Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold144
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3311329
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
File 15 of 21
Found at i:2169186 original size:55 final size:55
Alignment explanation
Indices: 2169030--2169974 Score: 1262
Period size: 55 Copynumber: 16.9 Consensus size: 55
2169020 ATAAAGTGTA
* * ** * ** * *
2169030 TCCTGCTCATTGAGGAGTAAAAAATGCCACAAACACGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
*
2169085 TCCTGCTCTTTGGGGAC---AAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAGAGGTG
* * *
2169139 TCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
** *
2169194 TCCTGCTCTTTGAGGACTGGAGGATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----GAG-AGG-TG
* * *
2169256 -CCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-----GAG-AGGTG
* *
2169316 TCCTGCTCTTTGGGGAC--GAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
* *
2169370 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
*
2169425 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
* *
2169480 TCCTGCTCTTTGGGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAGAGGTG
*
2169535 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
*
2169590 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
* *
2169645 TCCTGCTCTTTGGGGACT--AAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAA--TGCCACCAACTTGTGTGGGCTTTGAGAGGTG
*
2169700 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
2169755 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
2169810 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
* **
2169865 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG---AG---AGGTG
* *
2169926 TCCTGCTCTTTGAAGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGA
2169975 AAGAAAAAGG
Statistics
Matches: 812, Mismatches: 48, Indels: 57
0.89 0.05 0.06
Matches are distributed among these distances:
52 4 0.00
53 8 0.01
54 60 0.07
55 570 0.70
56 4 0.00
57 12 0.01
58 3 0.00
59 3 0.00
60 27 0.03
61 120 0.15
62 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTG
Found at i:2169612 original size:27 final size:27
Alignment explanation
Indices: 2169530--2169612 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
2169520 GGGCTTTAAG
2169530 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
2169557 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
2169585 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
2169612 A
1 A
2169613 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:2169777 original size:27 final size:27
Alignment explanation
Indices: 2169695--2169777 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
2169685 GGGCTTTAAG
2169695 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
2169722 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
2169750 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
2169777 A
1 A
2169778 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:2176282 original size:79 final size:79
Alignment explanation
Indices: 2176115--2176321 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 79
2176105 GAGATAATAA
* * * * ** * * *
2176115 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTAGAGTATCCCCGGTTGTGAGAAATCGATGC
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAC
*
2176180 TTAGAAAAAAAAAT
66 TTAGAAAAAAAAAC
* * *
2176194 CGGGATTGGAGTATCCCCTTGAAAATAACGGGGTTGGGGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAC
* ** * *
2176259 TTTGGGAATAAAGC
66 TTAGAAAAAAAAAC
* * *
2176273 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCAAT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCAAT
2176322 GAAATAACGA
Statistics
Matches: 105, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
79 105 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAC
TTAGAAAAAAAAAC
Found at i:2176313 original size:28 final size:28
Alignment explanation
Indices: 2176273--2176344 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2176263 GGAATAAAGC
** *
2176273 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
*
2176301 CGGGGTTGGAGTATCCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
*
2176329 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2176345 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAAGGAAATAA
Found at i:2176327 original size:107 final size:108
Alignment explanation
Indices: 2176194--2176426 Score: 283
Period size: 108 Copynumber: 2.2 Consensus size: 108
2176184 AAAAAAAAAT
* * * * *
2176194 CGGGATTGGAGTATCCCCTTGAAAATAACGGGGTTGGGGTATCCCCAATTATGAGAAA-TCAATA
1 CGGGGTTGGAGTATCCCCATGAAAATAACGAGGTTGGAGTATCCCCAACTATGA-AAAGTCAATA
* * * *
2176258 -TTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAA
65 TTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
* * * ***
2176301 CGGGGTTGGAGTATCCCCAATG-AAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAGTTGGTA
1 CGGGGTTGGAGTATCCCC-ATGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAGTCAATA
*
2176365 TTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
65 TTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
2176409 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
2176427 GATTGTGAAG
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
106 3 0.03
107 46 0.43
108 58 0.54
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (108 bp):
CGGGGTTGGAGTATCCCCATGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAGTCAATAT
TTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
Found at i:2176395 original size:80 final size:82
Alignment explanation
Indices: 2176305--2176480 Score: 266
Period size: 80 Copynumber: 2.2 Consensus size: 82
2176295 AAGTAACGGG
* * *
2176305 GTTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCTCGACTGTGAA-AAGTTGGT-ATTT
1 GTTGGAGTATCCCCAAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAGAAATTGGTGATTT
2176368 TTGGAAATAAAATCGGA
66 TTGGAAATAAAATCGGA
** * * *
2176385 GTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTT
1 GTTGGAGTATCCCCAAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAGAAATTGGTGATTT
2176450 TTGGAAATAAAATCGGA
66 TTGGAAATAAAATCGGA
2176467 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2176481 GATTATAGAA
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 45 0.52
81 7 0.08
82 34 0.40
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (82 bp):
GTTGGAGTATCCCCAAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAGAAATTGGTGATTT
TTGGAAATAAAATCGGA
Found at i:2176528 original size:51 final size:50
Alignment explanation
Indices: 2176413--2176583 Score: 184
Period size: 51 Copynumber: 3.3 Consensus size: 50
2176403 AAATAACGGG
* * *
2176413 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTAGTG---TTTGAAAATAAAACCGGA
*
2176467 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTAGTGT-TTGAAAATAAAACC-GGA
* **
2176519 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTGA-AAATAAAACCGGA
2176570 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2176584 TCGGAAATAA
Statistics
Matches: 102, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
50 1 0.01
51 36 0.35
52 35 0.34
53 10 0.10
54 20 0.20
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTGAAAATAAAACCGGA
Found at i:2176575 original size:52 final size:49
Alignment explanation
Indices: 2176413--2176583 Score: 175
Period size: 52 Copynumber: 3.3 Consensus size: 49
2176403 AAATAACGGG
* *
2176413 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTAGTG--TTTTGG--ATAAAACCGGA
* * *
2176467 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTAGTGTTTTG--GATAAAACC-GGA
2176519 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTT-G-GATAAAACCGGA
2176570 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2176584 TCGGAAATAA
Statistics
Matches: 100, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
51 32 0.32
52 37 0.37
53 11 0.11
54 20 0.20
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (49 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGATAAAACCGGA
Found at i:2176610 original size:28 final size:27
Alignment explanation
Indices: 2176570--2176638 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
2176560 TAAAACCGGA
**
2176570 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
2176598 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
