genome.fa.s1424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1424
Parameters: 2 7 7 80 10 50 1000
Length:  50187

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3930--4107	78	2.3	79	83	5	227	32	15	25	26	1.96
3930--4133	79	2.6	79	74	13	204	34	13	25	26	1.93
4240--4315	28	2.7	28	79	0	80	31	19	27	21	1.97
4405--4501	51	1.9	51	91	0	158	28	13	25	31	1.94
4402--4512	51	2.2	52	81	4	145	33	11	25	29	1.91
6846--7018	20	9.7	19	68	26	94	41	12	15	30	1.84
6885--6981	13	8.4	13	66	25	65	40	12	15	31	1.84
6866--7001	33	4.1	33	93	0	227	40	12	16	30	1.86
7753--7943	42	4.5	42	78	10	199	37	14	26	21	1.91
7919--8183	61	4.4	60	85	6	335	25	20	27	26	1.99
8096--8280	94	2.0	95	90	1	291	27	20	28	24	1.99
8201--8505	55	5.4	56	86	4	418	24	21	25	27	2.00
8201--8505	112	2.7	112	91	1	495	24	21	25	27	2.00
7980--8576	319	1.8	323	87	6	893	25	20	27	25	1.99
16796--17192	52	7.6	50	72	12	239	31	11	26	30	1.91
16796--17017	51	4.3	50	81	6	221	32	11	25	30	1.91
19543--19568	13	2.0	13	100	0	52	38	15	15	30	1.88
19555--19596	21	2.0	21	95	0	75	28	21	9	40	1.84
20530--21341	171	4.7	171	81	8	874	25	21	27	25	1.99
20530--21344	226	3.6	224	85	5	1016	25	21	27	25	1.99
20530--21348	55	14.3	56	82	7	868	25	21	27	25	1.99
21264--21459	100	2.0	93	83	8	241	28	18	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28157--28329	79	2.2	79	85	2	231	32	16	24	26	1.96
28148--28376	79	2.9	78	77	8	230	32	16	25	25	1.96
28310--28479	51	3.3	50	79	8	164	32	12	24	30	1.93
28608--28772	51	3.2	51	78	5	172	30	13	26	29	1.94
28204--28770	291	2.0	289	80	6	646	32	13	24	28	1.94
31028--31102	20	3.8	20	76	13	82	42	12	14	30	1.82
31117--31171	20	2.8	20	94	0	101	45	12	14	27	1.81
38513--38680	20	7.8	20	71	18	106	41	12	17	29	1.86
38465--38747	91	3.1	91	91	2	435	42	13	16	27	1.85
39037--39108	20	3.6	20	76	0	81	34	11	13	40	1.81
39037--39115	40	2.0	39	90	2	122	34	11	13	40	1.81

Tables:   1

The End!