Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1461
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64137
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Found at i:4526 original size:20 final size:20
Alignment explanation
Indices: 4512--4587 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
4502 AAAAAGAGAG
4512 ACAAAAAAAGCAAAAAACAA
1 ACAAAAAAAGCAAAAAACAA
*
4532 ACAAAAAAA-TAAAGAAACAA
1 ACAAAAAAAGCAAA-AAACAA
* *
4552 A-AAAACAA--AAACAACAA
1 ACAAAAAAAGCAAAAAACAA
*
4569 ACAAAAAAAACAAACAAAC
1 ACAAAAAAAGCAAA-AAAC
4588 TGTCGCAACG
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.13
18 9 0.20
19 9 0.20
20 19 0.41
21 3 0.07
ACGTcount: A:0.80, C:0.16, G:0.03, T:0.01
Consensus pattern (20 bp):
ACAAAAAAAGCAAAAAACAA
Found at i:4555 original size:37 final size:39
Alignment explanation
Indices: 4492--4578 Score: 121
Period size: 37 Copynumber: 2.3 Consensus size: 39
4482 GCATCTTCTG
4492 CAAA-AAAAAAAAAAAGAGAGACAAAAAAAGC-AAAA-AA
1 CAAACAAAAAAAAAAAGAGAGACAAAAAAA-CAAAAACAA
*
4529 CAAACAAAAAAATAAAGA-A-ACAAAAAAACAAAAACAA
1 CAAACAAAAAAAAAAAGAGAGACAAAAAAACAAAAACAA
4566 CAAACAAAAAAAA
1 CAAACAAAAAAAA
4579 CAAACAAACT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
35 1 0.02
36 13 0.29
37 19 0.42
38 12 0.27
ACGTcount: A:0.82, C:0.11, G:0.06, T:0.01
Consensus pattern (39 bp):
CAAACAAAAAAAAAAAGAGAGACAAAAAAACAAAAACAA
Found at i:4570 original size:13 final size:12
Alignment explanation
Indices: 4523--4586 Score: 76
Period size: 12 Copynumber: 5.2 Consensus size: 12
4513 CAAAAAAAGC
4523 AAAAAACAAACA
1 AAAAAACAAACA
* *
4535 AAAAAATAAAGA
1 AAAAAACAAACA
4547 AACAAAA-AAACA
1 AA-AAAACAAACA
4559 AAAACAACAAACAA
1 AAAA-AACAAAC-A
4573 AAAAAACAAACA
1 AAAAAACAAACA
4585 AA
1 AA
4587 CTGTCGCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
11 2 0.04
12 23 0.51
13 15 0.33
14 5 0.11
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAAACAAACA
Found at i:4583 original size:4 final size:4
Alignment explanation
Indices: 4512--4587 Score: 55
Period size: 4 Copynumber: 18.5 Consensus size: 4
4502 AAAAAGAGAG
* * * * *
4512 ACAA AAAA AGCAA A-AA ACAA ACAA AAAA ATAA AGAA ACAA AAAA ACAA
1 ACAA ACAA A-CAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA
* *
4560 AAACA ACAA ACAAA AAAA ACAA ACAA AC
1 ACA-A ACAA AC-AA ACAA ACAA ACAA AC
4588 TGTCGCAACG
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
3 3 0.05
4 44 0.79
5 9 0.16
ACGTcount: A:0.80, C:0.16, G:0.03, T:0.01
Consensus pattern (4 bp):
ACAA
Found at i:7827 original size:19 final size:21
Alignment explanation
Indices: 7803--7855 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
7793 AGCGATACAT
7803 TGTATCGATACAA-CACT-TC
1 TGTATCGATACAATCACTGTC
* *
7822 TGTATCGATACAATTACTGTT
1 TGTATCGATACAATCACTGTC
7843 TGTATCGATACAA
1 TGTATCGATACAA
7856 ATTGTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (21 bp):
TGTATCGATACAATCACTGTC
Found at i:9750 original size:49 final size:49
Alignment explanation
Indices: 9661--9948 Score: 371
Period size: 49 Copynumber: 5.9 Consensus size: 49
9651 GGTGGTATCT
* *
9661 TCTTCTAAGTCCAATATCGCTAACC-TGAATCAGCATATTGGCACCTTCA
1 TCTT-TAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
*
9710 TCTTTAAGTCCGATATCGCTGACCTTGAATCAACATATTGGCACCTTCA
1 TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
* *
9759 TCTTTAAGTCCGATATCGCTGACCTTGAATCAACATACTGGCACCTTCA
1 TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
* * * * * * *
9808 TCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCGCCTTCA
1 TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
* * * * *
9857 TCTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
* * * *
9906 TCTTTAAGTCCGCTATCGTTGGCCTTAAATCAGCATATTGGCA
1 TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCA
9949 TCTTTAACAT
Statistics
Matches: 216, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
48 18 0.08
49 198 0.92
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (49 bp):
TCTTTAAGTCCGATATCGCTGACCTTGAATCAGCATATTGGCACCTTCA
Found at i:10021 original size:47 final size:47
Alignment explanation
Indices: 9967--10100 Score: 178
Period size: 47 Copynumber: 2.9 Consensus size: 47
9957 ATTCCTAAGC
* ***
