Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1460
Parameters: 2 7 7 80 10 50 1000
Length:  131378

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3036--3091
26
2.1
28
90
6
89
39
0
1
58
1.08
4414--4488
20
3.8
20
78
0
87
34
13
12
40
1.81
4414--4491
40
2.0
39
87
2
111
34
12
12
39
1.82
4504--4559
20
2.8
20
91
0
94
41
14
12
32
1.83
5419--5474
22
2.5
23
88
5
96
16
10
10
62
1.54
18535--18595
12
5.0
12
86
9
88
86
11
1
0
0.63
18536--18597
1
62.0
1
77
0
61
88
9
1
0
0.58
19829--21077
28
43.9
29
89
4
1745
28
32
17
21
1.96
19828--21089
57
22.2
57
87
5
1738
28
32
17
21
1.96
20079--20121
21
2.0
22
95
4
79
39
27
13
18
1.89
21566--21642
20
3.9
19
76
6
73
33
12
12
40
1.82
21566--21643
40
2.0
39
84
2
102
33
12
14
39
1.84
22551--22606
22
2.5
23
94
5
105
17
10
8
62
1.52
22559--22613
22
2.6
21
88
5
58
20
9
9
61
1.52
27296--27341
24
1.9
24
82
8
58
8
10
15
65
1.47
28684--28735
16
3.2
16
75
8
52
51
13
3
30
1.58
29322--29352
2
15.5
2
100
0
62
48
0
0
51
1.00
29880--29906
5
5.4
5
100
0
54
37
0
18
44
1.50
31708--31747
2
20.5
2
94
5
73
47
0
0
52
1.00
33923--33959
2
18.5
2
94
0
65
45
0
54
0
1.00
34336--34378
3
14.7
3
95
4
79
34
30
0
34
1.58
35159--35195
17
2.2
17
95
0
65
51
32
5
10
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38791--38823
2
16.5
2
100
0
66
0
48
0
51
1.00
39713--39745
2
16.5
2
100
0
66
48
0
51
0
1.00
40517--40541
2
12.5
2
100
0
50
48
0
0
52
1.00
41294--41321
3
9.3
3
100
0
56
0
32
0
67
0.91
41321--41349
14
2.1
14
100
0
58
34
0
0
65
0.93
41320--41357
3
13.0
3
88
5
60
34
0
2
63
1.09
42402--42430
2
14.5
2
100
0
58
51
0
0
48
1.00
47242--47277
18
2.0
18
89
10
56
55
0
0
44
0.99
50696--50722
14
1.9
14
100
0
54
77
0
7
14
0.97
51346--51480
67
2.0
67
100
0
270
22
26
17
33
1.96
53130--53163
2
17.0
2
100
0
68
50
0
0
50
1.00
56084--56124
2
20.5
2
100
0
82
48
0
0
51
1.00
59055--59081
2
13.5
2
100
0
54
48
0
0
51
1.00
60308--60343
2
18.0
2
88
0
54
44
0
5
50
1.25
67022--67047
3
8.7
3
100
0
52
65
0
0
34
0.93
67877--67908
17
1.9
16
93
6
55
53
6
0
40
1.26
68134--68165
3
10.7
3
100
0
64
65
0
0
34
0.93
68441--68482
18
2.3
18
87
0
57
69
2
4
23
1.20
69185--69235
17
3.2
16
82
15
61
41
1
43
13
1.55
71075--71191
51
2.2
52
83
10
150
41
1
0
56
1.15
71458--71492
3
11.7
3
100
0
70
68
0
0
31
0.90
77438--77473
18
2.0
18
88
0
54
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77588--77631
22
2.0
21
82
4
52
50
4
2
43
1.35
80426--80477
15
3.8
14
76
19
56
0
19
1
78
0.84
83732--83767
2
18.5
2
94
5
65
47
0
0
52
1.00
84995--85074
32
2.6
32
84
4
101
37
8
32
21
1.84
87032--87059
3
9.3
3
100
0
56
0
32
0
67
0.91
87709--87829
10
13.0
10
66
20
50
37
0
0
61
1.02
87707--87851
9
16.1
9
65
19
54
37
0
1
60
1.05
87721--87855
37
3.9
35
72
18
113
38
0
1
60
1.06
87781--87853
17
4.2
17
75
15
60
34
0
1
64
1.02
87752--87860
35
3.1
36
78
12
102
39
0
0
59
1.04
93779--93815
2
18.5
2
88
0
56
51
0
5
43
1.24
94296--94322
4
6.8
4
100
0
54
77
0
0
22
0.76
97063--97100
18
2.1
18
90
9
60
18
0
0
81
0.69
97071--97106
11
3.2
11
92
4
54
16
0
0
83
0.65
97066--97107
21
2.0
21
86
9
59
21
0
0
78
0.75
97743--97807
23
2.7
25
73
20
66
43
0
0
56
0.99
99122--99154
2
16.5
2
100
0
66
48
0
51
0
1.00
102650--102779
67
2.0
66
95
1
233
27
19
20
33
1.96
104913--104940
4
7.0
4
100
0
56
75
0
25
0
0.81
109493--109540
24
2.0
25
95
4
89
41
20
14
22
1.89
109592--109619
2
14.0
2
100
0
56
50
0
0
50
1.00
110152--110180
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118689--118748
15
3.3
19
80
17
65
38
0
0
61
0.96
118703--118744
8
5.1
8
81
16
50
33
0
0
66
0.92
120394--120446
16
3.4
17
87
10
69
54
0
0
45
0.99
120578--120663
30
2.9
29
84
5
91
53
1
1
44
1.15
120615--120689
30
2.5
32
82
8
86
60
0
0
40
0.97
122528--122564
2
18.5
2
100
0
74
51
0
0
48
1.00
124508--124538
2
15.5
2
100
0
62
51
0
0
48
1.00
128272--128301
12
2.5
12
94
0
51
33
0
3
63
1.11
129454--129488
2
17.5
2
93
0
61
48
2
0
48
1.16
130933--130957
2
12.5
2
100
0
50
48
0
0
52
1.00
130958--130994
2
18.5
2
100
0
74
48
0
51
0
1.00

Tables:   1

The End!