAGTGA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 71 0.91
43 7 0.09
ACGTcount: A:0.44, C:0.02, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:33582 original size:21 final size:21
Alignment explanation
Indices: 33516--33582 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
33506 GAGGAGGGAT
*
33516 GATAGGAGGAGAGACAAGAGA
1 GATAGGAGGAGAGACAGGAGA
* * * *
33537 GATAGTA-GATATAGGAGG-GA
1 GATAGGAGGAGAGA-CAGGAGA
33557 TGATAGGAGGAGAGACAGGAGA
1 -GATAGGAGGAGAGACAGGAGA
33579 GATA
1 GATA
33583 TTAGAGAGAG
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
20 6 0.18
21 21 0.64
22 6 0.18
ACGTcount: A:0.43, C:0.03, G:0.42, T:0.12
Consensus pattern (21 bp):
GATAGGAGGAGAGACAGGAGA
Found at i:42201 original size:100 final size:102
Alignment explanation
Indices: 42091--42376 Score: 283
Period size: 100 Copynumber: 2.8 Consensus size: 102
42081 TGACAAAGAA
* * * * * ** * *
42091 AGAGTTCAAATTTTGATAAATTTTGAAAAGTAAGGTTGGAGTATCTCCTTGAAAGGTT-GGGGTC
1 AGAGTTCAAATCTAGATAAATTTTGAAGAGCAAGGTTGGAGTATCCCCTCAAAAAGTTAGGGGTA
* *
42155 GTAGTATCC-CTATGGATAACAAATAATTTTAATAAA-G
66 G-AGTATCCTC-ATGAATAACAAATAATTTTAACAAAGG
* ** *
42192 -GAGTTCAAATCTAGATAAATTCTGAAGAGCGGGGTTGGAGTATCCCCTCAAAAAGTTAGGGTTA
1 AGAGTTCAAATCTAGATAAATTTTGAAGAGCAAGGTTGGAGTATCCCCTCAAAAAGTTAGGGGTA
* * *
42256 GAGTATCTTCGTGAATAACAAATAATTTTGACAAAGG
66 GAGTATCCTCATGAATAACAAATAATTTTAACAAAGG
** ** * * * *
42293 AAGAGTTCAAATCTAGATAAATTTTGAAGAGCAAGGTTGGAGTATCCTTTTGAAAGGTCAAGGTT
1 -AGAGTTCAAATCTAGATAAATTTTGAAGAGCAAGGTTGGAGTATCCCCTCAAAAAGTTAGGGGT
42358 AGAGTATCCTCATGAATAA
65 AGAGTATCCTCATGAATAA
42377 ATTTTGATAT
Statistics
Matches: 150, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
100 73 0.49
101 7 0.05
103 70 0.47
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (102 bp):
AGAGTTCAAATCTAGATAAATTTTGAAGAGCAAGGTTGGAGTATCCCCTCAAAAAGTTAGGGGTA
GAGTATCCTCATGAATAACAAATAATTTTAACAAAGG
Found at i:42358 original size:103 final size:101
Alignment explanation
Indices: 42022--42376 Score: 306
Period size: 103 Copynumber: 3.5 Consensus size: 101
42012 TCAAAAAAGG
* * * * * * * * **
42022 GGTTGGAGTATCCCCTT-AGAAGATAAGGTTGGAGTATCCCTGTGGATAACAAAAAAACTTGACA
1 GGTTGGAGTATCCTCTTGA-AAGGTAGGGTTAGAGTATCTC-ATGAATAACAAATAATTTTGACA
* * * * *
42086 AAGAAAGAGTTCAAATTTTGATAAATTTTGAAAAGTAA
64 AAGGAAGAGTTCAAATCTAGATAAATTTTGAAGAGCAA
* * * * * * *
42124 GGTTGGAGTAT-CTCCTTGAAAGGTTGGGGTCGTAGTATCCCTATGGATAACAAATAATTTTAAT
1 GGTTGGAGTATCCT-CTTGAAAGGTAGGGTTAG-AGTATCTC-ATGAATAACAAATAATTTTGAC
* **
42188 AAA-G--GAGTTCAAATCTAGATAAATTCTGAAGAGCGG
63 AAAGGAAGAGTTCAAATCTAGATAAATTTTGAAGAGCAA
* ** * *
42224 GGTTGGAGTATCCCCTCAAAAAGTTAGGGTTAGAGTATCTTCGTGAATAACAAATAATTTTGACA
1 GGTTGGAGTATCCTCT-TGAAAGGTAGGGTTAGAGTATC-TCATGAATAACAAATAATTTTGACA
42289 AAGGAAGAGTTCAAATCTAGATAAATTTTGAAGAGCAA
64 AAGGAAGAGTTCAAATCTAGATAAATTTTGAAGAGCAA