9967 CTAATGTCGCTGCCCTTGTCTCAGCACATTGGCATTCTTCTTCAACT
1 CTAATGTCGCTGCCCATAAATCAGCACATTGGCATTCTTCTTCAACT
*
10014 CTAATGTCGCTGGCCATAAATCAGCACATTGGCATTCTTCTTCAACT
1 CTAATGTCGCTGCCCATAAATCAGCACATTGGCATTCTTCTTCAACT
* * * **
10061 CTAATGTCGCTGGCCATGAATCAACACATTATCATTCTTC
1 CTAATGTCGCTGCCCATAAATCAGCACATTGGCATTCTTC
10101 GCATCTTCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (47 bp):
CTAATGTCGCTGCCCATAAATCAGCACATTGGCATTCTTCTTCAACT
Found at i:10971 original size:26 final size:26
Alignment explanation
Indices: 10930--10983 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
10920 TAAGTAAATG
10930 TATCGATACAAAGATCAATGTATCGA
1 TATCGATACAAAGATCAATGTATCGA
** **
10956 TATCGATACATTGATCTTTGTATCGA
1 TATCGATACAAAGATCAATGTATCGA
10982 TA
1 TA
10984 CATCTCGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (26 bp):
TATCGATACAAAGATCAATGTATCGA
Found at i:11024 original size:15 final size:15
Alignment explanation
Indices: 11004--11032 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10994 TTTTACCTAG
11004 ATGTATCGATACATT
1 ATGTATCGATACATT
11019 ATGTATCGATACAT
1 ATGTATCGATACAT
11033 ACAGGCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (15 bp):
ATGTATCGATACATT
Found at i:12468 original size:21 final size:21
Alignment explanation
Indices: 12444--12483 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
12434 TATTGCATGT
12444 TAAAAAATTATTT-TAAAATAC
1 TAAAAAATT-TTTCTAAAATAC
*
12465 TAAAAGATTTTTCTAAAAT
1 TAAAAAATTTTTCTAAAAT
12484 TTTTTCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (21 bp):
TAAAAAATTTTTCTAAAATAC
Found at i:14661 original size:13 final size:13
Alignment explanation
Indices: 14643--14668 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14633 TACACCAAGT
14643 ATGTATCGATACA
1 ATGTATCGATACA
14656 ATGTATCGATACA
1 ATGTATCGATACA
14669 CAAAAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:16920 original size:21 final size:21
Alignment explanation
Indices: 16887--16931 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
16877 TTGCAAGTTG
*
16887 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
16909 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
16929 AAA
1 AAA
16932 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:18762 original size:15 final size:15
Alignment explanation
Indices: 18744--18773 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
18734 TCAAATTGGG
18744 GAAGCTCAAAATGAA
1 GAAGCTCAAAATGAA
*
18759 GAAGCTCCAAATGAA
1 GAAGCTCAAAATGAA
18774 ATTGATGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.17, G:0.20, T:0.13
Consensus pattern (15 bp):
GAAGCTCAAAATGAA
Found at i:21033 original size:20 final size:20
Alignment explanation
Indices: 20990--21035 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
20980 AAATCTTTTG
20990 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
21011 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
21031 CAAAA
1 CAAAA
21036 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:23409 original size:13 final size:13
Alignment explanation
Indices: 23391--23416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23381 TACACCAAGT
23391 ATGTATCGATACA
1 ATGTATCGATACA
23404 ATGTATCGATACA
1 ATGTATCGATACA
23417 CAAAAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:29180 original size:16 final size:16
Alignment explanation
Indices: 29159--29191 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
29149 ACTATTGAAA
29159 GACATGTGCCCTTTTT
1 GACATGTGCCCTTTTT
29175 GACATGTGCCCTTTTT
1 GACATGTGCCCTTTTT
29191 G
1 G
29192 TATATCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.42
Consensus pattern (16 bp):
GACATGTGCCCTTTTT
Found at i:36068 original size:73 final size:73
Alignment explanation
Indices: 35981--36127 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
35971 GAACGGTCTG
* *
35981 CTTGTCTTGTATTGGTGTTCCGATTCATCGTCGGAACCTCAGTACTTTTTAGAATATTGCCAAAT
1 CTTGTCTTGTATTGGTGTTCCGATTCATAGTCGGAACCTCAGTACTTTATAGAATATTGCCAAAT
36046 TACGGGCT
66 TACGGGCT
*
36054 CTTGTCTTGTATTGGTGTTCCGATTCATAGTCGGAACCTCCGTACTTTATAGAATATTGCCAAAT
1 CTTGTCTTGTATTGGTGTTCCGATTCATAGTCGGAACCTCAGTACTTTATAGAATATTGCCAAAT
36119 TACGGGCT
66 TACGGGCT
36127 C
