genome.fa.s1439.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1439
Parameters: 2 7 7 80 10 50 1000
Length:  97703

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1283--1426	67	2.1	68	80	12	156	51	4	5	38	1.47
4798--4829	2	16.0	2	93	0	55	53	0	0	46	1.00
5671--5703	16	2.1	16	94	0	57	51	15	6	27	1.66
7403--7441	19	2.2	17	86	9	51	33	0	2	64	1.08
9029--9134	16	6.9	15	72	17	76	37	0	0	61	1.03
9029--9134	29	3.5	30	73	17	101	37	0	0	61	1.03
9028--9146	63	1.9	61	81	6	141	39	0	0	58	1.10
13131--13188	30	2.0	30	83	10	75	37	5	17	39	1.72
17447--17509	21	3.1	20	77	8	65	38	7	6	47	1.58
17632--17674	18	2.3	19	88	8	61	48	0	2	48	1.14
18799--18841	4	10.8	4	94	0	50	51	9	0	39	1.34
18799--18841	12	3.6	12	87	0	59	51	9	0	39	1.34
19725--19757	16	2.1	16	88	11	50	30	0	0	69	0.88
23840--23975	61	2.2	61	86	2	193	36	15	27	20	1.93
23929--24126	52	3.8	52	83	0	225	36	17	21	23	1.94
24119--24200	43	1.9	43	87	0	119	30	20	23	25	1.99
24316--24425	33	3.4	33	88	1	159	21	17	31	29	1.96
24420--24473	27	2.0	27	85	0	72	31	11	31	25	1.91
24449--25157	32	21.6	32	76	8	507	38	9	28	22	1.86
24455--25134	132	5.2	132	81	3	753	39	9	28	22	1.85
24440--25127	98	7.0	97	76	8	622	39	9	28	22	1.85
29805--29930	51	2.5	51	90	2	193	29	19	7	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792--30839	21	2.4	22	80	16	59	22	22	10	43	1.84
36351--36391	21	2.0	20	86	13	57	48	17	12	21	1.79
37877--38023	43	3.3	43	71	19	147	38	8	8	44	1.65
37865--38046	91	2.0	91	100	0	364	39	7	8	43	1.64
41377--41445	31	2.3	29	82	12	77	46	14	23	15	1.83
44322--44529	104	2.0	103	94	0	362	51	9	10	28	1.66
45091--45137	16	2.9	16	75	9	51	53	0	6	40	1.27
45223--45285	16	3.9	16	77	8	65	57	9	1	31	1.40
46367--46415	17	2.7	19	85	14	68	46	6	2	44	1.39
46483--46524	18	2.3	18	84	11	59	42	2	0	54	1.13
47082--47123	19	2.3	19	91	4	68	28	0	2	69	1.01
47145--47199	18	3.0	18	87	12	69	50	0	0	49	1.00
47419--47467	3	16.7	3	95	4	91	30	0	0	69	0.89
47628--47673	11	4.5	11	78	15	53	32	0	2	65	1.05
47634--47673	19	2.1	20	90	9	66	32	0	0	67	0.91
48277--48332	21	2.6	21	83	8	60	32	12	1	53	1.49
48623--48707	4	21.2	4	87	0	98	48	7	0	44	1.30
48627--48707	30	2.7	30	98	0	153	48	7	0	44	1.31
52855--52909	20	2.8	20	94	0	92	40	14	16	29	1.88
53641--53686	18	2.5	19	85	3	67	39	17	0	43	1.49
62176--62206	2	15.5	2	100	0	62	48	0	0	51	1.00
62640--62666	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62687--62733	22	2.1	22	84	0	58	42	4	2	51	1.33
62954--63001	20	2.4	20	86	6	62	47	0	0	52	1.00
63012--63067	6	9.7	6	74	14	55	33	0	0	66	0.92
63016--63066	11	4.9	11	76	13	54	35	0	0	64	0.94
63027--63068	19	2.3	19	91	4	68	30	0	0	69	0.89
64710--64747	5	7.8	5	88	11	53	57	0	42	0	0.98
65686--65723	20	1.9	19	89	5	58	55	7	2	34	1.43
77444--77468	13	1.9	13	100	0	50	36	16	16	32	1.90
77532--77556	13	1.9	13	100	0	50	32	16	16	36	1.90
77545--77681	52	2.6	53	84	6	165	33	16	16	32	1.92
84616--84649	12	2.9	11	91	8	50	85	14	0	0	0.60
85845--86020	31	5.7	31	86	7	198	25	29	17	27	1.97
85845--86020	62	2.8	62	85	6	232	25	29	17	27	1.97
85842--86020	93	1.9	94	85	5	247	24	29	17	29	1.97
86044--86542	34	15.0	33	81	11	524	20	33	12	34	1.89
86000--86332	34	10.8	28	74	18	149	21	34	14	29	1.92
86044--86542	101	5.0	102	84	10	563	20	33	12	34	1.89
86244--86595	101	3.4	102	82	8	263	22	32	11	32	1.90
86553--86616	33	1.9	34	96	3	121	29	34	18	17	1.94
86616--87002	49	8.0	49	80	11	395	25	24	16	33	1.96
86711--86892	43	4.1	43	82	10	240	24	24	19	31	1.98
86662--86945	92	3.0	92	91	4	453	25	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86846--86983	52	2.6	52	84	3	177	26	24	14	34	1.94
87868--87892	13	1.9	13	100	0	50	36	16	16	32	1.90
87956--87980	13	1.9	13	100	0	50	32	16	16	36	1.90
87969--88105	52	2.6	53	88	4	199	32	18	17	31	1.94
95985--96039	20	2.8	20	77	0	65	41	14	10	32	1.81
97136--97365	30	7.7	30	69	16	106	29	31	16	22	1.96

Tables:   1

The End!