* *
42327 GGTTGGAGTATCCTTTTGAAAGGTCAAGGTTAGAGTATCCTCATGAATAA
1 GGTTGGAGTATCCTCTTGAAAGGT-AGGGTTAGAGTAT-CTCATGAATAA
42377 ATTTTGATAT
Statistics
Matches: 200, Mismatches: 42, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
100 65 0.32
101 14 0.07
102 27 0.14
103 93 0.47
104 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (101 bp):
GGTTGGAGTATCCTCTTGAAAGGTAGGGTTAGAGTATCTCATGAATAACAAATAATTTTGACAAA
GGAAGAGTTCAAATCTAGATAAATTTTGAAGAGCAA
Found at i:45484 original size:777 final size:775
Alignment explanation
Indices: 43990--45534 Score: 2213
Period size: 777 Copynumber: 2.0 Consensus size: 775
43980 ACTGACAAAC
* *
43990 TAGCAAGATCCAACTTGCTTGCTGAGGCTGCCAATGTAAATGTAAATGTAATTTCTGCCTTTTCT
1 TAGCAAGATCCAACTTGCTTGCTGAAGCTGCAAATGTAAATGTAAATGTAATTTCTGCCTTTTCT
* * * * *
44055 AAGCTATAAACTAGCAAGAAAGGAAAGAAAAAGGAGGTTAGCTGATTATGGTATGAGGGAAGGCA
66 AAGCTATAAACTAGCAAGAAAGAAAAAAAAAAGGAGGCTAGCTGATTATGGTATGAGAGAAGACA
*
44120 AATTTGAGGTGTGAAGTTGTTGGAAGCCAAGTGTTTTGGGGGGTGTTTCCTAAGGGGTGCTAGGA
131 AATTTGAGGTGTGAAGTTGTTGGAAGCCAAGTATTTTGGGGGGTGTTTCCTAAGGGGTGCTAGGA
* *
44185 AGCTACAGGATTTTTGTTTTGTTGAGATGGAGGAGTGTTTTAGGGAGGTTAAAAGTTGCTAAAAA
196 AGCTACAGGATTTTTGTTTTGTTAAGATGGAGGAGTGTTTTAGGGAGGTTAAAAGCTGCTAAAAA
* * ** * * *
44250 AAAGTCTTTTGCTAAGATCTGATTGTGCCATTTATGGGCAACATTTTGGAGCAAAAAATGGGGGC
261 AAAATCCTTCACTAAGATCTGATTGTACCATTTATAGGCAACATTTTGGAGCAAAAAATGAGGGC
44315 ATTTTGGCCTTTTCTTCAAACAATAATAGTGGTTGTTGGCTACTGAAGTGATTGGGGCAAAGTGG
326 ATTTTGGCCTTTTCTTCAAACAATAATAGTGGTTGTTGGCTACTGAAGTGATTGGGGCAAAGTGG
* *
44380 TCAGAATTTGGTGATGAAATCAGCTGATGGAGTGGTGGTTAGTTGCTGCCAGCAGTTGAAAGTGG
391 TCAGAATTTGGTGATGAAATCAGCTGATGGAGTGGTGGTTAGTTGCTGCCAACAGCTGAAAGTGG
* * *
44445 TTGCTACCATGGGAACAATATCCATTTAATGTGAATGTCTTTATTTGATTTGATTTTGACCAAAA
456 TTGCTACCATGGGAACAATATCCATTCAATGTGAATGTCCTTATTTGATTTGATTTTAACCAAAA
** * * * * *
44510 AAGCAAACAAAAAAAATGTTATAATTTGATCAGCACCCTAAAATTTGAGTTTGGTACTTATTTTG
521 AAAAAAACAAAAAAAATGTTATAATCTGATCAGCACCCTAAAATCTGAGTTTCGTACATATTCTG
** ** * * *
44575 ATGATTTGAGACATAAAAATCATGTTAAAATTGGATTTGAAATCCAATAGAGCTAACTCCCGAAA
586 ATGATTTGAGACATAAAAATCACATTAAAATCAGATTTGAAATCCAATAGAACCAACTCCAGAAA
* ** **
44640 TACCTTTCCTCACCCTCGGATGTTAAAGAATTGGTCTGTGTACTGTCACATGCTTCCCAAACTAC
651 TACCTTTCCTCACCCTCGGATGTTAAAGAATTGGCCTGTACACCATCACATGCTTCCCAAACTAC
* * *
44705 CTTGAATTGTGTTCTTTGATGCC-TCGAATGGAGGCCCGGACAAACTAAGGTGTATACAAT
716 CTTGAATTGTGTCCTTTAATGCCTTC-AATGGAGGCCCGAACAAACTAAGGTGTATACAAT
* *
44765 TAGCAAGATCCGACTTGCTTGCTGAAGCTGCAAATGTAAATGTAAATGTAATTTCTTCCTTTTCT
1 TAGCAAGATCCAACTTGCTTGCTGAAGCTGCAAATGTAAATGTAAATGTAATTTCTGCCTTTTCT
* ** * *
44830 AGGCTATAAACTAGCAAGAAAAGAAAAAAAAAATTAGGCTAGTTGATTATGGTCTGAGAGAAGAC
66 AAGCTATAAACTAGCAAG-AAAGAAAAAAAAAAGGAGGCTAGCTGATTATGGTATGAGAGAAGAC
* *
44895 AAATTTGAGGTGTTAAGTTGTTGGAAGCTAAGTATTTT-GGGGGTGTTTCCTAAGGGGTGCTAGG