1 C
36128 ATTAATTTCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.37
Consensus pattern (73 bp):
CTTGTCTTGTATTGGTGTTCCGATTCATAGTCGGAACCTCAGTACTTTATAGAATATTGCCAAAT
TACGGGCT
Found at i:41809 original size:21 final size:21
Alignment explanation
Indices: 41756--41811 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
41746 GTCTTAAAAT
* *
41756 TTTTTATTTATATTTAATTAA
1 TTTTTATATATTTTTAATTAA
*
41777 TTTTTAAATATTTTTAAATTAA
1 TTTTTATATATTTTT-AATTAA
*
41799 -TTTTATCTATTTT
1 TTTTTATATATTTT
41812 CTTTATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTATATATTTTTAATTAA
Found at i:47065 original size:52 final size:52
Alignment explanation
Indices: 46990--47144 Score: 163
Period size: 52 Copynumber: 2.9 Consensus size: 52
46980 CCTCGATTGT
* **
46990 GAAAAATTGGTGTTTTTGGAAATAAAATCGAAGTTGGAGTATCCCTGATTAAAG
1 GAAAAATTGGTG--TTTGAAAATAAAATCGGGGTTGGAGTATCCCTGATTAAAG
**
47044 G-AAAATTGGTGCTTTGAAAATAAAATCGGGGTTGGAGTATCGCC-GATT-GTG
1 GAAAAATTGGTG-TTTGAAAATAAAATCGGGGTTGGAGTATC-CCTGATTAAAG
* * * *
47095 GAAAAATTAGTGTTTTAGCAATAAAACCGGGGTTGGAGTATCCCTGATTA
1 GAAAAATTGGTGTTTGA-AAATAAAATCGGGGTTGGAGTATCCCTGATTA
47145 TGAGAAATCA
Statistics
Matches: 86, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
51 8 0.09
52 65 0.76
53 12 0.14
54 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (52 bp):
GAAAAATTGGTGTTTGAAAATAAAATCGGGGTTGGAGTATCCCTGATTAAAG
Found at i:47180 original size:51 final size:51
Alignment explanation
Indices: 47003--47189 Score: 153
Period size: 52 Copynumber: 3.6 Consensus size: 51
46993 AAATTGGTGT
* ** * *** *
47003 TTTTGGAAATAAAATCGAAGTTGGAGTATCCCTGATTAAAGG-AAAATTGGTG
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCC-GATT-ATGGAAAAATCAATA
* * * * * * *
47055 CTTTGAAAATAAAATCGGGGTTGGAGTATCGCCGATTGTGGAAAAATTAGTG
1 TTTTGGAAATAAAACCGGGGTTGGAGTATC-CCGATTATGGAAAAATCAATA
* * *
47107 TTTTAGCAATAAAACCGGGGTTGGAGTATCCCTGATTAT-GAGAAATCAATA
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCC-GATTATGGAAAAATCAATA
*
47158 TTTTGGAAATAAAGCCGGGGTTGGAGTATCCC
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCC
47190 CTCGGAGGTA
Statistics
Matches: 112, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
51 41 0.37
52 69 0.62
53 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (51 bp):
TTTTGGAAATAAAACCGGGGTTGGAGTATCCCGATTATGGAAAAATCAATA
Found at i:47236 original size:27 final size:28
Alignment explanation
Indices: 47173--47250 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
47163 GAAATAAAGC
***
47173 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCAATGAGGTAA
* * *
47201 CGAGGTTGGAGTATCCCCGATGA-TTAA
1 CGGGGTTGGAGTATCCCCAATGAGGTAA
47228 CGGGGTTGGAGTATCCCCAATGA
1 CGGGGTTGGAGTATCCCCAATGA
47251 AAAATTGATG
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAATGAGGTAA
Found at i:47270 original size:103 final size:105
Alignment explanation
Indices: 47122--47324 Score: 266
Period size: 103 Copynumber: 1.9 Consensus size: 105
47112 GCAATAAAAC
* * * *
47122 CGGGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCTCA-TATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
* ** *
47187 CCCCTCGGAGGTAACGAGGTTGGAGTATCCCCGATGATTAA
65 CCCCTCAGAAATAACGAGGTTGGAATATCCCCGATGATTAA
** * *
47228 CGGGGTTGGAGTATCCC-CA-ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTC
1 CGGGGTTGGAGTATCCCTCATATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
*
47291 CCCTCAGAAATAACGGGGTTGGAATATCCCCGAT
66 CCCTCAGAAATAACGAGGTTGGAATATCCCCGAT
47325 TGTGAAAAGT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
103 66 0.79
105 1 0.01
106 17 0.20
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (105 bp):
CGGGGTTGGAGTATCCCTCATATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
CCCTCAGAAATAACGAGGTTGGAATATCCCCGATGATTAA
Found at i:47370 original size:51 final size:51
Alignment explanation
Indices: 47308--47428 Score: 172
Period size: 51 Copynumber: 2.4 Consensus size: 51
47298 AAATAACGGG
* * *
47308 GTTGGAATATCCCCGATTGT-GAAAAGTCAGTGCTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGGAAAA-TCAGTGCTTTAGAAATAAAATCGGA
** *
47359 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGGAAAATCAGTGCTTTAGAAATAAAATCGGA