2176625 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2176639 AATTGTGAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.25
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:2179118 original size:13 final size:13
Alignment explanation
Indices: 2179100--2179125 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2179090 ACAAAGATCC
2179100 ATGTATCGATACA
1 ATGTATCGATACA
2179113 ATGTATCGATACA
1 ATGTATCGATACA
2179126 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2179121 original size:33 final size:33
Alignment explanation
Indices: 2179079--2179145 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2179069 AAAATTTCCA
***
2179079 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2179112 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2179145 A
1 A
2179146 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2179189 original size:19 final size:18
Alignment explanation
Indices: 2179165--2179232 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
2179155 CAGTAGCTAA
2179165 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2179184 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2179199 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2179216 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2179233 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2179205 original size:13 final size:13
Alignment explanation
Indices: 2179187--2179211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2179177 ACAATACTTA
2179187 TGTATCGATACAT
1 TGTATCGATACAT
2179200 TGTATCGATACA
1 TGTATCGATACA
2179212 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2179209 original size:32 final size:32
Alignment explanation
Indices: 2179168--2179230 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2179158 TAGCTAATTA
*
2179168 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
2179200 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2179231 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2181149 original size:7 final size:7
Alignment explanation
Indices: 2181092--2181146 Score: 101
Period size: 7 Copynumber: 7.9 Consensus size: 7
2181082 TTATATTATA
2181092 TGGCACT
1 TGGCACT
2181099 TGGCACT
1 TGGCACT
2181106 TGGCACT
1 TGGCACT
2181113 TGGCACT
1 TGGCACT
2181120 TGGCACT
1 TGGCACT
2181127 TGGCACT
1 TGGCACT
*
2181134 TGGCACG
1 TGGCACT
2181141 TGGCAC
1 TGGCAC
2181147 GTGCAGGTGC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.15, C:0.29, G:0.31, T:0.25
Consensus pattern (7 bp):
TGGCACT
Found at i:2182834 original size:13 final size:13
Alignment explanation
Indices: 2182816--2182879 Score: 64
Period size: 13 Copynumber: 5.1 Consensus size: 13
2182806 AATTTAAGGT
2182816 TTATATATTTATA
1 TTATATATTTATA
2182829 TTATAT-TTGTATA
1 TTATATATT-TATA
2182842 -TATTATATTTATA
1 TTA-TATATTTATA
*
2182855 TT-TA-ATATATA
1 TTATATATTTATA
*
2182866 ATATATATTTATA
1 TTATATATTTATA
2182879 T
1 T
2182880 AAATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
11 7 0.17
12 8 0.20
13 23 0.56
14 3 0.07
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TTATATATTTATA
Found at i:2182835 original size:11 final size:11
Alignment explanation
Indices: 2182819--2182974 Score: 63
Period size: 11 Copynumber: 15.1 Consensus size: 11
2182809 TTAAGGTTTA
2182819 TATATTTATAT
1 TATATTTATAT
*
2182830 TATATTTGTA-
1 TATATTTATAT
2182840 TATA-TTATATT
1 TATATTTATA-T
2182851 TATATTTA-A-
1 TATATTTATAT
*
2182860 TATA-TAATA-
1 TATATTTATAT
2182869 TATATTTATA-
1 TATATTTATAT
*
2182879 TAAATTT-TA-
1 TATATTTATAT
*
2182888 AAGTA-TTA-AT
1 TA-TATTTATAT
*
2182898 AATA-TTATA-
1 TATATTTATAT
* *
2182907 TAAATTT-TAA
1 TATATTTATAT
*
2182917 TAAATTTTATAT
1 TATA-TTTATAT
*
2182929 TATATTAATAT
1 TATATTTATAT
2182940 TACT-TTTATAT
1 TA-TATTTATAT
*
2182951 TATATTTAAAT
1 TATATTTATAT
*
2182962 TATTTTTTATAT
1 TA-TATTTATAT
2182974 T
1 T
2182975 TAATTATTAT
Statistics
Matches: 113, Mismatches: 16, Indels: 31
0.71 0.10 0.19
Matches are distributed among these distances:
8 2 0.02
9 28 0.25
10 25 0.22
11 41 0.36
12 17 0.15
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (11 bp):
TATATTTATAT
Found at i:2182843 original size:21 final size:21
Alignment explanation
Indices: 2182817--2182879 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 21
2182807 ATTTAAGGTT
2182817 TATATATT-TATATTATATTTG
1 TATATATTATAT-TTATATTTG
*
2182838 TATATATTATATTTATATTTAA
1 TATATATTATATTTATATTT-G
2182860 TATATAATATATATTTATAT
1 TATAT-AT-TATATTTATAT
2182880 AAATTTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 16 0.43
22 8 0.22
23 2 0.05
24 11 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TATATATTATATTTATATTTG
Found at i:2182887 original size:29 final size:30
Alignment explanation
Indices: 2182838--2182918 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 30
2182828 ATTATATTTG
**
2182838 TATATATTATATTTATATTTAATA-TA-TAA
1 TATATATTATATAAAT-TTTAATAGTATTAA
2182867 TATATATTTATATAAATTTTAA-AGTATTAA
1 TATATA-TTATATAAATTTTAATAGTATTAA
2182897 TA-ATATTATATAAATTTTAATA
1 TATATATTATATAAATTTTAATA
2182919 AATTTTATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
28 16 0.35
29 17 0.37
30 13 0.28
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (30 bp):
TATATATTATATAAATTTTAATAGTATTAA
Found at i:2182910 original size:21 final size:21
Alignment explanation
Indices: 2182886--2182938 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
2182876 ATATAAATTT
2182886 TAAAGTATTAAT-AATATTATA
1 TAAA-TATTAATAAATATTATA
* *
2182907 TAAATTTTAATAAATTTTATA
1 TAAATATTAATAAATATTATA
*
2182928 T-TATATTAATA
1 TAAATATTAATA
2182939 TTACTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TAAATATTAATAAATATTATA
Found at i:2182935 original size:40 final size:40
Alignment explanation
Indices: 2182844--2182938 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 40
2182834 TTTGTATATA
*
2182844 TTATATTTATATTTAAT-ATATAATATATATTTATATAAATT
1 TTATA-TTATA-TTAATAATATAATATAAATTTATATAAATT
*
2182885 TTA-A--AGTATTAATAATATTATATAAATTT-TAATAAATT
1 TTATATTA-TATTAATAATATAATATAAATTTAT-ATAAATT
2182923 TTATATTATATTAATA
1 TTATATTATATTAATA
2182939 TTACTTTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
37 7 0.15
38 25 0.54
39 1 0.02
40 9 0.20
41 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (40 bp):
TTATATTATATTAATAATATAATATAAATTTATATAAATT
Found at i:2182948 original size:22 final size:23
Alignment explanation
Indices: 2182921--2182974 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
2182911 TTTTAATAAA
2182921 TTTTATATTATA-TTAATATTA-C
1 TTTTATATTATATTTAA-ATTATC
*
2182943 TTTTATATTATATTTAAATTATT
1 TTTTATATTATATTTAAATTATC
2182966 TTTTATATT
1 TTTTATATT
2182975 TAATTATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTATATTATATTTAAATTATC
Found at i:2184519 original size:14 final size:14
Alignment explanation
Indices: 2184487--2184569 Score: 87
Period size: 14 Copynumber: 5.8 Consensus size: 14
2184477 TCATATTAGT
*
2184487 TTTTTATATAAATA
1 TTTTTATATAGATA
2184501 TTTTTTATATAGATA
1 -TTTTTATATAGATA
*
2184516 TTTTAATATAGATA
1 TTTTTATATAGATA
* *
2184530 ATTTGATATAG-TA
1 TTTTTATATAGATA
*
2184543 TTTTTGATATAAATA
1 TTTTT-ATATAGATA
2184558 TTTTTAATATAG
1 TTTTT-ATATAG
2184570 TTACTTTTGA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
13 5 0.09
14 27 0.47
15 25 0.44
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (14 bp):
TTTTTATATAGATA
Found at i:2184577 original size:15 final size:14
Alignment explanation
Indices: 2184487--2184602 Score: 72
Period size: 14 Copynumber: 8.1 Consensus size: 14
2184477 TCATATTAGT
* *
2184487 TTTTTATATAAATA
1 TTTTAATATAGATA
*
2184501 TTTTTTATATAGATA
1 -TTTTAATATAGATA
2184516 TTTTAATATAGATA
1 TTTTAATATAGATA
* *
2184530 ATTTGATATAG-TA
1 TTTTAATATAGATA
* *
2184543 TTTTTGATATAAATA
1 -TTTTAATATAGATA
*
2184558 TTTTTAATATAGTTA
1 -TTTTAATATAGATA
* * *
2184573 CTTTTGACATAAATA
1 -TTTTAATATAGATA
* *
2184588 TCTTAATATATATA
1 TTTTAATATAGATA
2184602 T
1 T
2184603 ATTGATGTAT
Statistics
Matches: 81, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
13 2 0.02
14 42 0.52
15 37 0.46
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (14 bp):
TTTTAATATAGATA
Found at i:2184635 original size:15 final size:15
Alignment explanation
Indices: 2184531--2184649 Score: 68
Period size: 15 Copynumber: 8.1 Consensus size: 15
2184521 ATATAGATAA
2184531 TTTGATAT-AGTATT