130 AAATTTGAGGTGTGAAGTTGTTGGAAGCCAAGTATTTTGGGGGGTGTTTCCTAAGGGGTGCTAGG
* * * *
44959 GAGCTACGGGATTTTTGTTTTGTTAAGATGGAGGAGTGTTTTGGGGAGGTTGAAAGCTGCTAAAA
195 AAGCTACAGGATTTTTGTTTTGTTAAGATGGAGGAGTGTTTTAGGGAGGTTAAAAGCTGCT--AA
* * * *
45024 AAAAAAATCCTTCACTGAGATCTGATTGTACC-TTTCATAGGTAATATTTTGGGGCAAAAAATGA
258 AAAAAAATCCTTCACTAAGATCTGATTGTACCATTT-ATAGGCAACATTTTGGAGCAAAAAATGA
* * * * * *
45088 GGGCATTTTGTCCTTTTCTTCAAACAATAGTGGTGGTTGTTGGCTGCTGAAGTGATTGGGGGAAG
322 GGGCATTTTGGCCTTTTCTTCAAACAATAATAGTGGTTGTTGGCTACTGAAGTGATTGGGGCAAA
45153 GTGGTCAGAATTTGGTGATGAAATCAGCTGATGGAGTGGGTGGTTAGTTGCTGCCAACAGCTGAA
387 GTGGTCAGAATTTGGTGATGAAATCAGCTGATGGAGT-GGTGGTTAGTTGCTGCCAACAGCTGAA
* * *
45218 AGTGGTTGCTGCCATGGGAACCATATCCGTTCAATGTGAATGTCCTTATTTGATTTGATTTTAAC
451 AGTGGTTGCTACCATGGGAACAATATCCATTCAATGTGAATGTCCTTATTTGATTTGATTTTAAC
* * *
45283 CAAAAAAAAAAAC-AAAAAAATGTTGTAATCTGATCAGCATCCTTAAATCTGAGTTTCGTACATA
516 CAAAAAAAAAAACAAAAAAAATGTTATAATCTGATCAGCACCCTAAAATCTGAGTTTCGTACATA
* * * * *
45347 TTCTGATGATTTGTGACATAAAAATCACATTCAAATCAGATTTGAAGTCCAATGGAACCAGCTCT
581 TTCTGATGATTTGAGACATAAAAATCACATTAAAATCAGATTTGAAATCCAATAGAACCAACTC-
**
45412 CAG-AATACCTTTCCTCACCCTCGGATGTTAAA-ACATTGGCCTGTACACCATTGCATGC-TCCC
645 CAGAAATACCTTTCCTCACCCTCGGATGTTAAAGA-ATTGGCCTGTACACCATCACATGCTTCCC
* * *
45474 TGATCTACCTTGAATTGTGTCCTTTAATGCCTTCAATGGAGGCTCGAACAAACTAAGGTGT
709 -AAACTACCTTGAATTGTGTCCTTTAATGCCTTCAATGGAGGCCCGAACAAACTAAGGTGT
45535 CTATAACTAC
Statistics
Matches: 678, Mismatches: 83, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
775 159 0.23
776 80 0.12
777 340 0.50
778 99 0.15
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (775 bp):
TAGCAAGATCCAACTTGCTTGCTGAAGCTGCAAATGTAAATGTAAATGTAATTTCTGCCTTTTCT
AAGCTATAAACTAGCAAGAAAGAAAAAAAAAAGGAGGCTAGCTGATTATGGTATGAGAGAAGACA
AATTTGAGGTGTGAAGTTGTTGGAAGCCAAGTATTTTGGGGGGTGTTTCCTAAGGGGTGCTAGGA
AGCTACAGGATTTTTGTTTTGTTAAGATGGAGGAGTGTTTTAGGGAGGTTAAAAGCTGCTAAAAA
AAAATCCTTCACTAAGATCTGATTGTACCATTTATAGGCAACATTTTGGAGCAAAAAATGAGGGC
ATTTTGGCCTTTTCTTCAAACAATAATAGTGGTTGTTGGCTACTGAAGTGATTGGGGCAAAGTGG
TCAGAATTTGGTGATGAAATCAGCTGATGGAGTGGTGGTTAGTTGCTGCCAACAGCTGAAAGTGG
TTGCTACCATGGGAACAATATCCATTCAATGTGAATGTCCTTATTTGATTTGATTTTAACCAAAA
AAAAAAACAAAAAAAATGTTATAATCTGATCAGCACCCTAAAATCTGAGTTTCGTACATATTCTG
ATGATTTGAGACATAAAAATCACATTAAAATCAGATTTGAAATCCAATAGAACCAACTCCAGAAA
TACCTTTCCTCACCCTCGGATGTTAAAGAATTGGCCTGTACACCATCACATGCTTCCCAAACTAC
CTTGAATTGTGTCCTTTAATGCCTTCAATGGAGGCCCGAACAAACTAAGGTGTATACAAT
Found at i:46310 original size:52 final size:52
Alignment explanation
Indices: 46226--46357 Score: 176
Period size: 52 Copynumber: 2.5 Consensus size: 52
46216 GTGCTAATTC
* **
46226 AAGGTCAGCAACATTGGACTTAAGGTTAGCAAAGGTACCAATA-TGCTGATCT
1 AAGGCCAGCAACATTGGACTTAAGGACAGCAAAGGTACCAA-AGTGCTGATCT
* *
46278 AAGGCTAGCAACATTGGTCTTAAGGACAGCAAAGGTACCAAAGTGCTGATCT
