genome.fa.s1434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1434
Parameters: 2 7 7 80 10 50 1000
Length:  91339

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1175--1248	20	3.6	20	76	7	76	36	14	10	37	1.82
2140--2179	20	2.0	21	85	5	55	20	20	12	47	1.81
9871--10150	151	1.8	152	83	4	366	38	13	15	32	1.86
9868--10365	154	3.2	151	78	8	409	40	15	15	28	1.88
11857--11920	17	3.4	17	69	22	56	53	23	0	23	1.47
11841--11932	40	2.3	40	96	0	166	55	18	1	25	1.49
12407--12506	27	3.7	27	90	0	137	46	22	8	24	1.78
12391--12507	54	2.2	53	80	5	130	46	21	8	23	1.79
16989--17062	27	2.7	27	79	8	96	47	16	6	29	1.72
17693--17808	20	6.3	18	69	20	71	61	1	0	37	1.07
17704--17777	14	5.0	15	79	17	75	63	0	0	36	0.95
17693--17815	14	9.3	14	70	22	70	60	1	0	38	1.07
18236--18275	16	2.6	16	92	4	64	35	15	22	27	1.94
20927--20963	17	2.2	17	95	0	65	29	21	21	27	1.99
21894--21924	13	2.4	13	94	0	53	48	6	38	6	1.55
22037--22110	27	2.8	28	83	8	100	44	18	12	24	1.84
24942--25323	204	1.9	204	96	1	712	26	22	18	32	1.97
26691--26720	13	2.3	13	94	0	51	50	6	36	6	1.55
26717--26764	13	3.7	13	80	8	62	35	6	37	20	1.78
26842--26898	27	2.1	27	87	6	80	45	17	8	28	1.78
26851--26920	27	2.6	27	79	4	70	45	17	12	24	1.83
36574--36617	21	2.2	20	83	4	52	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36568--36646	29	2.7	29	73	11	81	41	1	0	56	1.07
36653--36700	24	2.0	25	83	4	62	50	0	0	50	1.00
37877--37910	18	1.9	17	88	5	50	41	0	0	58	0.98
37930--37989	13	4.4	14	72	8	52	46	0	1	51	1.10
44014--44077	32	2.0	33	87	3	94	28	12	15	43	1.83
46127--46173	23	2.0	24	84	12	62	61	19	4	14	1.49
47053--47217	84	2.0	84	82	7	201	24	19	3	52	1.62
49258--49283	13	2.0	13	100	0	52	30	15	15	38	1.88
49238--49301	32	2.0	33	90	3	103	28	14	15	42	1.86
55289--56200	32	29.9	32	83	6	815	30	29	18	21	1.97
55289--56210	218	4.3	220	84	5	958	30	29	18	21	1.97
56319--56523	95	2.1	96	92	0	349	20	27	17	34	1.95
56285--56523	48	5.1	48	87	3	326	21	27	17	34	1.95
56904--56947	20	2.3	19	80	7	52	72	2	11	13	1.21
58003--58033	2	15.5	2	100	0	62	48	0	0	51	1.00
62439--62515	22	3.4	21	71	16	57	63	10	3	22	1.42
62520--62564	16	2.6	17	83	16	58	60	0	0	40	0.97
62858--62975	53	2.2	53	76	19	122	47	5	5	41	1.50
64163--64278	20	5.6	19	73	18	90	58	1	0	38	1.14
64147--64293	19	7.2	20	72	16	99	59	1	0	38	1.11
64142--64307	40	4.2	37	74	18	124	57	1	0	40	1.11
78667--78715	27	1.9	25	88	12	73	46	24	4	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80132--80193	16	3.9	16	78	16	65	40	0	4	54	1.22
80100--80207	48	2.2	48	80	6	112	37	0	8	54	1.31
80101--80193	32	2.9	32	77	6	98	38	0	8	52	1.32
82813--82885	2	36.5	2	100	0	146	49	0	0	50	1.00
84367--84409	22	2.0	22	85	0	59	46	0	0	53	1.00
86309--86348	21	1.9	21	100	0	80	42	25	10	22	1.84
87215--87246	2	16.0	2	100	0	64	50	0	0	50	1.00
88986--89059	20	3.6	20	76	7	76	36	14	10	37	1.82
89949--89988	20	2.0	21	85	5	55	20	20	12	47	1.81

Tables:   1

The End!