Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1466
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 620546
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
File 2 of 3
Found at i:393840 original size:475 final size:476
Alignment explanation
Indices: 389106--413351 Score: 33372
Period size: 476 Copynumber: 51.0 Consensus size: 476
389096 AGTTTTGTGA
* * *
389106 TTTTCTTCGCCCTTATTTTCCTTAAAATTAAAGTTCATCACTTAAATAAGACAAGGATC-AGTTC
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGA-TTC
* * *
389170 TCGTAACAATCTCCATTGTTTCCAAGATTAGGACCCAAAAACACATTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * * * *
389235 GACATTGACGCTTTGGTGTCGCAAGAGAA-CTTTTCTTTCCACCATTTTTCATAGAATCAATGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
** ** * * *
389299 TACCTCCGAAATAAGACCTACATGAACGGTCATACTAATCCCCATTCTTTTCGTGATTAGGCGCC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * *
389364 ATAAATGTAGTCATCTAATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAGGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
389429 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
389494 TTCGTCATTAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
* *
389559 TGATTTTCGTTTCATTG--ATC
455 TGATTTTCTTTTCATGGAAATC
** * * * * *
389579 TTTTCTTTTTCCTTATTTTCCTTAAAAATTAAAGTTCATCCCTTCAATTAGACAAGTATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * **
389644 TCGCAACAATCTCCATTCTTATCAAGATTGGGACCCAAAAACACATTCCCTTGTTTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * **
389709 GACATTGACGCTTTGGTGTCAGAAGAAAAGCTTTTCTTTTTACCGTTTTTGATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * *
389774 TGCTTCTTAAATAAGACAAATATGAGTGGCCACACTAATCCCCATTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * * *
389839 ATAAACGTAGTCTTCGCATAAGGATGCCTAATAATGAAGCTTTAGTTTCTTAAGAAAGCCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
389904 TCCGACCATTTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCCAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* *
389969 TTCGTCATTAGTTCTGTG---A--AACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
390029 TGATTTTCTTTTCATGGAAAAC
455 TGATTTTCTTTTCATGGAAATC
* * * **
390051 TTTTCTTTGCCCTTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAGAAGCATTTATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
390116 CGTAACAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCGTTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* *
390181 ACTTTGACGCTTTGGGGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
390246 GCGTCTTAAAA-AATG-CAAACACGAATGGTCATACCAATCCTCATTCTTTTTGGGATTAGGCAC
196 ACCTC-TAAAATAA-GACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * * * *
390309 CGTAAACTTAGTCTTCGCACAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * *
390374 TTCCGTCTAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAACCAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
** *
390439 GTTCGCCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
390504 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** *
390527 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGATC-AGCATCGATT
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGA-CAAGCATCGATT
* * * * *
390591 CTCGTAATAATCTCCGTTGTTTTCAAGATTGGGACCCAAAAATACATTCCTTTCATTAGGATACA
64 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACA
** * * * *
390656 CGACATTGACATTTTGGTGTCACAGGAAAA-CTTTTCATTCCACCATTTTTCATAGAATCAACGT
129 CGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGT
* * *
390720 TTACCTCTAAGATAAGACAAACGTGAATGGTCATACTAATCCCCATTCTTTTCTGGATTAGGCAC
194 TTACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* *
390785 CATAAACGTAGTTATCTCATAAGGATGCATGATATTGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * *
390850 TTCCGACCAATTATTATAAAGTCTATGTTCCTACCGAAAATCAGCC-AACAAAGGATTCTAGTAT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAAC-AAGGATTCTAGTAT
* *
390914 TGTTCGTCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATATT
388 TGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATT
390979 GATGATTTTCTTTTCATGGAAATC
453 GATGATTTTCTTTTCATGGAAATC
* * *
391003 TTTTCTTTGCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAATTAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * *
391068 CGTAACAATCTCTATTCTTTTCAAGATTGGGACCCAAAAAGACATTCCCTTCATTAGGATATATG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * *
391133 ACGTTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCATCGTTTTTTATAGAATCAAAATTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
391198 ACCTCTATAGTAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTTTGGGATTCGGCACC
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTC-TTTTCGGGATTAGGCACC
* * *
391263 ATCAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAAAAAGGCTTTCC
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * * * * *
391328 ACCGACCAATTATTATATAGTTTATGTTCGTGCCTAAAATAAGCCAAACAAGGATTATGGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* *
391393 TTCACCATTAGTTTTGTGATTAGGAACTACAAATACATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
391458 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* * *
391480 TTTT-TTGCGCCCTTATTTTCCTTAAAACCAAAGTTCATTACTTAAATAAGACAAGCATCGATTC
1 TTTTCTT-TGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * **
391544 TCGTAACAATCTCCATTCTTATCAAGATTGGGACCCAAAAACACGTTCCCTTGTTTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * **
391609 GACATTGACGCTTTGGTGTAAGAAGAAAAGCTTTTCTTTTTACCGTTTTTGATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * *
391674 TGCTTCTTAAATAAGACAAATATGAGTGGCCACACTAATCCCCATTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * *
391739 ATAAACGTAGTCTTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGCCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
391804 TCCGACCATTTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACAAGGATTCCAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* *
391869 TTCGTCATTAGTTCTGTG---A--AACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
391929 TGATTTTCTTTTCATGGAAAAC
455 TGATTTTCTTTTCATGGAAATC
* * * **
391951 TTTTCTTTGCCCTTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGAGAAGCATTTATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
392016 CGTAACAATC-CCTATTCTTTTCAAGATTGGGGCCCAAAAACACATTCCCTTCGTTAGGATACAC
66 CGTAACAATCTCC-ATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* *
392080 GACTTTGACGCTTTGGGGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * *
392145 TGCGTCTTAAAA-AAGGCAAACACGAATGGTCATACCAATCCTCATTCTTTTTGGGATTAGGCAC
195 TACCTC-TAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * *
392209 CATAAACGTAGTCTTCGCACAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* *
392274 TTCCGTCCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAACCAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
** * *
392339 GTTCGCCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATACTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
*
392404 ATGATTTTTTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** * *
392427 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACCAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * * *
392492 TCGTAATAATCTCCGTTGTTTTGAAGATTGGGACCCAAAAATACATTCCTTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** * * * *
392557 GACATTGACATTTTGGTGTCACAGGAAAA-CTTTTCATTCCACCATTTTTCATAGAATCAACGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
392621 TACCTCTAAGATAAGACAAACGTGAATGGTCATACTAATCCCCATTCTTTTCTGGATTACGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
*
392686 ATAAACGTAGTCATCTCATAAGGATGCATGATATTGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
392751 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATCAGCCAACCAAGGATTCTAGTATTC
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
*
392816 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
392881 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* **
392903 TTTTCTTTGCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTTTCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * * * *
392968 CGTAACAATCTCTATACCTTTCAAGATTGGGACCCAAAAAGACATTCCCTTCATTAGGATATATG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
*
393033 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTAT-ATAGAATCAAAATT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTT-TGATAGAATCAAAGTT
* * * *
393097 TACCTCTATAGTAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTTTGGGATTCGGCAC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTC-TTTTCGGGATTAGGCAC
* *
393162 CATCAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAAAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
** * * * * * *
393227 CACCGACCAATTATTATATAGTTTATGTTCGTGCCTAAAATAAGCCAAACAAGGATTATGGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * *
393292 GCTCACCATTAGTTTTGTGATTAGGAACTACAAATACATTATCCTCATTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
393357 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** *
393380 TTTTCTGCGCCCTTATTTTCCTTAAAATCAAAGTTCATTACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * * *
393445 CGTAACAATCTCCATTCTTTTCAAAATTGGGACCCAAAAGCATATTCCCTTTAGTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * * *
393510 TCATTAATGCCTTGGTGTCACAAGAAAA-CTTTTCACTCCACCATTTTTTATATAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* *
393574 ACCTCTGAAATAAGACAAACATGAATGGTCATACTAATTCCCATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
393639 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAAGCTTTTTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* *
393704 CCGACCAATTATTATAAAGTCTATGATCCTGCCTAAAATGAGCCAAACAAGGATTATAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * *
393769 TCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTGAA
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
393834 GATTTTCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
** * *
393855 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCAATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * *
393920 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAATAAAATCCCTTCATTAGGATTCAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * ** ** * *
393985 AACGTTGACGCTTTGGTGTCGGAAGAAAAGCTTTTTGTTCTACCGTTTTTGATCGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * *
394050 TGCATCTTAAATACA-ACAAACGTGAATGGTCTTAAC-AATCCCCATTCTTTTCGGGATTAGGCA
195 TACCTCTAAAATA-AGACAAACATGAATGGTCAT-ACTAATCCCCATTCTTTTCGGGATTAGGCA
* * * * * *
394113 CCATAAACATAGTCTTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTT
258 CCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTT
* * * * * *
394178 TTTCCGACCAATTATTATAAAGTCTATGCTCCTCCCTAAAATGAGCCAATCAAGGATTGTAGTAC
323 CTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTAT
* ** * * *
394243 TATTTGTCCTTAGTTTTGTGATTAGGAACTGCAAACACATTATCCTCGTTAGGATAAATGATATT
388 TGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATT
* *
394308 GAGGATTTTCTTTTCATGGAAATA
453 GATGATTTTCTTTTCATGGAAATC
* * * * *
394332 TTTTATTTGCACATATTTTCCTTAAAATCGAAGTTCATCACTTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * * * *
394397 CGTAACAATCTCTACTCTTTTCGAGATTAGAATCCAAAAACACATTCCCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * ** * * *
394462 ACGTTGACGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCCACTATTTTTCATGGAATCAACGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
394526 ACCTCTAAAATAAGACATACATGAATGGTCATACTCATCCCCATTCTTTTCGGGGTTAGGCTCCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * * *
394591 TAAACATAGTCAACTGATAAGGATGCATGATAATGAAGCTTTGATTTCTTAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * *
394656 CCGACCAGTTATTATAAAGTCAATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTAT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * * * * * *
394721 TAATCAATAGTTTTGTGATTGGGCACTACAAACACGTTATCCTTATTACGATAAATGATATTGGT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
*
394786 GATTTTCTTTTCGTGGAAATC
456 GATTTTCTTTTCATGGAAATC
* * *
394807 TTTTCTTTGCCCTTATTTTCCTAAAAATCAAAGTTCATCTCTTAAATAAGACAGGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * * * *
394872 CATAACAATCTCCATTCTTGTCAAGATTGGGACCCAAAAACACTTTTCCTTCTTTAGGATAGACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* *
394937 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCGTTCCACCGTTTTTGATAGAGTCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * ** * *
395002 ACATCCAAAATAAGACAAATATGAATAGAGATACCAATCCCTATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
395067 TAAACGTAGTCAACTCATAAGGATGCATGATAATGAAGGTTTGGTTTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * * *
395132 CCAACCAATTATTGTAAAGTCTATGCTCCTGCCTAAAATGAGCCAAACAGGGATTCTAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * *
395197 TCATCATTATTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGGTAAATGATACTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
* *
395262 GATTTT-TTTACAAGGAAATC
456 GATTTTCTTTTCATGGAAATC
* *
395282 TTTTCTTTGCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
*
395347 CGTAACAATCTCCGTTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
*
395412 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAGTCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * *
395477 ACCTCCAAAATAAGACAAATATGAATGGTCATACCAATCCCCATTCTTTTCGAGATTGGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * *
395542 TAAACGTAGTCTTCTAATAAGGATGCATGACAATGAAGCTTTGGATTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * *
395607 CCGACCAATTATTATAAAGTCTATGTTCCTGCTTAAAATGAGCCAAAAAAGGATTATAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * * * * *
395672 TCATCATTGGTTTTGTCATTAGGCACAATAAACAAAAATATCCTCATTAGGATAAATGATATTGA
391 TCATCATTAGTTTTGTGATTAGGAACTACAAAC-ACATTATCCTCATTAGGATAAATGATATTGA
* *
395737 TTATTTTCTTTTCGTGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* ** * * *
395759 TTTCCTTTTTCCTTATTTTCCTAAAAAATCAAAGTTCATCAGTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCT-TAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
395824 TCGTAACAATCTCCGTTCTTTTCAAGATTGGGACCCAAAAACACATTCCTTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* *
395889 GACATTGACGCTTTGGTGTCACAAGGAAAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * * *
395954 TACCTCTGAAACAGGAGAAACATGAATGGTCACAGTAATCCCCATTCTTTTTGGGATTAGGCACA
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * *
396019 ATAAACGTAGTCTTCGCATAAGGATGCCTGATAAGGAAGCTTTAGTTTCTCAAGAAAGGCTCTT-
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCT-TTC
* * *
396083 TTTCGACCAATTCTTATAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
*
396148 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTTATTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
* *
396213 A-CATTTTTCTTTTAATGGAAATC
454 ATGA-TTTTCTTTTCATGGAAATC
*
396236 TTTTCTTTGCCCTTATTTTCCTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * * * * *
396301 TGTAACAATCTCCATTATTTTCATGTTTGGCACCCATAAACAC-TTGCCCTTCATTAGGATAGAC
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATT-CCCTTCATTAGGATACAC
* *
396365 GACAATGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
396430 TACCTCCAAAATAAGACAAATATGAATGGTCATACCAATCCCCATTCTTTTCGAGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * *
396495 ATAAACGTAGTCTTCTCATAAGGATACATGACAATGAAGCTTTGGATTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
396560 TCCAACCAATTATTATAAAGTCTATGTTCCT-CCTTAAAATGAGCCAAACAAGGATTATAGTATT
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCC-TAAAATGAGCCAAACAAGGATTCTAGTATT
* * * * * *
396624 GTTCATCATTGGTTTTGTGATTAGGCACAATAAACAAAAATATCCTCATTAGGATAAATGATATT
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAAC-ACATTATCCTCATTAGGATAAATGATATT
*
396689 GATGATTTTCTTTTCGTGGAAATC
453 GATGATTTTCTTTTCATGGAAATC
** * * * ** *
396713 TTTTCTTTTTCCTTATTTTCCTAAAAAGTTAATGTTCATCAGATAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTTAAAA-TCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * *
396778 TCGTAACAATCTTCGTTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCACTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
*
396843 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * *
396908 TACCTCTGAAACAGGAGAAACATGAATGGTCACAGTAATCCCCATTCTTTTTGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * *
396973 ATAAACGTAGTCTTCGCATAAGGATGCCTGATAAGGAAGCTTTAGTTTCTCAAGAAAGGCTCTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
397038 TTCGACCAATTCTTATAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
397103 TTCATCATTAGTTTTGTGATTAGGAACTACAAAGACCTTATCCTTAATAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
397168 TGTTTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
*
397190 TTTTCTTTGCCCTTATTTTCCTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * *
397255 CGTAACAATCTCCATTATTTTCAAGTTTGGGACCCATAAACAC-TTGCCCTTCATTAGGATAGAC
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATT-CCCTTCATTAGGATACAC
*
397319 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
397384 TACCTCCAAAATAAGACAAATATGAATGGTCATACCAATCCCCATTCTTTTCGGGATTGGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * *
397449 ATAAACGTAGTCTTCTAATAAGGATGCATGACAATGAAGCTTTGGATTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
397514 TCCGACCAATTATTATAAAGTCTATGTTCCTGCTTAAAATGAGCCAAAAAAGGATTATAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * *
397579 TTCATCATTGGTTTTGTGATTAGGCACAATAAACAAAAATATCCTCATTAGGATAAATGATATTG
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAAC-ACATTATCCTCATTAGGATAAATGATATTG
*
397644 ATGATTTTCTTTTCGTGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
* ** * * * *
397667 TTTCCTTTTTCCTTATTTTCCTAAAAAATCAAAGTTCATCAGTTAAATGAGGCAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCT-TAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
397732 TCGTAACAATCTCCACTATTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * *
397797 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCTCCATTTTTGATAAAATCAAAATT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * *
397862 TACCTCTGAAACT-GGAGAAACATGAATGGTCATAATAATCCCCATTGTTTTTGGGATTAGGCAC
195 TACCTCT-AAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * *
397926 CATAAACGTAGTCTTCGCATAACGATGCATGATAAGGAAGCTTTAGTTTCTCAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
** *
397991 TTTTGACCAATTATTATAAAGTCTATGTTCATGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
**
398056 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTTGTTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
398121 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
* * * *
398144 TTTTCTTTACCCTTATTTTACTAAAAATCAAAGTTCATCACTTAAATAATACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * *
398209 CGTAACAATCTCCATTATTTTCAAGTTTGGGACCCATAAACAC-TTGCCCTTCATTAGGATAGAC
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATT-CCCTTCATTAGGATACAC
** *
398273 GACATTGACGCTTTGGTGTCGTAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * *
398338 TACCTCCAAAATATGACAAATATGAATGGTCATGCCAATCCCCAGTCTTTTCGGGATTAGGCGCC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * *
398403 ATAAACGTAGTCTTCTCATAAGGATGCATGACAATGAAGCTTTGGATTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
398468 TCCGACCAATTATTATAAAGTCTATGTTCCTGCTTAAAATGAGCCAAACAAGGATTATAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * * *
398533 TTCATCATTGGTTTTGTGATTAGGCACAATAAACCAAAATGTCCTCATTAGGATAAATGATATTG
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAA-CACATTATCCTCATTAGGATAAATGATATTG
*
398598 ATGATTTTCTTTTCGTGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** * * *
398621 TTTTCTTTTTCCTTATTTTCCTAAAAAATCAAAGTTCATCAGTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCT-TAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * *
398686 TCGTAGCAATCTCCACTATTTTCAACATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* *
398751 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCTCCGTTTTTGATA-AATCAAAATT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * *
398815 TACCTCTGAAACT-GGAGAAACATGAATGGTCATACTAATCCCCATTGTTTTTGGGATTGGGCAC
195 TACCTCT-AAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * *
398879 CATAAACGTAGTCTTCGCATAAGGATGCATGATAAGGAAGCTTTAGTTTCTCAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTT-
* *
398944 CTT-TGACCAATTATTATAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTAT
323 CTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTAT
*
399008 TGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATATT
388 TGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATT
399073 GATGATTTTCTTTTCATGGAAATC
453 GATGATTTTCTTTTCATGGAAATC
* *
399097 TTTTCTTTGCCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATTGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * * * * *
399162 TCCTAACAATCTCCATTCTTTTGAAGATTGAGACCCTAGAACACAATCCATTCATTAGGATGCAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* ** * *
399227 GTCATTGTTGCCTTGGTGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTAATAGAAAT-AAAGT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAG-AATCAAAGT
* * * *
399290 TTACGTCTAAAATATGACATACATGAATGGTCATCCTAATCCCCATTCTTTTCGGGATTAGGCAC
194 TTACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * *
399355 CAAAAACATAGTCAT-TCGATAAGGATGCAAGAAAATGAAGCTTTGGTTTCTCAA-AAGGGCTTT
259 CATAAACGTAGTCATCTC-ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTT
*
399418 CTTCCGACCAATTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACAAGGATTAC-AGTA
323 CTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATT-CTAGTA
* * * *
399482 TTGTTCATCATCAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATAT
387 TTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATAT
