Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1433

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7924
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31


Found at i:6686 original size:2 final size:2

Alignment explanation


    Indices: 6679--6713  Score: 52
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       6669 CAATTAAACA

                           *        *                           
       6679 AG AG AG AG AG GG AG AG GG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       6714 CCAAAATATA


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00


Consensus pattern (2 bp):   
AG

Done.