genome.fa.s1446.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1446
Parameters: 2 7 7 80 10 50 1000
Length:  105818

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1246--1307	28	2.2	28	88	0	88	32	20	25	20	1.98
1267--1471	79	2.6	79	89	0	302	31	17	26	24	1.97
1478--1650	51	3.4	50	79	4	188	30	13	26	30	1.94
4063--4101	13	3.0	13	92	0	60	35	15	17	30	1.91
4738--4835	42	2.4	42	79	8	112	41	11	29	17	1.84
4928--5287	55	6.3	57	84	7	432	23	21	27	27	1.99
4995--6359	116	11.9	110	81	10	719	25	20	29	25	1.99
5306--6394	116	9.2	119	89	5	1210	25	20	29	24	1.99
5869--5954	27	3.1	27	62	15	68	27	20	25	25	1.99
6198--6300	36	3.2	36	60	28	84	25	19	29	26	1.99
5306--6395	61	18.4	61	85	5	1243	25	20	29	24	1.99
19882--19953	28	2.6	28	93	2	119	26	22	30	20	1.98
19908--20162	79	3.2	79	85	3	329	30	15	27	27	1.96
20093--20279	51	3.7	51	83	5	218	32	11	26	29	1.91
22694--22779	19	4.7	19	72	20	76	36	16	12	34	1.87
22681--22756	32	2.4	32	93	0	125	36	17	14	31	1.90
22712--22738	13	2.1	13	100	0	54	40	14	14	29	1.86
24985--25020	16	2.2	17	90	5	56	58	2	11	27	1.46
28812--29481	166	4.0	165	81	5	672	51	7	9	31	1.61
30368--30510	40	3.6	40	78	3	110	46	15	20	16	1.83
30879--30971	36	2.7	35	80	8	104	27	26	16	29	1.97
34255--34279	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34235--34303	32	2.1	33	94	2	122	34	11	17	36	1.86
34341--34365	13	1.9	13	100	0	50	32	16	16	36	1.90
40827--40899	36	2.0	36	100	0	146	46	13	10	28	1.77
43422--43516	36	2.9	33	84	9	115	30	23	13	32	1.93
44043--44067	13	1.9	13	100	0	50	32	16	20	32	1.94
46701--47034	52	6.3	54	71	16	186	29	25	13	32	1.93
46810--46878	27	2.5	27	88	2	93	24	31	21	21	1.98
46701--47033	104	3.2	103	71	13	291	29	25	13	32	1.93
47018--47093	28	2.7	29	86	8	95	23	34	18	23	1.96
46696--47100	211	1.9	212	88	3	620	27	26	13	31	1.94
46756--47172	107	3.9	106	74	12	345	27	27	15	30	1.96
47049--47249	79	2.5	79	83	3	226	24	29	16	28	1.97
50028--50256	96	2.4	97	93	0	388	26	28	13	31	1.94
52343--53369	509	2.0	510	94	0	1804	32	18	23	25	1.97
55308--56803	747	2.0	747	98	0	2886	32	21	22	23	1.98
60996--61039	10	4.5	10	81	16	56	88	9	0	2	0.59
60994--61039	19	2.5	19	89	10	69	84	13	0	2	0.71
62281--62948	28	23.1	28	82	8	650	28	30	17	23	1.97
62281--62948	145	4.6	143	84	5	792	28	30	17	23	1.97
62281--62947	173	3.9	174	83	6	793	28	30	17	23	1.97
63019--63130	49	2.4	47	80	7	129	21	25	21	31	1.98
63790--63864	20	3.8	20	83	0	96	32	12	13	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66059--66304	97	2.5	97	92	1	386	25	29	14	30	1.95
67253--67697	150	2.9	153	80	5	413	42	17	13	27	1.86
67232--67697	154	3.1	149	78	7	336	42	17	13	26	1.86
68064--68448	166	2.3	167	83	7	464	43	15	9	31	1.78
68792--69085	140	2.1	140	97	0	554	48	17	6	27	1.71
69505--69551	14	3.5	13	85	11	51	19	2	0	78	0.85
69513--69551	14	2.7	15	88	4	53	20	0	0	79	0.73
74777--74801	9	2.8	9	100	0	50	24	20	12	44	1.85
76609--76786	48	3.8	48	87	1	225	35	16	26	21	1.95
76702--76777	25	3.2	24	66	16	68	31	18	28	21	1.97
76719--76792	24	3.2	23	66	14	62	35	16	28	20	1.94
76728--76794	21	3.0	22	65	14	55	34	13	28	23	1.93
76609--76820	48	4.5	47	86	1	214	34	16	25	22	1.95
76609--76786	94	1.9	95	84	2	241	35	16	26	21	1.95
76934--77540	28	21.5	28	85	4	781	23	17	30	29	1.97
78965--78990	13	2.0	13	100	0	52	30	15	15	38	1.88
79049--79101	20	2.7	20	100	0	106	33	20	15	30	1.93
79983--80042	11	5.3	11	87	4	84	0	3	11	85	0.72
79980--80019	19	2.1	19	95	0	71	0	0	12	87	0.54
79968--80042	23	3.3	22	83	5	87	0	5	13	81	0.86
79990--80030	19	2.2	19	86	0	55	0	2	12	85	0.70
92316--92464	52	2.9	52	90	2	228	32	17	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92450--92477	13	2.2	13	100	0	56	39	17	14	28	1.89
92539--92563	13	1.9	13	100	0	50	32	16	16	36	1.90
92518--92583	33	2.0	33	85	2	89	39	16	12	31	1.85
93221--93846	48	12.7	49	79	6	608	30	19	25	24	1.98
93221--93846	100	6.3	100	90	2	856	30	19	25	24	1.98
93866--94017	28	5.3	28	85	5	173	19	15	28	36	1.92
93866--94085	28	7.5	30	77	11	165	24	14	28	33	1.94
93866--94023	86	1.9	84	84	10	214	21	15	27	35	1.93
94573--94628	28	2.0	28	96	0	103	19	25	14	41	1.89

Tables:   1

The End!