genome.fa.s1432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1432
Parameters: 2 7 7 80 10 50 1000
Length:  57264

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866--1950	26	3.3	25	64	14	64	27	32	18	21	1.97
1820--3094	55	23.3	55	90	6	1929	28	30	20	20	1.98
3625--3686	1	62.0	1	88	0	79	91	3	1	3	0.53
3625--3688	23	3.0	22	86	6	87	89	3	1	6	0.65
3625--3686	28	2.2	30	88	8	94	91	3	1	3	0.53
3782--3849	19	3.9	19	78	21	85	35	11	14	38	1.83
3803--3827	13	1.9	13	100	0	50	36	16	16	32	1.90
3784--3846	32	2.0	32	96	0	117	34	12	15	36	1.86
3889--3914	13	2.0	13	100	0	52	30	15	15	38	1.88
3869--3935	33	2.0	33	88	0	98	25	14	16	43	1.86
6413--6583	51	3.3	50	77	7	180	29	25	11	33	1.91
6566--6647	28	2.9	28	82	7	96	24	30	17	28	1.97
13260--13310	21	2.4	22	93	6	95	35	11	25	27	1.91
13298--13328	10	3.1	10	90	0	53	41	6	29	22	1.78
13352--13488	53	2.6	53	90	1	220	29	17	15	37	1.91
13476--13529	20	2.7	20	80	8	65	29	14	16	38	1.89
13568--13608	21	2.0	21	85	9	57	39	9	12	39	1.76
24778--24808	13	2.4	13	100	0	62	38	12	16	32	1.86
24854--24927	20	4.0	20	75	24	81	35	17	12	35	1.87
24875--24934	13	5.1	13	77	22	78	38	15	13	33	1.86
24855--24934	33	2.4	33	97	0	151	37	16	12	33	1.86
24855--24953	33	3.0	32	91	5	128	38	16	13	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30349--30388	21	2.0	21	90	5	64	47	0	20	32	1.50
32899--32972	1	74.0	1	78	0	58	86	10	2	0	0.67
32899--32971	11	6.7	11	78	10	71	86	10	2	0	0.68
32898--32972	32	2.4	31	81	14	91	85	12	2	0	0.70
32901--32969	10	6.9	10	86	6	79	85	11	2	0	0.70
32899--32978	24	3.5	24	76	10	71	85	10	5	0	0.75
33577--34028	55	8.2	55	89	6	659	28	30	20	20	1.98
33728--33872	26	5.3	26	62	19	73	28	32	19	20	1.96
33577--34028	110	4.1	110	93	2	741	28	30	20	20	1.98
34781--34857	21	3.7	21	89	3	111	35	12	16	35	1.88
34893--34962	19	4.1	18	72	22	69	37	11	11	40	1.77
34895--34957	32	2.0	32	90	0	99	38	12	12	36	1.82
35000--35025	13	2.0	13	100	0	52	30	15	15	38	1.88
34980--35046	33	2.0	33	88	0	98	25	14	16	43	1.86
37383--37720	52	6.4	50	70	18	150	30	25	11	31	1.92
37492--37567	27	2.8	28	90	6	111	23	32	21	22	1.98
37550--37724	52	3.3	52	83	3	226	29	26	11	32	1.91
37378--37830	212	2.1	211	87	2	640	29	26	12	31	1.93
37733--37933	78	2.6	78	79	2	215	25	28	15	30	1.96
37484--37833	106	3.3	105	74	10	352	28	27	13	31	1.94
50295--50351	6	9.2	6	81	11	62	84	12	3	0	0.75
50295--50357	11	5.2	11	80	17	63	84	11	4	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50295--50357	12	5.0	12	83	13	74	84	11	4	0	0.77
50295--50347	19	2.8	19	83	11	65	84	11	3	0	0.73
50295--50357	24	2.5	24	87	10	83	84	11	4	0	0.77
51368--52036	55	12.0	55	87	6	786	26	28	21	23	1.99
52785--52861	21	3.7	21	87	3	102	36	12	15	35	1.86
52897--52964	19	3.9	19	78	21	85	35	11	14	38	1.83
52918--52942	13	1.9	13	100	0	50	36	16	16	32	1.90
52899--52961	32	2.0	32	96	0	117	34	12	15	36	1.86
53004--53029	13	2.0	13	100	0	52	30	15	15	38	1.88
52984--53050	33	2.0	33	88	0	98	25	14	16	43	1.86
53067--53121	20	2.8	20	100	0	110	34	14	10	40	1.81
55521--55593	27	2.7	27	89	6	103	23	32	21	21	1.98
55576--55750	52	3.3	52	80	3	217	29	27	12	30	1.92
55404--55856	212	2.1	211	88	2	658	28	27	13	30	1.94
55510--55859	106	3.3	106	73	6	366	27	28	14	30	1.95
55759--55961	77	2.6	79	80	3	232	24	29	17	29	1.97

Tables:   1

The End!