1 TTTGATATAAGTATT
*
2184545 TTTGATATAAATATT
1 TTTGATATAAGTATT
* *
2184560 TTTAATAT-AGTTACT
1 TTTGATATAAG-TATT
* *
2184575 TTTGACATAAATA-T
1 TTTGATATAAGTATT
* *
2184589 CTTAATAT-A-TATAT
1 TTTGATATAAGTAT-T
* * * *
2184603 ATTGATGTATGTACT
1 TTTGATATAAGTATT
2184618 TTTGATATAAGTATT
1 TTTGATATAAGTATT
* *
2184633 TTTGACATAAATATT
1 TTTGATATAAGTATT
2184648 TT
1 TT
2184650 GTCACAAATA
Statistics
Matches: 77, Mismatches: 21, Indels: 13
0.69 0.19 0.12
Matches are distributed among these distances:
12 2 0.03
13 1 0.01
14 21 0.27
15 50 0.65
16 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.51
Consensus pattern (15 bp):
TTTGATATAAGTATT
Found at i:2184649 original size:14 final size:15
Alignment explanation
Indices: 2184617--2184668 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
2184607 ATGTATGTAC
* *
2184617 TTTTGATATAAGTAT
1 TTTTGACATAAATAT
2184632 TTTTGACATAAATA-
1 TTTTGACATAAATAT
* *
2184646 TTTTGTCACAAATAT
1 TTTTGACATAAATAT
2184661 TTTTGACA
1 TTTTGACA
2184669 CTAGTACTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.48
Consensus pattern (15 bp):
TTTTGACATAAATAT
Found at i:2184649 original size:29 final size:29
Alignment explanation
Indices: 2184531--2184668 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 29
2184521 ATATAGATAA
*
2184531 TTTGATAT-AGTATTTTTGATATAAATAT
1 TTTGATATAAGTATTTTTGACATAAATAT
* *
2184559 TTTTA-ATATAGTTACTTTTGACATAAATAT
1 TTTGATATA-AG-TATTTTTGACATAAATAT
* * * ** **
2184589 CTTAATAT-A-TATATATTGATGTATGTACT
1 TTTGATATAAGTAT-TTTTGACATAAATA-T
2184618 TTTGATATAAGTATTTTTGACATAAATAT
1 TTTGATATAAGTATTTTTGACATAAATAT
* *
2184647 TTTG-TCACAAATATTTTTGACA
1 TTTGAT-ATAAGTATTTTTGACA
2184669 CTAGTACTTC
Statistics
Matches: 81, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
27 4 0.05
28 14 0.17
29 29 0.36
30 29 0.36
31 5 0.06
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (29 bp):
TTTGATATAAGTATTTTTGACATAAATAT
Found at i:2184664 original size:15 final size:15
Alignment explanation
Indices: 2184629--2184669 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
2184619 TTGATATAAG
*
2184629 TATTTTTGACATAAA
1 TATTTTTGACACAAA
*
2184644 TA-TTTTGTCACAAA
1 TATTTTTGACACAAA
2184658 TATTTTTGACAC
1 TATTTTTGACAC
2184670 TAGTACTTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (15 bp):
TATTTTTGACACAAA
Found at i:2185474 original size:56 final size:57
Alignment explanation
Indices: 2185412--2185519 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 57
2185402 AAAATAAATA
*
2185412 TTAAATTTATATGTTAATTGGGAAAGCAACTTTTGAAA-ATTTTATAATTAACATTG
1 TTAAATTTATATGTTAATTGGGAAAGCAAATTTTGAAATATTTTATAATTAACATTG
* * * *
2185468 TTAAATTTTTATGTTAATTGGGCAAGCAAATTTTGAAATTTTTTTTAATTAA
1 TTAAATTTATATGTTAATTGGGAAAGCAAATTTTGAAATATTTTATAATTAA
2185520 TTAATATGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
56 35 0.76
57 11 0.24
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (57 bp):
TTAAATTTATATGTTAATTGGGAAAGCAAATTTTGAAATATTTTATAATTAACATTG
Found at i:2186630 original size:37 final size:36
Alignment explanation
Indices: 2186573--2186651 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 36
2186563 GATTTAATTC
2186573 ATTTTAAAATTATATTTTAATTCAAGTAAATATTATA
1 ATTTTAAAATTATATTTTAATTCAAGTAAATATTA-A
** * *
2186610 TATTTTAATTTTAT-TTTTAATTCAATTATATATTAA
1 -ATTTTAAAATTATATTTTAATTCAAGTAAATATTAA
2186646 ATTTTA
1 ATTTTA
2186652 GATGAATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 6 0.16
36 1 0.03
37 19 0.51
38 11 0.30
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.56
Consensus pattern (36 bp):
ATTTTAAAATTATATTTTAATTCAAGTAAATATTAA
Found at i:2187475 original size:11 final size:10
Alignment explanation
Indices: 2187444--2187486 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
2187434 AAATATAATT
2187444 TAATTTAATAA
1 TAATTTAA-AA
*
2187455 TAATTAAAAA
1 TAATTTAAAA
2187465 TAATTTTAAAA
1 TAA-TTTAAAA
*
2187476 TAAATTAAAA
1 TAATTTAAAA
2187486 T
1 T
2187487 TTCATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 12 0.43
11 16 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TAATTTAAAA
Found at i:2187535 original size:6 final size:7
Alignment explanation
Indices: 2187515--2187541 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
2187505 AAAAGTCTTG
2187515 AATAAAA
1 AATAAAA
2187522 AATAAAA
1 AATAAAA
2187529 AATAAAA
1 AATAAAA
2187536 AATAAA
1 AATAAA
2187542 TAGAAGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:2187719 original size:3 final size:3
Alignment explanation
Indices: 2187713--2187740 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2187703 TAATAATAAT
2187713 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
2187741 TAGGCAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:2188232 original size:14 final size:15
Alignment explanation
Indices: 2188213--2188245 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
2188203 GTTGAAATAC
*
2188213 AATTTTAATAA-AAA
1 AATTTTAAAAATAAA
2188227 AATTTTAAAAATAAA
1 AATTTTAAAAATAAA
2188242 AATT
1 AATT
2188246 ATTTGATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATTTTAAAAATAAA
Found at i:2189189 original size:14 final size:13
Alignment explanation
Indices: 2189138--2189194 Score: 60
Period size: 13 Copynumber: 4.3 Consensus size: 13
2189128 AATTTAATTT
* *
2189138 AATTAATTTATAT
1 AATTAATTTTTAA
*
2189151 AATTAATTTTAAA
1 AATTAATTTTTAA
**
2189164 AATTAAAATTTAA
1 AATTAATTTTTAA
2189177 AACTTAATTTTTAA
1 AA-TTAATTTTTAA
2189191 AATT
1 AATT
2189195 TTTATCTTCA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
13 24 0.69
14 11 0.31
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTAATTTTTAA
Found at i:2189313 original size:2 final size:2
Alignment explanation
Indices: 2189306--2189330 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2189296 AAAACTTAAC
2189306 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2189331 AAAATTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2189340 original size:16 final size:16
Alignment explanation
Indices: 2189306--2189397 Score: 53
Period size: 16 Copynumber: 5.6 Consensus size: 16
2189296 AAAACTTAAC
* * *
2189306 ATATATATATATATAT
1 ATATATATAAAAATTT
2189322 ATATATATAAAAATTT
1 ATATATATAAAAATTT
* *
2189338 ATATGT-TATAAATTT
1 ATATATATAAAAATTT
* * *
2189353 TTAATTTATTAAAATTT
1 AT-ATATATAAAAATTT
2189370 ATATAAATATAAAAAATTT
1 ATAT--ATAT-AAAAATTT
*
2189389 -TAAATATAA
1 ATATATATAA
2189398 TATAAATAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
15 11 0.19
16 27 0.47
17 8 0.14
18 5 0.09
19 7 0.12
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (16 bp):
ATATATATAAAAATTT
Found at i:2189349 original size:17 final size:16
Alignment explanation
Indices: 2189321--2189373 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
2189311 TATATATATA
*
2189321 TATATATATAAAAATT
1 TATATTTATAAAAATT
**
2189337 TATATGTTATAAATTTT
1 TATAT-TTATAAAAATT
*
2189354 TA-ATTTATTAAAATT
1 TATATTTATAAAAATT
2189369 TATAT
1 TATAT
2189374 AAATATAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 10 0.34
16 9 0.31
17 10 0.34
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TATATTTATAAAAATT
Found at i:2189421 original size:23 final size:21
Alignment explanation
Indices: 2189370--2189415 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
2189360 ATTAAAATTT
*
2189370 ATATAAATATAAAAAATTTTAA
1 ATAT-AATATAAAAAATATTAA
2189392 ATATAATATAAATAAATGATTAA
1 ATATAATATAAA-AAAT-ATTAA
2189415 A
1 A
2189416 ACTAATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 8 0.38
23 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
ATATAATATAAAAAATATTAA
Found at i:2191684 original size:27 final size:26
Alignment explanation
Indices: 2191621--2191687 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
2191611 ATATATTATT
* *
2191621 TTTTAAAAAAATATTAATTTTATTTAA
1 TTTTAAATAAAT-TTGATTTTATTTAA
*
2191648 TTTTTAATAAATTTGATTTT-TTTAA
1 TTTTAAATAAATTTGATTTTATTTAA
2191673 GTTTTAATATAAATT
1 -TTTTAA-ATAAATT
2191688 ATATTATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 5 0.15
26 12 0.35
27 17 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (26 bp):
TTTTAAATAAATTTGATTTTATTTAA
Found at i:2192865 original size:13 final size:13
Alignment explanation
Indices: 2192849--2192879 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2192839 TTAAAATGAA
*
2192849 CATTTAATTAATT
1 CATTTAATTAACT