1 AAGGCCAGCAACATTGGACTTAAGGACAGCAAAGGTACCAAAGTGCTGATCT
* * *
46330 AAGGCCAACGACATTGGACTTAAAGACA
1 AAGGCCAGCAACATTGGACTTAAGGACA
46358 ATAAGGGTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
51 1 0.01
52 68 0.99
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (52 bp):
AAGGCCAGCAACATTGGACTTAAGGACAGCAAAGGTACCAAAGTGCTGATCT
Found at i:46479 original size:52 final size:51
Alignment explanation
Indices: 46375--46481 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 51
46365 TGCCAATGTT
* * * *
46375 TGATTCATGACCAGCAACATTGGTTTTAGAGATGAAAAGGTGCCAATGTGC
1 TGATTCATGACCAGCAACACTGGATTTAGAAATGAAAAGGTGCCAATATGC
*
46426 TGATTCATAGA-CAGCGACACTGGATTTAGAAATGACAAAGGTGCCAATATGC
1 TGATTCAT-GACCAGCAACACTGGATTTAGAAATGA-AAAGGTGCCAATATGC
46478 TGAT
1 TGAT
46482 CCAAGGCCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
51 28 0.57
52 21 0.43
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (51 bp):
TGATTCATGACCAGCAACACTGGATTTAGAAATGAAAAGGTGCCAATATGC
Found at i:46518 original size:52 final size:52
Alignment explanation
Indices: 46308--46861 Score: 313
Period size: 52 Copynumber: 10.7 Consensus size: 52
46298 TAAGGACAGC
* * * * * **
46308 AAAGGTACCAAAGTGCTGATCTAAGGCCAACGACATT-GGACTTAAAGACAAT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGG-TTTAAAGATGAT
* * * * * *** *
46360 AAGGGTGCCAATGT-TTGATTCATGACCAGCAACATT-GGTTTTAGAGATGA-
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGG-TTTAAAGATGAT
* * ** * *
46410 AAAGGTGCCAATGTGCTGATTCATA-GACAGCGACACT-GGATTTAGAA-ATGAC
1 AAAGGTGCCAATGTGCTGATCCA-AGGCCAATGACATTAGG-TTTA-AAGATGAT
* * * *
46462 AAAGGTGCCAATATGCTGATCCAAGGCCATTGACATTTGGCTTAAAGATGAT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGGTTTAAAGATGAT
* ** * * * *
46514 AAAGGTGCCAATGTGCTAATTTATGGCTAGTGACATTA-GTTTAGAGATGAT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGGTTTAAAGATGAT
* * * * *
46565 AAAGGTGCCAATGTGCTGAT-TAATGGCCAATAACACTAGTTTTAGAA-ATGAG
1 AAAGGTGCCAATGTGCTGATCCAA-GGCCAATGACATTAGGTTTA-AAGATGAT
* * ** * * * *
46617 AAAGTTGCCAATTTATTGATCTAAGGCCAACGACGTTAGGCTTAAAGATGAT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGGTTTAAAGATGAT
** * * * **
46669 AAAGGTGTTAATGTGTTGATTCATA-ACCAATGACATTAACTTTAAAGATGAT
1 AAAGGTGCCAATGTGCTGATCCA-AGGCCAATGACATTAGGTTTAAAGATGAT
* * * * ** * *
46721 AAAGGTGCTAATGTGCTGATTCATGGCTAGCGACATTAGTTTTAAAGATAAT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGGTTTAAAGATGAT
* * * * ** * *
46773 AAAGGTGCCAATCTGCTGAT-TAATGGTCAACGACACCAGTTTTAAAAATGAT
1 AAAGGTGCCAATGTGCTGATCCAA-GGCCAATGACATTAGGTTTAAAGATGAT
*
46825 AAAGGTGCCAATGTGCTGATCCAAGGCCAAGGACATT
1 AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATT
46862 GAGCTTGGTA
Statistics
Matches: 384, Mismatches: 102, Indels: 32
0.74 0.20 0.06
Matches are distributed among these distances:
50 15 0.04
51 95 0.25