*
399547 TGATGATTTTCTTTTCCTGGAAATC
452 TGATGATTTTCTTTTCATGGAAATC
*** *
399572 TTTTCTTTTTACTT-CTTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
399636 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATAGAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * * *
399701 GACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTAATTCCACTGTTTTGGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * *
399766 TACCTCCAAAATAAGACAAATATGAATGGTCATACCAATCCCCATTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * *
399831 ATGAACGTAGTCATCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * * * * *
399896 TTCGACCAATTGTTATAAAGTCTAAGCTCCTGCCTAAAATAAACCAACCAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
399961 TTCGTCATCAGTTTTGTGATTAGGAACTACAAACACATTATCGTCGTTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
400026 TGATTTTCTTTTCATTGAAATC
455 TGATTTTCTTTTCATGGAAATC
* ** * * *
400048 TTTTTTTTGCATTTATTTTTCTTAAAATCAAAGTTCATCACGTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * *
400113 CGTAACAATCTCAATTCTTTTCAAGATTGGGACCTAAAAACACATTCCCTTCATTAGGATACATG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* *
400178 ACATTGACGCTTCGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
400243 ACCTCTGAAGTAAGAGAAACAGGAATGGTCATTCTAATCCCCATTCTTTTTGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * *
400308 TCAATGTAGTCATCTCATAAGGATGCAAGATAATGAAGCTTTGGTTTCTCAAAAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* ** ** *
400373 CCGACCAATTATTATATAGTCTATGTTTATGCCTAAAATGAAACAAACAAGGATTCTAGTGTTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* *
400438 TCACCATTAGTTTTGTGATTAGGAACTACAAACTCATTATCCTCATTAGGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
400503 GATTTTCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
* * *
400524 TTTTCTTCGCCCTTATTTACCTTAAAATCAACGTTCATCACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* ** * *
400589 CGCAACAATCTCTTTTCTTTTCAAGA-TGGGACCCAAAAACACATTCCCTTTACTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * *
400653 TCATTGATGCCTTGGGGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * *
400717 ACCTCTGAAATAAGACAAACATGAATGGTCATACTCATCCCCATTCTTTTCGAGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
*
400782 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTTTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
*
400847 CCGACCAATTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACAAGGATTAC-AGTATTG
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATT-CTAGTATTG
* * * *
400911 TTCATCATCAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
400976 TGATTTTCTTTTCCTGGAAATC
455 TGATTTTCTTTTCATGGAAATC
*** *
400998 TTTTCTTTTTACTT-CTTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * *
401062 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATAGAT
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * *
401127 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTAATTCCACTGTTTTGGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
401192 TACCTCAAAAATAAGACAAATATGAATGGTCATACCAATCCCCATTCTTTTCGGGATTAGGTACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * *
401257 ATGAACGTAGTCATCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * * * *
401322 TCCGACCAATTGTTATAAAGTCTAAGCTCCTGCCTAAAATAAACCAACCAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
401387 TTCGTCATCAGTTTTGTGATTAGGAACTACAAACACATTATCGTCGTTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
401452 TGATTTTCTTTTCATTGAAATC
455 TGATTTTCTTTTCATGGAAATC
* ** * * *
401474 TTTTTTTTGCATTTATTTTTCTTAAAATCAAAGTTCATCACGTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * *
401539 CGTAACAATCTCAATTCTTTTCAAGATTGGGACCTAAAAACACATTCCCTTCATTAGGATACATG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* *
401604 ACATTGACGCTTCGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * *
401669 ACCTCTGAAGTAAGACAAACAGGAATGGTCATTCTAATCCCCATTCTTTTTGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * *
401734 TCAATGTAGTCATCTCATAAGGATGCAAGATAATGAAGCTTTGGTTTCTCAAAAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* ** ** *
401799 CCGACCAATTATTATATAGTCTATGTTTGTGCCTAAAATGAAACAAACAAGGATTCTAGTGTTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* *
401864 TCACCATTAGTTTTGTGATTAGGAACTACAAACTCATTATCCTCATTAGGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
401929 GATTTTCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
* * *
401950 TTTTCTTCGCCCTTATTTACCTTAAAATCAACGTTCATCACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* ** *
402015 CGCAACAATCTCTTTTCTTTTCAAGA-TGGGACCCAAAAACACATTCCCTTTATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * *
402079 TCATTGATGCCTTGGTGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
402143 AACTCTGAAATAAGACAAACATGAATGGTCATACTCATCCCCATTCTTTTCGAGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
*
402208 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTTTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * *
402273 CCGACCAATTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACATGGATTATAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * * * *
402338 TCATCATTAGTTTCGTGATTAGGCACTATAAACAAATTAT-CTCCTTAGGATAAATGATATTCAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
* *
402402 GATTTTCTGTTCACTGGAAATT
456 GATTTTCTTTTCA-TGGAAATC
** *
402424 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * *
402489 TCGTATCAACCTCCACTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCGTTAGGATATAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** *** * **
402554 TGACATTGACGCTTCAGTGTTGGAAGAAAAGCTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGT
130 -GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGT
* * * *
402619 TTGCATCTTAAATAAGACAAACGTGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
194 TTACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * * * *
402684 CATAAACGTAGTCTTCGCACAAGGATGCCTGAGAATGAAGCTTTAGTTTCTTAAAAAAAGGCTTT
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTC-TCAAGAAAGGCTTT
* * *
402749 TTTCCCACCAATTATTATAAAGTCTATGCT-CTAGCCTAAAATGAGCCAAACAAGGATTCTAGTA
323 CTTCCGACCAATTATTATAAAGTCTATGTTCCT-GCCTAAAATGAGCCAAACAAGGATTCTAGTA
* * *
402813 TTGTTCGTCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTATGATAAATGATAT
387 TTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATAT
402878 TGATGATTTTCTTTTCATGGAAATC
452 TGATGATTTTCTTTTCATGGAAATC
* * * *
402903 TTTTCTTTGCACTTATTTTTCTTAAAATCAAAGTTCATCAATTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
402968 CGTAACAATCTCGATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCGTTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * ** * * *
403033 ACAATGGCGC-TTGGTGTCACAAG-AAATCTTTTTTTTCCACCTTTTTTCATAGAATCAACGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* *
403096 ACCTCTAAAATAAGACATACATGAATGGTCATACTAATGCCCATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * *
403161 TAAACATAGTCATC-CGATAAAGATGCAAGATAATGAAGTTTTGGTTTCTCAAGAAAGGCTTTCT
261 TAAACGTAGTCATCTC-ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
403225 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAATATGAGCAAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * * ** *
403290 TTAATCATTAGTTTTGTGATTGGGCACTATAAACACGTTATCCTTATTATCATACATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
403355 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** * * *
403377 TTTTCTTTGCCCTTATTTTTATTAAAATCAAAGTTCATCACTTAATTAAGAGAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * *
403442 TGTAACAATCTACATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATACAAG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * *
403507 TCATTAATGCCTTGGTGTCACAAGAAAA-CATTTCATTCCACTGTTTTTTAT-GTAATCAAAGTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAG-AATCAAAGTT
* * *
403570 CACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGTCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
403635 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * *
403700 TCCGACCAATTATTGTAAAGTCTACGTTCCTGCCTAAAATGAGCCAAACAAGGATTATAATATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
403765 TTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTCA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
403830 CGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** *
403852 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * *
403917 TCATAACAATCTCCATTCTTTTCAAGATTGGGACTCAAAAACACTTTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** ** * * *
403982 GACATTGACGCTTTGGTGTCGGAAGAAAAGCTTTTGTTTCTACCATTTTTCATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * *
404047 TGCATCTTAAATAAGACAAACGTGAATGGTCATACTAATCCCCATTCATTTCGGGATTAGGCTCC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * *
404112 AAAAAAGTAGTCTTCGCATAAGGACGCATGATAATGAAGCTTTGGTTTCTTAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * * * *
404177 TCTGACCAGTTAGTATAAAGTCTATGTTCCGGCCTAAAATGAACCTAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * * *
404242 TTAATCATTGGTTTTGTGATTAGGTACTATAAACACATTATCCTTAATATGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
404307 TGATGTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** *
404329 TTTTCTTCACCCTTATTTTTCC-TAAAATCAAAGTTCATCACTTAAATAAGACAAGCTTCGATTC
1 TTTTCTTTGCCCTTA-TTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
*
404393 TCGTAACAATCTCCATTCTTTTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATA
65 TCGTAACAATCTCCATTC---TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATA
* * * * * *
404458 CAC-ATCATT-ATTGCCTTGGTGTCACAAGAAAA-CTTTTAATTCCACCATTTTTTATATAATCA
127 CACGA-CATTGA-CGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCA
* *
404520 AAGTTTACCTCTAAAATAAGACAAACATGAATGGTCATAGTAATCCCCATTCTTTTCAGGATTAG
190 AAGTTTACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAG
* * * **
404585 GCACCATAAACCTAGTCATCTTATAAGGATGCATGATAATAAAGCTTTGGTTTCTCAAGAAAGAT
255 GCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGC
* ** * *
404650 TTTCTTCCGACCAATTATTAAAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGCTTTATAA
320 TTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAG
* * *
404715 TATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAGATTATCCTCATTAGGATAAATGAT
385 TATTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGAT
* *
404780 ATTCATGGTTTTCTTTTCATGGAAATC
450 ATTGATGATTTTCTTTTCATGGAAATC
** * *
404807 TTTTCTTTTTCCTTATATTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
404872 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCATAAACACTTTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** * * * *
404937 GACATTGACGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAGTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
405002 TGCGTCTCAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCTCC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * * *
405067 AAAAACGTAGTCTTCGCATAAAGATGCCTGATAATGAAGCTTT-GTTTCTTAAGAAAGGCTTTTT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
405131 TCTGACCAATTATTATAAAGTCTATGCTCCGGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
405196 TTCGTCCTTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAAAGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
405261 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* * * * *
405283 ATTTCTTAGCACTTATTTTCCTTAAAAATTAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * * *
405348 TCGTAACAATCTACATTCTTTTTAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAAT
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* ** * *
405413 GACATTGACGCTTTGGTGTCAGAAGAAAAGCTTTTTTTTCTACCGTTTTTGATAGACTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * *
405478 TGCATCTTAAATAAGACAAGCGTGAATGGTCATACTAAT-CCCATTTCTTTTCGGGATTAGGCAC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCA-TTCTTTTCGGGATTAGGCAC
* * * * * * *
405542 CATAAACGTAGTCTTCACATAAGGATGCCTAATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTT
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * *
405607 TTCTGACCAATTGTTATAAAGTCCATGCTCCTTCCTAAAATGAGCCAAACAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * * * * * *
405672 GTTCGTCACTAGTTTTGTGATTAAGAACTACAAACACATTGTCCTCGTTACGATAGATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
*
405737 ATGATTTTCTTTTCATAGAAATC
454 ATGATTTTCTTTTCATGGAAATC
* * * * *
405760 TTTTCTTTGCACTTATATTCCTTAAAATCGAAGTTCATCACTTAAATAAGAGAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
405825 CGTAACAATCTCTATTCTTTACAA-ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * *
405889 ACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATAAGAATCAACGTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGAT-AGAATCAAAGTT
* *
405953 TACCTCTAAAATAAGACATACATGAATGGTCATACTAATCCCCCTTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * *
406018 ATAAACATAGTCATCTGATAAGGATGCATGATAATGAAGCTTTAGTTTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
406083 TCCGACCAGTTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * * * *
406148 TTAATTATTGGTTTTGTGATTGGGCACTATAAACACATTATCCTTATTATGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
406213 TGGTTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* * * *
406235 TTTTGTTTGCCCTTACTTTGCTTAAAATCAAAGTTCATCACTTAAATAAGATAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
*
406300 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCCAAAAACACATTCCCTTCAATAGGATACAC
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGA-CCCAAAAACACATTCCCTTCATTAGGATACAC
* * * * * * *
406365 GTCATTAATGCCTTGGTGTCACAAGAAAA-CTTTTAATTCCACCGTTTTTTATATAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * *
406429 TACCTTTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTGTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * **
406494 ATAAACATAGTCATCTCATAAGGATGCATGATAATAAAGCTTTGGTTTCTCAAGAAAGATTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* ** * *
406559 TCCGACCAATTATTAAAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGCTTTATAATATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * *
406624 TTCGTCATTAGTTTTGTGATTAGGCACTATAAACAGATTATCCTCATTAGGATAAATGATATTCA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
406689 TGGTTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** *
406711 TTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
406776 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCATAAACACTTTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** * * *
406841 GACATTGACGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * *
406906 TGCGTCTCAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCTCC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * * * * * * *
406971 AAAAACGTAGTCTTCGCATAAAGATGCCTGATAATGAAGCTTT-GTCTCTTAAGAAAGGCTTTTT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * *
407035 TCTGACCAATTATTATAAAGTCTATGCTCCGGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
407100 TTCGTCCTTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCGTTAGGATAAAAGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
407165 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* * * * *
407187 ATTTCTTAGCACTTATTTTCCTTAAAAATTAAAGTTCATCACTTAAATGAGACAAGCATCGATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* * * * * *
407252 TCGCAACAATCTACATTCTTTTCCAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATAAAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
** ** * * *
407317 GACATTGACGCTTTGGTGTCGGAAGAAAAGCTTTTTTTTCTACCATTTTTGATAGACTCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * *
407382 TGCATCTTAAATAAGACAAGCGTGAATGGTCATACTAAT-CCCATTTCTTTTCGGGATTAGGCAC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCA-TTCTTTTCGGGATTAGGCAC
* * * * * * *
407446 CATAAACGTAGTCTTCACATAAGGATGCCTAATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTT
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * * *
407511 TTCTGACCAATTGTTATAAAGTCCATGCTCCTTCCCAAAATGAGCCAAACAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * * * * * *
407576 GTTCGTCACTAGTTTTGTGATTAAGAACTACAAACACATTGTCCTCGTTACGATAGATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
407641 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
* * * * * *
407664 TTTTCTTTGCACTTATATTCCTTAAAATCGAAGTTCATCACTTAAATAAGAGAAGTATCAATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
407729 CGTAACAATCTCTATCCTTTTCAA-ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * *
407793 ACATTGACGCTTTAGTGTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATAAGAATCAACGTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGAT-AGAATCAAAGTT
* *
407857 TACCTCTAAAATAAGACATACATGAATGGTCATACTAATCCCCCTTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
* * *
407922 ATAAACATAGTCATCTGATAAGGATGCATGATAATGAAGCTTTAGTTTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* *
407987 TCCGACCAGTTATTATAAAGTCTATGTTCCTACCTAAAATGAGCCAAACAAGGATTCTAGTATTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * * * *
408052 TTAATCATTGGTTTTGTGATTAGGCACTATAAACACATTATCCTTATTACGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
408117 CGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
* *
408139 TTTTCTTTGCCCTTACTTTGCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * * *
408204 CATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTGAATAGGATACACT
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * *
408269 TCATTAATGCCTTGGTGTCACAAGAAAA-CTTTTAATTCCACCGTTTTTTATATAATCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * *
408333 ACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTGTTTTCGGGATTAGTCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * *
408398 TAAACGTAGTCATCTCATAAGGCTGCATGATAATAAAGCTTTGGTTTCTCAAGAAAGGTTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * * *
408463 CTGACCAATTATTAAAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTATAGTGTTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * *
408528 TCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
*
408593 GATTTCCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
* * *
408614 TTTTCCTTT-TCCTTATTTTCCATAAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATT
1 TTTT-CTTTGCCCTTATTTTCC-TTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATT
* * *
408678 CTCGTAACAATCTCTATTCTATTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATACA
64 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACA
* * * * * * * *
408743 CGTCGTTAATGCCTTGGTGTCACAAGAAAA-CTTTCCATTCCACCGTTTTTTATATAATCAAAGT
129 CGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGT
*
408807 TTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
194 TTACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
408872 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * *
408937 TTCCGACCAATTATTAAAAAGTCTATGTTACTGCATAAAATGAGCCAAACAAGGATTATAGTGTT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * * *
409002 GTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTTTCCTCATTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
409067 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** * *
409090 TTTTCTGCGCCCTTATTTTCCTTAAAACCAAAGTTCATTACTTAAATAAGACAAGCATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * **
409155 CGTAACAATCTCCATT-TTTATCAAAATTGGGACCCAAAAATACATTCCCTTGTTTAGGATACAC
66 CGTAACAATCTCCATTCTTT-TCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * **
409219 GACATTGACGCTTTGGTGTCAGAAGAAAAGCTTTTCTTTTTACCGTTTTTGATAGAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * * * * *
409284 TGCTTCTTAAATAAGACAAATATGAGTGGCCACACTAATCCCCTTTTCTTTTCGAGATTAGGCAC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCC-ATTCTTTTCGGGATTAGGCAC
* ** * * * * *
409349 CATAAACGTAGTCTTCGGATAAGGTTGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTT
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* *
409414 TTCCGACCAATTATTATAAAGTCTATGCTCCTACCTAAAATGAGCCAAACAAGGATTCTAGTATT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * * * *
409479 GTTCGTCATTAGTTTTGTGTTTAGGAACTGCAAACACATTATCCTCGTTAGGATAAATGATGTTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
409544 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
* *
409567 TTTTCTTTGCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * *
409632 CGTAACAATCTCCATTCTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACA
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * *
409697 ACATTGATGCTTTGGTGGCACAAGAAAA-CTTTTCATTCCACCATTTTTCATGGAAACAACGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * *
409761 ACCTCTAAAATAAGACATACAAGGATGGTCATACTAATCCCCATTCTTTTTGGGGTTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * *
409826 CAAACATAGTCATCTGATAAGAATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * *
409891 CTGACCAATTATTATAAAGTCTATGTTCCTGCATAAAATGAGCCAAACAAGGATTATAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* ** * * * * * *
409956 TCATGATTAGTTTTGTGATTAGGCGCTATAAAAAAATTATCCTTAATATGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
410021 GATTTTCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
* * * * *
410042 TTTTCTTTGCACTTATTTTTCTTAAAATCAAATTTCATCACTTAAACAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
410107 CGTAACAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTACCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* *** *
410172 ACATTGACGCTTTGGTATCGA-AAGAAAAGCTTTT--TTCTGTCGTTTTTTATAGAATCAAAGTT
131 ACATTGACGCTTTGGTGTC-ACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
* * * * * *
410234 TGCATCTTAAATAAGACAAGCGTGAATGGTCATACTAAT-TCCATTTCTTTTCGGGATTAGGCAC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCA-TTCTTTTCGGGATTAGGCAC
* * * * * * *
410298 CATAAATGTAGTCTTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTT
259 CATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * *
410363 TTCTGACCAATTATTATAAAGTCTATGCTCCTACCTAAAATGAGCCAAACAAGGATTCTAGTGTT
324 TTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATT
* * *
410428 GTTCATCTTTAGTTTTGTGTTTAGGAACTACAAACACATTATCCTCGTTAGGATAAATGATATTG
389 GTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTG
410493 ATGATTTTCTTTTCATGGAAATC
454 ATGATTTTCTTTTCATGGAAATC
** * * * *
410516 TTTTCTTTGTACTTATATTCCTTAAAATCAAAGTTCATCACTTAAATAAAAGAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * *
410581 CGTAACAATCTCTATTATTTTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * * * *
410646 TCGTTAATGCCTTGGTGTCAC-----AA-CTTTTCATTCCACTGTTTTTTATATAATTAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * *
410705 ACCTATGAAATAAGACAAATAGGAATGGTCATACGAATCCCCATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * * * * *
410770 TAAACGTAGTCATCTGATTAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTGTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
** * * * *
410835 ATGACCAATTGTTATAAAGTCTATGCTT-TTGCCTAAAAGGAGCCAAACAGGGATTCTAGTATTG
326 CCGACCAATTATTATAAAGTCTATG-TTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
410899 TTCGTCACTAGTTTTGTGATTAGGAACTGCAAACACATTATCCTCGTTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
410964 TGATTTTCTTTTCATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** * * *
410986 TTTTCTTTGTACTTATATTCCTTAAAATCAAAGTTCATCACTTAAATAAGAGAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* *
411051 CGTAACAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* ** * * *
411116 ACATTGGCGCTTTGGTGTCGGAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAGTCAAAGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* * * *
411180 GCATCTTAAATAAGACATACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
411245 TAAACATAGTCATCTGATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
*
411310 CCGACCAGTTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * ** *
411375 TC-TCACTAGTTTTGTGATTAGGAAATACAAACACATTATCCTTGTTACGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
411439 GATTTTCTTTTCATGGAAATC
456 GATTTTCTTTTCATGGAAATC
** * * *
411460 TTTTCTTTGTACTTATATTCCTTAAAATCAAAGTTCATCACTTAAATAAGAGAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
*
411525 CGTAACAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * *
411590 ACATCGACGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATAGAATCAACGCTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
*
411654 ACCTCTAAAATAAGACATACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* *
411719 TAAACATAGTCATCTGATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* *
411784 CCGACCAGTTATTATAAAGTCTATGTTCTTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* * * * * * *
411849 TAATCATTGGTTTTGTGATTGGGCACTATAAACACATTATCCTTATTATGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
* * *
411914 GATTTTTTTTTCGT-GAAAAC
456 GATTTTCTTTTCATGGAAATC
*
411934 ATTTTCTTTGCCCTTATTTTCCTTAAAGTCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
1 -TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
411999 TCGTAACAATCTCCATTCTTTTCAAGATTTGGACCCAAAAACACATTCCCTTCAATAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* * * * * * *
412064 GTCATTAATGCCTTGGTGTCACAAGAAAA-CTTTTAATTCCACCGTTTTTTATATAATCAAAGTT
130 GACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTT
*
412128 TACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
195 TACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACC
*
412193 ATAAACGTAGTCATCTCATAAGGATGTATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
260 ATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCT
* * * * *
412258 TCCGACCAATTATTAAAAAGTCTATGTTCCTACATAAAATGAGCCAAACAAGGATTATAGTGTTG
325 TCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTG
* * * *
412323 TTCATCATTAGTTTTGTGATTATGCACTATAAACAAATTATCCTCATTAGGATAAATGATATTGA
390 TTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGA
*
412388 TGATTTTCTTTTAATGGAAATC
455 TGATTTTCTTTTCATGGAAATC
** * * ** * * *
412410 TTTTCTTTTTCCTTATTTTCCTTAAAAATCGAAGTTTATCACTTGCATGAGACAAGCGTCAATTC
1 TTTTCTTTGCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTC
* *
412475 TCGTAACAATCTCCATTCTTTTCAATATTGGGACCCAAAAACGCATTCCCTTCATTAGGATACAC
65 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC
* *
412540 GACATTGACGCTTTGGTGTCGA-AAGAAAAGCGTTTT--TCTCCCCCATTTTTGATAGAATCAAA
130 GACATTGACGCTTTGGTGTC-ACAAGAAAAGC-TTTTCAT-TCCACCGTTTTTGATAGAATCAAA
* * *
412602 GTTTGCACCT-T-AAATACGACAAACGTGAATGGTCATACTAATCACCATTCTTTTCGGGATTAG
192 GTTT--ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAG
* * * * * *
412665 GCACCATAACCGTAGT-ATTCGCATAAGGTTGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGG
255 GCACCATAAACGTAGTCA-TCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGG
* * * * *
412729 CTTTTTTCCGACCAATTATTATAAAGTCTACGCTCCTACCTAAAATGAGCTAAACAAGGATTCTA
319 CTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTA
** * * * *
412794 GTATTGTTTGTCATTAGTTTTTTGTTTAGGAACTGCAAACACATTATCCTCGTTAGGATAAATGA
384 GTATTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGA
*
412859 TATGGATGATTTTCTTTTCATGGAAATC
449 TATTGATGATTTTCTTTTCATGGAAATC
* *
412887 TTTTCTTTGCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTCT
1 TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
* * *
412952 CGTAACAATCTCCATTCTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACA
66 CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
* * * * * * *
413017 ACATTGATGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATGGAAACAACGTTT
131 ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
* *
413081 ACCTCTAAAATAAGACATACATGAATGGTCATACTAATCCCCATTCTTTTCGGGGTTAGGCACCA
196 ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
* * *
413146 CAAACATAGTCATCTGATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
261 TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
* * *
413211 CTGACCAATTATTATAAAGTCTATGTTCCTGCATAAAATGAGCCAAACAAGGATTATAGTATTGT
326 CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
* ** * *
413276 TCATGATTAGTTTTGTGATTAGGCGCTATAAACAAATTATCCTCATTAGGATAAATGATATTGAT
391 TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
413341 GATTTTCTTTT
456 GATTTTCTTTT
413352 TTCTTAAACT
Statistics
Matches: 21026, Mismatches: 2578, Indels: 336
0.88 0.11 0.01
Matches are distributed among these distances:
468 5 0.00
469 2 0.00
470 465 0.02
471 758 0.04
472 34 0.00
473 74 0.00
474 2057 0.10
475 5011 0.24
476 6904 0.33
477 3658 0.17
478 1752 0.08
479 273 0.01
480 33 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCT
CGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACG
ACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTT
ACCTCTAAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCA
TAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT
CCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGT
TCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGAT
GATTTTCTTTTCATGGAAATC
Found at i:414251 original size:13 final size:13
Alignment explanation
Indices: 414233--414258 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
414223 AATTTTTTTG
414233 TGTATCGATACAT
1 TGTATCGATACAT
414246 TGTATCGATACAT
1 TGTATCGATACAT
414259 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:416783 original size:13 final size:13
Alignment explanation
Indices: 416765--416803 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
416755 ATAATCACCC
*
416765 TGTATCGATACAG
1 TGTATCGATACAA
416778 TGTATCGATACAA
1 TGTATCGATACAA
416791 TGTATCGATACAA
1 TGTATCGATACAA
416804 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:416814 original size:20 final size:20
Alignment explanation
Indices: 416789--416867 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
416779 GTATCGATAC
416789 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
416809 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
416834 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
416854 CATGTATCGATACA
1 AATGTATCGATACA
416868 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:420740 original size:21 final size:21
Alignment explanation
Indices: 420711--420755 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
420701 AAGTTTTCAT
*
420711 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
420731 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
420753 TTT
1 TTT
420756 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:422992 original size:13 final size:13
Alignment explanation
Indices: 422974--422999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
422964 AATTTTTTTG
422974 TGTATCGATACAT
1 TGTATCGATACAT
422987 TGTATCGATACAT
1 TGTATCGATACAT
423000 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:424350 original size:476 final size:475
Alignment explanation
Indices: 423382--426086 Score: 3431
Period size: 476 Copynumber: 5.7 Consensus size: 475
423372 GATCCTAACA
* * * * *
423382 CATACTAATCCCCATTCTTTTCGGGATTAGGCAACGTAAACATAGTCATCTGATAAGGACGCATG
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* * *
423447 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCCTCCGACCAGTTATTATAAAGTTTATGTTCT
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * *
423512 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTAATCATT-GATGTTGTGATTGGGCACTA
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAG-TTTTGTGATTAGGCACTA
* * * *
423576 TAAACACATTATCCTTAATATGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTT
195 TAAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTT
* *
423641 TGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTAAAATAAGACAAGCATCGATTCTCGTAACA
260 TTCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * *
423706 ATCTCCATTCTTTTCAAGATTGGGACCCAAAAGCACATTCCCTTCAATAGGATACACGTCATTAA
325 ATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
* * ** * * * * *
423771 TGCCTTGGTGTCACAAGAAAAACTTTTAATTCTAT-CGTTTTTTATATAATCAAAGTTTACCTAT
390 CGCTTTGGTGTCACAAG-AAAACTTTTCTTTCT-TCCGTTTTTGATAGAATCAAAGTTTGCATCT
*
423835 GAAATAAGACAAACATGAATGGT
453 TAAATAAGACAAACATGAATGGT
*
423858 CATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* * * ** * *
423923 ATAATAAAGCTTTGGTTTATCAAGAAAGGTTTTCTTTTGACCAATTATTGTAAAGTCTATGTTCC
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * *
423988 TGCCTAAAATGAGCCAAAGAAGGATTATAGTATTGTTCATCATTAGTTTTTTGATTAGGCACTAT
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
*
424053 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTT
196 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
* * * * *
424118 TTCCTTATTTTCCTTAAAAATCAAAGTTCATCCCTTAAATCAGACAAGCATCGATTCTCATAGCA
261 TCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * * *
424183 TTCTCTATTCATTTCCAGATTGGGACGCAAAAACACATTCCTTTCGTTTGGATACACGACATTGA
325 ATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
* ***
424248 CGTTTTGGTGTTGGAAGAAAAGCTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGTTTGCATCTT
390 CGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGTTTGCATCTT
** *
424313 AAATAAGACAAACGGGATTGGT
454 AAATAAGACAAACATGAATGGT
* * *
424335 CATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCGCATAAGGATGCCTG
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* * * * * *
424399 ACAAGGAAGCTTTAGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTCTTATAAAGTCTATGTTCG
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * *
424464 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGGTTAGGAACTAC
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
** ** * *
424529 AAACGCATTATCCTTTTTAGCATAAATGATATTGATAATTTTCTTTTCATGGAAATCTTTTCTTT
196 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
* * * *
424594 GCACTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGAGAA-CTATCGATTCTCATAACA
261 TCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGC-ATCGATTCTCGTAACA
* * *
424658 ATCTCTATTCTTTTCAAGATTTGGAACCAAAAACACATTCCCTTCATTACGATACACGACATTGA
325 ATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
* ** * * * * * *
424723 CGCTTTGGTGACACAAGAAAACTTTTCTTTCCACCATTTTTCATAGAATCAACGTTTACCTCTAA
390 CGCTTTGGTGTCACAAGAAAACTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGTTTGCATCTTA
* *
424788 AATAAGACATACATGAATGGC
455 AATAAGACAAACATGAATGGT
* * * *
424809 CATACTAATCCCCATTCTTTTTGGGATTAGGCAACATAAACATAGTCATCTGATAAGGATGCATG
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* * *
424874 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAGTTATTATAAACTTTATGTTCT
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * * *
424939 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTAATCATTGGTGTTGTGATTGGGCACTAT
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
* * *
425004 AAACAAATTATCCTTAATATGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
196 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
* * * * *
425069 GCCCTTATTTTCCTTAAAATCAAAGTTCATCACTAAAATAAGAAAAGGATTGATTCTCGTAACAA
261 TCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAA
* * * * * *
425134 TATCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCAATAGGATACACGTCATTAAT
326 TCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGAC
* * *
425199 GCCTTGGTGTCACAAGCAAAA-------------C---TTT--T--AAT-----TCT--ATCTAA
391 GCTTTGGTGTCACAAG-AAAACTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGTTTGCATCTTA
*
425237 AATAAGACATACATGAATGGT
455 AATAAGACAAACATGAATGGT
*
425258 CATACTAATCCCCATTCTTTTCGGGGTTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* * * *
425323 ATAATAAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTCCGACCAATTATTGTAAAGTCTATGTTCC
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * *
425388 TGCCTAAAATGAGCCAAACAGGGATTATAGTATTGTTCATCATTTGTTTTGTGATTAGGCACTAT
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
* *
425453 AACCAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTT
196 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
* * * * *
425518 TTCCTTATTTTCCTTAAAAATCAAAATTCATCCCTTAAATGAGACAAGCATCGATTCTCGTAGCA
261 TCCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * ** * **
425583 TTCTCTATTCATTTCCAGATTGGGACGCAAAAACATATTCATTTCGTTTTGATACACGACATTGA
325 ATCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA
*** * *
425648 CGCTTTGGTGTTGGAAGAAAAGATTTTCTATCTTCCGTTTTTTGATAGAATCAAAGTTTGCATCT
390 CGCTTTGGTGTCACAAGAAAA-CTTTTCTTTCTTCCG-TTTTTGATAGAATCAAAGTTTGCATCT
*
425713 TTAATAAGACAAACATGAATGGT
453 TAAATAAGACAAACATGAATGGT
* * * * *
425736 CATACTAATCCCGATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCGCATAAGGATGCCTA
1 CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
* ** * *
425801 ATAATGAAGCTTTAGTTTCTTTAGAAAGGCTTTATTCCGACCAATTATTATAAAGTCTATGCTCT
66 ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
* * * *
425866 TGCCAAAAATGAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAACTAC
131 TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
* * *
425931 AAACACATTATCGTCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
196 AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
* * * * * * *
425996 GCACTTATTTTTCTTCAAATCAAA-TTCCATCACTTAAACAAGATAAGTATCGATTCTCGTAACA
261 TCCCTTATTTTCCTTAAAATCAAAGTT-CATCACTTAAATAAGACAAGCATCGATTCTCGTAACA
*
426060 ATCTCTATTCTTTTCAATATTGGGACC
325 ATCTCTATTCTTTTCAAGATTGGGACC
426087 TTTGGTGTCG
Statistics
Matches: 1915, Mismatches: 275, Indels: 77
0.84 0.12 0.03
Matches are distributed among these distances:
449 279 0.15
450 103 0.05
451 2 0.00
456 3 0.00
458 1 0.00
460 3 0.00
463 2 0.00
467 3 0.00
469 1 0.00
471 3 0.00
474 62 0.03
475 462 0.24
476 492 0.26
477 231 0.12
478 268 0.14
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (475 bp):
CATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATG
ATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCT
TGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTAT
AAACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTT
TCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAA
TCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGAC
GCTTTGGTGTCACAAGAAAACTTTTCTTTCTTCCGTTTTTGATAGAATCAAAGTTTGCATCTTAA
ATAAGACAAACATGAATGGT
Found at i:426775 original size:32 final size:30
Alignment explanation
Indices: 426739--426797 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
426729 GAAATCAAAT
426739 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
426771 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
426798 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:427120 original size:32 final size:34
Alignment explanation
Indices: 427057--427121 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
427047 TACAAGCCAA
*
427057 TGTATCGATACATATTTTTTGTATATCGATACAT
1 TGTATCGATACATATTTTGTGTATATCGATACAT
427091 TGTATCGATACATATTTTGTGTAT-T-GATACA
1 TGTATCGATACATATTTTGTGTATATCGATACA
427122 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 6 0.20
33 1 0.03
34 23 0.77
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (34 bp):
TGTATCGATACATATTTTGTGTATATCGATACAT
Found at i:431705 original size:15 final size:15
Alignment explanation
Indices: 431685--431715 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
431675 ATTTCGTTTG
*
431685 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
431700 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
431715 G
1 G
431716 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:433491 original size:21 final size:21
Alignment explanation
Indices: 433462--433506 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
433452 AAATTTTTAT
*
433462 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
433482 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
433504 TTT
1 TTT
433507 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:435035 original size:32 final size:30
Alignment explanation
Indices: 434999--435057 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
434989 GAAATCAAAT
434999 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
435031 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
435058 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:435356 original size:13 final size:13
Alignment explanation
Indices: 435338--435363 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
435328 ATATTTTTTG
435338 TGTATCGATACAT
1 TGTATCGATACAT
435351 TGTATCGATACAT
1 TGTATCGATACAT
435364 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:435374 original size:32 final size:33
Alignment explanation
Indices: 435317--435381 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
435307 TACAAGCTAA
435317 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
435351 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
435382 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:435375 original size:19 final size:19
Alignment explanation
Indices: 435317--435381 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
435307 TACAAGCTAA
435317 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
435338 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
435351 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
435370 TGTATCGATACA
1 TGTATCGATACA
435382 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:438107 original size:476 final size:477
Alignment explanation
Indices: 435757--447021 Score: 15848
Period size: 476 Copynumber: 23.6 Consensus size: 477
435747 GATCCTAACA
* * * *
435757 GAGCCAAACAAGGATTCTAGTACTGTTCGTCATTAGTTTTGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* *
435822 TCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* * * * * *
435886 TTCCTT-AAAGTCAACGTTCATCACTTAAATAAGAGAAGTATCGATTCTCATAACAATCTCTATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
*
435950 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGGTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * *
436015 GTCACAAGAAAA-CTTTTCCTTCCACCATTTTTCATAGAATCAACA-TTTACCTCTAAAATAAGA
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAA-AGTTTACCTCTGAAATAAGA
* *
436078 CATACATGAATGGCCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCATCT
324 CAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCAT----A-A---A-C-
*
436143 GATTAGGCTCCATAAAAGTAGTCTTCGCATAAGGACGCATGATAATGAAGCTTTGGTTTCTCAAG
379 G--TA-G-T-C--------A-TC-T--CATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAG
* *
436208 AAAGGCTTTCTTCCGACCAGTTATTATAAAGTCTATGTTCCTGCCTAAAAA
427 AAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* * * * * * *
436259 GCGCCAAACAAGGATTCTAGTATTGTTAATCATTGGTTTTGTGATTGGGCACCATAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * **
436324 TCCTTATTATGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
*
436389 TGCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * *
436453 TTTTCAAGATTAGGACCCAAAAACACATTCCCTTCAATAGGATACACGTCATTAATGCCTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * *
436518 TCACAAGAAAA-CTTTTAATTCCACCGTTTTTTATATAATCAAAGTTTACCTCTTAAAATAAGAC
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTC-TGAAATAAGAC
* * *
436582 AAGCAAGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCATCATAAACGTAGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * * *
436647 ATAAGGACGCATGATAATAAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTCCGACCAATTATTAAA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
436712 AAGTCTATGTTCCTGCCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* *
436735 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
*
436800 TCCTCATTAGGATAAATGATATTGATGATTTCCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