2192862 CATTTAATTAACT
1 CATTTAATTAACT
2192875 CATTT
1 CATTT
2192880 GCAACTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (13 bp):
CATTTAATTAACT
Found at i:2199607 original size:83 final size:82
Alignment explanation
Indices: 2199450--2199608 Score: 275
Period size: 82 Copynumber: 1.9 Consensus size: 82
2199440 GGCATATTTA
*
2199450 TGTTCATGAGCGAACTCGATAACCTATTTATGAAAAGGCTTGATAAAACCTTGTTTTGTGTTTCC
1 TGTTCATGAGCGAACTCAATAACCTATTTATGAAAAGGCTTGATAAAACCTTGTTTTGTGTTTCC
2199515 TAATTACTCTACTTTTT
66 TAATTACTCTACTTTTT
*
2199532 TGTTCATGAGC-ACACTCAATCACCTATTTATGAAAAGGCTTGAATAAAACCTTGTTTTGTGTTT
1 TGTTCATGAGCGA-ACTCAATAACCTATTTATGAAAAGGCTTG-ATAAAACCTTGTTTTGTGTTT
2199596 CCTAATTACTCTA
64 CCTAATTACTCTA
2199609 ATTTCAGATG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
81 1 0.01
82 38 0.52
83 34 0.47
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (82 bp):
TGTTCATGAGCGAACTCAATAACCTATTTATGAAAAGGCTTGATAAAACCTTGTTTTGTGTTTCC
TAATTACTCTACTTTTT
Found at i:2202447 original size:23 final size:21
Alignment explanation
Indices: 2202405--2202449 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
2202395 TATTAAAACA
2202405 ATTATATTTTTTTTACTTATT
1 ATTATATTTTTTTTACTTATT
*
2202426 ATTATATTTATCTTTTATTTATT
1 ATTATATTT-T-TTTTACTTATT
2202449 A
1 A
2202450 AATATTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTATATTTTTTTTACTTATT
Found at i:2206046 original size:15 final size:15
Alignment explanation
Indices: 2206012--2206055 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
2206002 TAGATTGAAT
*
2206012 TTAAATATAAA-TGA
1 TTAAATATAAATTAA
2206026 TATAAATATAAATTAA
1 T-TAAATATAAATTAA
*
2206042 TTAAATTTAAATTA
1 TTAAATATAAATTA
2206056 TTATTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 1 0.04
15 22 0.85
16 3 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
TTAAATATAAATTAA
Found at i:2206103 original size:19 final size:18
Alignment explanation
Indices: 2206067--2206117 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
2206057 TATTTATTAA
* *
2206067 TAAAAAAATTTATTTATT
1 TAAAATAATTTATATATT
2206085 TAAAATAATATTATATATT
1 TAAAATAAT-TTATATATT
2206104 TATAAATTAATTTA
1 TA-AAA-TAATTTA
2206118 AATTTAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.29
19 10 0.36
20 6 0.21
21 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATAATTTATATATT
Found at i:2206596 original size:2 final size:2
Alignment explanation
Indices: 2206589--2206621 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2206579 ATTTTGGAAT
2206589 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2206622 TAGCAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2207174 original size:26 final size:28
Alignment explanation
Indices: 2207127--2207179 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
2207117 TTATTATATC
2207127 TATCATATATTAATATAATTAATTTAAA
1 TATCATATATTAATATAATTAATTTAAA
**
2207155 TATCATAT-TTAA-ATTTTTAATTTAA
1 TATCATATATTAATATAATTAATTTAA
2207180 TTTTCTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 4 0.17
28 8 0.35
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (28 bp):
TATCATATATTAATATAATTAATTTAAA
Found at i:2207511 original size:2 final size:2
Alignment explanation
Indices: 2207490--2207535 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
2207480 CCAAAGGGTG
* * *
2207490 AT AT AC AT AC AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2207532 AT AT
1 AT AT
2207536 GGTTTCAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:2211299 original size:13 final size:13
Alignment explanation
Indices: 2211283--2211307 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2211273 AAATAAATAT
2211283 ATTAAATTTAAAA
1 ATTAAATTTAAAA
2211296 ATTAAATTTAAA
1 ATTAAATTTAAA
2211308 TAAAAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTAAATTTAAAA
Found at i:2211445 original size:18 final size:18
Alignment explanation
Indices: 2211422--2211473 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
2211412 AAATTTATAC
*
2211422 TTTTATATATTAAATAAT
1 TTTTATATATTAAAAAAT
2211440 TTTTAT-TATATAAAAAAT
1 TTTTATATAT-TAAAAAAT
* *
2211458 ATATATAATATTAAAA
1 TTTTAT-ATATTAAAA
2211474 TATAAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 3 0.11
18 17 0.61
19 5 0.18
20 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTTATATATTAAAAAAT
Found at i:2211489 original size:34 final size:34
Alignment explanation
Indices: 2211450--2211563 Score: 96
Period size: 35 Copynumber: 3.4 Consensus size: 34
2211440 TTTTATTATA
2211450 TAAAAAATATATATAA-TATTAAAATATAAATAT
1 TAAAAAATATATATAATTATTAAAATATAAATAT
* * *
2211483 TAAAAAATATGT-TAAATTATTTAAATTTTAAA-ATT
1 TAAAAAATATATAT-AATTA-TTAAAATATAAATA-T
*
2211518 TAATAAAA-ATAT-TAAATTATTAAAA-ATTAAATTT
1 TAA-AAAATATATAT-AATTATTAAAATA-TAAATAT
2211552 TAAAAAATATAT
1 TAAAAAATATAT
2211564 TAAAAATAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
32 1 0.02
33 17 0.26
34 20 0.30
35 24 0.36
36 4 0.06
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (34 bp):
TAAAAAATATATATAATTATTAAAATATAAATAT
Found at i:2211541 original size:17 final size:17
Alignment explanation
Indices: 2211452--2211557 Score: 66
Period size: 15 Copynumber: 6.3 Consensus size: 17
2211442 TTATTATATA
2211452 AAAAATATATATAA-TATT
1 AAAAATAT-TA-AATTATT
2211470 -AAAATA-TAAA-TATT
1 AAAAATATTAAATTATT
2211484 AAAAAATATGTTAAATTATT
1 -AAAAATA--TTAAATTATT
* * *
2211504 -TAAATTTTAAAATTTAAT
1 AAAAATATT-AAA-TTATT
2211522 AAAAATATTAAATTATT
1 AAAAATATTAAATTATT
2211539 -AAAA-ATTAAATT-TT
1 AAAAATATTAAATTATT
2211553 AAAAA
1 AAAAA
2211558 ATATATTAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 23
0.71 0.06 0.23
Matches are distributed among these distances:
14 8 0.11
15 14 0.19
16 12 0.17
17 13 0.18
18 11 0.15
19 10 0.14
20 4 0.06
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (17 bp):
AAAAATATTAAATTATT
Found at i:2211548 original size:15 final size:14
Alignment explanation
Indices: 2211503--2211557 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 14
2211493 GTTAAATTAT
2211503 TTAAATTTT-AAAA
1 TTAAATTTTAAAAA
* *
2211516 TTTAA--TAAAAATA
1 TTAAATTTTAAAA-A
2211529 TTAAATTATTAAAAA
1 TTAAATT-TTAAAAA
2211544 TTAAATTTTAAAAA
1 TTAAATTTTAAAAA
2211558 ATATATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
11 1 0.03
12 3 0.09
13 9 0.27
14 7 0.21
15 8 0.24
16 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TTAAATTTTAAAAA
Found at i:2211564 original size:34 final size:34
Alignment explanation
Indices: 2211450--2211567 Score: 127
Period size: 34 Copynumber: 3.5 Consensus size: 34
2211440 TTTTATTATA
*
2211450 TAAAAAATATA-TATAA-TATT-AAAATATAAATAT
1 TAAAAAATATATTA-AATTATTAAAAAT-TAAATTT
* ** *
2211483 TAAAAAATATGTTAAATTATTTAAATTTTAAAATT
1 TAAAAAATATATTAAATTA-TTAAAAATTAAATTT
2211518 TAATAAAA-ATATTAAATTATTAAAAATTAAATTT
1 TAA-AAAATATATTAAATTATTAAAAATTAAATTT
2211552 TAAAAAATATATTAAA
1 TAAAAAATATATTAAA
2211568 AATAATATTA
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
33 16 0.23
34 27 0.39
35 20 0.29
36 7 0.10
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (34 bp):
TAAAAAATATATTAAATTATTAAAAATTAAATTT
Found at i:2213578 original size:25 final size:26
Alignment explanation
Indices: 2213520--2213584 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 26
2213510 TTATCTAAAT
*
2213520 TCTCAGATAAAGTTGAATTTTATCAA
1 TCTCAAATAAAGTTGAATTTTATCAA
*
2213546 TC-CTAAATGAAGTTGAA-TTTATCAA
1 TCTC-AAATAAAGTTGAATTTTATCAA
2213571 TCTCAAATAAAGTT
1 TCTCAAATAAAGTT
2213585 AAACTCTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 20 0.59
26 14 0.41
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.37
Consensus pattern (26 bp):
TCTCAAATAAAGTTGAATTTTATCAA
Found at i:2218975 original size:14 final size:14
Alignment explanation
Indices: 2218958--2219005 Score: 78
Period size: 14 Copynumber: 3.4 Consensus size: 14
2218948 TTAAAAGAAG
2218958 TATTTTAATTTTTA
1 TATTTTAATTTTTA
*
2218972 TATTATTAATTTTAA
1 TATT-TTAATTTTTA
2218987 TATTTTAATTTTTA
1 TATTTTAATTTTTA
2219001 TATTT
1 TATTT
2219006 AAAAAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTTTAATTTTTA
Found at i:2222734 original size:2 final size:2
Alignment explanation
Indices: 2222727--2222751 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2222717 GTTAAAAGGT
2222727 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2222752 TTGGAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2222808 original size:21 final size:21