52 265 0.69
53 9 0.02
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAGGTGCCAATGTGCTGATCCAAGGCCAATGACATTAGGTTTAAAGATGAT
Found at i:46637 original size:155 final size:156
Alignment explanation
Indices: 46323--46841 Score: 438
Period size: 155 Copynumber: 3.3 Consensus size: 156
46313 TACCAAAGTG
* ** * * * *
46323 CTGATCTAAGGCCAACGACATT-GGACTTAAAGACAATAAGGGTGCCAATGT-TTGATTCATGAC
1 CTGATCCAAGGCCAACGACATTAGG-CTTAAAGATGATAAAGGTGCCAATGTGCTAATTCATAAC
*** *** * * * * *
46386 CAGCAACATTGGTTTTAGAGATGA-AAAGGTGCCAATGTGCTGATTCATAGACAGCGACACTGGA
65 CAATGACATTAACTTTAGAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACAACACTAGA
*
46450 TTTAGAAATGACAAAGGTGCCAATATG
130 TTTAGAAATGACAAAGGTGCCAATATA
** * * ** *
46477 CTGATCCAAGGCCATTGACATTTGGCTTAAAGATGATAAAGGTGCCAATGTGCTAATTTATGGCT
1 CTGATCCAAGGCCAACGACATTAGGCTTAAAGATGATAAAGGTGCCAATGTGCTAATTCATAACC
* * * * *
46542 AGTGACATT-AGTTTAGAGATGATAAAGGTGCCAATGTGCTGATTAATGGCCAATAACACTAGTT
66 AATGACATTAACTTTAGAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACAACACTAGAT
* * *
46606 TTAGAAATGAGAAAGTTGCCAATTTA
131 TTAGAAATGACAAAGGTGCCAATATA
* * * ** * *
46632 TTGATCTAAGGCCAACGACGTTAGGCTTAAAGATGATAAAGGTGTTAATGTGTTGATTCATAACC
1 CTGATCCAAGGCCAACGACATTAGGCTTAAAGATGATAAAGGTGCCAATGTGCTAATTCATAACC
* * * * * * *
46697 AATGACATTAACTTTAAAGATGATAAAGGTGCTAATGTGCTGATTCATGGCTAGCGACATTAGTT
66 AATGACATTAACTTTAGAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACAACACTAGAT
* * * *
46762 TTA-AAGATAATAAAGGTGCCAATCTG
131 TTAGAA-ATGACAAAGGTGCCAATATA
* * ** ** *
46788 CTGAT-TAATGGTCAACGACACCAGTTTTAAAAATGATAAAGGTGCCAATGTGCT
1 CTGATCCAA-GGCCAACGACATTAGGCTTAAAGATGATAAAGGTGCCAATGTGCT
46842 GATCCAAGGC
Statistics
Matches: 292, Mismatches: 67, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
154 53 0.18
155 136 0.47
156 103 0.35
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (156 bp):
CTGATCCAAGGCCAACGACATTAGGCTTAAAGATGATAAAGGTGCCAATGTGCTAATTCATAACC
AATGACATTAACTTTAGAGATGATAAAGGTGCCAATGTGCTGATTCATGGCCAACAACACTAGAT
TTAGAAATGACAAAGGTGCCAATATA
Found at i:46860 original size:104 final size:103
Alignment explanation
Indices: 46308--46861 Score: 359
Period size: 104 Copynumber: 5.4 Consensus size: 103
46298 TAAGGACAGC
* * * * * ** *
46308 AAAGGTACCAAAGTGCTGATCTAAGGCCAA-CGACATTGGACTTAAAGACAATAAGGGTGCCAAT
1 AAAGGTGCCAATGTGCTGATCCAAGG-CAAGCGACATTAG-TTTAAAGATGATAAAGGTGCCAAT
* * * *** * * * *
46372 GT-TTGATTCATGACCAGCAACATTGGTTTTAGAGATGA-
64 GTGCTGATTAATGGCCAATGACACTAGTTTTAAAAATGAT
* * * * *
46410 AAAGGTGCCAATGTGCTGATTCATAGAC-AGCGACACTGGATTTAGAA-ATGACAAAGGTGCCAA
1 AAAGGTGCCAATGTGCTGATCCA-AGGCAAGCGACATTAG-TTTA-AAGATGATAAAGGTGCCAA
* * * * * ** *
46473 TATGCTGATCCAA-GGCCATTGACATTTGGCTTAAAGATGAT
63 TGTGCTGAT-TAATGGCCAATGACACTAGTTTTAAAAATGAT
* ** * * * *
46514 AAAGGTGCCAATGTGCTAATTTATGGCTAGTGACATTAGTTTAGAGATGATAAAGGTGCCAATGT
