genome.fa.s1428.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1428
Parameters: 2 7 7 80 10 50 1000
Length:  125228

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602--955	177	2.0	177	97	2	667	34	14	26	24	1.94
5147--5213	31	2.2	30	84	7	82	37	0	1	61	1.05
6390--6435	24	2.0	23	82	4	56	60	2	4	32	1.28
6570--6626	22	2.6	21	80	20	64	61	0	0	38	0.96
6559--6637	20	4.2	20	67	20	53	63	1	0	35	1.03
6886--6913	2	14.0	2	100	0	56	50	0	0	50	1.00
7158--7206	20	2.3	22	86	10	66	38	4	0	57	1.18
7169--7215	20	2.3	20	85	0	67	42	2	0	55	1.12
7167--7229	33	1.9	33	83	6	83	46	1	0	52	1.10
7215--7256	18	2.4	18	84	4	50	64	0	4	30	1.14
15220--15485	128	2.1	129	86	0	363	35	11	12	40	1.78
16574--16639	32	2.1	32	97	0	123	19	21	31	27	1.97
25052--25145	46	2.0	46	93	0	161	35	12	12	39	1.82
25999--26272	136	2.0	136	94	0	485	48	14	12	24	1.78
28243--28280	20	1.9	20	94	0	67	39	13	18	28	1.88
28265--28335	36	2.0	36	100	0	142	25	21	14	39	1.90
28865--29263	29	13.8	29	83	7	483	25	17	29	28	1.97
28865--30046	57	20.5	57	83	8	1357	23	17	29	28	1.97
29263--30046	29	26.9	29	87	4	969	22	17	30	29	1.97
29279--30046	86	8.8	86	84	5	938	22	17	30	29	1.97
30147--30177	15	2.1	15	93	0	53	22	12	38	25	1.90
31295--31343	19	2.5	20	83	6	57	4	2	6	87	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31302--31342	15	2.8	14	89	10	64	2	0	7	90	0.54
45147--45218	20	3.6	20	81	7	92	40	13	13	31	1.85
45588--45865	153	1.8	151	80	9	332	25	16	17	39	1.90
47659--47702	23	1.9	23	90	0	70	22	20	20	36	1.95
47682--47925	58	4.2	58	73	9	178	30	10	14	44	1.78
49951--50001	22	2.5	21	81	12	61	43	0	1	54	1.11
50765--50823	24	2.5	23	76	13	57	37	3	0	59	1.14
51181--51245	15	4.1	15	72	16	51	38	0	1	60	1.07
51725--51775	16	3.2	16	77	5	50	60	0	0	39	0.97
52199--52270	20	3.4	20	72	18	65	52	1	1	44	1.18
53206--53244	2	20.0	2	89	5	62	53	0	0	46	1.00
53689--53728	21	1.9	21	84	0	53	62	0	0	37	0.95
54069--54109	21	2.0	21	95	0	73	46	0	2	51	1.14
54067--54114	21	2.5	19	81	15	62	45	0	2	52	1.12
54090--54257	54	3.1	52	79	12	180	44	1	2	51	1.25
54090--54242	53	2.8	54	79	12	154	44	1	1	51	1.23
55683--55725	18	2.4	18	88	0	68	74	0	0	25	0.82
61987--62027	3	13.7	3	100	0	82	31	0	0	68	0.90
63439--63479	15	2.7	15	80	0	55	14	7	51	26	1.69
65135--65165	13	2.4	13	100	0	62	38	12	16	32	1.86
65250--65276	13	2.1	13	100	0	54	40	14	14	29	1.86
71724--71766	21	2.0	21	82	8	52	30	16	4	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73987--74017	13	2.4	13	94	0	53	41	12	12	32	1.81
74063--74117	19	2.8	19	88	2	74	36	14	16	32	1.89
78414--78503	28	3.1	27	73	16	90	53	21	0	25	1.46