Alignment explanation
Indices: 2222784--2222832 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
2222774 TTAGGGAGTA
2222784 CATAAGAGGATGTAACATATG
1 CATAAGAGGATGTAACATATG
2222805 CATAAGAGGATGTAACATATG
1 CATAAGAGGATGTAACATATG
*
2222826 CAAAAGA
1 CATAAGA
2222833 TTTAAATACG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.47, C:0.10, G:0.22, T:0.20
Consensus pattern (21 bp):
CATAAGAGGATGTAACATATG
Found at i:2227173 original size:19 final size:20
Alignment explanation
Indices: 2227149--2227194 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
2227139 ACATTATATA
*
2227149 GATACATAATG-ATTGTATC
1 GATACATAATGAAATGTATC
**
2227168 GATACATGGTGAAATGTATC
1 GATACATAATGAAATGTATC
2227188 GATACAT
1 GATACAT
2227195 TGAGCCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
GATACATAATGAAATGTATC
Found at i:2227624 original size:23 final size:23
Alignment explanation
Indices: 2227589--2227632 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
2227579 GTATTCAACA
*
2227589 TTGGGTTACAATTTCTT-AAGAAT
1 TTGGGGTACAA-TTCTTGAAGAAT
*
2227612 TTGGGGTATAATTCTTGAAGA
1 TTGGGGTACAATTCTTGAAGA
2227633 GATTGATAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (23 bp):
TTGGGGTACAATTCTTGAAGAAT
Found at i:2229210 original size:101 final size:101
Alignment explanation
Indices: 2229035--2229234 Score: 346
Period size: 101 Copynumber: 2.0 Consensus size: 101
2229025 GAGTGATAGT
* * *
2229035 GACTCATTCGATGACGATGAAAAAGTCGTAAATCTATGTCTTATGGCTCATGAAGAGCCGAAGGT
1 GACTCATTCAATGACGATAAAAAAGTCGTAAATCTATGTCATATGGCTCATGAAGAGCCGAAGGT
2229100 AAATTCTTATACCTTTAAAGAATTACAAGATGCTGC
66 AAATTCTTATACCTTTAAAGAATTACAAGATGCTGC
* *
2229136 GACTCATTCAATGACGATAAAAAAGTTGTAAATCTATGTCATATGGCTCATGAAGAGCCGGAGGT
1 GACTCATTCAATGACGATAAAAAAGTCGTAAATCTATGTCATATGGCTCATGAAGAGCCGAAGGT
*
2229201 AAATTCTTATACCTTTAAAGAATTGCAAGATGCT
66 AAATTCTTATACCTTTAAAGAATTACAAGATGCT
2229235 TTTGAAGAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 93 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (101 bp):
GACTCATTCAATGACGATAAAAAAGTCGTAAATCTATGTCATATGGCTCATGAAGAGCCGAAGGT
AAATTCTTATACCTTTAAAGAATTACAAGATGCTGC
Found at i:2237105 original size:60 final size:61
Alignment explanation
Indices: 2236976--2237105 Score: 137
Period size: 60 Copynumber: 2.2 Consensus size: 61
2236966 AAAGCCCTTT
* * * * *
2236976 GATCATGG--AAAATGACTTTAATGACATCAAAATCCATTAAATTTGCATCGAAGTCCCTAA
1 GATCATGGAAAAAATGACCTAAATGACATCAAAATCCATTAAAATTACATCAAAGT-CCTAA
* *
2237036 G-TCAT-GAAAAAATGACCTAAATGACATCAAAATTCA-TAAAATTACTTCAAAGT-CTATA
1 GATCATGGAAAAAATGACCTAAATGACATCAAAATCCATTAAAATTACATCAAAGTCCTA-A
2237094 GATCATGGAAAA
1 GATCATGGAAAA
2237106 TAACATAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
57 3 0.05
58 3 0.05
59 21 0.36
60 31 0.53
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (61 bp):
GATCATGGAAAAAATGACCTAAATGACATCAAAATCCATTAAAATTACATCAAAGTCCTAA
Found at i:2242233 original size:20 final size:20
Alignment explanation
Indices: 2242205--2242246 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
2242195 AGTCTCAAAG
2242205 TGTACAGTGGCCGAAGATCA
1 TGTACAGTGGCCGAAGATCA
* *
2242225 TGTATAGTGGCTGAAGATCA
1 TGTACAGTGGCCGAAGATCA
2242245 TG
1 TG
2242247 GACGATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (20 bp):
TGTACAGTGGCCGAAGATCA
Found at i:2246302 original size:16 final size:16
Alignment explanation
Indices: 2246283--2246397 Score: 90
Period size: 16 Copynumber: 7.2 Consensus size: 16
2246273 GTCTCGGTTA
*
2246283 ATTTTGAGTTTAAATT
1 ATTTTGAATTTAAATT
* *
2246299 ATTTTAAATTTAAATA
1 ATTTTGAATTTAAATT
* *
2246315 ATTTTTAAATTAAATT
1 ATTTTGAATTTAAATT
** *
2246331 ATTTTTTATTTTAATT
1 ATTTTGAATTTAAATT
*
2246347 ATTTTGAATTTAAATA
1 ATTTTGAATTTAAATT
* * *
2246363 ACTTT-AAATAAAATT
1 ATTTTGAATTTAAATT
*
2246378 ATTTTTAAATTT-AATT
1 A-TTTTGAATTTAAATT
2246394 ATTT
1 ATTT
2246398 AAAGTTAGAC
Statistics
Matches: 77, Mismatches: 20, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
15 11 0.14
16 63 0.82
17 3 0.04
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (16 bp):
ATTTTGAATTTAAATT
Found at i:2246318 original size:32 final size:32
Alignment explanation
Indices: 2246281--2246397 Score: 103
Period size: 32 Copynumber: 3.7 Consensus size: 32
2246271 GAGTCTCGGT
*
2246281 TAATTTTGAGTTTAAATTATTTTAAATTTAAA
1 TAATTTTGAATTTAAATTATTTTAAATTTAAA
* * ** *
2246313 TAATTTTTAAATTAAATTATTTTTTATTTTAA
1 TAATTTTGAATTTAAATTATTTTAAATTTAAA
* * * *
2246345 TTATTTTGAATTTAAATAACTTTAAA-TAAAA
1 TAATTTTGAATTTAAATTATTTTAAATTTAAA
* *
2246376 TTATTTTTAAATTT-AATTATTT
1 -TAATTTTGAATTTAAATTATTT
2246398 AAAGTTAGAC
Statistics
Matches: 64, Mismatches: 20, Indels: 3
0.74 0.23 0.03
Matches are distributed among these distances:
31 9 0.14
32 55 0.86
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (32 bp):
TAATTTTGAATTTAAATTATTTTAAATTTAAA
Found at i:2246335 original size:48 final size:46
Alignment explanation
Indices: 2246283--2246382 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 46
2246273 GTCTCGGTTA
* *
2246283 ATTTTGAGTTTAAATTATTTTAAATTTAAATAATTTTTAAATTAAATT
1 ATTTTGA-TTTAAATTATTTTAAATTTAAATAA-CTTTAAATAAAATT
* * *
2246331 ATTTTTTATTTTAATTATTTTGAATTTAAATAACTTTAAATAAAATT
1 A-TTTTGATTTAAATTATTTTAAATTTAAATAACTTTAAATAAAATT
2246378 ATTTT
1 ATTTT
2246383 TAAATTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 4 0.09
47 13 0.28
48 24 0.52
49 5 0.11
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (46 bp):
ATTTTGATTTAAATTATTTTAAATTTAAATAACTTTAAATAAAATT
Found at i:2246391 original size:47 final size:48
Alignment explanation
Indices: 2246295--2246397 Score: 154
Period size: 47 Copynumber: 2.2 Consensus size: 48
2246285 TTTGAGTTTA
* * * *
2246295 AATTATTTTAAATTTAAATAATTTTTAAATTAAATTATTTTTTATTTT
1 AATTATTTTAAATTTAAATAATCTTTAAATAAAATTATTTTTAAATTT
*
2246343 AATTATTTTGAATTTAAATAA-CTTTAAATAAAATTATTTTTAAATTT
1 AATTATTTTAAATTTAAATAATCTTTAAATAAAATTATTTTTAAATTT
2246390 AATTATTT
1 AATTATTT
2246398 AAAGTTAGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 30 0.60
48 20 0.40
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (48 bp):
AATTATTTTAAATTTAAATAATCTTTAAATAAAATTATTTTTAAATTT
Found at i:2246555 original size:33 final size:31
Alignment explanation
Indices: 2246510--2246571 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
2246500 TAATTTTGAA
2246510 ATTAAATAAGATTAAATTTAAATATTTTATTTG
1 ATTAAATAAGATTAAA-TTAAA-ATTTTATTTG
* **
2246543 ATTAAATCAGATTTTATTAAAATTTTATT
1 ATTAAATAAGATTAAATTAAAATTTTATT
2246572 GAAAGATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 8 0.31
32 5 0.19
33 13 0.50
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (31 bp):
ATTAAATAAGATTAAATTAAAATTTTATTTG
Found at i:2246602 original size:21 final size:21
Alignment explanation
Indices: 2246578--2246619 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2246568 TATTGAAAGA
2246578 TAAAGATAAATAA-ATAATATT
1 TAAA-ATAAATAAGATAATATT
*
2246599 TAAAATAAATAAGATATTATT
1 TAAAATAAATAAGATAATATT
2246620 GACTATCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (21 bp):
TAAAATAAATAAGATAATATT
Found at i:2246874 original size:17 final size:17
Alignment explanation
Indices: 2246849--2246881 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2246839 AATAAAATAG
2246849 AAAAATAAATTAATTAT
1 AAAAATAAATTAATTAT
*
2246866 AAAATTAAATTAATTA
1 AAAAATAAATTAATTA
2246882 ATTATGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATAAATTAATTAT
Found at i:2247009 original size:22 final size:23
Alignment explanation
Indices: 2246984--2247030 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
2246974 AAACATATGA
*
2246984 TATT-TGTATAATATAT-CATTTT
1 TATTATGT-TAATATATACATATT
2247006 TATTATGTTAATATATACATATT
1 TATTATGTTAATATATACATATT
2247029 TA
1 TA
2247031 CACATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATGTTAATATATACATATT
Found at i:2248519 original size:13 final size:13
Alignment explanation
Indices: 2248501--2248531 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2248491 ATAATTCATC
*
2248501 ATGTATTGATATA
1 ATGTATCGATATA
2248514 ATGTATCGATATA
1 ATGTATCGATATA
2248527 ATGTA
1 ATGTA
2248532 CCATGTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (13 bp):
ATGTATCGATATA
Found at i:2248537 original size:33 final size:33
Alignment explanation