1 AAAGGTGCCAATGTGCTGATCCAAGGCAAGCGACATTAGTTTAAAGATGATAAAGGTGCCAATGT
* * *
46579 GCTGATTAATGGCCAATAACACTAGTTTTAGAAATGAG
66 GCTGATTAATGGCCAATGACACTAGTTTTAAAAATGAT
* * ** * * * **
46617 AAAGTTGCCAATTTATTGATCTAAGGCCAA-CGACGTTAGGCTTAAAGATGATAAAGGTGTTAAT
1 AAAGGTGCCAATGTGCTGATCCAAGG-CAAGCGACATTA-GTTTAAAGATGATAAAGGTGCCAAT
* * ** * ** *
46681 GTGTTGATTCATAACCAATGACATTAACTTTAAAGATGAT
64 GTGCTGATTAATGGCCAATGACACTAGTTTTAAAAATGAT
* * * * * *
46721 AAAGGTGCTAATGTGCTGATTCATGGCTAGCGACATTAGTTTTAAAGATAATAAAGGTGCCAATC
1 AAAGGTGCCAATGTGCTGATCCAAGGCAAGCGACATTAG-TTTAAAGATGATAAAGGTGCCAATG
* * *
46786 TGCTGATTAATGGTCAACGACACCAGTTTTAAAAATGAT
65 TGCTGATTAATGGCCAATGACACTAGTTTTAAAAATGAT
46825 AAAGGTGCCAATGTGCTGATCCAAGGCCAAG-GACATT
1 AAAGGTGCCAATGTGCTGATCCAAGG-CAAGCGACATT
46862 GAGCTTGGTA
Statistics
Matches: 340, Mismatches: 98, Indels: 26
0.73 0.21 0.06
Matches are distributed among these distances:
101 1 0.00
102 49 0.14
103 103 0.30
104 184 0.54
105 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (103 bp):
AAAGGTGCCAATGTGCTGATCCAAGGCAAGCGACATTAGTTTAAAGATGATAAAGGTGCCAATGT
GCTGATTAATGGCCAATGACACTAGTTTTAAAAATGAT
Found at i:47134 original size:31 final size:31
Alignment explanation
Indices: 47076--47196 Score: 116
Period size: 32 Copynumber: 3.8 Consensus size: 31
47066 TCGCTAGCTT
* * * *
47076 GTGTAGGCTTTGAGAAAGGATGCCACCAACTC
1 GTGTGGGCTTT-AAAAAGGTTGCCACCAACTA
* *
47108 GTGTGGGCTTTGAAGAGGTTGCCACCAACTA
1 GTGTGGGCTTTAAAAAGGTTGCCACCAACTA
* * *
47139 GTGTGGGCTTAAAAAGAGGTTGCTACCAACTT
1 GTGTGGGCTTTAAAA-AGGTTGCCACCAACTA
* *
47171 GTATGGACTTTTAAAAAGGTTGCCAC
1 GTGTGGGC-TTTAAAAAGGTTGCCAC
47197 TGATTTATGG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
31 27 0.38
32 39 0.54
33 6 0.08
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGTGGGCTTTAAAAAGGTTGCCACCAACTA
Found at i:47295 original size:30 final size:31
Alignment explanation
Indices: 47244--47309 Score: 107
Period size: 30 Copynumber: 2.1 Consensus size: 31
47234 TGAACTTTGA
*
47244 GGAAGGATTGTGCATCAACTTGTGTGGACTTT
1 GGAAGGATTGTGCA-CAACTTGTATGGACTTT
47276 GGAAGGATTGTGC-CAACTTGTATGGACTTT
1 GGAAGGATTGTGCACAACTTGTATGGACTTT
47306 GGAA
1 GGAA
47310 AGGGTGCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 20 0.61
32 13 0.39
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (31 bp):
GGAAGGATTGTGCACAACTTGTATGGACTTT
Found at i:47333 original size:123 final size:121
Alignment explanation
Indices: 47164--47453 Score: 297
Period size: 123 Copynumber: 2.4 Consensus size: 121
47154 GAGGTTGCTA
** * * * * *
47164 CCAACTTGTATGGACTTTTAAAAAGGTTGCCACTGATTTATGGACTTTGAGAAATGAT-GCCACT
1 CCAACTTGTATGGAC-TTTGGAAAGGGTGCCACTGACTTGTGGACTTAGA-AAAGGATGGCCACT
* * *
47228 AACTTCT-GAACTTTGAGGAAGGATTGTG-CA-TCAACTTGTGTGGACTTTGGAAGGATTGTG
64 AACTTCTAG-ACTTTGAAG-AGGATTGTGCCACT-AACTTGTGTGGACTTTGAAAAGA--GTG
