Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1444
Parameters: 2 7 7 80 10 50 1000
Length:  31177

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4971--5003
14
2.4
14
100
0
66
93
6
0
0
0.33
6075--7387
34
39.5
34
76
14
334
20
33
12
32
1.90
6368--6420
27
2.0
26
88
3
79
26
37
15
20
1.92
6004--7584
202
7.7
202
87
8
2082
20
33
12
33
1.90
6671--6843
87
2.0
88
94
1
303
20
32
13
32
1.91
7303--7475
87
2.0
88
93
1
294
20
32
13
33
1.91
7416--7604
34
5.4
33
83
12
236
20
34
11
33
1.89
7257--7545
158
1.8
157
93
0
506
20
33
12
33
1.90
7398--7604
71
2.9
69
90
5
299
19
34
12
34
1.89
6221--7604
595
2.3
588
80
13
1442
20
34
12
33
1.90
7416--7604
104
1.8
102
88
4
265
20
34
11
33
1.89
7590--7658
33
2.0
35
94
5
124
26
36
17
20
1.94
7420--7637
104
2.1
102
82
8
253
22
35
12
29
1.91
7658--8363
49
14.8
48
88
6
1001
24
26
18
30
1.98
7658--8363
97
7.4
96
91
4
1017
24
26
18
30
1.98
7653--8363
145
4.9
145
90
5
1049
24
26
18
30
1.98
8270--8660
170
2.3
174
81
7
442
23
26
14
35
1.94
12098--12212
20
5.8
20
89
4
169
25
15
13
45
1.83
14511--14582
28
2.6
28
91
4
110
22
27
22
27
1.99
14569--14685
51
2.3
51
79
8
132
31
27
9
31
1.88
14539--14879
122
2.7
129
78
11
378
28
23
13
34
1.92
23760--23838
33
2.4
34
85
8
119
27
12
12
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26401--26439
19
2.1
19
100
0
78
48
20
10
20
1.78
26443--26481
20
1.9
21
84
5
53
41
20
15
23
1.90
26490--26515
13
2.0
13
100
0
52
30
23
15
30
1.95
26503--26573
20
3.6
20
81
10
76
32
16
18
32
1.94
27403--27938
267
2.0
267
98
0
1036
36
17
20
26
1.94
28491--28537
3
15.7
3
90
0
76
38
0
31
29
1.58

Tables:   1

The End!