Indices: 2248480--2248544 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2248470 CGTTAGAAGC
* *
2248480 AATGTATCGATATAATTCATCATGTATTGATAT
1 AATGTATCGATATAATTCACCATGTATAGATAT
2248513 AATGTATCGATATAATGT-ACCATGTATAGATA
1 AATGTATCGATATAAT-TCACCATGTATAGATA
2248545 CAAACACTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (33 bp):
AATGTATCGATATAATTCACCATGTATAGATAT
Found at i:2248620 original size:19 final size:19
Alignment explanation
Indices: 2248576--2248650 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
2248566 CTGCCAGTTT
**
2248576 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
2248596 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
2248615 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
2248634 CATGTATCGATACAATG
1 CATGTATCGATACAATG
2248651 TATCGATACA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
19 38 0.72
20 15 0.28
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2248653 original size:13 final size:13
Alignment explanation
Indices: 2248635--2248661 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2248625 TACAATGAAC
2248635 ATGTATCGATACA
1 ATGTATCGATACA
2248648 ATGTATCGATACA
1 ATGTATCGATACA
2248661 A
1 A
2248662 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2251197 original size:13 final size:13
Alignment explanation
Indices: 2251179--2251229 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
2251169 ATAGTAACCC
*
2251179 ATGTATCGATACA
1 ATGTATAGATACA
2251192 ATGTATAGATACA
1 ATGTATAGATACA
*
2251205 A--T-TCGATACA
1 ATGTATAGATACA
2251215 ATGTATAGATACA
1 ATGTATAGATACA
2251228 AT
1 AT
2251230 TCGATACATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
10 8 0.25
11 1 0.03
12 1 0.03
13 22 0.69
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (13 bp):
ATGTATAGATACA
Found at i:2251214 original size:23 final size:23
Alignment explanation
Indices: 2251184--2251237 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
2251174 AACCCATGTA
2251184 TCGATACAATGTATAGATACAAT
1 TCGATACAATGTATAGATACAAT
2251207 TCGATACAATGTATAGATACAAT
1 TCGATACAATGTATAGATACAAT
2251230 TCGATACA
1 TCGATACA
2251238 TTCTAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.30
Consensus pattern (23 bp):
TCGATACAATGTATAGATACAAT
Found at i:2254144 original size:21 final size:21
Alignment explanation
Indices: 2254118--2254159 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2254108 TTACCCTTAA
2254118 TGCATGCATCACAAACTTTAT
1 TGCATGCATCACAAACTTTAT
2254139 TGCATGCATCACAAACTTTAT
1 TGCATGCATCACAAACTTTAT
2254160 CGCAATCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (21 bp):
TGCATGCATCACAAACTTTAT
Found at i:2256671 original size:13 final size:13
Alignment explanation
Indices: 2256653--2256677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2256643 CATAAAGTAT
2256653 TGTATCGATACAA
1 TGTATCGATACAA
2256666 TGTATCGATACA
1 TGTATCGATACA
2256678 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2256693 original size:32 final size:33
Alignment explanation
Indices: 2256633--2256701 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
2256623 TTCAACGATT
2256633 TGTATCGATACATAAAGTATTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAA
*
2256666 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAA
2256698 TGTA
1 TGTA
2256702 AGCTACTGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 22 0.63
33 13 0.37
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (33 bp):
TGTATCGATACATAAAGTATTGTATCGATACAA
Found at i:2256736 original size:13 final size:13
Alignment explanation
Indices: 2256718--2256742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2256708 TGCCAAAAAA
2256718 TGTATCGATACAT
1 TGTATCGATACAT
2256731 TGTATCGATACA
1 TGTATCGATACA
2256743 CTAATCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2256809 original size:52 final size:52
Alignment explanation
Indices: 2256731--2256876 Score: 206
Period size: 52 Copynumber: 2.8 Consensus size: 52
2256721 ATCGATACAT
** *
2256731 TGTATCGATACACTA-ATCTTTATATCGATACATGCAGGCAAATTTACCCAGA
1 TGTATCGATACACTATA-AATTGTATCGATACATGCAGGCAAATTTACCCAGA
* * *
2256783 TGTATCGATACACTATAAATTGTATCGATACATACAGGTAAATTTGCCCAGA
1 TGTATCGATACACTATAAATTGTATCGATACATGCAGGCAAATTTACCCAGA
2256835 TGTATCGATACACTATGAAA-TGTATCGATACATGCAGGCAAA
1 TGTATCGATACACTAT-AAATTGTATCGATACATGCAGGCAAA
2256877 ATTTCATATT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 80 0.95
53 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCGATACACTATAAATTGTATCGATACATGCAGGCAAATTTACCCAGA
Found at i:2262598 original size:29 final size:29
Alignment explanation
Indices: 2262537--2262598 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
2262527 TCAATATTTT
* ** *
2262537 AATTTTTATTAATAATTTATCAATACAAT
1 AATTTTTATTAATAATATAAAAATACAAA
2262566 AATTTTTATTCAATAATATAAAAATA-AAA
1 AATTTTTATT-AATAATATAAAAATACAAA
2262595 AATT
1 AATT
2262599 CGTTTTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
AATTTTTATTAATAATATAAAAATACAAA
Found at i:2263885 original size:14 final size:14
Alignment explanation
Indices: 2263865--2263900 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2263855 TTTTAATTAT
2263865 AATTAAAAAGATAA
1 AATTAAAAAGATAA
* *
2263879 TATTAAAAATATAA
1 AATTAAAAAGATAA
2263893 AATTAAAA
1 AATTAAAA
2263901 TAGTAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AATTAAAAAGATAA
Found at i:2264301 original size:5 final size:5
Alignment explanation
Indices: 2264285--2264345 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
2264275 AATTTTAAAA
* * *
2264285 TATAT CTATAT TATAT TATAT TATAT TTTAAT TATTT TAT-T TATA- TATAAA
1 TATAT -TATAT TATAT TATAT TATAT TAT-AT TATAT TATAT TATAT TAT-AT
2264336 TATAT TATAT
1 TATAT TATAT
2264346 GAATATAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
4 7 0.15
5 28 0.60
6 12 0.26
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:2264343 original size:19 final size:21
Alignment explanation
Indices: 2264296--2264345 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
2264286 ATATCTATAT
* *
2264296 TATATTATATTATATTTTAAT
1 TATATTATATTATATTATAAA
*
2264317 TATTTTAT-TTATA-TATAAA
1 TATATTATATTATATTATAAA
2264336 TATATTATAT
1 TATATTATAT
2264346 GAATATAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 11 0.46
20 6 0.25
21 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATATTATATTATATTATAAA
Found at i:2267734 original size:11 final size:11
Alignment explanation
Indices: 2267718--2267751 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
2267708 GCACTATGGT
*
2267718 TTTTATATTAA
1 TTTTATTTTAA
*
2267729 TTTTATTTTTA
1 TTTTATTTTAA
2267740 TTTTATTTTAA
1 TTTTATTTTAA
2267751 T
1 T
2267752 AAGCATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTATTTTAA
Found at i:2272548 original size:70 final size:69
Alignment explanation
Indices: 2272351--2272571 Score: 196
Period size: 74 Copynumber: 3.0 Consensus size: 69
2272341 ATATCAATCT
* *
2272351 TAAAAATTTTAAA-TTTTATAATCAAATTAAAAAATAAATCTTAAATTTTTATAAATAAAATTGA
1 TAAAAA-TTTAAACTTTTATAATCAAA-T-AAAAATAAAT-TTAAATTTTTACAAATAAAA-TAA
*
2272415 ATTA-CACC
61 ATTATAACC
* ** * * *
2272423 ATTATAAATTTAAACTCATATCATACTTAATAAAAA-ACATAATTAAATTTTTACAAATCAAAAT
1 --TAAAAATTTAAACTTTTATAAT-C-AAATAAAAATA-A-ATTTAAATTTTTACAAAT-AAAAT
2272487 AAATTATAACC
59 AAATTATAACC
* *
2272498 TAAAAATTTAAACTTTTATAATCAAATAAAAATAAATTTAAATTTCTACAAATAAAAATAAATAA
1 TAAAAATTTAAACTTTTATAATCAAATAAAAATAAATTTAAATTTTTACAAAT-AAAATAAATTA
2272563 TAACTC
65 TAAC-C
2272569 TAA
1 TAA
2272572 TCAAATTAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 21
0.75 0.11 0.13
Matches are distributed among these distances:
70 30 0.25
71 13 0.11
72 2 0.02
73 25 0.21
74 38 0.32
75 10 0.08
76 2 0.02
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (69 bp):
TAAAAATTTAAACTTTTATAATCAAATAAAAATAAATTTAAATTTTTACAAATAAAATAAATTAT
AACC
Found at i:2272951 original size:8 final size:7
Alignment explanation
Indices: 2272923--2272948 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
2272913 ACTTGTGATT
2272923 TTTTTAA
1 TTTTTAA
2272930 TTTTTAA
1 TTTTTAA
2272937 TTTTTAA
1 TTTTTAA
2272944 TTTTT
1 TTTTT
2272949 TAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:2273169 original size:15 final size:15
Alignment explanation
Indices: 2273149--2273178 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2273139 TTGATAAATT
2273149 TTTTTAAATATTAAA
