genome.fa.s1464.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1464
Parameters: 2 7 7 80 10 50 1000
Length:  59853

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607--639	15	2.1	16	88	5	50	15	21	12	51	1.75
4699--4747	24	2.0	25	88	4	73	24	10	16	48	1.76
6575--6639	32	2.0	32	88	11	96	29	15	16	38	1.90
6596--6621	13	2.0	13	100	0	52	30	15	15	38	1.88
6703--6766	33	1.9	33	84	6	85	31	17	17	34	1.93
7485--7535	20	2.5	20	90	6	77	33	15	13	37	1.87
7567--7619	19	2.8	19	91	0	79	41	15	15	28	1.87
8212--8253	22	1.9	22	90	0	66	21	33	4	40	1.74
16287--16352	33	2.0	33	85	5	89	33	15	15	36	1.88
16385--16444	20	3.0	20	82	7	86	38	18	11	31	1.87
27395--27443	20	2.4	20	86	10	64	73	2	8	16	1.16
27414--27446	14	2.4	14	94	0	57	78	0	9	12	0.95
27843--27887	18	2.6	17	86	10	65	42	20	31	6	1.77
28140--28227	43	2.0	43	82	0	104	36	31	17	14	1.90
28609--28676	19	3.9	19	78	21	85	35	11	14	38	1.83
28630--28654	13	1.9	13	100	0	50	36	16	16	32	1.90
28611--28673	32	2.0	32	96	0	117	34	12	15	36	1.86
28716--28741	13	2.0	13	100	0	52	30	15	15	38	1.88
28696--28762	33	2.0	33	88	0	98	25	14	16	43	1.86
31112--31498	52	7.4	52	70	13	195	30	24	11	33	1.91
31112--31233	51	2.4	51	87	5	165	31	20	12	35	1.90
31219--31291	27	2.7	26	87	10	94	27	35	16	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31481--31557	28	2.8	28	86	7	95	24	35	18	22	1.96
31111--31606	265	1.9	262	87	2	724	29	26	12	32	1.93
33540--33819	149	1.9	149	82	5	361	29	14	16	39	1.88
43671--43721	20	2.5	20	90	6	77	33	15	13	37	1.87
43756--43817	33	1.9	32	83	9	81	45	16	11	27	1.81
44342--44397	22	2.5	22	94	0	94	23	35	3	37	1.72
52366--52425	20	3.0	20	78	7	77	36	18	15	30	1.91
52366--52421	19	2.8	20	86	2	78	37	17	16	28	1.91
52406--52432	13	2.1	13	100	0	54	40	14	14	29	1.86
55614--55849	41	5.6	43	75	12	127	16	28	17	37	1.92
55625--55778	41	3.7	42	81	8	163	14	29	18	38	1.90
57777--57824	21	2.2	22	82	10	64	43	37	8	10	1.69
57782--57811	11	2.9	10	90	9	51	50	36	10	3	1.53

Tables:   1

The End!