genome.fa.s1427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1427
Parameters: 2 7 7 80 10 50 1000
Length:  86863

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8038--8592	55	10.0	54	82	9	559	27	28	20	23	1.99
8045--8592	157	3.3	159	81	9	548	27	28	20	23	1.99
8045--8568	212	2.4	214	82	9	590	27	28	20	23	1.99
9278--9335	21	2.8	21	100	0	116	31	10	20	37	1.86
9276--9354	21	3.8	21	88	3	97	34	13	17	34	1.90
9389--9457	19	4.0	18	75	22	76	37	11	14	36	1.83
9392--9454	32	2.0	32	93	0	108	36	12	15	34	1.86
9411--9435	13	1.9	13	100	0	50	36	16	16	32	1.90
11888--12280	52	7.5	53	70	15	203	30	26	11	32	1.91
12005--12075	27	2.6	27	86	2	88	25	35	18	21	1.95
25066--25180	8	13.9	8	76	13	90	79	18	0	1	0.88
25066--25180	17	6.9	17	75	10	94	79	18	0	1	0.88
25075--25180	12	8.3	12	77	15	88	79	17	0	1	0.88
25081--25177	4	23.8	4	74	10	72	78	19	1	1	0.87
25066--25164	22	4.5	23	75	14	77	79	17	1	2	0.88
30027--30593	49	12.5	49	71	16	332	28	17	26	26	1.98
30061--30593	39	11.9	48	72	16	419	28	18	26	27	1.98
30060--30590	88	6.0	88	87	2	760	28	18	25	27	1.98
30060--30591	175	3.0	176	91	1	823	28	18	25	27	1.98
30054--30599	180	3.1	179	90	2	857	28	18	26	26	1.98
30590--31094	34	15.7	32	77	10	322	34	14	31	19	1.91
30590--31003	34	12.8	33	78	10	358	35	13	31	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30756--30935	27	6.0	27	75	17	110	33	13	32	21	1.92
30592--30969	61	5.9	62	81	6	338	34	13	32	19	1.91
30881--31296	30	13.5	30	78	10	292	34	14	29	21	1.93
30941--31296	93	3.9	92	80	8	400	34	15	28	21	1.93
31076--31132	28	2.0	28	82	0	69	29	15	29	24	1.96
32185--32223	21	2.0	21	85	10	55	23	20	10	46	1.81
36346--36390	21	2.1	21	83	4	54	35	2	26	35	1.69
37901--37931	16	1.9	16	93	0	53	35	9	0	54	1.33
42610--42662	20	2.7	20	91	5	81	32	16	13	37	1.88
42691--42765	19	3.9	19	89	1	114	40	14	16	29	1.88
42750--42776	13	2.1	13	100	0	54	40	14	14	29	1.86
49545--49665	52	2.3	52	94	0	215	28	17	18	35	1.93
49545--49685	52	2.7	51	87	4	203	30	17	18	34	1.94
49674--49698	13	1.9	13	100	0	50	36	16	16	32	1.90
49763--49787	13	1.9	13	100	0	50	32	16	16	36	1.90
49741--49807	33	2.0	33	88	0	98	40	13	11	34	1.81
50620--50778	49	3.1	49	75	6	147	36	15	23	24	1.94
50399--50943	171	3.2	171	87	3	724	37	14	24	23	1.92
50857--52051	49	24.7	49	83	5	1437	30	17	25	25	1.97
50857--52051	196	6.2	196	92	3	1808	30	17	25	25	1.97
52099--53190	34	32.6	34	80	12	1156	31	13	33	21	1.92
52136--53193	266	4.0	266	97	0	1972	31	13	33	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53172--53341	31	5.7	27	79	10	106	24	18	31	24	1.98
53197--53341	31	4.7	31	84	10	181	24	19	31	24	1.98
53341--53370	15	2.0	15	93	0	51	10	0	0	90	0.47
55022--55081	21	2.9	22	80	7	72	33	16	8	41	1.78
55751--55788	10	3.8	10	83	10	51	81	2	13	2	0.90
55752--55802	19	2.5	20	84	15	61	74	1	19	3	1.07
56662--56859	58	3.4	55	79	6	180	25	13	16	44	1.84
56646--56888	116	2.1	116	81	3	283	26	13	15	44	1.83
59916--59948	2	16.5	2	100	0	66	0	48	0	51	1.00
61096--61129	18	2.0	16	88	11	50	44	2	5	47	1.42
62130--62180	21	2.2	24	83	10	63	37	1	1	58	1.20
62759--62795	7	5.3	7	100	0	74	40	0	0	59	0.97
62810--62843	17	2.1	17	88	5	52	44	8	0	47	1.34
63571--63629	28	2.1	28	84	6	75	57	6	6	28	1.50
71255--71294	18	2.2	18	90	0	62	30	0	0	70	0.88
71264--71435	16	10.8	16	64	23	51	37	0	2	60	1.10
71255--71304	25	2.0	24	84	3	64	36	0	0	64	0.94
71375--71436	24	2.6	24	82	10	74	33	0	0	66	0.92
71373--71450	40	1.9	41	84	2	104	37	0	1	61	1.04
71376--71436	11	5.2	11	73	13	50	32	0	0	67	0.91
75807--75927	52	2.3	52	97	0	224	28	18	18	34	1.94
75807--75947	52	2.7	51	90	4	212	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75936--75960	13	1.9	13	100	0	50	36	16	16	32	1.90
76026--76050	13	1.9	13	100	0	50	32	16	16	36	1.90
76004--76070	33	2.0	33	88	0	98	40	13	11	34	1.81
76108--76149	21	2.0	21	90	0	66	35	14	14	35	1.86
77057--77125	22	3.2	22	63	19	54	30	17	26	26	1.97
76995--77997	49	20.7	49	83	2	1267	30	17	26	25	1.97
76996--78002	98	10.4	98	94	2	1669	30	17	26	25	1.97
77997--78066	33	2.1	35	94	5	126	20	17	37	25	1.94
78051--78529	33	14.4	33	85	6	519	32	12	34	21	1.90
78051--78532	133	3.6	133	83	8	581	32	12	34	21	1.90
78443--78526	31	2.7	32	86	1	107	26	16	30	26	1.97
79477--79513	1	37.0	1	88	0	56	0	2	2	94	0.36
79471--79513	14	3.1	14	87	9	61	0	6	2	90	0.52
79468--79514	15	3.2	15	87	6	69	0	6	6	87	0.68
79751--79823	10	6.7	11	75	12	71	0	1	13	84	0.68
79751--79821	14	5.7	13	78	18	55	0	1	14	84	0.69
79751--79807	12	4.9	12	81	12	66	0	1	14	84	0.71
79751--79824	33	2.3	33	92	2	123	0	1	13	85	0.67
79763--79824	18	3.4	18	86	2	88	0	0	12	87	0.55
79765--79836	33	2.2	33	84	0	90	2	4	11	81	0.92
79763--79824	1	62.0	1	73	0	52	0	0	12	87	0.55
86712--86832	52	2.3	52	97	0	224	28	18	18	34	1.94

Tables:   1

The End!