1 TTTTTAAATATTAAA
*
2273164 TTTTTAAATTTTAAA
1 TTTTTAAATATTAAA
2273179 AAACTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTTAAATATTAAA
Found at i:2273484 original size:72 final size:75
Alignment explanation
Indices: 2273347--2273486 Score: 180
Period size: 71 Copynumber: 1.9 Consensus size: 75
2273337 TGTAAAAGAT
* * **
2273347 ATAATAATTAATATTTTAATTTATTAATATAAATTTTTTAAAATTTAATTAAATATTATTTTTAT
1 ATAATAATTAATATTATAATTTATCAATATAAATTTTTTAAAATTTAATTAAATATTAAATTTAT
2273412 TTTATTAAAA
66 TTTATTAAAA
* * *
2273422 ATAATAATTAATA-TATAA-TT-TCAATA-AAATTTTTTTAAATTTAATTAATTTTTCAAATTTA
1 ATAATAATTAATATTATAATTTATCAATATAAATTTTTTAAAATTTAATTAAATATT-AAATTTA
2273483 TTTT
65 TTTT
2273487 TTTATTAATT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
71 24 0.42
72 14 0.25
73 2 0.04
74 4 0.07
75 13 0.23
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (75 bp):
ATAATAATTAATATTATAATTTATCAATATAAATTTTTTAAAATTTAATTAAATATTAAATTTAT
TTTATTAAAA
Found at i:2277515 original size:363 final size:363
Alignment explanation
Indices: 2276850--2277573 Score: 1340
Period size: 363 Copynumber: 2.0 Consensus size: 363
2276840 TTCTGCACAA
* *
2276850 ACACCTGTGATTCCTGATTTCCTTTTATAGCATTAAAATTTTTTTTATTCCACTAGTCAGAAACT
1 ACACCTGTGATTCCTGATTTCCTTTTATAGCATTAAAATATTTTTTATTCCACTAGTAAGAAACT
*
2276915 GCTTGAGAGAAATTGACTGATAATATTCCCTGTTTTCTGCCTTCTTGCGTGCTAAGGCTAGTTCT
66 GCTTGAGAGAAATTGACTGATAATATCCCCTGTTTTCTGCCTTCTTGCGTGCTAAGGCTAGTTCT
*
2276980 GCTGTAAATTTACACTTTCTGTTTTTGTTTGGGGTTTCTGGTTTATTGAAAATTTGCACATTGGG
131 GCTGTAAATTTACACTTTCTGTTTTTGTTTGGGGTTTCTGGTTTATTGAAAATTTGAACATTGGG
* *
2277045 ATTGTTTTTAGATGTTATACATTTTGTAATTCAATTTTGAGACATTCTGGCCCTTGAGATCTACA
196 ATTGTTTTTAGATGTTATACATTTTATAATTCAATTTTGAGACATTCTGGCCATTGAGATCTACA
*
2277110 ATGAATATATTCTCTATGTTAAAAGTTTTGAGTCTTGAAACCTCTCTCTATGTTTCAAGTGTTAC
261 ATGAATATATTCTCTATGTTAAAAGTTTAGAGTCTTGAAACCTCTCTCTATGTTTCAAGTGTTAC
*
2277175 TATAATTTTGCTTTCCTTTTCTCCCATTATGAATACAG
326 TATAATTTTGCTTTCCTTTTCTCACATTATGAATACAG
* * *
2277213 ACACCTGTGATTCCTGATTTCCTTTTGTGGCATTAAAATATTTTTTATTCCACTTGTAAGAAACT
1 ACACCTGTGATTCCTGATTTCCTTTTATAGCATTAAAATATTTTTTATTCCACTAGTAAGAAACT
*
2277278 GCTTGAGAGAAATTGACTGATAATATCCCCTGTTTTTTGCCTTCTTGCGTGCTAAGGCTAGTTCT
66 GCTTGAGAGAAATTGACTGATAATATCCCCTGTTTTCTGCCTTCTTGCGTGCTAAGGCTAGTTCT
2277343 GCTGTAAATTTACACTTTCTGTTTTTGTTTGGGGTTTCTGGTTTATTGAAAATTTGAACATTGGG
131 GCTGTAAATTTACACTTTCTGTTTTTGTTTGGGGTTTCTGGTTTATTGAAAATTTGAACATTGGG
2277408 ATTGTTTTTAGATGTTATACATTTTATAATTCAATTTTGAGACATTCTGGCCATTGAGATCTACA
196 ATTGTTTTTAGATGTTATACATTTTATAATTCAATTTTGAGACATTCTGGCCATTGAGATCTACA
2277473 ATGAATATATTCTCTATGTTAAAAGTTTAGAGTCTTGAAACCTCTCTCTATGTTTCAAGTGTTAC
261 ATGAATATATTCTCTATGTTAAAAGTTTAGAGTCTTGAAACCTCTCTCTATGTTTCAAGTGTTAC
2277538 TATAATTTTGCTTTCCTTTTCTCACATTATGAATAC
326 TATAATTTTGCTTTCCTTTTCTCACATTATGAATAC
2277574 TAGGTCATCA
Statistics
Matches: 349, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
363 349 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (363 bp):
ACACCTGTGATTCCTGATTTCCTTTTATAGCATTAAAATATTTTTTATTCCACTAGTAAGAAACT
GCTTGAGAGAAATTGACTGATAATATCCCCTGTTTTCTGCCTTCTTGCGTGCTAAGGCTAGTTCT
GCTGTAAATTTACACTTTCTGTTTTTGTTTGGGGTTTCTGGTTTATTGAAAATTTGAACATTGGG
ATTGTTTTTAGATGTTATACATTTTATAATTCAATTTTGAGACATTCTGGCCATTGAGATCTACA
ATGAATATATTCTCTATGTTAAAAGTTTAGAGTCTTGAAACCTCTCTCTATGTTTCAAGTGTTAC
TATAATTTTGCTTTCCTTTTCTCACATTATGAATACAG
Found at i:2281567 original size:15 final size:16
Alignment explanation
Indices: 2281519--2281569 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
2281509 ATGAAGAACA
* *
2281519 TATTA-TTTAAATAAA
1 TATTATTTTTAATAAT
*
2281534 TATATATTTTTATTAAT
1 TAT-TATTTTTAATAAT
2281551 TATTATTTTTAAT-AT
1 TATTATTTTTAATAAT
2281566 TATT
1 TATT
2281570 TAATATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 9 0.30
16 11 0.37
17 10 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTTTTAATAAT
Found at i:2282751 original size:2 final size:2
Alignment explanation
Indices: 2282741--2282770 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
2282731 CAAACACACG
*
2282741 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2282771 ATTTTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:2283668 original size:2 final size:2
Alignment explanation
Indices: 2283661--2283705 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
2283651 CCTCCTCATT
2283661 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
2283703 TC T
1 TC T
2283706 TCTGCTATCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:2285683 original size:2 final size:2
Alignment explanation
Indices: 2285676--2285700 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2285666 AGCGAATCAG
2285676 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2285701 GTTTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2285748 original size:19 final size:18
Alignment explanation
Indices: 2285715--2285751 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
2285705 TTTAAAATTT
2285715 TTTATATATTTAAATATA
1 TTTATATATTTAAATATA
*
2285733 TTTATATGTATTAAATATA
1 TTTATATAT-TTAAATATA
2285752 AATATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTATATATTTAAATATA
Found at i:2286483 original size:7 final size:7
Alignment explanation
Indices: 2286463--2286500 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
2286453 TTCATTCTAG
2286463 TTTTAAA
1 TTTTAAA
* *
2286470 ATATAAA
1 TTTTAAA
2286477 TTTTAAA
1 TTTTAAA
2286484 TTTTAAA
1 TTTTAAA
2286491 TTTTAAA
1 TTTTAAA
2286498 TTT
1 TTT
2286501 ATTGAATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TTTTAAA
Found at i:2287831 original size:13 final size:13
Alignment explanation
Indices: 2287815--2287840 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2287805 ATGTAGTTTG
2287815 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
2287828 CTTTTTTTTTTTT
1 CTTTTTTTTTTTT
2287841 TTTGGTTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
CTTTTTTTTTTTT
Found at i:2290485 original size:20 final size:21
Alignment explanation
Indices: 2290449--2290511 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
2290439 TAAAGTTAGC
2290449 TAAATTTTAAATATTTTTATT
1 TAAATTTTAAATATTTTTATT
*
2290470 TAAATTTT-ATTATTTTTATT
1 TAAATTTTAAATATTTTTATT
* *
2290490 T-ATTTTTAAATTAATTTTATT
1 TAAATTTTAAA-TATTTTTATT
2290511 T
1 T
2290512 TTTTATGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.14
20 13 0.36
21 18 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TAAATTTTAAATATTTTTATT
Found at i:2290487 original size:30 final size:29
Alignment explanation
Indices: 2290453--2290516 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
2290443 GTTAGCTAAA
*
2290453 TTTTAAATATTTTT-ATTTAAATTTTATTAT
1 TTTTAAATATTTTTAAATT-AATTTTATT-T
**
2290483 TTTTATTTATTTTTAAATTAATTTTATTT
1 TTTTAAATATTTTTAAATTAATTTTATTT
2290512 TTTTA
1 TTTTA
2290517 TGATTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 6 0.20
30 21 0.70
31 3 0.10
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (29 bp):
TTTTAAATATTTTTAAATTAATTTTATTT
Found at i:2292387 original size:11 final size:13
Alignment explanation
Indices: 2292362--2292393 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
2292352 AAGTAATAAA
2292362 AAAGAAAATTCAT
1 AAAGAAAATTCAT
2292375 AAA-AAAATT-AT
1 AAAGAAAATTCAT
2292386 AAAGAAAA
1 AAAGAAAA
2292394 ATCCTGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 10 0.56
13 3 0.17
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAGAAAATTCAT
Found at i:2292868 original size:2 final size:2
Alignment explanation
Indices: 2292861--2292891 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2292851 ACCCAAGAAT
2292861 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
2292892 GTACGCTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:2294576 original size:162 final size:162
Alignment explanation
Indices: 2294309--2294638 Score: 642
Period size: 162 Copynumber: 2.0 Consensus size: 162
2294299 TCTTGTTGCC
*
2294309 TATAATTTAGTTTGGAATTTGGATTTAAACGAGTAGTTGGATGCTTAGCATCAATATTGTAATAA
1 TATAATTTAGTTTGGAATTCGGATTTAAACGAGTAGTTGGATGCTTAGCATCAATATTGTAATAA
2294374 GATGGCTGTGCTTTTTCTTACTTGTTTTATGCTATATTTGCAATTGCTGCAGACACCAGAAAGAG
66 GATGGCTGTGCTTTTTCTTACTTGTTTTATGCTATATTTGCAATTGCTGCAGACACCAGAAAGAG
2294439 ATTTTACTATTAAAATTTCAGGATTAGAAATT
131 ATTTTACTATTAAAATTTCAGGATTAGAAATT