436865 TCCATAAAATTCAAAGTTCATCACTTAAATCAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
436930 TTTTCAAGATTGGGACCAAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * * *
436995 TCACAAGAAAAGCTTTTCATTCCACCGCTTTTGATAAAATCAAAATTTACCTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * * * *
437060 AACATGAATGGTCATACTAATCCACATTCTTTTTGGGATTAGGGACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
* *
437125 TAAGGATGCATGATAAT-AAGGCTTTGGTTTCTAAAAAAAGGCTTTCTTCCGACCAATTATTATA
391 TAAGGATGCATGATAATGAA-GCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* * * *
437189 TAGTCAATGTTCGTGCCGAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * * * *
437212 AAGCCTAACAAGGATTCTAGTATTGTTCATCATTAGTTATGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * * * **
437277 TCCTCTTTAGGATAAATGATATTGATCATTTTCGTTTCTTGGAAATCTTTTCTTTGGCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * * *
437342 TCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTCTCATAACAATCACCATTA
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * *
437406 TTTTGAAGTTTGGGACGCAAAAATACATTCCCTTCATTGGGATAGACTGACATTGACGCTTTGGT
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAC-GACATTGACGCTTTGGT
* * *
437471 GTCACAAGAAAAGCTTTTTATTGCACCGTTTCTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
*
437536 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTAGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* *
437601 ATAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTAATATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
437666 AAGTCTATGTTCCTGCCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * *
437689 GAGCCAAACAAGGATTAC-AGTATTGTTCATCATTAGCTTTGTGAATAGGCACTATAAACAAATT
1 GAGCCAAACAAGGATT-CTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATT
*
437753 ATCCTCATAAGGATAAATGATATTGATGA-TTTCGTTTTCATGGAAATCTTTTCTTTTTCCTTAT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTCATGGAAATCTTTTCTTTTTCCTTAT
* * *
437817 TTTCCATAAAAATCAAAGTTCATCACTAAAATAAGACAAGTATCGATTCTCGTAACAATC-CCTA
129 TTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * * * * * * * * *
437881 TTATTTTCAAGATTAGGACCCAAAAACACAATCCCTTCAATGGGATACACGTCGTTAATGCCTTG
193 TTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTG
* * * *
437946 GTGTCACAAGACAA-CTTTTCATTCCACCGTTTTTTATATAATGAAAGTTTACCTCTGGAATAAG
258 GTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAG
*
438010 ACAAACATGAATGGTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
* *
438075 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTGTTA
388 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* *
438140 TAAAGTCTATGTTCTTGCATAAAAT
453 TAAAGTCTATGTTCCTGCCTAAAAT
* * *
438165 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTATGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* *
438230 TCATCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
438295 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCAATTCCCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
438360 TTTTCAAGATTAGGACCCATAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
** * * * * * * *
438425 TCGGAAGAAAAGCTTTT-TTCTCCACCATTTTTGATAGAATCAAAGTTTGCATCTTAAATACGAC
261 TCACAAGAAAAGCTTTTCAT-TCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * * * *
438489 AAACGTGAATGGTCATTCTAATCCTCATTCCTTTCGGGATTAGGCACCATAAACATAGTCTTCGC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * * * *
438554 ATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTTTCCGACCAATTAATATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* *
438619 AAGTCTATGCTCCTACCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * * *
438642 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAACTGCAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
** *
438707 TCCTTGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* *
438771 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAAACAAGTATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* *
438836 CTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * * *
438901 GTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATGGAATCAACGTTTACCTCT-AAAGTAAGA
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAA-TAAGA
* * * * *
438964 CATACATGAATGGTCATACTAATCCCCATTCCTTTCGGGGTTAGGCACCATAAACATTGTCATCT
324 CAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCT
* * * * * * *
439029 GATAAGTATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTTTCCGACCAATTAATAT
389 CATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTAT
* *
439094 AAAGTCTATGCTCCTACCTAAAAT
454 AAAGTCTATGTTCCTGCCTAAAAT
* * * * *
439118 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAAGTGCAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * *
439183 TCCTCGTTAGGATAAATGATATTGACGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* *
439247 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACATGTATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* *
439312 CTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * * * * *
439377 GACACAAGAAAA-CTTTTCTTTCCACCATTTTTCATGGAATCAACGTTTACCTCTAAAATAAGAC
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * *
439441 ATACATGAATGGTCATACTAATCCCCATTCCTTTCGGGGTTAGGCACCATAAACATAGTCATCTG
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * *
439506 ATAAGTATGCACGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAGTTATTATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
439571 AAGTCTATGTTCCTGCCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
*
439594 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
439659 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
439724 TCCATAAAATTCAAAGTTCATCACTTAAATCAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
439789 TTTTCAAGATTGGGACCAAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * * *
439854 TCACAAGAAAAGCTTTTCATTCCACCGCTTTTGATAAAATCAAAATTTACCTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * * * *
439919 AACATGAATGGTCATACTAATCCACATTCTTTTTGGGATTAGGGACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
*
439984 TAAGGATGCATGATAAT-AAGGCTTTGGTTTCT-AAAAAAGGCTTTCTTCTTCCGACCAATTATT
391 TAAGGATGCATGATAATGAA-GCTTTGGTTTCTCAAGAAAGGC--T-TTCTTCCGACCAATTATT
* * * *
440047 ATATAGTCAATGTTCGTGCCGAAAAT
452 ATAAAGTCTATGTTCCTGCCTAAAAT
* * * * *
440073 AAGCCTAACAAGGATTCTAGTATTGTTCATCATTAGTTATGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * * * **
440138 TCCTCTTTAGGATAAATGATATTGATCATTTTCGTTTCTTGGAAATCTTTTCTTTGGCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * * *
440203 TCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGTATCGATTCTCATAACAATCACCATTA
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * *
440267 TTTTGAAGTTTGGGACGCAAAAATACATTCCCTTCATTGGGATAGACGACATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * *
440332 TCACAAGAAAAGCTTTTTATTGCACCGTTTCTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
*
440397 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAATGTAGTCATCTCA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
* *
440462 TAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTAATATAA
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
440527 AGTCTATGTTCCTGCCTAAAAT
456 AGTCTATGTTCCTGCCTAAAAT
* *
440549 GAGCCAAACAAGGATTAC-AGTATTGTTCATCATTAGTTTTGTGAATAGGCACTATAAACAAATT
1 GAGCCAAACAAGGATT-CTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATT
*
440613 ATCCTCATAAGGATAAATGATATTGATGA-TTTCGTTTTCATGGAAATCTTTTCTTTTTCCTTAT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTCATGGAAATCTTTTCTTTTTCCTTAT
* * *
440677 TTTCCATAAAAATCAAAGTTCATCACTAAAATAAGACAAGTATCGATTCTCGTAACAATC-CCTA
129 TTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * * * * * * * * *
440741 TTATTTTCAAGATTAGGACCCAAAAACACAATCCCTTCAATGGGATACACGTCGTTAATGCCTTG
193 TTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTG
* * * *
440806 GTGTCACAAGACAA-CTTTTCATTCCACCGTTTTTTATATAATGAAAGTTTACCTCTGGAATAAG
258 GTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAG
*
440870 ACAAACATGAATGGTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
* *
440935 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTGTTA
388 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* *
441000 TAAAGTCTATGTTCTTGCATAAAAT
453 TAAAGTCTATGTTCCTGCCTAAAAT
* * *
441025 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTATGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* *
441090 TCATCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
441155 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCAATTCCCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * *
441220 TTTTCAAGATTAGGACCCATAAACACATTCCCTTCAATAGGATACACGCCATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
** * * * * * * *
441285 TCGGAAGAAAAGCTTTT-TTCTCCACCATTTTTGATAGAATCAAAGTTTGCATCTTAAATACGAC
261 TCACAAGAAAAGCTTTTCAT-TCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * * * *
441349 AAACGTGAATGGTCATTCTAATCCTCATTCCTTTCGGGATTAGGCACCATAAACATAGTCTTCGC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * * * *
441414 ATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTTTCCGACCAATTAATATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* *
441479 AAGTCTATGCTCCTACCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * * *
441502 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAACTGCAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
** *
441567 TCCTTGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* *
441631 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAAACAAGTATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* *
441696 CTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * *
441761 GTCGCAAGAAAAGCTTTTCATTCCACCATTTTTTATAGGAATCAATGTTTACCTCT-AAAGTAAG
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATA-GAATCAAAGTTTACCTCTGAAA-TAAG
* *
441825 ACATACATGAATGGTCATACTAATCCCCATTCTTTT-GGGATTAAGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
* * * *
441889 TTATAAGGATGCCTGATAATGAAGCTTTAGGTTTCTTAAGAAAGGCTTTTTTCCTGACCAATTA-
388 TCATAAGGATGCATGATAATGAAGCTTT-GGTTTCTCAAGAAAGGCTTTCTTCC-GACCAATTAT
* *
441953 TATATAGTCTATGCTTCGTGACCTAAAAT
451 TATAAAGTCTATG-TTCCTG-CCTAAAAT
* *
441982 GAGCCAAACAAGGATTCTAGTATTGTTCACCATTAGTTTTGTGATTAGGAACTACAAACACAA-T
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACA-AATT
** *
442046 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTCGCACATAT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTAT
* * * *
442110 TTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGACTCTCATCACAATCTTCAT
129 TTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
442174 TCTTTTCAAGATTGGGATGCCC-AAAACACATTCCCTTCACTAGGATACACGTCATTAATGCCTT
194 TCTTTTCAAGATTGGGA--CCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTT
* *
442238 GGTGTCACAAGAAAA-CTTTTCATTCCACCAGTTTTTTATATAATCAACGTTTACCTCTGAAATA
257 GGTGTCACAAGAAAAGCTTTTCATTCCACC-GTTTTTTATAGAATCAAAGTTTACCTCTGAAATA
* *
442302 AGACAATACATGAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAATCGTAGTC
321 AGACAA-ACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTC
* * *
442367 ATCT-ATAAGGATGCTTGACAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCATTTA
385 ATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTA
442431 TTATAAAGTCTATGTTCCTGCCTAAAAT
450 TTATAAAGTCTATGTTCCTGCCTAAAAT
* *
442459 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
442524 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * * *
442589 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCAATTATCGTAACAATCTCTATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
442654 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACAAAATTGACGCTTTAGG-
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTT-GGT
* * * * * * *
442718 GTCGA-AAGAAAAGCTTTT-TTTCTATCGTTTTCTATAGAATCAAAGTTTGCATCTTAAATAAGA
260 GTC-ACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGA
* * ** * * *
442781 TAAACGTGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCACAAACGTAGTCTTCG
324 CAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCT
* * * * *
442846 CATAAGGATGCCTCATAA-GAAAGCTTTAGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTCTTA
389 CATAAGGATGCATGATAATG-AAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
**
442910 TAAAGTCTATGTTGGTGCCTAAAAT
453 TAAAGTCTATGTTCCTGCCTAAAAT
* * **
442935 GAGCCAAACAA-GATTCTAGTATTGTTCACCATTAGTTTTGTGATTAGGTACTACAAACGCATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * **
442999 TCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCATGGTAATCTTTTCTTTGCCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
443064 TCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCATAACAATCTACTTTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * *
443128 TTTTCAAGATTGGGATCCAAAAACACTTTCCCTTTATTAGGATAGACGACATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * **
443193 TCACAAGAAAAGCTTTTCATTCCATCGTTTTTGATAGAGTCAAAGTTTACCTCCAAAATAAGACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * *
443258 AATATGAATGGTCATACCAATCCCTATTCTTTTCGGGATTTGGCACCATAAACGTAGTCATCTCG
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
*
443323 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTGTAA
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
443388 AGTCTATGTT-CTAGCCTAAAAT
456 AGTCTATGTTCCT-GCCTAAAAT
* * *
443410 GAGCCAAACAAGGATTCAAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAGCAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * *
443475 TCCTCATTAGGATAAATGATATTGATGATTCTCTTTTCTTGGAAATCTTTTCTTTTTCCTTGTTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
*
443540 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
*
443605 TTTTCAAGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * *
443670 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTTTACTTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * * *
443735 AACATGAATGGTCATACTAATCCCCATTATTTTTGGGATTAGGCACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
* * * * *
443800 TAAGGATGCATGATAATGAGGCTTTGGTTTCTCAAAAAAGGCTTTCTTTCAACCAATTATTATAT
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
*
443865 AGTCTATGTTCGTGCCTAAAAT
456 AGTCTATGTTCCTGCCTAAAAT
* * * * * *
443887 AAGCCTAATAAGGATTCTAGTATTGTTCATCATTAGTTATGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* * * * **
443952 TCCTCATTAGGATAAATGATATTGATCACTTTCATTTCTTGGAAATCTTTTCTTTGGCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
444017 TCCTT-AAAATCAAAGTTTATCACTTAAATGAGACAAGCATCGATTCTCATAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * * *
444081 TTTTCAAGATTGGGACCCAAAGACGCATTCCCTTCATTAGGATGCACGTCATTAATGCCTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
*
444146 TCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATATAATCAAAGTTTACCTCTGAAATAAGACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * *
444210 AA-ATGAATGGTCATACTAATCCCTATTCTTTTCGGGATTAGGCACCATAAAAGTAGT-ATTCGC
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCA-TCTC
* * * * * *
444273 ATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAAAAAGGCTTTTTTCTGACCAATTATTATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
*
444338 AAGTCTATGCTCCTGCCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * * *
444361 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTTATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* *
444426 TCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* * * * * *
444490 TTACTT-AAAATCAAAGTTCGTCACTTAAATAAGACAAGTATCAATTCTCGTAATAATCTCTATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* ** *
444554 CTTTTCAAGATTGGGACGCAAAAACACATTCCCTTCATTAGGATACGTGACGTTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* *
444619 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAGTAAGGC
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * *
444684 AAACATCAATGGTCATACTAATCCTCATTCTTTTTGGGATTAAGCACCATCAACGTAGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * *
444749 ATAAGGATGCATGATAATGAACCTTTGGTTTCTCAAAAAAGGCTTT-TTACTGACCAATTATTAT
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT-CCGACCAATTATTAT
* *
444813 ATAGTCTATGTTCGTGCCTAAAAT
454 AAAGTCTATGTTCCTGCCTAAAAT
* *
444837 GAGCCAAACAAGGATTCTAGTATTGTTCACCATTAGTTTTGTGATTAGGAACTACAAACACAA-T
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACA-AATT
*** *
444901 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTCGCCCATATT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATT
* * * *
444966 TTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGACTCTCATCACAATCTTCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
** * * * * * *
445030 CTTTTCAAGATTGGGATGCACAAACACATTCCCTTCAATAGGATACACGTCATTAATGCCTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
*
445095 GTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATATAATCAAAGTTTACCTCTGAAATAAGAC
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* *
445159 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAATCGTAGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* * *
445224 ATAAGGATGCTTGACAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCATTTATTATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
445289 AAGTCTATGTTCCTGCCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * *
445312 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAAATA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
*
445377 TCCTCATTCA-GATAAATGATATTGATGATTTTCTTTTCGTGGAAATCTTTTCTTTTTCCTTATT
66 TCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATT
*
445441 TTCCTTAAAAATGAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* * * *
445506 ATTTTCAAGATTGGGACACAAAAACACATTCCTTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * * *
445571 GTCACAAGAATAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTTTACCTCTG-AACAAGAG
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * * *
445635 AAACATGAATTGTCATACTAATCCCCATTCTTTTTGGGATTAGGCATCGTCAACGTTGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* *
445700 ATAAGGATGCGTGATAATGAAGCTTCGGTTTCTCAA-AAATGGCTTTCTTCCGACCAATTATTAT
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTAT
* *
445764 ATAGTCTATGTTCGTGCCTAAAAT
454 AAAGTCTATGTTCCTGCCTAAAAT
* * * * *
445788 TAGCCTAATAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
**
445853 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGGCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * * * *
445918 TCCTT-AAAATCAAAGTTCACCTCTTAAATAAGACAAGCATCGATTCTCGGAACAGTCTCCATTG
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * * * *
445982 TTTTCAAGATTGAGACCCGAAAACGCATTACTTTCATTAGGATACATGACATTGATGCTTCGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * * * *
446047 TCGCAGGAAAA-CTTTTCATTCCACCATTTTTCATAGAATCAACGTTTACCTCTAAAATAAAACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * *
446111 AACATGAATGGTCATACTAATCCCCATTCCTTTT-TGGATTAGACACCCTAAACGTAGTCATCTC
326 AACATGAATGGTCATACTAATCCCCATT-CTTTTCGGGATTAGGCACCATAAACGTAGTCATCTC
* *
446175 ATAAGGATGCATGATTATGAAGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCGACCAATTATTATA
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
*
446240 AAGTCTATGTTCCTACCTAAAAT
455 AAGTCTATGTTCCTGCCTAAAAT
* * *
446263 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAAGCACTATAAATAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
* *
446328 TCCTCATTAGGATATATGATATTGATGATTTTCTTTTCATGGAAATCTTTCCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * ** *
446393 TCCTTGAAAATCAACGTTCATCACTTAAACGAGACAAGCATTGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * *
446458 CTTTCAAGATTGGGACCCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGATTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* *
446523 TCACAAGAAAA-CTTTTCATTCCCCCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
* *
446587 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAGCATAAATGTAGTCATCTCA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
* *
446652 TAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTAATATAA
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
446717 AGTCTATGTTCCTGCCTAAAAT
456 AGTCTATGTTCCTGCCTAAAAT
446739 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTA-AAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
*
446803 TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* *
446868 TCCTTAAAAATCATAGTTCATCACTTAAATGAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * *
446933 TTTTCAAGATTAGGACCTAAAAACACATTCTCTTCATTAGGATACACGACATTGAAGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
*
446998 TCACATGAAAAGCTTTTCATTCCA
261 TCACAAGAAAAGCTTTTCATTCCA
447022 TTCTTGCAAA
Statistics
Matches: 9638, Mismatches: 1033, Indels: 210
0.89 0.09 0.02
Matches are distributed among these distances:
473 8 0.00
474 525 0.05
475 1343 0.14
476 3699 0.38
477 2552 0.26
478 562 0.06
479 323 0.03
480 254 0.03
481 30 0.00
488 1 0.00
489 1 0.00
490 1 0.00
491 2 0.00
493 1 0.00
494 1 0.00
495 1 0.00
498 1 0.00
499 1 0.00
501 1 0.00
502 272 0.03
503 59 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (477 bp):
GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTACAAACAAATTA
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
TCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAATAAGACA
AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCA
TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
AGTCTATGTTCCTGCCTAAAAT
Found at i:438596 original size:953 final size:952
Alignment explanation
Indices: 435757--447021 Score: 16047
Period size: 953 Copynumber: 11.8 Consensus size: 952
435747 GATCCTAACA
* * * * *
435757 GAGCCAAACAAGGATTCTAGTACTGTTCGTCATTAGTTTTGTGATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