47410 GTTGGAGTATCCCCGATTA
1 GTTGGAGTATCCCCGATTA
47429 AGAGAAATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 58 0.92
52 5 0.08
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGGAAAATCAGTGCTTTAGAAATAAAATCGGA
Found at i:47444 original size:51 final size:51
Alignment explanation
Indices: 47345--47473 Score: 163
Period size: 51 Copynumber: 2.5 Consensus size: 51
47335 CAGTGCTTTG
* *
47345 GAAATAAAATCGGAGTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTA
1 GAAATAAAATCGGAGTTGGAGTATCCCCGATTAAGGAAAATGGATGTTTTA
* *
47396 GAAATAAAATCGGAGTTGGAGTATCCCCGATTAA-GAGAAATTGATGTTTTG
1 GAAATAAAATCGGAGTTGGAGTATCCCCGATTAAGGA-AAATGGATGTTTTA
* * *
47447 GAAATGAAACCGG-GATTAGAGTATCCC
1 GAAATAAAATCGGAG-TTGGAGTATCCC
47474 TTCGGAAATA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 3 0.04
51 66 0.96
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (51 bp):
GAAATAAAATCGGAGTTGGAGTATCCCCGATTAAGGAAAATGGATGTTTTA
Found at i:47548 original size:79 final size:79
Alignment explanation
Indices: 47414--47584 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 79
47404 ATCGGAGTTG
** * ** * *
47414 GAGTATCCCCGATTAAGAGAAATTGATGTTTTGGAAATGAAACCGGGATTAGAGTATCCCTTCGG
1 GAGTATCCCCGATTAAGAGAAATCAATATTTTAAAAATGAAACAGGGATTAGAGTATCCCCTCGG
47479 AAATAACGAGGTTA
66 AAATAACGAGGTTA
* * *
47493 GAGTATCCCCGATTATGAGAAATCAATATTTTAAAAAT-AAAGCAGGGGTTGGAGTATCCCCTCG
1 GAGTATCCCCGATTAAGAGAAATCAATATTTTAAAAATGAAA-CAGGGATTAGAGTATCCCCTCG
* *
47557 GAAATAACGGGGTTG
65 GAAATAACGAGGTTA
47572 GAGTATCCCCGAT
1 GAGTATCCCCGAT
47585 GATTAATAGG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 3 0.04
79 76 0.96
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (79 bp):
GAGTATCCCCGATTAAGAGAAATCAATATTTTAAAAATGAAACAGGGATTAGAGTATCCCCTCGG
AAATAACGAGGTTA
Found at i:47710 original size:51 final size:52
Alignment explanation
Indices: 47595--47717 Score: 178
Period size: 51 Copynumber: 2.4 Consensus size: 52
47585 GATTAATAGG
* *
47595 GTTGGAGTATCCCCGATTGAGAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAGAAATTAGTG-TTTTTGAAAATAAAATCGGA
*
47648 GTTGGAGTATCCCCGATT-ATAGAAAATTAGTG-TTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAG-AAATTAGTGTTTTTGAAAATAAAATCGGA
*
47699 GTTGGAATATCCCCGATTG
1 GTTGGAGTATCCCCGATTG
47718 CGAAGAATTG
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
51 35 0.55
52 3 0.05
53 26 0.41
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGAGAGAAATTAGTGTTTTTGAAAATAAAATCGGA
Found at i:49623 original size:55 final size:55
Alignment explanation
Indices: 49534--50154 Score: 791
Period size: 55 Copynumber: 11.0 Consensus size: 55
49524 ATAAAGTGTA
* * *
49534 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
49589 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
49644 TCTTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
49699 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * * *
49760 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
49815 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
49870 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* *
49931 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
49986 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
50047 TCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAATGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
50102 TCCTAG-ACTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TCCT-GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
50155 AGAAGGCGTC
Statistics
Matches: 503, Mismatches: 38, Indels: 50
0.85 0.06 0.08
Matches are distributed among these distances:
54 11 0.02
55 322 0.64
56 19 0.04
60 8 0.02
61 143 0.28
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:49749 original size:29 final size:29
Alignment explanation
Indices: 49606--49749 Score: 85
Period size: 28 Copynumber: 5.2 Consensus size: 29
49596 CTTTGAGGAC
49606 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
* * * *
49635 T-AAGAGGTGTCTTA-C-TCTT-TGAGGAC-T
1 TGAA-AGGTG-C-CACCAACTTGTGTGGGCTT
* *
49662 GGAAA-ATGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
** *
49690 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC--
1 TGAAAGGTG-CCACCAACTTGTGTGGG-CTT