* * *
47288 CCAACTTGTATGGACTTTGGAAAGGGTGCCATTGACTTGTAGACTTAGAAAAGGGTGGCCACTAA
1 CCAACTTGTATGGACTTTGGAAAGGGTGCCACTGACTTGTGGACTTAGAAAAGGATGGCCACTAA
* *
47353 CTTGTAGACTTTGAAGAGGATTGTGCCACTGACTTGTGTGGACTTTGAAAAGAGTG
66 CTTCTAGACTTTGAAGAGGATTGTGCCACTAACTTGTGTGGACTTTGAAAAGAGTG
*
47409 CCATTGACTTG--TGGACTTTGG-AAGGGTGCCACTAACTTGTGGACT
1 CCA---ACTTGTATGGACTTTGGAAAGGGTGCCACTGACTTGTGGACT
47454 CTGAAACGAT
Statistics
Matches: 141, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
121 27 0.19
122 24 0.17
123 68 0.48
124 22 0.16
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (121 bp):
CCAACTTGTATGGACTTTGGAAAGGGTGCCACTGACTTGTGGACTTAGAAAAGGATGGCCACTAA
CTTCTAGACTTTGAAGAGGATTGTGCCACTAACTTGTGTGGACTTTGAAAAGAGTG
Found at i:47338 original size:28 final size:28
Alignment explanation
Indices: 47298--47459 Score: 144
Period size: 28 Copynumber: 5.4 Consensus size: 28
47288 CCAACTTGTA
*
47298 TGGACTTTGGAAAGGGTGCCATTGACTTG
1 TGGACTTT-GAAAGGGTGCCACTGACTTG
* * *
47327 TAGACTTAGAAAAGGGTGGCCACTAACTTG
1 TGGACTTTG-AAAGGGT-GCCACTGACTTG
*
47357 TAGACTTTGAAGAGGATTGTGCCACTGACTTGTG
1 TGGACTTTGAA-AGG---GTGCCACTGAC-T-TG
* *
47391 TGGACTTTGAAAAGAGTGCCATTGACTTG
1 TGGACTTTG-AAAGGGTGCCACTGACTTG
* *
47420 TGGACTTTGGAAGGGTGCCACTAACTTG
1 TGGACTTTGAAAGGGTGCCACTGACTTG
*
47448 TGGACTCTGAAA
1 TGGACTTTGAAA
47460 CGATTTGGTT
Statistics
Matches: 109, Mismatches: 15, Indels: 19
0.76 0.10 0.13
Matches are distributed among these distances:
28 26 0.24
29 26 0.24
30 22 0.20
31 10 0.09
32 8 0.07
33 3 0.03
34 12 0.11
35 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
TGGACTTTGAAAGGGTGCCACTGACTTG
Found at i:47395 original size:93 final size:87
Alignment explanation
Indices: 47270--47464 Score: 246
Period size: 93 Copynumber: 2.2 Consensus size: 87
47260 AACTTGTGTG
* * *
47270 GACTTTGGAAGGATTGTGCCAACTTGTATGGACTTTGGAAAGGGTGCCATTGACTTGTAGACTTA
1 GACTTTGAAAGGATTGTGCCAACTTGTATGGACTTTGAAAAGAGTGCCATTGACTTGTAGACTTA
47335 GAAAAGGGTGGCCACTAACTTGTA
66 G-AAAGGGT-GCCACTAACTTGTA
* *
47359 GACTTTGAAGAGGATTGTGCCACTGACTTGTGTGGACTTTGAAAAGAGTGCCATTGACTTGTGGA
1 GACTTTGAA-AGGATTGTGCCA---ACTTGTATGGACTTTGAAAAGAGTGCCATTGACTTGTAGA
* * *
47424 CTTTGGAAGGGTGCCACTAACTTGTG
62 CTTAGAAAGGGTGCCACTAACTTGTA
* *
47450 GACTCTGAAACGATT
1 GACTTTGAAAGGATT
47465 TGGTTAACAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
89 8 0.09
90 17 0.18
91 21 0.23
92 6 0.07
93 40 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (87 bp):
GACTTTGAAAGGATTGTGCCAACTTGTATGGACTTTGAAAAGAGTGCCATTGACTTGTAGACTTA
GAAAGGGTGCCACTAACTTGTA
Found at i:47417 original size:31 final size:29
Alignment explanation
Indices: 47298--47459 Score: 137
Period size: 29 Copynumber: 5.4 Consensus size: 29
47288 CCAACTTGTA
* * *
47298 TGGACTTTGGAAAGGGTGCCATTGACTTG
1 TGGACTTTGAAAAGAGTGCCACTGACTTG
* * * *
47327 TAGACTTAGAAAAGGGTGGCCACTAACTTG
