genome.fa.s1456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1456
Parameters: 2 7 7 80 10 50 1000
Length:  72433

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15811--15902	1	92.0	1	78	0	76	86	5	7	0	0.69
15810--15902	34	2.7	34	96	3	170	86	5	8	0	0.72
15814--15909	29	3.1	28	76	21	86	83	5	10	1	0.85
21351--21440	1	90.0	1	77	0	72	0	7	5	86	0.70
21351--21439	33	2.7	33	96	3	162	0	7	5	86	0.70
31144--31171	11	2.5	11	100	0	56	25	64	0	10	1.26
36737--36780	13	3.3	13	87	3	61	86	11	2	0	0.66
37891--38019	61	2.1	61	81	5	154	26	27	16	30	1.97
38024--38158	55	2.4	55	86	1	198	26	26	21	25	1.99
38171--38304	55	2.5	54	85	1	187	30	28	19	21	1.98
38605--38658	20	2.8	19	94	2	90	27	14	16	40	1.88
41057--41175	51	2.3	52	86	1	159	31	27	10	30	1.89
41107--41328	78	2.8	79	82	5	268	28	25	13	31	1.94
40978--41251	130	2.1	130	84	2	354	30	24	11	33	1.91
46954--47082	52	2.5	52	93	0	222	27	17	19	35	1.94
46954--47102	52	2.9	51	87	4	176	28	17	19	34	1.95
47170--47230	19	3.6	18	75	25	69	37	18	11	32	1.86
47160--47245	32	2.7	32	94	0	154	38	17	11	32	1.86
47873--48001	48	2.7	47	74	3	116	39	12	10	37	1.78
51355--51418	23	2.8	22	73	17	58	59	4	4	31	1.38
59681--59869	20	8.9	20	77	15	121	42	11	15	30	1.82
59633--59852	91	2.4	91	82	2	273	43	10	15	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59772--59868	40	2.4	40	96	0	176	41	10	17	30	1.83
60747--61175	28	15.1	28	83	9	462	24	18	29	28	1.98
60752--61175	200	2.1	196	86	5	584	23	18	29	28	1.98
62396--62495	10	9.4	10	72	11	58	4	4	10	82	0.94
62395--62438	23	2.0	22	90	4	70	2	4	13	79	0.98
62408--62494	9	9.9	9	73	6	63	3	4	10	81	0.95
62420--62492	34	2.2	33	90	2	110	4	4	9	82	0.94

Tables:   1

The End!