* *
435822 TCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* * * * * *
435886 TTCCTT-AAAGTCAACGTTCATCACTTAAATAAGAGAAGTATCGATTCTCATAACAATCTCTATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
*
435950 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGGTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * *
436015 GTCACAAGAAAA-CTTTTCCTTCCACCATTTTTCATAGAATCAACA-TTTACCTCTAAAATAAGA
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAA-AGTTTACCTCTGAAATAAGA
* * *
436078 CATACATGAATGGCCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCATCT
324 CAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCAT----A-A---A-C-
*
436143 GATTAGGCTCCATAAAAGTAGTCTTCGCATAAGGACGCATGATAATGAAGCTTTGGTTTCTCAAG
379 G--TA-G-T-C--------A-TC-T--CATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAG
* * * * *
436208 AAAGGCTTTCTTCCGACCAGTTATTATAAAGTCTATGTTCCTGCCTAAAAAGCGCCAAACAAGGA
427 AAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGA
* * * * * * * *
436273 TTCTAGTATTGTTAATCATTGGTTTTGTGATTGGGCACCATAAACACATTATCCTTATTATGATA
492 TTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATA
* *
436338 AATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTTTGCTTAAAATCAAA
557 AATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAA
* *
436403 GTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGA
622 GTTCATCACTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGA
* * * * *
436468 CCCAAAAACACATTCCCTTCAATAGGATACACGTCATTAATGCCTTGGTGTCACAAGAAAACTTT
687 CCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAACTTT
* * * * *
436533 TAATTCCACCGTTTTTTATATAATCAAAGTTTACCTCTTAAAATAAGACAAGCAAGAATGGTCAT
752 TCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTC-TGAAATAAGACAAACATGAATGGTCAT
* *
436598 ACTAATCCCCATTCTTTTCGGGATTAGGCATCATAAACGTAGTCATCTCATAAGGACGCATGATA
816 ACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATA
* * *
436663 ATAAAGCTTTGGTTTCTCAAGAAAGGTTTTCTTCCGACCAATTATTAAAAAGTCTATGTTCCTGC
881 ATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGC
436728 CTAAAAT
946 CTAAAAT
*
436735 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
*
436800 TCCTCATTAGGATAAATGATATTGATGATTTCCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
436865 TCCATAAAATTCAAAGTTCATCACTTAAATCAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
436930 TTTTCAAGATTGGGACCAAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * *
436995 TCACAAGAAAAGCTTTTCATTCCACCGCTTTTGATAAAATCAAAATTTACCTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * * *
437060 AACATGAATGGTCATACTAATCCACATTCTTTTTGGGATTAGGGACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCA
* * *
437125 TAAGGATGCATGATAAT-AAGGCTTTGGTTTCTAAAAAAAGGCTTTCTTCCGACCAATTATTATA
391 TAAGGATGCATGATAATGAA-GCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATA
* * * * * *
437189 TAGTCAATGTTCGTGCCGAAAATAAGCCTAACAAGGATTCTAGTATTGTTCATCATTAGTTATGT
455 AAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGT
* * * *
437254 GATTAGGAACTACAAACACATTATCCTCTTTAGGATAAATGATATTGATCATTTTCGTTTCTTGG
520 GATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
*
437319 AAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTATCG
585 AAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCG
* * * * * * *
437384 ATTCTCATAACAATCACCATTATTTTGAAGTTTGGGACGCAAAAATACATTCCCTTCATTGGGAT
650 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGAT
* * * *
437449 AGACTGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTTATTGCACCGTTTCTTATAGAATCA
715 ACAC-GACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATAGAATCA
437514 AAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAG
778 AAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAG
* *
437579 GCACCATAAATGTAGTCATCTCATAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAGGC
843 GCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGC
*
437644 TTTCTTCCGACCAATTAATATAAAGTCTATGTTCCTGCCTAAAAT
908 TTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* *
437689 GAGCCAAACAAGGATTAC-AGTATTGTTCATCATTAGCTTTGTGAATAGGCACTATAAACAAATT
1 GAGCCAAACAAGGATT-CTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATT
*
437753 ATCCTCATAAGGATAAATGATATTGATGA-TTTCGTTTTCATGGAAATCTTTTCTTTTTCCTTAT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTCATGGAAATCTTTTCTTTTTCCTTAT
* * *
437817 TTTCCATAAAAATCAAAGTTCATCACTAAAATAAGACAAGTATCGATTCTCGTAACAATC-CCTA
129 TTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * * * * * * * * *
437881 TTATTTTCAAGATTAGGACCCAAAAACACAATCCCTTCAATGGGATACACGTCGTTAATGCCTTG
193 TTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTG
* * * * *
437946 GTGTCACAAGACAA-CTTTTCATTCCACCGTTTTTTATATAATGAAAGTTTACCTCTGGAATAAG
258 GTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAG
* *
438010 ACAAACATGAATGGTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATC
*
438075 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTGTTA
388 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTA
* * *
438140 TAAAGTCTATGTTCTTGCATAAAATGAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTT
453 TAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTT
* * * * * *
438205 ATGATTAGGCACTATAAACAAATTATCATCGTTAGGATAAATGATATTGATGATTTTCTTTTCAT
518 GTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAT
** *
438270 GGAAATCTTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCA
583 GGAAATCTTTTCTTTGGCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCA
* * * * *
438335 TCAATTCCCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCATAAACACATTCCCTTCATTAG
647 TCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAG
** * * *
438400 GATACACGACATTGACGCTTTGGTGTCGGAAGAAAAGCTTTT-TTCTCCACCATTTTTGATAGAA
712 GATACACGACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCAT-TCCACCGTTTTTTATAGAA
* * * * * * * *
438464 TCAAAGTTTGCATCTTAAATACGACAAACGTGAATGGTCATTCTAATCCTCATTCCTTTCGGGAT
775 TCAAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGAT
* * * * * *
438529 TAGGCACCATAAACATAGTCTTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAA
840 TAGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA
* * * *
438594 GGCTTTTTTCCGACCAATTAATATAAAGTCTATGCTCCTACCTAAAAT
905 GGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* * ** *
438642 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAACTGCAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
** *
438707 TCCTTGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* *
438771 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAAACAAGTATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* *
438836 CTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * * *
438901 GTCACAAGAAAA-CTTTTCTTTCCACCATTTTTCATGGAATCAACGTTTACCTCT-AAAGTAAGA
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAA-TAAGA
* * * * * *
438964 CATACATGAATGGTCATACTAATCCCCATTCCTTTCGGGGTTAGGCACCATAAACATTGTCATCT
324 CAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCT
* * * * * * * *
439029 GATAAGTATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAAGGCTTTTTTCCGACCAATTAATAT
389 CATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAT
* * * *
439094 AAAGTCTATGCTCCTACCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTG
454 AAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTG
* * * *
439159 TGATTAGGAAGTGCAAACACATTATCCTCGTTAGGATAAATGATATTGACGATTTTCTTTTCATG
519 TGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* *
439224 GAAATCTTTTCTTT-GCACTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACATGTA
584 GAAATCTTTTCTTTGGC-CTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCA
* * *
439288 TCGATTCTCGTAACAATCTCCATTCTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAG
647 TCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAG
* * * * *
439353 GATACACGACATTGACGCTTTGGTGACACAAGAAAACTTTTCTTTCCACCATTTTTCATGGAATC
712 GATACACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATAGAATC
* * * * *
439418 AACGTTTACCTCTAAAATAAGACATACATGAATGGTCATACTAATCCCCATTCCTTTCGGGGTTA
777 AAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTA
* * * *
439483 GGCACCATAAACATAGTCATCTGATAAGTATGCACGATAATGAAGCTTTGGTTTCTCAAGAAAGG
842 GGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGG
*
439548 CTTTCTTCCGACCAGTTATTATAAAGTCTATGTTCCTGCCTAAAAT
907 CTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
439594 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
439659 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * *
439724 TCCATAAAATTCAAAGTTCATCACTTAAATCAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
439789 TTTTCAAGATTGGGACCAAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * * *
439854 TCACAAGAAAAGCTTTTCATTCCACCGCTTTTGATAAAATCAAAATTTACCTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * * *
439919 AACATGAATGGTCATACTAATCCACATTCTTTTTGGGATTAGGGACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCA
*
439984 TAAGGATGCATGATAAT-AAGGCTTTGGTTTCT-AAAAAAGGCTTTCTTCTTCCGACCAATTATT
391 TAAGGATGCATGATAATGAA-GCTTTGGTTTCTCAAGAAAGGCTTTCTTC-T--GACCAATTATT
* * * * * *
440047 ATATAGTCAATGTTCGTGCCGAAAATAAGCCTAACAAGGATTCTAGTATTGTTCATCATTAGTTA
452 ATAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTT
* * * *
440112 TGTGATTAGGAACTACAAACACATTATCCTCTTTAGGATAAATGATATTGATCATTTTCGTTTCT
517 TGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCA
*
440177 TGGAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGTA
582 TGGAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCA
* * * * * * *
440242 TCGATTCTCATAACAATCACCATTATTTTGAAGTTTGGGACGCAAAAATACATTCCCTTCATTGG
647 TCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAG
* * * *
440307 GATAGACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTTATTGCACCGTTTCTTATAGAAT
712 GATACACGACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATAGAAT
440372 CAAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATT
776 CAAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATT
* *
440437 AGGCACCATAAATGTAGTCATCTCATAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAG
841 AGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAG
*
440502 GCTTTCTTCCGACCAATTAATATAAAGTCTATGTTCCTGCCTAAAAT
906 GCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
*
440549 GAGCCAAACAAGGATTAC-AGTATTGTTCATCATTAGTTTTGTGAATAGGCACTATAAACAAATT
1 GAGCCAAACAAGGATT-CTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATT
*
440613 ATCCTCATAAGGATAAATGATATTGATGA-TTTCGTTTTCATGGAAATCTTTTCTTTTTCCTTAT
65 ATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTCATGGAAATCTTTTCTTTTTCCTTAT
* * *
440677 TTTCCATAAAAATCAAAGTTCATCACTAAAATAAGACAAGTATCGATTCTCGTAACAATC-CCTA
129 TTTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * * * * * * * * *
440741 TTATTTTCAAGATTAGGACCCAAAAACACAATCCCTTCAATGGGATACACGTCGTTAATGCCTTG
193 TTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTG
* * * * *
440806 GTGTCACAAGACAA-CTTTTCATTCCACCGTTTTTTATATAATGAAAGTTTACCTCTGGAATAAG
258 GTGTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAG
* *
440870 ACAAACATGAATGGTCATAGTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATC
*
440935 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTGTTA
388 TCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTA
* * *
441000 TAAAGTCTATGTTCTTGCATAAAATGAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTT
453 TAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTT
* * * * * *
441065 ATGATTAGGCACTATAAACAAATTATCATCGTTAGGATAAATGATATTGATGATTTTCTTTTCAT
518 GTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAT
** *
441130 GGAAATCTTTTCTTTTTCCTTATTTTCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCA
583 GGAAATCTTTTCTTTGGCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCA
* * * * * *
441195 TCAATTCCCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCATAAACACATTCCCTTCAATAG
647 TCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAG
* ** * * *
441260 GATACACGCCATTGACGCTTTGGTGTCGGAAGAAAAGCTTTT-TTCTCCACCATTTTTGATAGAA
712 GATACACGACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCAT-TCCACCGTTTTTTATAGAA
* * * * * * * *
441324 TCAAAGTTTGCATCTTAAATACGACAAACGTGAATGGTCATTCTAATCCTCATTCCTTTCGGGAT
775 TCAAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGAT
* * * * * *
441389 TAGGCACCATAAACATAGTCTTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAGAAA
840 TAGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA
* * * *
441454 GGCTTTTTTCCGACCAATTAATATAAAGTCTATGCTCCTACCTAAAAT
905 GGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* * ** *
441502 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTGATTAGGAACTGCAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
** *
441567 TCCTTGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* *
441631 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAAACAAGTATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* *
441696 CTTTTCAAGGTTGGGACCCAAAAACACATTCCCTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * *
441761 GTCGCAAGAAAAGCTTTTCATTCCACCATTTTTTATAGGAATCAATGTTTACCTCT-AAAGTAAG
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATA-GAATCAAAGTTTACCTCTGAAA-TAAG
* *
441825 ACATACATGAATGGTCATACTAATCCCCATTC-TTTTGGGATTAAGCACCATAAACGTAGTCATC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATC
* * * *
441889 TTATAAGGATGCCTGATAATGAAGCTTTAGGTTTCTTAAGAAAGGCTTTTTTCCTGACCAATTA-
388 TCATAAGGATGCATGATAATGAAGCTTT-GGTTTCTCAAGAAAGGCTTTCTT-CTGACCAATTAT
* *
441953 TATATAGTCTATGCTTCGTGACCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCACCATTAG
451 TATAAAGTCTATG-TTCGTG-CCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAG
*
442018 TTTTGTGATTAGGAACTACAAACACAATATCCTCATTAGGATAAATGATATTGATGATTTTCTTT
514 TTTTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* *
442083 TCATGGAAATCTTTTC-TTCGCACATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACA
579 TCATGGAAATCTTTTCTTTGGC-CTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACA
* * *
442147 AGCATCGACTCTCATCACAATCTTCATTCTTTTCAAGATTGGGATGCCC-AAAACACATTCCCTT
643 AGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGA--CCCAAAAACACATTCCCTT
* * * * *
442211 CACTAGGATACACGTCATTAATGCCTTGGTGTCACAAGAAAACTTTTCATTCCACCAGTTTTTTA
706 CATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACC-GTTTTTTA
* *
442276 TATAATCAACGTTTACCTCTGAAATAAGACAATACATGAATGGTCATACTAATCCCCATTCTTTT
770 TAGAATCAAAGTTTACCTCTGAAATAAGACAA-ACATGAATGGTCATACTAATCCCCATTCTTTT
* * * *
442341 CGAGATTAGGCACCATAATCGTAGTCATCT-ATAAGGATGCTTGACAATGAAGCTTTGGTTTCTC
834 CGGGATTAGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTC
*
442405 AAGAAAGGCTTTCTTCCGACCATTTATTATAAAGTCTATGTTCCTGCCTAAAAT
899 AAGAAAGGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
*
442459 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
442524 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * * *
442589 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCAATTATCGTAACAATCTCTATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* *
442654 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACAAAATTGACGCTTTAGG-
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTT-GGT
* * * * * *
442718 GTCGA-AAGAAAAGCTTTT-TTTCTATCGTTTTCT-ATAGAATCAAAGTTTGCATCTTAAATAAG
260 GTC-ACAAGAAAAGCTTTTCATTCCACCGTTTT-TGATAGAATCAAAGTTTACCTCTGAAATAAG
* * * * *
442780 ATAAACGTGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCACAAACGTAGTCTTC
323 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATC
* * * * *
442845 GCATAAGGATGCCTCATAA-GAAAGCTTTAGTTTCTCAAGAAAGGCTTTCTT-TCGACCAATTCT
388 TCATAAGGATGCATGATAATG-AAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCT-GACCAATTAT
* *
442908 TATAAAGTCTATGTTGGTGCCTAAAATGAGCCAAACAA-GATTCTAGTATTGTTCACCATTAGTT
451 TATAAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTT
* * *
442972 TTGTGATTAGGTACTACAAACGCATTATCCTTATTAGGATAAATGATATTGATGATTTTCTTTTC
516 TTGTGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
* *
443037 ATGGTAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGC
581 ATGGAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGC
* * * * *
443102 ATCGATTCTCATAACAATCTACTTTCTTTTCAAGATTGGGATCCAAAAACACTTTCCCTTTATTA
646 ATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTA
* * * *
443167 GGATAGACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCATCGTTTTTGATAGAG
711 GGATACACGACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCATTCCACCGTTTTTTATAGAA
** * * *
443232 TCAAAGTTTACCTCCAAAATAAGACAAATATGAATGGTCATACCAATCCCTATTCTTTTCGGGAT
775 TCAAAGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGAT
* *
443297 TTGGCACCATAAACGTAGTCATCTCGTAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA
840 TAGGCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA
*
443362 GGCTTTCTTCCGACCAATTATTGTAAAGTCTATGTT-CTAGCCTAAAAT
905 GGCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCCT-GCCTAAAAT
* *
443410 GAGCCAAACAAGGATTCAAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAGCAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
* * *
443475 TCCTCATTAGGATAAATGATATTGATGATTCTCTTTTCTTGGAAATCTTTTCTTTTTCCTTGTTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
*
443540 TCCTTAAAAATCAAAGTTCATCACTTAAATGAGACAAGCATCGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
*
443605 TTTTCAAGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
* * * *
443670 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTTTACTTCTGAAACAAGAGA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * * * *
443735 AACATGAATGGTCATACTAATCCCCATTATTTTTGGGATTAGGCACCATCAACGTTGTAATCTTA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCA
* * *
443800 TAAGGATGCATGATAATGAGGCTTTGGTTTCTCAAAAAAGGCTTTCTT-TCAACCAATTATTATA
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCT-GACCAATTATTATA
* * * * *
443864 TAGTCTATGTTCGTGCCTAAAATAAGCCTAATAAGGATTCTAGTATTGTTCATCATTAGTTATGT
455 AAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGT
* * * *
443929 GATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATCACTTTCATTTCTTGG
520 GATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
* *
443994 AAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTTATCACTTAAATGAGACAAGCATCG
585 AAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCG
* *
444059 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAGACGCATTCCCTTCATTAGGAT
650 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGAT
* * * * * *
444124 GCACGTCATTAATGCCTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATATAATCAAA
715 ACACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATAGAATCAAA
*
444189 GTTTACCTCTGAAATAAGACAAA-ATGAATGGTCATACTAATCCCTATTCTTTTCGGGATTAGGC
780 GTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGC
* * * * * *
444253 ACCATAAAAGTAGT-ATTCGCATAAGGATGCCTGATAATGAAGCTTTAGTTTCTTAAAAAAGGCT
845 ACCATAAACGTAGTCA-TCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCT
* * *
444317 TTTTTCTGACCAATTATTATAAAGTCTATGCTCCTGCCTAAAAT
909 TTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* * * * *
444361 GAGCCAAACAAGGATTCTAGTATTGTTCGTCATTAGTTTTGTTATTAGGAACTACAAACACATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
* *
444426 TCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTC-TTTGCACTTATT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTC-CTTATT
* * * * * *
444490 TTACTT-AAAATCAAAGTTCGTCACTTAAATAAGACAAGTATCAATTCTCGTAATAATCTCTATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* ** *
444554 CTTTTCAAGATTGGGACGCAAAAACACATTCCCTTCATTAGGATACGTGACGTTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * *
444619 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTGAAGTAAGGC
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * *
444684 AAACATCAATGGTCATACTAATCCTCATTCTTTTTGGGATTAAGCACCATCAACGTAGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTC
* *
444749 ATAAGGATGCATGATAATGAACCTTTGGTTTCTCAAAAAAGGCTTT-TTACTGACCAATTATTAT
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTT-CTGACCAATTATTAT
* *
444813 ATAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCACCATTAGTTTTG
454 AAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTG
*
444878 TGATTAGGAACTACAAACACAATATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
519 TGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* * *
444943 GAAATCTTTTCTTCGCCCATATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATC
584 GAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATC
* * * ** * *
445008 GACTCTCATCACAATCTTCATTCTTTTCAAGATTGGGATGCACAAACACATTCCCTTCAATAGGA
649 GATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGA
* * * * *
445073 TACACGTCATTAATGCCTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATATAATCAA
714 TACACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATAGAATCAA
*
445138 AGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGG
779 AGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGG
* * *
445203 CACCATAATCGTAGTCATCTCATAAGGATGCTTGACAATGAAGCTTTGGTTTCTCAAGAAAGGCT
844 CACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCT
*
445268 TTCTTCCGACCATTTATTATAAAGTCTATGTTCCTGCCTAAAAT
909 TTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* *
445312 GAGCCAAACAAGGATTATAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAAATA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
*
445377 TCCTCATTCA-GATAAATGATATTGATGATTTTCTTTTCGTGGAAATCTTTTCTTTTTCCTTATT
66 TCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATT
*
445441 TTCCTTAAAAATGAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
130 TTCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* * * *
445506 ATTTTCAAGATTGGGACACAAAAACACATTCCTTTCACTAGGATACACGACATTGACGCTTTGGT