2294471 TATAATTTAGTTTGGAATTCGGATTTAAACGAGTAGTTGGATGCTTAGCATCAATATTGTAATAA
1 TATAATTTAGTTTGGAATTCGGATTTAAACGAGTAGTTGGATGCTTAGCATCAATATTGTAATAA
*
2294536 GATGGCTGTGCTTTTTCTTACTTGTTTTATGCTATATTTGCAATTGCTGCAGACACCAGAGAGAG
66 GATGGCTGTGCTTTTTCTTACTTGTTTTATGCTATATTTGCAATTGCTGCAGACACCAGAAAGAG
2294601 ATTTTACTATTAAAATTTCAGGATTAGAAATT
131 ATTTTACTATTAAAATTTCAGGATTAGAAATT
2294633 TATAAT
1 TATAAT
2294639 GAGAATGTTA
Statistics
Matches: 166, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
162 166 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (162 bp):
TATAATTTAGTTTGGAATTCGGATTTAAACGAGTAGTTGGATGCTTAGCATCAATATTGTAATAA
GATGGCTGTGCTTTTTCTTACTTGTTTTATGCTATATTTGCAATTGCTGCAGACACCAGAAAGAG
ATTTTACTATTAAAATTTCAGGATTAGAAATT
Found at i:2300239 original size:16 final size:17
Alignment explanation
Indices: 2300213--2300244 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2300203 TGAGAATTCA
2300213 ATTTAATTTAATTTTAG
1 ATTTAATTTAATTTTAG
2300230 ATTT-ATTTAATTTTA
1 ATTTAATTTAATTTTA
2300245 TGCTGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTAATTTAATTTTAG
Found at i:2300987 original size:11 final size:11
Alignment explanation
Indices: 2300971--2300996 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
2300961 ATATGTAATA
2300971 ATTTTAAAAAT
1 ATTTTAAAAAT
2300982 ATTTTAAAAAT
1 ATTTTAAAAAT
2300993 ATTT
1 ATTT
2300997 GATAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:2301500 original size:18 final size:18
Alignment explanation
Indices: 2301478--2301515 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
2301468 TACATTATAT
2301478 TAAAAAATAATTT-AATA
1 TAAAAAATAATTTAAATA
*
2301495 TAAAAAATATTTTAAATA
1 TAAAAAATAATTTAAATA
2301513 TAA
1 TAA
2301516 TATAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAAAATAATTTAAATA
Found at i:2301530 original size:26 final size:25
Alignment explanation
Indices: 2301489--2301560 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
2301479 AAAAAATAAT
*
2301489 TTAATATAAA-A-AATAT-TTTAAA
1 TTAATATAAATATAATATATTAAAA
2301511 TATAATATAAATATATATATATTAAAA
1 T-TAATATAAATATA-ATATATTAAAA
*
2301538 TTTATATAAATATAA-ATTATTAA
1 TTAATATAAATATAATA-TATTAA
2301561 TATATTAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
22 1 0.02
23 9 0.21
24 2 0.05
25 8 0.19
26 16 0.38
27 6 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TTAATATAAATATAATATATTAAAA
Found at i:2301545 original size:18 final size:18
Alignment explanation
Indices: 2301522--2301574 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
2301512 ATAATATAAA
2301522 TATATATATATTAAAATT
1 TATATATATATTAAAATT
*
2301540 TATATAAATA-T-AAA-T
1 TATATATATATTAAAATT
2301555 TAT-TAATATATTAAAATT
1 TATAT-ATATATTAAAATT
2301573 TA
1 TA
2301575 AAAATTATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 1 0.03
15 8 0.28
16 4 0.14
17 4 0.14
18 12 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATATATATATTAAAATT
Found at i:2301548 original size:37 final size:33
Alignment explanation
Indices: 2301482--2301574 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 33
2301472 TTATATTAAA
*
2301482 AAATAATTTAATATA-AAAAATATT-T-TAAATAT
1 AAATAA-TTAATATATTAAAAT-TTATATAAATAT
2301514 AATATAAATATATATATATTAAAATTTATATAAATAT
1 AA-AT-AAT-TA-ATATATTAAAATTTATATAAATAT
*
2301551 AAATTATTAATATATTAAAATTTA
1 AAATAATTAATATATTAAAATTTA
2301575 AAAATTATTA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
32 2 0.04
33 18 0.35
34 6 0.12
35 9 0.17
36 8 0.15
37 9 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (33 bp):
AAATAATTAATATATTAAAATTTATATAAATAT
Found at i:2301569 original size:33 final size:31
Alignment explanation
Indices: 2301510--2301574 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 31
2301500 AATATTTTAA
2301510 ATATAATATAAATATATATATATTAAAATTT
1 ATATAATATAAATATATATATATTAAAATTT
2301541 ATATAAATATAAAT-TATTAATATATTAAAATTT
1 ATAT-AATATAAATATA-T-ATATATTAAAATTT
2301574 A
1 A
2301575 AAAATTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 6 0.19
32 10 0.32
33 15 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (31 bp):
ATATAATATAAATATATATATATTAAAATTT
Found at i:2308798 original size:22 final size:25
Alignment explanation
Indices: 2308739--2308814 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 25
2308729 TAAGAGCATA
* *
2308739 TTAATAA-ATTATT-TTTATATATT
1 TTAATAATATTATTATTTAGAAATT
2308762 TTAATAATATTTATTATTTA-AAATT
1 TTAATAATA-TTATTATTTAGAAATT
*
2308787 TTAA-AATA-TATTATTTAGATATT
1 TTAATAATATTATTATTTAGAAATT
2308810 TTAAT
1 TTAAT
2308815 TAATCAACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
22 9 0.20
23 15 0.33
24 5 0.11
25 13 0.28
26 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (25 bp):
TTAATAATATTATTATTTAGAAATT
Found at i:2309715 original size:14 final size:14
Alignment explanation
Indices: 2309696--2309778 Score: 60
Period size: 14 Copynumber: 5.6 Consensus size: 14
2309686 ATGAAGGAAG
2309696 AAAAAAAAGAAAGA
1 AAAAAAAAGAAAGA
2309710 AAAAAAAAGAAAGA
1 AAAAAAAAGAAAGA
* *
2309724 GAAAGAAAGGGAGGAAGA
1 -AAA-AAA--AAGAAAGA
*
2309742 AAAGAAAAGAAA-A
1 AAAAAAAAGAAAGA
**
2309755 AAAAGGAAGAAACGA
1 AAAAAAAAGAAA-GA
2309770 AAATAAAAA
1 AAA-AAAAA
2309779 AATTACAAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
13 10 0.19
14 18 0.35
15 7 0.13
16 8 0.15
17 3 0.06
18 6 0.12
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.01
Consensus pattern (14 bp):
AAAAAAAAGAAAGA
Found at i:2309732 original size:10 final size:10
Alignment explanation
Indices: 2309693--2309731 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
2309683 ATGATGAAGG
2309693 AAGAAA-AAA
1 AAGAAAGAAA
2309702 AAGAAAGAAA
1 AAGAAAGAAA
*
2309712 AAAAAAGAAA
1 AAGAAAGAAA
*
2309722 GAGAAAGAAA
1 AAGAAAGAAA
2309732 GGGAGGAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 6 0.23
10 20 0.77
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:2309761 original size:23 final size:23
Alignment explanation
Indices: 2309689--2309780 Score: 82
Period size: 23 Copynumber: 4.0 Consensus size: 23
2309679 ATTTATGATG
2309689 AAGGAAGAAAA-AAAAGAAAGAAA
1 AAGGAAGAAAAGAAAAGAAA-AAA
** **
2309712 AAAAAAG-AAAGAGAAAG-AAAGG
1 AAGGAAGAAAAGA-AAAGAAAAAA
*
2309734 GAGGAAGAAAAGAAAAGAAAAAA
1 AAGGAAGAAAAGAAAAGAAAAAA
* *
2309757 AAGGAAGAAACGAAAATAAAAAA
1 AAGGAAGAAAAGAAAAGAAAAAA
2309780 A
1 A
2309781 TTACAAATTT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
22 12 0.23
23 37 0.70
24 4 0.08
ACGTcount: A:0.75, C:0.01, G:0.23, T:0.01
Consensus pattern (23 bp):
AAGGAAGAAAAGAAAAGAAAAAA
Found at i:2311495 original size:14 final size:16
Alignment explanation
Indices: 2311476--2311507 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
2311466 AATTATAACC
2311476 ATTAAAA-ATAT-TAT
1 ATTAAAATATATGTAT
2311490 ATTAAAATATATGTAT
1 ATTAAAATATATGTAT
2311506 AT
1 AT
2311508 AATCATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
ATTAAAATATATGTAT
Found at i:2311776 original size:20 final size:21
Alignment explanation
Indices: 2311745--2311784 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
2311735 TTATATATAA
*
2311745 AATTATTTTATATAATTAATC
1 AATTATTTTATAAAATTAATC
2311766 AATTA-TTTATAAAATTAAT
1 AATTATTTTATAAAATTAAT
2311785 AAATGATGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTATTTTATAAAATTAATC
Found at i:2317620 original size:19 final size:18
Alignment explanation
Indices: 2317592--2317646 Score: 69
Period size: 19 Copynumber: 3.1 Consensus size: 18
2317582 AAATTCAATT
2317592 AATTTCAAATTAAATTTTA
1 AATTTCAAATTAAA-TTTA
*
2317611 AATTTTAAATTAAATTTA
1 AATTTCAAATTAAATTTA
*
2317629 AA-TTC-AATTAATTTTA
1 AATTTCAAATTAAATTTA
2317645 AA
1 AA
2317647 CACATAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 12 0.36
17 2 0.06
18 6 0.18
19 13 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTCAAATTAAATTTA
Found at i:2318782 original size:15 final size:15
Alignment explanation
Indices: 2318725--2318788 Score: 53
Period size: 16 Copynumber: 4.3 Consensus size: 15
2318715 TTAAAATTAC
2318725 TATAAATATAAAATA
1 TATAAATATAAAATA
*
2318740 TCTTAAATAT--AAT-
1 T-ATAAATATAAAATA
*
2318753 TATGATATCATAAAATA
1 TAT-AAAT-ATAAAATA
*
2318770 TATAAATATAAAATG
1 TATAAATATAAAATA
2318785 TATA
1 TATA
2318789 CATAAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
12 1 0.03
13 4 0.11
14 5 0.13
15 12 0.32
16 13 0.34
17 3 0.08
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (15 bp):
TATAAATATAAAATA
Done.