49716 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
49745 TGAAA
1 TGAAA
49750 AGAAAAAGCA
Statistics
Matches: 81, Mismatches: 18, Indels: 32
0.62 0.14 0.24
Matches are distributed among these distances:
24 1 0.01
25 5 0.06
26 17 0.21
27 13 0.16
28 20 0.25
29 19 0.23
30 5 0.06
31 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:49819 original size:116 final size:112
Alignment explanation
Indices: 49533--50185 Score: 763
Period size: 116 Copynumber: 5.7 Consensus size: 112
49523 AATAAAGTGT
* * ***
49533 ATCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGAAATCCTGCTC
**
49597 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG-
65 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAAATGC
* * * ***
49644 -TCTTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAATCCTGCTCT
* *
49708 TTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAG-AAATGC
* *
49759 ATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACATCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAATCCTGCTCT
* *
49824 TTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT--GAAAGGC
66 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAAATGC
49869 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTGTCC
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GA-AA----TCC
49934 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--GAAATGC
60 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAAATGC
* * *
49985 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCC
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GA-AA----TCC
*
50050 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT--GAAATGC
60 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAAATGC
* * *
50101 GTCCTAG-ACTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCGTC
1 ATCCT-GCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GA-AA----TC
50165 CTGCTCTTTGAGGACT-AAAGG
59 CTGCTCTTTGAGGACTGAAAGG
50186 GCGAAAGGAG
Statistics
Matches: 497, Mismatches: 29, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
110 148 0.30
111 7 0.01
112 1 0.00
113 3 0.01
114 2 0.00
115 9 0.02
116 322 0.65
117 5 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (112 bp):
ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAATCCTGCTCT
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAAATGC
Found at i:49826 original size:171 final size:170
Alignment explanation
Indices: 49534--50406 Score: 881
Period size: 171 Copynumber: 5.1 Consensus size: 170
49524 ATAAAGTGTA
* * *
49534 TCCTACTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT-----G-AAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
* ** * *
49593 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCTTACTCTTTGA
66 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGACGTCCTGCTCTTTGA
*
49657 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
130 GGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
49699 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
* * *
49764 GCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACATCCTGCTCTTTGAG
66 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAG
*
49829 GACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCA
131 GACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
49870 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
*
49935 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAATG-CGTCCTGCTCTTTGA
66 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-GACGTCCTGCTCTTTGA
*
49999 GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
130 GGACTGAAAA-TGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
50047 TCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTT-----G-AAATGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
*
50106 AG-ACTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCGTCCTGCT
66 -GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AA--AG-A--CGTCCTGCT
** * * *
50170 CTTTGAGGACT-AAAGGGCGA--AA--------GG---AGAGA-GCG
124 CTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* **
50202 TCATGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
* * *