195 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGT
* * * *
445571 GTCACAAGAATAGCTTTTCATTCCACCGTTTTTGATAAAATCAAAGTTTACCTCTG-AACAAGAG
260 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGAC
* * * * *
445635 AAACATGAATTGTCATACTAATCCCCATTCTTTTTGGGATTAGGCATCGTCAACGTTGTCATCTC
325 AAACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTC
* * *
445700 ATAAGGATGCGTGATAATGAAGCTTCGGTTTCTCAA-AAATGGCTTTCTTCCGACCAATTATTAT
390 ATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCTGACCAATTATTAT
* * * *
445764 ATAGTCTATGTTCGTGCCTAAAATTAGCCTAATAAGGATTCTAGTATTGTTCATCATTAGTTTTG
454 AAAGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTG
445829 TGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
519 TGATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* *
445894 GAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCACCTCTTAAATAAGACAAGCATC
584 GAAATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATC
** * * * * * * *
445959 GATTCTCGGAACAGTCTCCATTGTTTTCAAGATTGAGACCCGAAAACGCATTACTTTCATTAGGA
649 GATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGA
* * * * * * *
446024 TACATGACATTGATGCTTCGGTGTCGCAGGAAAACTTTTCATTCCACCATTTTTCATAGAATCAA
714 TACACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATAGAATCAA
* * * *
446089 CGTTTACCTCTAAAATAAAACAAACATGAATGGTCATACTAATCCCCATTCCTTTT-TGGATTAG
779 AGTTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATT-CTTTTCGGGATTAG
* * * *
446153 ACACCCTAAACGTAGTCATCTCATAAGGATGCATGATTATGAAGCTTTGGTTTCTTAAGAAAGGC
843 GCACCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGC
*
446218 TTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTACCTAAAAT
908 TTTCTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
* *
446263 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAAGCACTATAAATAAATTA
1 GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
* *
446328 TCCTCATTAGGATATATGATATTGATGATTTTCTTTTCATGGAAATCTTTCCTTTTTCCTTATTT
66 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
* * ** *
446393 TCCTTGAAAATCAACGTTCATCACTTAAACGAGACAAGCATTGATTCTCGTAACAATCTCCATTC
131 TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * *
446458 CTTTCAAGATTGGGACCCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGATTTGGTG
196 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
*
446523 TCACAAGAAAA-CTTTTCATTCCCCCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
261 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
* * *
446587 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAGCATAAATGTAGTCATCTCA
326 AACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCA
* * *
446652 TAAGGATGCATGATAATGACGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTAATATAA
391 TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAA
*
446717 AGTCTATGTTCCTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTG
456 AGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTG
* * *
446782 ATTAGGCACTA-AAACAAATTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTCATGGA
521 ATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGA
** * *
446846 AATCTTTTCTTTTTCCTTATTTTCCTTAAAAATCATAGTTCATCACTTAAATGAGACAAGCATCG
586 AATCTTTTCTTTGGCCTTATTTTCCTT-AAAATCAAAGTTCATCACTTAAATAAGACAAGCATCG
* * * *
446911 ATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCTAAAAACACATTCTCTTCATTAGGAT
650 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGAT
* *
446976 ACACGACATTGAAGCTTTGGTGTCACATGAAAAGCTTTTCATTCCA
715 ACACGACATTGACGCTTTGGTGTCACAAGAAAA-CTTTTCATTCCA
447022 TTCTTGCAAA
Statistics
Matches: 9201, Mismatches: 995, Indels: 208
0.88 0.10 0.02
Matches are distributed among these distances:
949 2 0.00
950 797 0.09
951 2035 0.22
952 1221 0.13
953 2355 0.26
954 884 0.10
955 798 0.09
956 166 0.02
957 537 0.06
958 62 0.01
966 1 0.00
967 1 0.00
968 1 0.00
970 1 0.00
971 1 0.00
972 1 0.00
975 1 0.00
978 120 0.01
979 130 0.01
980 87 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (952 bp):
GAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTGATTAGGCACTATAAACAAATTA
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTTTCCTTATTT
TCCTTAAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTGAAATAAGACA
AACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCATCTCA
TAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAA
AGTCTATGTTCGTGCCTAAAATGAGCCAAACAAGGATTCTAGTATTGTTCATCATTAGTTTTGTG
ATTAGGAACTACAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGA
AATCTTTTCTTTGGCCTTATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAGCATCGA
TTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATA
CACGACATTGACGCTTTGGTGTCACAAGAAAACTTTTCATTCCACCGTTTTTTATAGAATCAAAG
TTTACCTCTGAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCA
CCATAAACGTAGTCATCTCATAAGGATGCATGATAATGAAGCTTTGGTTTCTCAAGAAAGGCTTT
CTTCCGACCAATTATTATAAAGTCTATGTTCCTGCCTAAAAT
Found at i:448912 original size:476 final size:474
Alignment explanation
Indices: 447099--448986 Score: 1961
Period size: 476 Copynumber: 4.0 Consensus size: 474
447089 CCGAAATGGA
*** * *
447099 GGAAAGAAAAGCTTTTCTTGCGACACCAAAATGTCAATGTCTTGTATCCTAATGAAAGGAATGTG
1 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCAAATGAAGGGAATGTG
* * *
447164 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGTTGCTTCTCTTTTTAGGG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTAAGG
* * * *
447229 GATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAATATTTCCATGCACAAGAAAATCATCAA
131 GATAAACTTTGATTTTAAGGAAAATA-GGAAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAA
* * * * *
447294 TATCTTTTTTCC-AACTAAGGTGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAATGATCAA
195 TATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAAAGATCAA
*** * * * *
447358 TATTGGAATCCATGTTTGGCTCTTTTGAGGCACGAACTTAAACATGACAAAAATTGGTTGGAAAA
259 TACAAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGGTGGGAAAA
* * * * * * * * *
447423 AAGCCTTTCTTGCAAAAACAATGCATCAATATTGCGTATCGTGATGAGAAGAC-A-GCATTTTTG
324 AAGCCTTTCTTGCAAAAACAAAGCACCAATATCGTGCATCCTAATGAAAAGACTATG--TTTATG
* * * * * *
447486 TTGCCTAATCTCGAACAGAGTGGGGATCAGTATGACTACTCATGTTTGTTTTATTTAAAAGGCAA
387 GTGCCTAATCTCGAAAAGAGTAGGGATCAGTATGACTATTCATGTTTGTTTTATTTAAGAGGAAA
* *
447551 ACTTTGATTCTATCAAAAATGGT
452 ACTTTGATTTTATCAAAAACGGT
* * * * *
447574 AGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCGATGTCTTGTATTCTAATGAAGGGAATTTG
1 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCAAATGAAGGGAATGTG
* * * * *
447639 TTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTT-TTTAAG
* *
447704 GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATTATCA
130 GGATAAACTTTGATTTTAAGGAAAATA-GGAAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCA
* * * * *
447769 ATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCAT
194 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAAAGATCAA
* * * ** * * ** *
447834 TAGTAA-AATCCATGTTTGTCTTATTTGAGGCTTGAACTTAGACTTTACAATAATCAGTGGGTAA
259 TA-CAAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGGTGGGAAA
* *
447898 AAAGCCTTTCTTGCAAAACCAAAGCACCCATATCGTGCATCCTAATGAGAAA-ACTATGTTTATG
323 AAAGCCTTTCTTGCAAAAACAAAGCACCAATATCGTGCATCCTAATGA-AAAGACTATGTTTATG
** * * * * * *
447962 GTAACTAATCTCGAAAA-AATTGGGAACAGTATGAGTATTCATGTTTGTTTTATTTAAGCGAAAA
387 GTGCCTAATCTCGAAAAGAGTAGGGATCAGTATGACTATTCATGTTTGTTTTATTTAAGAGGAAA
** * *
448026 ACAGTAATTTTATCAAAAACGAT
452 ACTTTGATTTTATCAAAAACGGT
* * * * *
448049 GGAAAGAAAAGCTGTTCTTGCGACGCCAAAGCATCAATGTCATGTAT-CATAATGGATGGAATGT
1 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCA-AATGAAGGGAATGT
* * *
448113 GTTTTTGGTT-CTCAATTTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTTTTAA
65 GTTTTTGGTTCCT-AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTAA
* **
448177 GGGATGAACTTTGATTTT-------ATAGGGAAAAGAAACTATTTCCAAGCAAAAGAAAATCATC
129 GGGATAAACTTTGATTTTAAGGAAAATA-GGAAAAGAAAAGATTTCCAAGCAAAAGAAAATCATC
* * * * *
448235 AATATC-TGTTATCCAAATGAGGAGAATGTGTTTATAATGCCCAAACCCAAAATGAATGATGATT
193 AATATCAT-TTATCCTAATGAGGAGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAAAGATC
** * * * *
448299 AATACTGGAATCCATGTTTGGCTC-TTTCAAGGCATGAACTTAGACTTTACAAAAATTGGAGGGA
257 AATACAAGAATCCATGTTTGGCTCATTT-GAGGCACGAACTTAGACATTACAAAAATTGGTGGGA
** * * * * * ** *
448363 AAAAAGCCTTTCTTGCAAAAACAAAGCATTAATATTGTGCATCTTTATGAGAAGACAACATTTTT
321 AAAAAGCCTTTCTTGCAAAAACAAAGCACCAATATCGTGCATCCTAATGAAAAGACTATGTTTAT
* * * * * *
448428 GTTGCCTAATCTGGAAAAGAGTAGGGATCAGTAAGACTATTCATATTTGTCTTATTTAAGAGGGA
386 GGTGCCTAATCTCGAAAAGAGTAGGGATCAGTATGACTATTCATGTTTGTTTTATTTAAGAGGAA
*
448493 AACTTTGATTTTATAAAAAACGGT
451 AACTTTGATTTTATCAAAAACGGT
* * *
448517 GGAAAGAAAAGATTTTCTTGCGACACCAAAGCGTCAATGTCTTGTATCCAAATGAAGGGAATGCG
1 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCAAATGAAGGGAATGTG
* * * * * ** *
448582 TTTTTGGATCCTAATCTTGAAAAGAATGGGGACTATTATGGGAATTAATGCTTATCTTATTTAAG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTT-TTTAAG
* * * * *
448647 GGACAAACTTTGATTTTAATGAAAATAGGACAAAGAAAAGCTTTCCATGCGAAAGAAAATCATCA
130 GGATAAACTTTGATTTTAAGGAAAATAGGA-AAAGAAAAGATTTCCAAGCAAAAGAAAATCATCA
** * * ** * * *
448712 ATATCACATATCCTAATGAGGAGAATGTGCTTATAGTGCCTAGTCACAAAATGTATAAAGATCAT
194 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAAAGATCAA
* * * * *
448777 TACAAGAATCCATGTTTGTCTCAATTGAGGCACAAACTTAGACATTACAACAATTGGTTGGAAAA
259 TACAAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGGTGGGAAAA
* * * * *
448842 AAGCCTTTCTTGC-GAAACTTAAGCACCAATGTCGTGTATCCTAATGAAAAGACTATGTTTAGGG
324 AAGCCTTTCTTGCAAAAAC-AAAGCACCAATATCGTGCATCCTAATGAAAAGACTATGTTTATGG
* * * * *
448906 TGCCTAATC-CTGATAAA-AATGGGGAAT-AGTATG-CGCATTTATGTTTGTCTTATTTAAGA-G
388 TGCCTAATCTC-GA-AAAGAGTAGGG-ATCAGTATGAC-TATTCATGTTTGTTTTATTTAAGAGG
*
448966 ACAAACTTT-ATTCTATCAAAA
449 A-AAACTTTGATTTTATCAAAA
448987 CCAAAGTAAA
Statistics
Matches: 1154, Mismatches: 227, Indels: 64
0.80 0.16 0.04
Matches are distributed among these distances:
466 6 0.01
467 201 0.17
468 153 0.13
469 25 0.02
474 24 0.02
475 284 0.25
476 447 0.39
477 13 0.01
478 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCAAATGAAGGGAATGTG
TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTAAGG
GATAAACTTTGATTTTAAGGAAAATAGGAAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCCAAACCCAAAATGAATAAAGATCAATA
CAAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGGTGGGAAAAAA
GCCTTTCTTGCAAAAACAAAGCACCAATATCGTGCATCCTAATGAAAAGACTATGTTTATGGTGC
CTAATCTCGAAAAGAGTAGGGATCAGTATGACTATTCATGTTTGTTTTATTTAAGAGGAAAACTT
TGATTTTATCAAAAACGGT
Found at i:449516 original size:535 final size:537
Alignment explanation
Indices: 448510--449521 Score: 1302
Period size: 535 Copynumber: 1.9 Consensus size: 537
448500 ATTTTATAAA
* * * *
448510 AAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCGTCAATGTCTTGTATCCAAATGAAGG
1 AAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCAAACGAAAG
* * * * * * *
448575 GAATGCGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTATTATGGGAATTAATGCTTATCTT
66 GAAGGCGTTTTAGGATCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTATCTT
* * * *
448640 ATTTAAGGGACAAACTTTGATTTTAATGAAAATAGGACAAAGAAAAGCTTTCCATGCGAAAGAAA
131 ATTTAAAGGACAAACTTTGATTTTAATGAAAATAGGACAAAGAAAAGATTTCCACGCAAAAGAAA
* * * *
448705 ATCATCAATATCACATATCCTAATGAGGAGAATGTGCTTATAGTGCCTAGTCACAAAATGTATAA
196 ATCATCAATATCACATATCCTAATGAGGAGAATGTGCTTACAATGCCTAATCACAAAATGAATAA
* * * * * *
448770 AGATCATTACAAGAATCCATGTTTGTCTCAATTGAGGCACAAACTTAGACATTACAACAATTGGT
261 AGATCAATACAAGAATCCAGGTTTATCTCAATTGAGACACAAACTTAAACATTACAAAAATTGGT
* * * ** * *
448835 TGGAAAAAAGCCTTTCTTGCGAAACTTAAGCACCAATGTCGTGTATCCTAATGAAAAGACTATGT
326 TGGAAAAAAGCCTTTCCTACAAAACCAAAGCACCAATATCATGTATCCTAATGAAAAGACTATGT
* * * * * *
448900 TTAGGGTGCCTAATCCTGATAAAAATGGGGAATAGTATGCGCATTTATGTTTGTCTTATTTAAGA
391 TTAGGGTGCCTAATCCTCAAAAAAATGGGGAATAGAATGCGCACTCATGTTTGTCTTAGTTAAGA
448965 GACAAACTTTATTCTATCAAAACCAAAGTAAAAACATTTCTTATTTAAGGGATGAAACAAACTTT
456 GACAAACTTTATTCTATCAAAACCAAAGTAAAAACATTTCTTATTTAAGGGATGAAACAAACTTT
449030 TACTTTGATTCTACGAG
521 TACTTTGATTCTACGAG
* * *
449047 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC-ACGCATCAATGTCATGTATCCTAACGAAAG
1 AAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCAAACGAAAG
* * * * * * *
449111 GAAGGTGTTTTAGGTTCCCAATC-TGTAATATAATGGAGACTGTTACGAGAATCGATGCTTGTCT
66 GAAGGCGTTTTAGGATCCCAATCTTG-AAAAGAATGGAGACTATTACGAGAATCAATGCTTATCT
* * *
449175 T-TTTAAAGGACTAATTTTGATTTTAA-GAAGAATAGGGCAAAGAAAAGATTTCCACGCAAAAGA
130 TATTTAAAGGACAAACTTTGATTTTAATGAA-AATAGGACAAAGAAAAGATTTCCACGCAAAAGA
** *
449238 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAAT
194 AAATCATCAATATCACATATCCTAATGAGGAGAATGTGCTTACAATGCCTAATCACAAAATGAAT
* * * * *
449303 GAAGATCAATACTAGAATCCAGGTTTATCTCATTTGAGACACGAACTTAAACTTTACAAAAATTG
259 AAAGATCAATACAAGAATCCAGGTTTATCTCAATTGAGACACAAACTTAAACATTACAAAAATTG
* * *
449368 G-TGGGAAAAAGCTTTTCCTACAAAACCAAAGC-CCTAATATCATGTATCCTAATGAGAAGACTA
324 GTTGGAAAAAAGCCTTTCCTACAAAACCAAAGCACC-AATATCATGTATCCTAATGAAAAGACTA
* * * *
449431 TGTTTATGGTGCCTAATCC-CAAAAATAATGGGGAGTAGAATGAC-TACTCATGTTTGTTTTAGT
388 TGTTTAGGGTGCCTAATCCTCAAAAA-AATGGGGAATAGAATG-CGCACTCATGTTTGTCTTAGT
* *
449494 TAGGAGGCAAACTTTGATTCTATCAAAA
451 TAAGAGACAAACTTT-ATTCTATCAAAA
449522 ACGATGGAAA
Statistics
Matches: 401, Mismatches: 68, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
533 6 0.01
534 111 0.28
535 179 0.45
536 72 0.18
537 33 0.08
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (537 bp):
AAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCAAACGAAAG
GAAGGCGTTTTAGGATCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTATCTT
ATTTAAAGGACAAACTTTGATTTTAATGAAAATAGGACAAAGAAAAGATTTCCACGCAAAAGAAA
ATCATCAATATCACATATCCTAATGAGGAGAATGTGCTTACAATGCCTAATCACAAAATGAATAA
AGATCAATACAAGAATCCAGGTTTATCTCAATTGAGACACAAACTTAAACATTACAAAAATTGGT
TGGAAAAAAGCCTTTCCTACAAAACCAAAGCACCAATATCATGTATCCTAATGAAAAGACTATGT
TTAGGGTGCCTAATCCTCAAAAAAATGGGGAATAGAATGCGCACTCATGTTTGTCTTAGTTAAGA
GACAAACTTTATTCTATCAAAACCAAAGTAAAAACATTTCTTATTTAAGGGATGAAACAAACTTT
TACTTTGATTCTACGAG
Found at i:451541 original size:533 final size:537
Alignment explanation
Indices: 450515--451543 Score: 1380
Period size: 533 Copynumber: 1.9 Consensus size: 537
450505 TAGGAGGCAA
* *
450515 ACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCT
1 ACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* * * * * * *
450580 TGTATCCTAATGAAAGGAATCTGTTTTTGGATCCTAATCTTGAAAAGAATAGGGATTGTTATGAG
66 TGTATCCTAACGAAAGGAAGCTGTTTTAGGATCCCAATCCTGAAAAGAATAGGGACTGTTACGAG
* *
450645 AATCGATGCTTAGCTTATTTAAGGGATAAACTTTGATTTTAACGAAAATCGGTCAAAAAAAAGCT
131 AATCGATGCTTAGCTTATTTAAGGGATAAACTTCGATTTTAACGAAAATCGGT-AAAAAAAAGAT
* *
450710 TTCCATGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGCGCTTATAGTGCCTA
195 TTCCACGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGCGCTTATAATGCCTA
* *
450775 ATCACAAAATTAATAAAGATCATTACAAGAATCCATGTTTGTCCCACTTAAGGCACGAACTTAGA
260 ATCACAAAATGAATAAAGATCATTACAAGAATCCATGATTGTCCCACTTAAGGCACGAACTTAGA
* * * * ** * * *
450840 TTTTACAATAATTAGTTGGAAAAAAACCTTTCTTGCGAAACTTAAGCACCAATGTCGTGTATCCT
325 CTTTACAAAAATTAGGTGGAAAAAAACCTTTCTTGCAAAACCAAAGCACCAATATCATATATCCT
* *
450905 AATGAAAAAACTATGTTTGTGGTGCCTAATCCTAAAAAGAATGGGGAATAGTATGCGCATTCATG
390 AATGAAAAAACTATGTTTGTGGTGCCTAATCCCAAAAAGAATGGGGAATAGAATGCGCATTCATG
* *
450970 TTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACAAAGTAAACGCATTTCTTATTTAA
455 TTTGTCTTAGTTAAGAGACAAACTTTGATTCTATCAAAAACAAAGTAAACGCATTTCTTATTTAA
451035 AGGATGAAAAAAACTTTT
520 AGGATGAAAAAAACTTTT
* *
451053 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC-ACGCATCAATGTCA
1 ACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
* * *
451117 TGTATCCTAACGAAAGGAAGGTGTTTTAGGCTCCCAATCCTGAAAATAAT-GGAGACTGTTACGA
66 TGTATCCTAACGAAAGGAAGCTGTTTTAGGATCCCAATCCTGAAAAGAATAGG-GACTGTTACGA
* * *
451181 GAATCGATGCTT-GTCTT-TTTGAGGGATGAACTTCGATTTTAA-GAAAAAT-GG-ATAAAAAAT
130 GAATCGATGCTTAG-CTTATTTAAGGGATAAACTTCGATTTTAACG-AAAATCGGTA-AAAAAAA
* * * *
451241 GATTTCCACGCCAAAGAAAATCATCAATATGA-TTAATCCTAATGAGGAGAATGTGTTTATAATG
192 GATTTCCACGCAAAAGAAAATCATCAATATCACTT-ATCCTAATGAGGAGAATGCGCTTATAATG
* * ** * * *
451305 CCTACTCACAAAATGAATAAAGATCATTACTAGAATCCATGATTGTCTTATTTGAGGCACGGACT
256 CCTAATCACAAAATGAATAAAGATCATTACAAGAATCCATGATTGTCCCACTTAAGGCACGAACT
* * * *
451370 T-GAACTTTACAAAAATT-GGTGGGAAAAAGCTTTTCTTGTAAAACCAAAGC-CCTAATATCATA
321 TAG-ACTTTACAAAAATTAGGTGGAAAAAAACCTTTCTTGCAAAACCAAAGCACC-AATATCATA
* * * *
451432 TATCCTAATGAGAAGACTATGTTTGTGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGAC-T
384 TATCCTAATGAAAAAACTATGTTTGTGGTGCCTAATCCCAAAAAGAATGGGGAATAGAATG-CGC
* *
451496 ATTCATGTTTGTCTTAGTTAGGAGACAAACTTTGATTTTATCAAAAAC
448 ATTCATGTTTGTCTTAGTTAAGAGACAAACTTTGATTCTATCAAAAAC
451544 GGTGGAAAGA
Statistics
Matches: 426, Mismatches: 57, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
532 2 0.00
533 135 0.32
534 130 0.31
535 3 0.01
536 30 0.07
537 78 0.18
538 48 0.11
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (537 bp):
ACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
TGTATCCTAACGAAAGGAAGCTGTTTTAGGATCCCAATCCTGAAAAGAATAGGGACTGTTACGAG
AATCGATGCTTAGCTTATTTAAGGGATAAACTTCGATTTTAACGAAAATCGGTAAAAAAAAGATT
TCCACGCAAAAGAAAATCATCAATATCACTTATCCTAATGAGGAGAATGCGCTTATAATGCCTAA
TCACAAAATGAATAAAGATCATTACAAGAATCCATGATTGTCCCACTTAAGGCACGAACTTAGAC
TTTACAAAAATTAGGTGGAAAAAAACCTTTCTTGCAAAACCAAAGCACCAATATCATATATCCTA
ATGAAAAAACTATGTTTGTGGTGCCTAATCCCAAAAAGAATGGGGAATAGAATGCGCATTCATGT
TTGTCTTAGTTAAGAGACAAACTTTGATTCTATCAAAAACAAAGTAAACGCATTTCTTATTTAAA
GGATGAAAAAAACTTTT
Found at i:452599 original size:471 final size:472
Alignment explanation
Indices: 451053--452977 Score: 2221
Period size: 471 Copynumber: 4.1 Consensus size: 472
451043 AAAAACTTTT
* * * *
451053 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC-ACGCATCAATGTCA
1 ACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * *
451117 TGTATCCTAACGAAAGGAAGGTGTTTTAGGCTCCCAATCCTGAAAATAATGGAGACTGTTACGAG
66 TGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATTACGAG
* * * * *
451182 AATCGA-TGCTTGTCTT-TTTGAGGGATGAACTTCGATTTTAAGAAAA-ATGG-ATAA-AAAATG
131 AATC-ATTGCTTGCCTTATTTAAGGGATAAACTTCGATTTTAGGAAAATAGGGCA-AAGAAAA-G
* * * * *
451242 ATTTCCACGCCAAAGAAAATCATCAATATGATTAATCCTAATGAGGAGAATGTGTTTATAATGCC
193 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCC
* * * * ** * * *
451307 TACTCACAAAATGAATAAAGATCATTACTAGAATCCATGATTGTCTTATTTGAGGCACGGACTTG
258 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCCCATTTGAGGCATGAACTAG
* * *
451372 AACTTTACAAAAATTGGTGGGAAAAAGCTTTTCTTGTAAAACCAAAGC-CCTAATATCATATATC
323 AACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCACC-AATATCATGTATC
*
451436 CTAATGAGAAGACTATGTTTGTGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGACTATTCA
387 CTAATGAGAAG--TATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGACTATTCA
* * *
451501 TGTTTGTCTTAGTTAGGAGACAA
450 TGTTTGTCTTATTTAAGAGGCAA
* * ** *
451524 ACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTGATGTCT
1 ACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * * * * * * * *
451589 TGTATCCTAATGAAGGGAATCTATTTTTGGATCCTAATCCTGAAAAGAATAGG-GACTGTTATGG
66 TGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAAT-GGAGACTATTACGA
451653 GAATCATTGCTTGCCTTATTTAAGGGATAAACTTCGATTTTAGGAAAATAGGGCAAAGAAAAGAT
130 GAATCATTGCTTGCCTTATTTAAGGGATAAACTTCGATTTTAGGAAAATAGGGCAAAGAAAAGAT
* * *
451718 TTCCATGCAAAAGAAAATTATCAACATCATTTATCCTAATGAGAAGAATGTGTTTACAATGCCTA
195 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTA
* * * *
451783 ATCCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCTTGAACTTAG-
260 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCCCATTTGAGGCATGAAC-TAGA
* * *
451847 ACTTTACAATAATTGGTGGGTAGAAAA-ACTTT-TTGGCAAAACCAAAGCACC-----CATATAT
324 ACTTTACAAAAATTGGTGGG-A-AAAAGCCTTTCTT-GCAAAACCAAAGCACCAATATCATGTAT
* * *** *
451905 CCTAGTGAGAAAACTATGTTTATGGTGCCTAATCTTTAAAAGAATGGAGAGTAGAATGACTATTC
386 CCTAATGAG--AAGTATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGACTATTC
*
451970 ATGTTTATCTTATTTAAGAGGCAA
449 ATGTTTGTCTTATTTAAGAGGCAA
* * * *
451994 ACTTTGATTCTATTAAAAATGCTGGGAAGAAAAG-TTATTCTTGCAACACCAAAGCATCAATGTC
1 ACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTT-TTCTTGCAACACCAAAGCATCAATGTC
* * * * *
452058 TTGTATCCTAATGAAGGGAATGCGTTTTAGGTTCCCAATACTGAAAATAATGGAGACTATTAGGA
65 ATGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATTACGA
* *
452123 GAATCATTGCTTGCCTTATTTATAGGG-TAAACTTTGATTTTAGGAAAAATAGGGCAAGGAAAAG
130 GAATCATTGCTTGCCTTATTTA-AGGGATAAACTTCGATTTTAGG-AAAATAGGGCAAAGAAAAG
* * * ** *
452187 ATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAAAGCGGAGAATGTGTTTGTAGTGCC
193 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCC
* * * *
452252 TAATCATAAAATGAATGAAGATCAATACTGGAATCCATGTTTGGCCCTTTTGAGGCATGAACCTA
258 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCCCATTTGAGGCATGAA-CTA
* * * * * *
452317 G-ACTTCACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACGAAAGCATCAATATCGTGTAT
322 GAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCAAAACCAAAGCACCAATATCATGTAT
* ** *
452381 CCTTATGAGAAG-A-GTACATGGTGCCTAATCCCAAAAAGAATGGGGATTA-ATATGACTATTCA
386 CCTAATGAGAAGTATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGAGTAGA-ATGACTATTCA
452443 TGTTTGTCTTATTTAAGAGGCAA
450 TGTTTGTCTTATTTAAGAGGCAA
*
452466 AC-TTGAATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
1 ACTTTG-ATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
* ** * * * * *
452530 ATGTATCCTAATAAAAATAATGTGTTTTTGGTTCCCAATCTTGAACA-AATGGAGATTATTACTA
65 ATGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATTACGA
* * * * * * * *