79393--79473	33	2.5	33	91	0	126	29	14	12	43	1.82
79415--79473	13	5.0	13	73	23	67	30	15	13	40	1.86
79424--79462	20	2.0	20	94	0	69	28	15	12	43	1.83
81923--81996	28	2.6	28	82	4	96	21	28	21	28	1.99
81872--82151	108	2.6	107	82	2	364	26	24	15	33	1.95
82036--82109	28	2.6	27	79	8	76	24	29	13	32	1.93
82088--82202	51	2.3	51	87	0	167	30	26	12	31	1.92
82138--82515	79	4.8	79	80	6	363	28	24	14	33	1.94
82419--82470	28	1.9	28	84	7	72	30	26	13	28	1.94
83628--83715	35	2.6	34	79	15	101	38	0	1	60	1.04
84328--84357	14	2.1	14	93	0	51	0	20	0	80	0.72
85675--85714	21	2.0	20	90	5	62	55	2	0	42	1.13
86143--86183	2	20.5	2	89	0	64	0	43	0	56	0.99
87533--87618	38	2.3	38	93	0	145	12	22	13	51	1.75
90879--90917	15	2.7	14	84	7	51	61	0	2	35	1.10
91696--91760	30	2.2	30	91	0	103	30	9	6	53	1.57
94995--95038	19	2.3	19	76	0	52	31	2	20	45	1.64
95520--95666	75	2.0	75	85	5	199	31	28	12	27	1.93
96264--96305	20	2.2	18	84	16	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96675--96722	20	2.5	19	81	18	64	37	0	0	62	0.95
97259--97314	29	1.9	29	85	0	76	55	1	21	21	1.53
97421--97526	52	2.0	55	85	7	146	43	13	3	39	1.62
98450--98488	20	1.9	21	89	5	62	56	0	0	43	0.99
98450--98483	10	3.3	10	87	4	50	55	0	0	44	0.99
99115--99189	22	3.4	21	78	14	64	41	6	1	50	1.37
99126--99182	22	2.7	21	89	8	80	45	8	0	45	1.34
99649--99681	13	2.5	13	95	0	57	27	0	0	72	0.85
99642--99698	21	2.7	22	78	10	75	35	0	0	64	0.93
99671--99719	15	3.4	15	73	18	50	44	0	0	55	0.99
104155--104216	31	2.0	31	83	0	79	35	16	20	27	1.94
108862--108905	22	2.0	22	90	0	70	40	20	6	31	1.79
112252--112277	13	2.0	13	100	0	52	38	15	15	30	1.88
112231--112297	33	2.0	33	88	0	98	43	16	14	25	1.86
112317--112384	19	3.9	18	76	23	83	38	14	11	35	1.83
112339--112363	13	1.9	13	100	0	50	32	16	16	36	1.90
112320--112382	32	2.0	32	96	0	117	36	15	12	34	1.86
113011--113288	153	1.8	151	80	7	330	26	16	17	39	1.90
115079--115122	23	1.9	23	90	0	70	22	20	20	36	1.95
115102--115346	58	4.2	57	74	8	201	31	10	14	44	1.78
118196--118252	24	2.3	24	79	8	62	35	1	0	63	1.05
118185--118233	8	6.1	8	83	9	55	30	2	0	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118168--118249	16	5.3	16	71	15	57	32	1	0	65	1.00
118609--118673	15	4.1	15	72	16	51	38	0	1	60	1.07
119152--119202	16	3.2	16	77	5	50	60	1	0	37	1.08
120645--120683	2	20.0	2	89	5	62	53	0	0	46	1.00
121128--121167	21	1.9	21	84	0	53	62	0	0	37	0.95
121508--121548	21	2.0	21	95	0	73	46	0	2	51	1.14
121506--121553	21	2.5	19	81	15	62	45	0	2	52	1.12
121557--121695	53	2.6	51	78	14	131	45	2	2	49	1.29
123121--123163	18	2.4	18	88	0	68	74	0	0	25	0.82

Tables:   1

The End!