50266 ACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTC
66 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG----A-CGTCCTGCTC
** *
50331 TTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
125 TTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
*
50383 TCCTGCTCTTTGAGGACTAAAAAG
1 TCCTGCTCTTTGAGGACTGAAAAG
50407 CGGAAGAAGA
Statistics
Matches: 590, Mismatches: 65, Indels: 90
0.79 0.09 0.12
Matches are distributed among these distances:
155 44 0.07
156 1 0.00
157 2 0.00
158 2 0.00
159 1 0.00
160 73 0.12
161 8 0.01
163 2 0.00
165 44 0.07
170 6 0.01
171 295 0.50
172 7 0.01
173 3 0.01
174 1 0.00
175 3 0.01
176 5 0.01
177 68 0.12
179 1 0.00
180 2 0.00
181 22 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (170 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAG
GACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:50152 original size:29 final size:29
Alignment explanation
Indices: 50064--50152 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 29
50054 CTTTGAGGAC
* *
50064 TGAAAGGTGCCACTAACTTGTGTGGGCTT
1 TGAAAAGTGCCACCAACTTGTGTGGGCTT
** * *
50093 TG-AAA-TGCGTCCTAGACTT-TGAGGAC--
1 TGAAAAGTGCCACC-A-ACTTGTGTGGGCTT
50119 TGAAAAGTGCCACCAACTTGTGTGGGCTT
1 TGAAAAGTGCCACCAACTTGTGTGGGCTT
50148 TGAAA
1 TGAAA
50153 GGAGAAGGCG
Statistics
Matches: 43, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
26 6 0.14
27 13 0.30
28 13 0.30
29 11 0.26
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (29 bp):
TGAAAAGTGCCACCAACTTGTGTGGGCTT
Found at i:50274 original size:60 final size:59
Alignment explanation
Indices: 50205--50400 Score: 295
Period size: 60 Copynumber: 3.3 Consensus size: 59
50195 GAGAGCGTCA
*
50205 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
1 TGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCC
* * * *
50265 TACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTG-GAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCATCC
50326 TGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCATCC
50386 TGCTCTTTGAGGACT
1 TGCTCTTTGAGGACT
50401 AAAAAGCGGA
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
59 7 0.06
60 88 0.72
61 28 0.23
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (59 bp):
TGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCC
Found at i:50308 original size:160 final size:155
Alignment explanation
Indices: 50050--50345 Score: 432
Period size: 160 Copynumber: 1.9 Consensus size: 155
50040 GAAGGTGTCC
* * *
50050 TGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGTGGGCTTTGAAATGCGTCCTAGACTTTGA
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACACTTTGA
* * * * *
50115 GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCGTCCTGCTCTTTGAGGAC
66 GGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAC
50180 TAAAGGGCGAAAGGAGAGAGCGTCA
131 TAAAGGGCGAAAGGAGAGAGCGTCA
* *
50205 TGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTACT
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCGTCCTACA
50269 CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTT
60 CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTT
*
50334 GAGGACTGAAGG
125 GAGGACTAAAGG
50346 TGCCACCAAC
Statistics
Matches: 124, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
155 38 0.31
156 3 0.02
159 1 0.01
160 82 0.66
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (155 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACACTTTGA
GGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGAC
TAAAGGGCGAAAGGAGAGAGCGTCA
Found at i:51386 original size:15 final size:14
Alignment explanation
Indices: 51366--51401 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
51356 CTTAAGCATA
*
51366 TTTTTTTTTGTTGTT
1 TTTTTTTTTGCT-TT
51381 TTTTTTTTTGCTTT
1 TTTTTTTTTGCTTT
51395 TTTTTTT
1 TTTTTTT
51402 AGAAAAGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTGCTTT
Found at i:51400 original size:12 final size:12
Alignment explanation
Indices: 51367--51401 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
51357 TTAAGCATAT
*
51367 TTTTTTTTGTTGT
1 TTTTTTTT-TTGC
51380 TTTTTTTTTTGC
1 TTTTTTTTTTGC
51392 TTTTTTTTTT
1 TTTTTTTTTT
51402 AGAAAAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTGC
Done.