1 TGGACTTTGAAAAGAGT-GCCACTGACTTG
* *
47357 TAGACTTTGAAGAGGATTGTGCCACTGACTTGTG
1 TGGACTTTGAA-AAGA--GTGCCACTGAC-T-TG
*
47391 TGGACTTTGAAAAGAGTGCCATTGACTTG
1 TGGACTTTGAAAAGAGTGCCACTGACTTG
* * *
47420 TGGACTTTG-GAAGGGTGCCACTAACTTG
1 TGGACTTTGAAAAGAGTGCCACTGACTTG
*
47448 TGGACTCTGAAA
1 TGGACTTTGAAA
47460 CGATTTGGTT
Statistics
Matches: 108, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
28 23 0.21
29 26 0.24
30 21 0.19
31 12 0.11
32 8 0.07
33 6 0.06
34 12 0.11
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGACTTTGAAAAGAGTGCCACTGACTTG
Found at i:50144 original size:21 final size:20
Alignment explanation
Indices: 50112--50154 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
50102 AGTCACATTT
50112 TGCCTTCATGTATTGATACA
1 TGCCTTCATGTATTGATACA
50132 TGCCTTCCATGTATTGATACA
1 TGCCTT-CATGTATTGATACA
50153 TG
1 TG
50155 GTCCCAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (20 bp):
TGCCTTCATGTATTGATACA
Found at i:50227 original size:20 final size:20
Alignment explanation
Indices: 50190--50243 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
50180 TTCTACAATT
50190 TGTATCGATACAATAAGTGAA
1 TGTATCGATAC-ATAAGTGAA
50211 TGTATCGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
* *
50231 TTTATTGATACAT
1 TGTATCGATACAT
50244 GTCTAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:50369 original size:51 final size:53
Alignment explanation
Indices: 50314--50446 Score: 182
Period size: 51 Copynumber: 2.6 Consensus size: 53
50304 TATCAACACG
*
50314 TTTTCATTGTATCGATACATTTTGGGTTTTA-AACCCAAATGTA-TCATACAT
1 TTTTCATTGTATCGATACATTCTGGGTTTTATAACCCAAATGTATTCATACAT
* * *
50365 TTTTCATTGTATCGATACATTCTAGG-TTTATAACCCAAATGTATTGATGCAT
1 TTTTCATTGTATCGATACATTCTGGGTTTTATAACCCAAATGTATTCATACAT
* * *
50417 TATTCATTGTATCAATATATTCTGGGTTTT
1 TTTTCATTGTATCGATACATTCTGGGTTTT
50447 TGACCAAATT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
50 4 0.06
51 36 0.51
52 28 0.39
53 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (53 bp):
TTTTCATTGTATCGATACATTCTGGGTTTTATAACCCAAATGTATTCATACAT
Found at i:51376 original size:50 final size:51
Alignment explanation
Indices: 51295--51417 Score: 207
Period size: 50 Copynumber: 2.5 Consensus size: 51
51285 TACATTATGG
*
51295 GTTTTGACCCAAATGTATCG--ATATTATTCATCATATCAATATATTCTTA
1 GTTTTGACCCAAATATATCGATATATTATTCATCATATCAATATATTCTTA
51344 GTTTTGACCC-AATATATCGATATATTATTCATCATATCAATATATTCTTA
1 GTTTTGACCCAAATATATCGATATATTATTCATCATATCAATATATTCTTA
51394 GTTTTTGACCCAAATATATCGATA
1 G-TTTTGACCCAAATATATCGATA
51418 CATGCAGGCA
Statistics
Matches: 69, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
48 8 0.12
49 10 0.14
50 30 0.43
51 9 0.13
52 12 0.17
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.42
Consensus pattern (51 bp):
GTTTTGACCCAAATATATCGATATATTATTCATCATATCAATATATTCTTA
Done.