452594 GAATCAATGCTTGTCTTATCTAATGGATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAAGA
130 GAATCATTGCTTGCCTTATTTAAGGGATAAACTTCGATTT-TAGGAAAATAGGGCAAAGAAAAGA
* * *
452659 TTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGGGGAGAATTTGTTTACAATGCCT
194 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCT
* * *
452724 AATC-CAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTG
259 AATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCCCATTTGAGGCATGAACTAG
* * * *
452788 AACTTTACAAAAATTGGTGCGAAAAAGCTTTTCCTGCGAAAA-CAAAGCCCCAATATCATGTATC
323 AACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGC-AAAACCAAAGCACCAATATCATGTATC
* * **
452852 CTAATGAGAAGATTATGTTTGTGGTGCCTAATCCCAAAAGGAATATGGAGTAGAATGACTATTCA
387 CTAATGAGAAG--TATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGACTATTCA
*
452917 TGTTTGTCTTAGTTT-GGAGGCAA
450 TGTTTGTCTTA-TTTAAGAGGCAA
* * * *
452940 ACTTTGATTTTGTAAAAAATGGTGGAAAGTGAAAGCTT
1 ACTTTGATTCTATAAAAAACGGTGGAAAG-AAAAGCTT
452978 ATCAAGTAAC
Statistics
Matches: 1235, Mismatches: 176, Indels: 82
0.83 0.12 0.05
Matches are distributed among these distances:
469 5 0.00
470 274 0.22
471 415 0.34
472 233 0.19
473 33 0.03
474 220 0.18
475 37 0.03
476 18 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (472 bp):
ACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
TGTATCCTAATGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGACTATTACGAG
AATCATTGCTTGCCTTATTTAAGGGATAAACTTCGATTTTAGGAAAATAGGGCAAAGAAAAGATT
TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCCCATTTGAGGCATGAACTAGAAC
TTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCATGTATCCTAA
TGAGAAGTATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGAGTAGAATGACTATTCATGTTTG
TCTTATTTAAGAGGCAA
Found at i:453735 original size:21 final size:23
Alignment explanation
Indices: 453711--453768 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 23
453701 TACAAGCCAA
*
453711 TGTATCGATACA-TAT-TTTTTG
1 TGTATCGATACATTATATATTTG
453732 TGTATCGATACATTATACATATTTG
1 TGTATCGATACATTAT--ATATTTG
453757 TGTATCGATACA
1 TGTATCGATACA
453769 AGTTTGGCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 12 0.38
22 3 0.09
25 17 0.53
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (23 bp):
TGTATCGATACATTATATATTTG
Found at i:455360 original size:475 final size:476
Alignment explanation
Indices: 454143--456830 Score: 2991
Period size: 475 Copynumber: 5.7 Consensus size: 476
454133 AGATCCTAAC
* * *
454143 AGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAATGTCTTGTATCCTATTGAAGGGAATATG
1 AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATATG
* * ** *
454208 TTTTTGGATCCTAATCTTGAAAAGAATGGAGACTATTACGGGAATCGTTGCTTGCCTTA-TTAAG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAG
* *
454272 GGATAAACTTTGATTTT-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAAATTATC
131 GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATC
* * *
454336 AATATCATTTATCTTAATGAGAAGAATGTGTTTACAATGCCTAATCCCAAAATGAATAAAGATCA
195 AATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGATCA
* * ** * * *
454401 TCACTAGAATCCATGTTTGTATCATTTAAGGCTTGAATTTAGACTTTACAATAATTGGTGGGTAA
260 TTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
454466 AAAGCCTTTCTTGCAAAACCAAAGCACCCATATCGTGTATCC-TAGTGAGAAAACTATGTTTATG
325 AAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTA-TGAGAAGACTATGTTTATG
* * *
454530 GTGCCTAATCTCGAAAAGAATGGGGAGTAGA-ATGACTATTCATGTTTATCTTATTTAAGAGGCA
389 GTGCCTAATCTCGAAAAGAATAGGGAATA-ATATGACTATTCATGTTTATCTTATTTAAGAGACA
*
454594 AACTTTGATTCTATCAAAAATGCT
453 AACTTTGATTCTATCAAAAATGGT
* * * *
454618 -GAGAAGAAAAGCTATTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGATGGGAATAT
1 AGA-AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATAT
* * * * * ** *
454682 GCTTTAGGTTCCTAATCCTGAAAATAATGGAGATTGTTAGGAGAATCGTTGCTTGCCTTATTTAA
65 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAA
454747 GGGATAAACTTTGATTTT-AGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
130 GGGATAAACTTTGATTTTAAGG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * ** *
454811 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTACTCACGTAATGAATGAAGATC
194 CAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGATC
* ** ** *
454876 ATTACTAGAATCCATGTTTGGCTCATTTGGGGCATAAACTTAGACTTTACAAAAATTTGTGGGAA
259 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * ** *
454941 GAAAGCCTTTCTTGCGAAACGAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATA
324 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
** * * * * *
455006 GTAACTAATCCCGAAAAAAATAGGGAACAATATGAGTATTCATGTTTTTCTTATTTAAGCA-ACA
389 GTGCCTAATCTCGAAAAGAATAGGGAATAATATGACTATTCATGTTTATCTTATTTAAG-AGACA
** * *
455070 AACAGTGATTCAATCAAAAACGGT
453 AACTTTGATTCTATCAAAAATGGT
* * * *
455094 AGAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCAT-TATCCTAACAAAGGGAATATG
1 AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATATG
** * * * * * *
455158 AGTTTGGTTCCTAATCTTGCAATGAATAGTGACTGTTATAAGAATAGTTGCTTGTCTTA-TTAAG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAG
* * *
455222 GGATGAACTTTGATTTTAAGGAAAAATAAGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
131 GGATAAACTTTGATTTTAAGG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* *
455287 AATATC-TTATATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCCCAAAATGAATGAAGATC
195 AATATCATT-TATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGATC
* * * *** * *
455351 ATCACTAGAATCCATGTTTGTATCATTTAAAGCTTAAATTTAGACTTTA-AAATAATTGGTGGGT
259 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAA-AATTGGTGGGA
* * *
455415 AAAAAGCCTTTCTTGCAAAACCAAAGCACCCATATCGTGTATCC-TAGTGAGAAAACTATGTTTA
323 AAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTA-TGAGAAGACTATGTTTA
* *
455479 TGGTGCCTAATCTCGAAAAGAATAGGGAGTAGA-ATGACTATTCATGTTTATCTTATTTAAGAGG
387 TGGTGCCTAATCTCGAAAAGAATAGGGAATA-ATATGACTATTCATGTTTATCTTATTTAAGAGA
455543 CAAACTTTGATTCTATCAAAAATGGT
451 CAAACTTTGATTCTATCAAAAATGGT
* * * *
455569 AGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTCGTATCCTAATAAAGGGAATGTG
1 AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATATG
* * * * * * *
455634 TTTTTGGTTCCTAATCTTGAAAAGAGTGG-GGCTGTCACAAAAATTGGTGCTTATCTTATTTAAG
66 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAG
** * * * *
455698 GGATAAACTTTGATTTTAATAAAAATAGGGCAAAGTAAAGCTGTCCATGCAAAAAAAAAAAAATC
131 GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC----AAAAGAAAATC
* * * ***
455763 ATCAATATCACTTATTCTAATAAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGAATAAAGA
192 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGA
* * * *
455828 TCATAACAAGAATCCATGTTTGTCTCACTTAAGGCACGAACTTAGACTTTACAATAATTGGTGGG
257 TCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
** *
455893 AAAAAAGCCTTTCTTGCGAAACCTCAGCACCAATATCGTGTATCCTAATGAGAAGACTATGTTTA
322 AAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * ** * * *
455958 TGGTGCCTAATCTTGAGAAGAATAGGGTTTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGAC
387 TGGTGCCTAATCTCGAAAAGAATAGGGAATAATATGACTATTCATGTTTATCTTATTTAAGAGAC
* * ** *
456023 AGACTTTGATGCTATCGGAAACGGT
452 AAACTTTGATTCTATCAAAAATGGT
* * * * * * *
456048 -GAGAAGAATAGCTTTTCTTGCAACTCCAAGGCATCAAAGTCTTGTATCCTAATAAAAGAAATGT
1 AGA-AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATAT
* * * * * * ** * ***
456112 GTTTTAGGTTCCCAATCCTAAAAACAATGGAGGCTACTA-AGAGAGTCAAAGCTTGTCTTATTTA
65 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACA-AGAATCGTTGCTTGTCTTATTTA
* *
456176 AGGGATAAACTTTCATTTTAAGGAAAATA--G----G----G-------TG---AAGAAAATCTT
129 AGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
456221 CAATATCATTTATTCTAATGAGGAGAATGTGTAT-C-GTGCCTAATCACAAAATGAATAAAGATC
194 CAATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGATC
* * * **
456284 ATTTCTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTAGACTTTACAGCAATTGGT-GGAA
259 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * * *
456348 AAAAACCTTTCTTGTGAAAGCGAAGCACCGATATCGTATATCCTAATGAGAAGACTATG-TTATG
324 AAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * ** * * *
456412 GTGCCTAATCCCGAAAAGAATGGGGAATTGTATGAGTATTCTTGTTTGTCTTATTTAAGAGA-AA
389 GTGCCTAATCTCGAAAAGAATAGGGAATAATATGACTATTCATGTTTATCTTATTTAAGAGACAA
*
456476 ACATTGATTCTATCAAAAATGGTT
454 ACTTTGATTCTATCAAAAATGG-T
* * * * * * *
456500 GGAGAGAAAAGCTTTTCTTGAAACACCAAAGCATCAATGT-TGCGTATCCTAATGAAGGGGATGT
1 AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCT-TGTATCCTAATAAAGGGAATAT
* * * * *
456564 GTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA
65 GTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAA
* *
456629 GGCATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAATAGAAAATCATC
130 GGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * * *
456694 CATATCATTTATCCTAATGA--AGAATTTGTTTATAATGCCTAATTAGAAAATGAA-AGAAAATC
195 AATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATA-AAGATC
* ** * ** *
456756 ATTACTAGAATCCATGTTTTTCTCATTCGAGGCACGAACTTAAACTTTACAAAAATTAATGAGAA
259 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
456821 AAAAGCCTTT
324 AAAAGCCTTT
456831 ACCTTGATTT
Statistics
Matches: 1861, Mismatches: 298, Indels: 110
0.82 0.13 0.05
Matches are distributed among these distances:
451 19 0.01
452 183 0.10
453 58 0.03
454 81 0.04
456 40 0.02
458 1 0.00
462 1 0.00
463 2 0.00
469 2 0.00
470 10 0.01
471 1 0.00
472 101 0.05
473 12 0.01
474 32 0.02
475 532 0.29
476 372 0.20
477 34 0.02
478 3 0.00
479 326 0.18
480 51 0.03
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATATG
TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACAAGAATCGTTGCTTGTCTTATTTAAG
GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
ATATCATTTATCCTAATGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAATAAAGATCAT
TACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
AAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
GCCTAATCTCGAAAAGAATAGGGAATAATATGACTATTCATGTTTATCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAATGGT
Found at i:458417 original size:474 final size:473
Alignment explanation
Indices: 457404--459584 Score: 2469
Period size: 473 Copynumber: 4.6 Consensus size: 473
457394 CACTTTCACT
* * * * *
457404 TATCCTAAT-AAAGGAAAGTGTTTTTGGTACCCAATCTTGTAAAGAATAGAGACTGTTACGAGAA
1 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT-GGGACTGTTATGAGAA
*
457468 TCGATGCTTGTCTT-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAGCAAAATATT
65 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAAGATT
* * * *
457531 TCTATGCAAACA-AAAATCATCAATACCACTTATCCTAATGAGGAGAATGTGTTTTTCATGCCTA
129 TCCATCCAAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTT-ATGCCTA
* * * * *
457595 ATCATAAAATGATTGAAAATCATTACTAGAATCCATGTTTTCCTCATTTGAGGCAGGAACTTAAA
192 ATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGA
* * * *** * *
457660 TTTTACAAGAATTTGTGGGAAAAAAGCCTTTCAAAC-AAAGCCAAAGCCCCGATATCGTGTATCC
257 CTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAA-CCAAAGCACCAATATCGTGTATCC
* * * * * * *
457724 TAATGAGAAGACAATGTTTCTGGTGCCTAACCCCGAAAAGAATAGGGATTAGTATGAGTCTTCAA
321 TAATGAGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGAGTATTCAT
* *
457789 GTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTGGAGAAAAAAGCTTTTCTTG
386 GTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGA-AAAAAAGCTTTTCTTG
* *
457854 CGACACCAAAGC-TCAGTGTTATG
450 CGACACCAAAGCATCAATGTCATG
* * * * * * * **
457877 TATCTTAATGAAGGGAAAGTGTTTTTGGTACCTAATCTTGTAAACAATGGAGACTGTTCCGAGAA
1 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG-GACTGTTATGAGAA
* * *
457942 TCGATGCTTGT-TGT-TTTAAGGGATGAACTTTGATTTTGAGGAAAATAGGGTAAAAAAAAGATT
65 TCGATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * * *
458005 TTCATCCAAAAGAAAATCATCTATACCACTTATCTTAATGAGGAGAATGTGTTTTTCATTCCTAA
129 TCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTT-ATGCCTAA
*
458070 TCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTACCTCATTTGAGGCACGAACTTAGAC
193 TCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGAC
* * *
458135 TTTACAATAATTAGTGGGAAAAAAGCCTTTTTTTGCGAAACCAAAGCACTAATATCGTGTATCCT
258 TTTACAAAAATTAGTGGGAAAAAAGCC-TTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCT
* * * * * *
458200 AATGAGAAGACCGTGTTTGTGGTACCTAATCCCGAAAAGAATGGGGAATAGTGTGAGTATTCATG
322 AATGAGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * * **
458265 TTTGTCTCATTTAAAAGATAAATTTTGATTTTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTAT
387 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGC
*
458330 TACACCAAAGCATCAAT-TCATG
451 GACACCAAAGCATCAATGTCATG
* ** ** *
458352 TATCCTAATGAAAGGAATGCGTTTCAGGTTCCCAATCCAGAAAATAATAGGGA-TGTTATGAGAA
1 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT-GGGACTGTTATGAGAA
* *
458416 TCAATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
65 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
458481 CCATACAAAAGAAAATCATTAATATCATTTA-CCTAATGAAGAGAAT-TTTTTTATAGTGCCTAA
130 CCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTT-TA-TGCCTAA
* * * * *
458544 TCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGGATTTAGAC
193 TCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGAC
* * * * *
458609 TTTACAATAATT-GGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATTGAGTATCCT-
258 TTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTA
* * ** * * * *
458672 ATGAGAAAACTATGTTTATGGTTTCTAATCGCAAAAAGAATGAGGAGTAGTA-CAGGTATTCATG
323 ATGAGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGA-GTATTCATG
* * * *
458736 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAGAAACGGTGGAAAGAAAAGCTTTTTTTGT
387 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGC
*
458801 GACACTAAAGCATCAATGTCATG
451 GACACCAAAGCATCAATGTCATG
* * * * * * *
458824 TATCCTATTGAAAAGAATGTGCTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTTATGTGAA
1 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG-GACTGTTATGAGAA
* * *
458889 TCGATGCGTGTCTTATTTTAGGGATGAACTTTGATTTTAAGGAAATTAGGGCAAAGAAAAGATTT
65 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
*
458954 CCA-CACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
130 CCATC-CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTA-TGCCTAA
* * * * * * *
459018 TCACAAAATGAATGAAGATCAATACTAGAATCTAATGTTTGGCTAATTTGAGGCATGAACTTAGG
193 TCATAAAATGAATGAAGATCATTACTAGAATC-CATGTTTGCCTCATTTGAGGCACGAACTTAGA
* * * ** ** *
459083 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCCTGCGAAATGAAAGCGTCAATATTGTGTATCCT
257 CTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCT
* * ** **
459148 TATGAGATGA-C---TACATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGACCATTCATG
322 AATGAGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
459209 TTTATCTTATTTAAGAGGTAAACTTGGATTCTATAAAAAATGGTGGAAAAAGAAGCTTTTCTTGC
387 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAAA-AAGCTTTTCTTGC
* *
459274 GATACCAAAGCATTAATGTCATG
451 GACACCAAAGCATCAATGTCATG
* * * * * **
459297 TATCCAAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGATATTATTACCAGAA
1 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG-GACTGTTATGAGAA
* * * * *
459362 TCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAATTAAGGCAAATAAAAGATTT
65 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * * ** *
459427 CCATTCAATAGAAAATCATCCATATTATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAAT
130 CCATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTA-TGCCTAAT
* ** * ** *
459492 CACAAAATGAAAAAAGGTTTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
194 CATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGACT
* *
459557 TTACAAAAATTAGCGAGAAAAAA-CCTTT
259 TTACAAAAATTAGTGGGAAAAAAGCCTTT
459585 ACTTTGATTC
Statistics
Matches: 1463, Mismatches: 218, Indels: 56
0.84 0.13 0.03
Matches are distributed among these distances:
470 1 0.00
471 128 0.09
472 131 0.09
473 433 0.30
474 411 0.28
475 301 0.21
476 51 0.03
477 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGACTGTTATGAGAAT
CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
CATCCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTATGCCTAATCA
TAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCACCAATATCGTGTATCCTAATG
AGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATG
Found at i:459882 original size:352 final size:355
Alignment explanation
Indices: 459278--459931 Score: 902
Period size: 352 Copynumber: 1.9 Consensus size: 355
459268 TCTTGCGATA
* * * * *
459278 CCAAAGCATTAATGTCATGTATCCAAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGA
1 CCAAAGCATCAATGTCAAGTATCCAAATGAAAGAAATGTGTTTTAGGTTCCCAATCCTAAAAAGA
* * * * * * * * *
459343 ATGGATATTATTACCAGAATCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAT
66 AAGGAGACTATCACCAAAATCAATACTTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAA
* * *
459408 TAAGGCAAATAAAAGATTTCCATTCAATAGAAAATCATCCATATTATTTATCCTAACAAGGAGAA
131 TAAGGCAAATAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAA
* * ** *
459473 TGTGTTTATAGTGCCTAATCACAAAATGAAAAAAGGTTTTTACTAGAATCCATGTTTGTCTCATT
196 TGTGTGTATAGTGCCTAATCACAAAATGAAAAAAGATCATTACTAGAATCAATGTTTGTCTCATT
*
459538 TGAGGCACGAACTTAGACTTTACAAAAATTAGCGAGAAAAAACCTTTACTTTGATTCTATGAGAA
261 TGAGGCACGAACTTAGACTTTACAAAAACTAGCGAGAAAAAACCTTTACTTTGATTCTATGAGAA
459603 ATAGTGAAAAGAAAAGTTTTTCTTGTGACC
326 ATAGTGAAAAGAAAAGTTTTTCTTGTGACC
* * * * *
459633 CCAAAGCATCATTGTCAAGTATCCTAATGAAAGAAATGTGTTTTAGGTTCCCAATCCTGAATATA
1 CCAAAGCATCAATGTCAAGTATCCAAATGAAAGAAATGTGTTTTAGGTTCCCAATCCTAAAAAGA
* *
459698 AAGGAGACTGTCA-CAAAATCAATATTTATCTTATTTAAGGGATGAACTATGA-TTTAAGAAAAA
66 AAGGAGACTATCACCAAAATCAATACTTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAA
* * * **
459761 TAGGGCCAAA-AAAAGATTTTC-TTTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
131 TAAGG-CAAATAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGA
* * **
459824 ATGTGTGTATAGTGCTTAATCATAAAATGAAGGAAGATCATTACTAGAATCAATGTTTGTCTCAT
195 ATGTGTGTATAGTGCCTAATCACAAAATGAAAAAAGATCATTACTAGAATCAATGTTTGTCTCAT
* *
459889 TTGAGGCACGAACTTAGACTTTACAAAAACTGGCGGGAAAAAA
260 TTGAGGCACGAACTTAGACTTTACAAAAACTAGCGAGAAAAAA
459932 GCCGTTCTTA
Statistics
Matches: 257, Mismatches: 41, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
352 132 0.51
353 23 0.09
354 39 0.15
355 63 0.25
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (355 bp):
CCAAAGCATCAATGTCAAGTATCCAAATGAAAGAAATGTGTTTTAGGTTCCCAATCCTAAAAAGA
AAGGAGACTATCACCAAAATCAATACTTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAA
TAAGGCAAATAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAA
TGTGTGTATAGTGCCTAATCACAAAATGAAAAAAGATCATTACTAGAATCAATGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAACTAGCGAGAAAAAACCTTTACTTTGATTCTATGAGAA
ATAGTGAAAAGAAAAGTTTTTCTTGTGACC
Found at i:460354 original size:825 final size:827
Alignment explanation
Indices: 458757--460392 Score: 2232
Period size: 825 Copynumber: 2.0 Consensus size: 827
458747 TAAGAGATAA
* * *
458757 ACTTTGATTCTATCAGAAACGGTGGAAAGAAAAGCTTTTTTTGTGACACTAAAGCATCAATGTCA
1 ACTTTGATTCTATCAGAAACAGTGAAAAGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCA
* * * * ***
458822 TGTATCCTATTGAAAAGAATGTGCTTTAGGTTCCCAATCCTGAAAATAATGGAGACTGTTATGTG
66 AGTATCCTAATGAAAAGAATGTGCTTTAGGTTCCCAATCCTGAAAATAAAGGAGACTGTCATCAA
* * * * * * *
458887 AATCGATGCGTGTCTTATTTTAGGGATGAACTTTGATTTTAAGGAAATTAGGGCAAAGAAAAGAT
131 AATCAATACGTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAATAGGGCAAAGAAAAGAT
*
458952 TTCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
196 TTCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTGTATAGTGCCTA
* *
459017 ATCACAAAATGAATGAAGATCAATACTAGAATCTAATGTTTGGCTAATTTGAGGCATGAACTTAG
261 ATCACAAAATGAAGGAAGATCAATACTAGAATCTAATGTTTGGCTAATTTGAGGCACGAACTTAG
* * * * * * ** ** *
459082 GCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCCTGCGAAATGAAAGCGTCAATATTGTGTATCC
326 ACTTTACAAAAACTGGCGGGAAAAAAGCCGTTCCTACGAAACCAAAGCACCAATATCGTGTATCC
* * * *
459147 TTATGAGATGACTACATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGACCATTCATGTTT
391 TAATGAGAAGACTACATGGTGCCGAATCCCAAAAAGAATGGGGAATAGTATGACCATTCATGTTT
** *
459212 ATCTTATTTAAGAGGTAAACTTGGATTCTATAAAAAATGGTGGAAAAAGAAGCTTTTCTTGCGAT
456 ATCTTATTTAAGAGAAAAACTTGGATTCTATAAAAAATGGTGGAAAAAGAAGCTTTTCTTGCGAC
* *
459277 ACCAAAGCATTAATGTCATGTATCCAAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAG
521 ACCAAAGCATCAATGTCATGTATCCAAATGAAAGGAATGTGGTTTTGGTTCCCAATCTTAAAAAG
* * *
459342 AATGGATATTATTACCAGAATCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
586 AATGGAGATTATTACCAGAATCAATGCTCATCTTATTTAAAGGATGAACTTTGATTTTAAGGAAA
* * ** * * * *
459407 TTAAGGCAAATAAAAGATTTCCATTCAATAGAAAATCATCCATATTATTTATCCTAACAAGGAGA
651 ATAAGGCAAAGAAAAGATTTCCATGAAAAAAAAAATCATCAATATCATTTATCCTAACAAGGAGA
* * **
459472 ATGTGTTTATAGTGCCTAATCACAAAATGAAAAAAGGTTTTTACTAGAATCCATGTTTGTCTCAT
716 ATCTGTTTATAGTGCCTAATCACAAAATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
*
459537 TTGAGGCACGAACTTAGACTTTACAAAAATTAGCGAGAAAAAACCTTT
781 TTAAGGCACGAACTT-GACTTTACAAAAATTAGCGAGAAAAAACCTTT
* * * *
459585 ACTTTGATTCTATGAGAAATAGTGAAAAGAAAAG-TTTTTCTTGTGACCCCAAAGCATCATTGTC
1 ACTTTGATTCTATCAGAAACAGTGAAAAGAAAAGCTTTTT-TTGTGACACCAAAGCATCAATGTC
* *
459649 AAGTATCCTAATG-AAAGAAATGTGTTTTAGGTTCCCAATCCTGAATATAAAGGAGACTGTCA-C
65 AAGTATCCTAATGAAAAG-AATGTGCTTTAGGTTCCCAATCCTGAAAATAAAGGAGACTGTCATC
**
459712 AAAATCAATATTTATCTTATTTAAGGGATGAACTATGA-TTTAAGAAAAATAGGGCCAAA-AAAA
129 AAAATCAATACGTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAATAGGG-CAAAGAAAA
* ***
459775 GATTTTC-TTTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTGTATAGTGC
193 GATTTCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTGTATAGTGC
* * * * *
459839 TTAATCATAAAATGAAGGAAGATCATTACTAGAATC-AATGTTTGTCTCATTTGAGGCACGAACT
258 CTAATCACAAAATGAAGGAAGATCAATACTAGAATCTAATGTTTGGCTAATTTGAGGCACGAACT
*
459903 TAGACTTTACAAAAACTGGCGGGAAAAAAGCCGTTCTTACGAAACCAAAGCACCAATATCGTGTA
323 TAGACTTTACAAAAACTGGCGGGAAAAAAGCCGTTCCTACGAAACCAAAGCACCAATATCGTGTA
** ** * **
459968 TCCTAATGAGAAGACTGTTTATGGTGCCGAATCCTGAAATGAATGGGGAATAGTATGAGTATTCA
388 TCCTAATGAGAAGAC--TACATGGTGCCGAATCCCAAAAAGAATGGGGAATAGTATGACCATTCA
* *
460033 TGTTTTTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAATGGTGGAAAGAA-AAGCTTTTCT
451 TGTTTATCTTATTTAAGAGAAAAACTTGGATTCTATAAAAAATGGTGGAAA-AAGAAGCTTTTCT
* *
460097 TGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGG-TCCCAATCTT
515 TGCGACACCAAAGCATCAATGTCATGTATCCAAATGAAAGGAATGTGGTTTTGGTTCCCAATCTT
* **
460161 GAAAAA-AATGGAGATTGTTACGTGAATCAATGCTCATCTTATTTAAAGGATGAACTTTGATTTT
580 -AAAAAGAATGGAGATTATTACCAGAATCAATGCTCATCTTATTTAAAGGATGAACTTTGATTTT
* * * *
460225 AAGGAAAATAGGGCAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATATCATTTTTCCTAAT
644 AAGGAAAATAAGGCAAAGAAAAGATTTCCATGAAAAAAAAAATCATCAATATCATTTATCCTAAC
* * * * *
460290 GAGGAGAATCTGTTTATGGTGCCTAATCAGAAAAT-AAATGAAGATCATTACTAGAATTCATGTT
709 AAGGAGAATCTGTTTATAGTGCCTAATCACAAAATGAAA-AAAGATCATTACTAGAATCCATGTT
*
460354 TGTCTCATTTAAGGCACGAACTTGACTTTGCAAAAATTA
773 TGTCTCATTTAAGGCACGAACTTGACTTTACAAAAATTA
460393 TTGGGAAAAA
Statistics
Matches: 702, Mismatches: 98, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
824 109 0.16
825 273 0.39
826 174 0.25
827 44 0.06
828 102 0.15
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (827 bp):
ACTTTGATTCTATCAGAAACAGTGAAAAGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCA
AGTATCCTAATGAAAAGAATGTGCTTTAGGTTCCCAATCCTGAAAATAAAGGAGACTGTCATCAA
AATCAATACGTATCTTATTTAAGGGATGAACTATGATTTTAAGAAAAATAGGGCAAAGAAAAGAT
TTCCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTGTATAGTGCCTA
ATCACAAAATGAAGGAAGATCAATACTAGAATCTAATGTTTGGCTAATTTGAGGCACGAACTTAG
ACTTTACAAAAACTGGCGGGAAAAAAGCCGTTCCTACGAAACCAAAGCACCAATATCGTGTATCC
TAATGAGAAGACTACATGGTGCCGAATCCCAAAAAGAATGGGGAATAGTATGACCATTCATGTTT
ATCTTATTTAAGAGAAAAACTTGGATTCTATAAAAAATGGTGGAAAAAGAAGCTTTTCTTGCGAC
ACCAAAGCATCAATGTCATGTATCCAAATGAAAGGAATGTGGTTTTGGTTCCCAATCTTAAAAAG
AATGGAGATTATTACCAGAATCAATGCTCATCTTATTTAAAGGATGAACTTTGATTTTAAGGAAA
ATAAGGCAAAGAAAAGATTTCCATGAAAAAAAAAATCATCAATATCATTTATCCTAACAAGGAGA
ATCTGTTTATAGTGCCTAATCACAAAATGAAAAAAGATCATTACTAGAATCCATGTTTGTCTCAT
TTAAGGCACGAACTTGACTTTACAAAAATTAGCGAGAAAAAACCTTT
Found at i:460582 original size:474 final size:474
Alignment explanation
Indices: 459633--461245 Score: 2312
Period size: 474 Copynumber: 3.4 Consensus size: 474
459623 TCTTGTGACC
** ** * * *
459633 CCAAAGCATCATTGTCAAGTATCCTAATGAAAGAAATGT-GTTTTAGGTTCCCAATCCTGAATAT
1 CCAAAGCATCAAGGTCTTGTATCCTAATGAAAGGAATGTGGTTTT-GG-TCCCAATCTTGAA-AA
* * ** ** * * *
459697 AAA-GGAGACTGTCAC-AAAATCAATATTTATCTTATTTAAGGGATGAACTATGA-TTTAAGAAA
63 AAATGGAGATTGTTACGCGAATCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * ** * * *
459759 AATAGGGCCAAA-AAAAGATTTTC-TTTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
128 AATAAGG-CAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGA
* * * * * * *
459822 GAATGTGTGTATAGTGCTTAATCATAAAATGAAGGAAGATCATTACTAGAA-TCAATGTTTGTCT
192 GAATCTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTC-ATGTTTGTCT
* * * *** * * *
459886 CATTTGAGGCACGAACTTAGACTTTACAAAAACTGGCGGGAAAAAAGCCGTTCTTACGAAACCAA
256 CATTTAAGGCACGAACTT-GACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAAACCAA
* * * * * *
459951 AGCACCAATATCGTGTATCCTAATGAG---AAGACTGTTTATGGTGCCGAATC-CTGAAATGAAT
320 AGCACCAATATCGCGTATCCTTATGAGAATAAAAC-GTTTATGGTGCCTAATCTC-GAAAAGATT
* * * * * * * *
460012 GGGGAATAGTATGAGTATTCATGTTTTTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAATG
383 AGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAAAGGAAAACTTTGATTCTATCAAAAATG
* * * *
460077 GTGGAAAGAAAAGCTTTTCTTGCGACA
448 ATGGAAAGAAATGCTTTTCTTACGGCA
*
460104 CCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGGTCCCAATCTTGAAAAAAA
1 CCAAAGCATCAAGGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGGTCCCAATCTTGAAAAAAA
* *
460169 TGGAGATTGTTACGTGAATCAATGCTCATCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAAT
66 TGGAGATTGTTACGCGAATCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* *
460234 AGGGCAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATATCATTTTTCCTAATGAGGAGAAT
131 AAGGCAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGAGAAT
460299 CTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTT
196 CTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTT
*
460364 AAGGCACGAACTTGACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAGACCAAAGCACC
261 AAGGCACGAACTTGACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCACC
*
460429 AATATCGCGTATCCTTGTGAGAATAAAACGTTTATGGTGCCTAATCTCGAAAAGATTAGGGATTT
326 AATATCGCGTATCCTTATGAGAATAAAACGTTTATGGTGCCTAATCTCGAAAAGATTAGGGATTT
460494 GTATGACTATTCATGTTTGTCTTATTTAAAAGGAAAACTTTGATTCTATCAAAAATGATGGAAAG
391 GTATGACTATTCATGTTTGTCTTATTTAAAAGGAAAACTTTGATTCTATCAAAAATGATGGAAAG
460559 AAATGCTTTTCTTACGGCA
456 AAATGCTTTTCTTACGGCA
* * * *
460578 CCAAAGCATCAAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTGAAAACAA
1 CCAAAGCATCAAGGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGGTCCCAATCTTGAAAAAAA
* *
460643 TGGAGATTGTTATGCGATTCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
66 TGGAGATTGTTACGCGAATCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
*
460708 AAGGCAAAGAAATGATTTCCATGCAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGAGAAT
131 AAGGCAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGAGAAT
460773 CTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTT
196 CTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTT
460838 AAGGCACGAACTTGACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCACC
261 AAGGCACGAACTTGACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCACC
460903 AATATCGCGTATCCTTATGAGAATAAAACGTTTATGGTGCCTAATCTCGAAAAGATTAGGGATTT
326 AATATCGCGTATCCTTATGAGAATAAAACGTTTATGGTGCCTAATCTCGAAAAGATTAGGGATTT
* * *
460968 GTATTACTATTCATGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAACGATGGAAAG
391 GTATGACTATTCATGTTTGTCTTATTTAAAAGGAAAACTTTGATTCTATCAAAAATGATGGAAAG
461033 AAATGCTTTTCTTACGGCA
456 AAATGCTTTTCTTACGGCA
* * * *
461052 CCAAAGCATCAAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTGAAAACAA
1 CCAAAGCATCAAGGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGGTCCCAATCTTGAAAAAAA
* * *
461117 TGGAGATTGTTATGCGATTCAATGCTCATCTTATTTAAGGGATGAACATTGATTTTAAGGAAAAT
66 TGGAGATTGTTACGCGAATCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
**
461182 AAGGCAAAGAAATGATTTCCATGCAAAAACCAAATCATCAATACCATTTTTCCTAATGAGGAGA
131 AAGGCAAAGAAATGATTTCCATG-AAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGAGA
461246 TCAACAATCT
Statistics
Matches: 1051, Mismatches: 79, Indels: 20
0.91 0.07 0.02
Matches are distributed among these distances:
469 4 0.00
470 22 0.02
471 72 0.07
472 90 0.09
473 107 0.10
474 714 0.68
475 42 0.04
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
CCAAAGCATCAAGGTCTTGTATCCTAATGAAAGGAATGTGGTTTTGGTCCCAATCTTGAAAAAAA
TGGAGATTGTTACGCGAATCAATGCTCATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
AAGGCAAAGAAATGATTTCCATGAAAAAAAAAATCATCAATACCATTTTTCCTAATGAGGAGAAT
CTGTTTATGGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTT
AAGGCACGAACTTGACTTTGCAAAAATTATTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCACC
AATATCGCGTATCCTTATGAGAATAAAACGTTTATGGTGCCTAATCTCGAAAAGATTAGGGATTT
GTATGACTATTCATGTTTGTCTTATTTAAAAGGAAAACTTTGATTCTATCAAAAATGATGGAAAG
AAATGCTTTTCTTACGGCA
Found at i:461137 original size:157 final size:157
Alignment explanation
Indices: 459936--461170 Score: 552
Period size: 158 Copynumber: 7.8 Consensus size: 157
459926 AAAAAAGCCG
* * * *
459936 TTCTTACGAAACCAAAGCACCAATATCGTGTATCCTAATGA--GAA-GACTGTTTATGGTGCCGA
1 TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATGAGGGAATG--TGTTTATGGTGCCTA
* ** * * * * * *
459998 ATCCTGAAATGAATGGGGAATAG-TA-TGAGTATTCATGTTTTTCTTATTTAAGAGAAAAACTTT
64 ATCTTGAAAACAATGGAG-ATTGTTACTGCG-ATTCATGTTTGTCTTATTTAAG-GCAGAACTTT
* * *
460061 GATTCTATAAAAAATGGTGGAAAGAAAAGCTT
126 GATTCTATCAAAAATGATGGAAAGAAATGCTT
* * * *
460093 TTCTTGCGACACCAAAGCATCAATG-TCTTGTATCCTAATGAAAGGAATGTGGTTT-TGGT-CCC
1 TTCTTACGAAACCAAAGCATCAA-GATCTTGTATCCTAATG-AGGGAATGT-GTTTATGGTGCCT
* * * * **
460155 AATCTTGAAAAAAATGGAGATTGTTAC-GTGAATCAATGCTCATCTTATTTAAAGG-ATGAACTT
63 AATCTTGAAAACAATGGAGATTGTTACTGCGATTC-ATGTTTGTCTTATTT-AAGGCA-GAACTT
* *** * *
460218 TGATTTTAAGGAAAAT-AGGGCAAAGAAATGATT
125 TGATTCTATCAAAAATGATGG-AAAGAAATGCTT
* * * ** * * * *
460251 TCCATGA-AAAAAAAAATCATCAATATCATT-TTTCCTAATGAGGAGAATCTGTTTATGGTGCCT
1 TTC-TTACGAAACCAAAGCATCAAGATC-TTGTATCCTAATGAGG-GAATGTGTTTATGGTGCCT
* * * ** * *
460314 AATC-AGAAAATAAATGAAGATCATTACTAG-AATTCATGTTTGTCTCATTTAAGGCACGAAC-T
63 AATCTTGAAAA-CAATGGAGATTGTTACT-GCGATTCATGTTTGTCTTATTTAAGGCA-GAACTT
* * *
460376 TGACTT-T-GCAAAAATTATTGGGAAA-AAA-GCCT
125 TGA-TTCTATCAAAAATGA-T-GGAAAGAAATGCTT
* * * * * ** ** ** ***
460408 TTCCTGCGAGACCAAAGCACCAATATCGCGTATCCTTGTGAGAATAAAACGTTTATGGTGCCTAA
1 TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAA
* * * * *
460473 TCTCGAAAAGATTAGG-GATT-TGTA-TGACTATTCATGTTTGTCTTATTTAAAAGG-AAAACTT
65 TCTTGAAAACAAT-GGAGATTGT-TACTG-CGATTCATGTTTGTCTTATTT--AAGGCAGAACTT
460534 TGATTCTATCAAAAATGATGGAAAGAAATGCTT
125 TGATTCTATCAAAAATGATGGAAAGAAATGCTT
** * * *
460567 TTCTTACGGCACCAAAGCATCAAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AA
1 TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* ** *
460631 TCTTGAAAACAATGGAGATTGTTA-TGCGATTCAATGCTCATCTTATTTAAGGGATGAACTTTGA
65 TCTTGAAAACAATGGAGATTGTTACTGCGATTC-ATGTTTGTCTTATTTAAGGCA-GAACTTTGA
* *** * *
460695 TTTTAAGGAAAAT-AAGGCAAAGAAATGATT
128 TTCTATCAAAAATGATGG-AAAGAAATGCTT
* * * * ** * * * * *
460725 TCCATGCAAAAAAAAATCATCAATACCATT-TTTCCTAATGAGGAGAATCTGTTTATGGTGCCTA
1 TTCTTACGAAACCAAAGCATCAAGATC-TTGTATCCTAATGAGG-GAATGTGTTTATGGTGCCTA
* * * ** * *
460789 ATC-AGAAAATAAATGAAGATCATTACTAG-AATTCATGTTTGTCTCATTTAAGGCACGAAC-TT
64 ATCTTGAAAA-CAATGGAGATTGTTACT-GCGATTCATGTTTGTCTTATTTAAGGCA-GAACTTT
* * *
460851 GACTT-T-GCAAAAATTATTGGGAAA-AAA-GCCT
126 GA-TTCTATCAAAAATGA-T-GGAAAGAAATGCTT
* * * * ** * ** ***
460882 TTCCTGCGAAACCAAAGCACCAATATCGCGTATCCTTATGAGAATAAAACGTTTATGGTGCCTAA
1 TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATGAG-GGAATGTGTTTATGGTGCCTAA
* * * * * *
460947 TCTCGAAAAGATTAGG-GATT-TGTATTACTATTCATGTTTGTCTTATTTAAAAGGCA-AACTTT
65 TCTTGAAAACAAT-GGAGATTGT-TACTGCGATTCATGTTTGTCTTATTT--AAGGCAGAACTTT
*
461009 GATTCTATCAAAAACGATGGAAAGAAATGCTT
126 GATTCTATCAAAAATGATGGAAAGAAATGCTT
** * * *
461041 TTCTTACGGCACCAAAGCATCAAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AA
1 TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* ** * *
461105 TCTTGAAAACAATGGAGATTGTTA-TGCGATTCAATGCTCATCTTATTTAAGGGATGAACATTGA
65 TCTTGAAAACAATGGAGATTGTTACTGCGATTC-ATGTTTGTCTTATTTAAGGCA-GAACTTTGA
461169 TT
128 TT
461171 TTAAGGAAAA
Statistics
Matches: 792, Mismatches: 209, Indels: 153
0.69 0.18 0.13
Matches are distributed among these distances:
155 1 0.00
156 12 0.02
157 248 0.31
158 296 0.37
159 209 0.26
160 23 0.03
161 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (157 bp):
TTCTTACGAAACCAAAGCATCAAGATCTTGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAAT
CTTGAAAACAATGGAGATTGTTACTGCGATTCATGTTTGTCTTATTTAAGGCAGAACTTTGATTC
TATCAAAAATGATGGAAAGAAATGCTT
Found at i:463034 original size:476 final size:475
Alignment explanation
Indices: 461790--464116 Score: 2783
Period size: 476 Copynumber: 4.9 Consensus size: 475
461780 ACTGGGATTC
* *
461790 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTT-TTATGCCC-CATTTCCCTTA
1 TAGGATAAATGATATTGATGATTTT-TTTTCATGGAAATCTTTTCTT-TGCCCTTATTTTCCTTA
* * * * *
461853 AAATCAAAGTTCATCTCTTGAATATGACAAGCATCGATTCTTGTAACAATCTCCATTCCTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * * *
461918 GATTGGGAGCCAAAAACACATTCCATTCATTAAGATACACGACATTGACGCTTTGGTATCACAAG
129 GATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTAGG-ATCGCAAG
* *
461983 AAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTGCCTTTTAAATAAGACAAACATGA
193 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* *
462048 ATAGTCATACTAATCCCC-TTTTTTCTTGGGATTAGGCACCAT-AACTATAGTCTTCTCATAAGG
258 ATGGTCATACTAATCCCCATTCTTT-TTGGGATTAGGCACCATAAAC-ATAGTCTTCTCATAAGG
* * * * * * * *
462111 ATACACGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACAAATTTTTGT-AAAGTC
321 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTC
* * * * *
462175 TAAATTCTTTG-TTCAAATGAGCCAAAC-ATGGATTCTAGTATTGGTCAT-CATTCATTTTGTTA
386 T-ATTTC-GTGCCTCAAATGAGCCAAACAAT-GATTCTAGTATTGTTCATACATTCATTTTGTGA
* * * *
462237 TTTGGCACTAAAAACACATTCTCCTCAC
448 TTAGGCACTATAAACACATTATCCTCAT
* * * * *
462265 CAGGATAAAAGATATTGATGATTTTCTTTACATGGAAATGTTTTGC-TTGCCC-TATTTTCCTCA
1 TAGGATAAATGATATTGATGATTTT-TTTTCATGGAAATCTTTT-CTTTGCCCTTATTTTCCTTA
* * * *
462328 AAATCAAAGTTCATCCATTCAATAAGACAA-CAATTGATTCTCATAACAATCTCCATTCTTTTCA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * *** *
462392 AGATTAGGAACCAAAAACACTTTTCCATT-TTTAGGATACTTGACATTGATGCTTTAGCATCGCA
128 AGATTAGGACCCAAAAACAC-ATTCCATTCATTAGGATACACAACATTGATGC-TTAGGATCGCA
* *
462456 AGAAAAGCTTTTGC-TTCCACCGTTTTTGATAGAATGAAAGTTTGCCTCTTAAAAAAGACAAACA
191 AGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* * * * * * *
462520 TAAATGGTTATACTAATCCCCATTATTTTCGAGATTAGGCACTATAAACGTAGTCTTCTCATAAG
255 TGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* *
462585 GTTGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAACT
320 GATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGT
* ** * *
462650 CTATTTCGTGCCTTAAATGAGCCAAACAATGATTCTAGTATTGTTTTTGAC-TT-GTTTTATGAT
385 CTATTTCGTGCCTCAAATGAGCCAAACAATGATTCTAGTATTGTTCAT-ACATTCATTTTGTGAT
* * *
462713 TAGGCACTATGAAGACATTATCTTCAT
449 TAGGCACTATAAACACATTATCCTCAT
****
462740 TAGGATAAATGATATTGATGATTTTTTTTCCATGGAAATCTTTTCTTTGCCCTTACGAGCCTTAA
1 TAGGATAAATGATATTGATGATTTTTTTT-CATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAA
* * * * * *
462805 AATCAAAGTTCACCCCTTAAATAAAATAGGTATCAATTCTCGTAACAATCTCCATTCTTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* *
462870 ATTTGGACCCAAAAACACATTCCCTTCATTAGGATACACAACATTGATGACTTAGTGA-CGCAAG
130 ATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATG-CTTAG-GATCGCAAG
* *
462934 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAATATGA
193 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* ** * * * * *
462999 ATGGTCAAACTAATCCTAATTCTTTTTAGGATTAGGGAACATAAACATAGCCTTCTCATACGGAT
258 ATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* ** ** **
463064 GCATGAAATTGATGCTTCAGTACCTCAAGAAAGGCTTTCTTTTGA-CAAGTTATTATAAAAGTCT
323 GCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAA-TTATTATAAAAGTCT
*
463128 ATTTCGTGCCTCAAATGAGCCAAACAATGATTCTAGTATTGTT-ATACATTCGTTTTGTGATTAG
387 ATTTCGTGCCTCAAATGAGCCAAACAATGATTCTAGTATTGTTCATACATTCATTTTGTGATTAG
* * **
463192 ACACTATAAACACATTATACTTTT
452 GCACTATAAACACATTATCCTCAT
* * *
463216 TAGGATAAATGATATTGACGATTTTTCTTTTCATGGAAATCTTTTCTTTGTCCTTATTTTCTTTA
1 TAGGATAAATGATATTGATGA-TTTT-TTTTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTA
* ** *
463281 AAATCAAAGTTCATCCCTCAAATAAGACAAGCATTAATTCTCGTAACAATCTCCATTCTTTTTAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * *
463346 GGTTGGGACCCAAAAACACATTCCCTTTATTAGGATACACAACATTGACGCTTTAGTG-TTGCAA
129 GATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGC-TTAG-GATCGCAA
* *
463410 GAAAAGCTTTTCTTTCCACCATTCTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
192 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * ** *
463475 AATGGTCATACTAATCCCCATTCTTTTCGGGACTAGGCACCATAAATGTAGTCTACTCATAAGGA
257 AATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* *
463540 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTCT
322 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
** * * * * *
463605 ATGCCCGTCCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TTCTTTCATTTTGTGATTT
387 AT-TTCGTGCCTCAAATGAGCCAAACAATGATTCTAGTATTGTTCATACATTCATTTTGTGATTA
* * *
463669 GGCCCTTTAAACACATTATCCTCTT
451 GGCACTATAAACACATTATCCTCAT
* *
463694 TATGATAAATGATATTGATGATTTTCTTTTCATGGGAATCTTTTCTTTG-CCTTATTTTCCTTAA
1 TAGGATAAATGATATTGATGATTTT-TTTTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAA
463758 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * *
463823 ATTAGGACCCAAAAACATATTCCTTTCATTAGGATACACAACATTGATGCTTTGGTATCGCAAGA
130 ATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTAGG-ATCGCAAGA
* * * *
463888 AAAGGTTTTCTTTCCACTGATTTTGATACAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
194 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * ** *
463953 TGGTCATACTAATCCCCTTTCTTTTCGGGATGAGGCACCATAAACATAATCTTCTCATAAATAAG
259 TGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATG
* ** * ** *
464018 CAAGATATTGATTTTTTGGCTTCTCAAGAAAAGG-TTTCTTCCCTCCAATTATTAT-AAAGTCCA
324 CATGATATTGATGCTTTGGTTTCTCAAG-AAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* **
464081 TGTTCGTGCCTCAAATTAGCCAAACAGGGATTCTAG
388 T-TTCGTGCCTCAAATGAGCCAAACAATGATTCTAG
464117 GATAAATGAT
Statistics
Matches: 1585, Mismatches: 233, Indels: 68
0.84 0.12 0.04
Matches are distributed among these distances:
474 10 0.01
475 460 0.29
476 668 0.42
477 349 0.22
478 98 0.06
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
TAGGATAAATGATATTGATGATTTTTTTTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
TTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTAGGATCGCAAGAAA
AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
GTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCA
TGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATTT
CGTGCCTCAAATGAGCCAAACAATGATTCTAGTATTGTTCATACATTCATTTTGTGATTAGGCAC
TATAAACACATTATCCTCAT
Found at i:463758 original size:953 final size:949
Alignment explanation
Indices: 461790--463967 Score: 2851
Period size: 953 Copynumber: 2.3 Consensus size: 949
461780 ACTGGGATTC
**
461790 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTT-TTATGCCCCATTTCCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTT-TGCCTTATTTCCCTTAA
* * * * *
461854 AATCAAAGTTCATCTCTTGAATATGACAAGCATCGATTCTTGTAACAATCTCCATTCCTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * *
461919 ATTGGGAGCCAAAAACACATTCCATTCATTAAGATACACGACATTGACGCTTTGGTATCACAAGA
130 ATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTTGGTATCGCAAGA
* *
461984 AAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* ** * * * *
462049 TAGTCATACTAATCCCCTTTTTTCTTGGGATTAGGCACCATAACTATAGTCTTCTCATAAGGATA
260 TGGTCATACTAATCCAATTCTTTCTTAGGATTAGGCAACATAACTATAGCCTTCTCATAAGGATA
** ** * *
462114 CACGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACAAATTTTTGTAAAGTCTAAA
325 CACGATAATGATGCTTCAGTACCTCAAGAAAGGCTTCCTTCCCACAAATTATTATAAAGTCTAAA
* * * * *
462179 TTCTTTGTTCAAATGAGCCAAACATGGATTCTAGTATTGGTCATCATTCATTTTGTTATTTGGCA
390 TTCTGTGCTCAAATGAGCCAAACATGGATTCTAGTATTGGTCATCATTCATTTTGTGATTAGACA
* * * *
462244 CTAAAAACACATTCTCCTCACCAGGATAAAAGATATTGATGATTTTCTTTACATGGAAATGTTTT
455 CTAAAAACACATTATACTCACCAGGATAAAAGATATTGACGATTTTCTTTACATGGAAATCTTTT
* *
462309 GCTTGCCCTATTTTCCTCAAAATCAAAGTTCATCCATTCAATAAGACAACAATTGATTCTCATAA
520 GCTTGCCCTATTTTCCTCAAAATCAAAGTTCATCCACTCAATAAGACAACAATTAATTCTCATAA
* ***
462374 CAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACACTTTTCCATTTTTAGGATACTTGACATT
585 CAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACACTATTCCATTTTTAGGATACACAACATT
* * * *
462439 GATGCTTTAGCATCGCAAGAAAAGCTTTTGCTTCCACCGTTTTTGATAGAATGAAAGTTTGCCTC
650 GACGCTTTAGCATCGCAAGAAAAGCTTTTGCTTCCACCATTCTTGATAGAATCAAAGTTTGCCTC
* * *
462504 TTAAAAAAGACAAACATAAATGGTTATACTAATCCCCATTATTTTCGAGATTAGGCACTATAAAC
715 TTAAAAAAGACAAACATAAATGGTCATACTAATCCCCATTATTTTCGAGACTAGGCACCATAAAC
* * *
462569 GTAGTCTTCTCATAAGGTTGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGAC
780 GTAGTCTACTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGAC
** * * * *
462634 CAATTATTATAAAACTCTATTTCGTGCCTTAAATGAGCCAAACAATGATTCTAGTATTGTTTTTG
845 CAATTATTATAAAACTCTATCCCGTCCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTT-
* * * *
462699 ACTTGTTTTATGATTAGGCACTATGAAGACATTATCTTCAT
909 ACTTATTTTATGATTAGGCACTATAAACACATTATCCTCAT
****
462740 TAGGATAAATGATATTGATGATTTT-TTTTCCATGGAAATCTTTTCTTTGCCCTTACGAGCCTTA
1 TAGGATAAATGATATTGATGATTTTCTTTT-CATGGAAATCTTTTCTTTG-CCTTATTTCCCTTA
* * * * * *
462804 AAATCAAAGTTCACCCCTTAAATAAAATAGGTATCAATTCTCGTAACAATCTCCATTCTTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * *
462869 GATTTGGACCCAAAAACACATTCCCTTCATTAGGATACACAACATTGATGAC-TTAGTGA-CGCA
129 GATTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATG-CTTTGGT-ATCGCA
* *
462932 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAATAT
192 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * *
462997 GAATGGTCAAACTAATCCTAATTCTTT-TTAGGATTAGGGAACATAAAC-ATAGCCTTCTCATAC
257 GAATGGTCATACTAATCC-AATTCTTTCTTAGGATTAGGCAACAT-AACTATAGCCTTCTCATAA
* * * *** *
463060 GGATGCATGA-AATTGATGCTTCAGTACCTCAAGAAAGGCTTTCTTTTGACAAGTTATTATAAAA
320 GGATACACGATAA-TGATGCTTCAGTACCTCAAGAAAGGCTTCCTTCCCACAAATTATTAT-AAA
* * *
463124 GTCT-ATTTC-GTGCCTCAAATGAGCCAAACAAT-GATTCTAGTATT-GTTATACATTCGTTTTG
383 GTCTAAATTCTGTG-CTCAAATGAGCCAAAC-ATGGATTCTAGTATTGGTCAT-CATTCATTTTG
* **** * *
463185 TGATTAGACACTATAAACACATTATACTTTTTAGGATAAATGATATTGACGATTTTTCTTTTCAT
445 TGATTAGACACTAAAAACACATTATACTCACCAGGATAAAAGATATTGACGA-TTTTCTTTACAT
* * *
463250 GGAAATCTTTT-CTTTGTCCTTATTTTCTTTAAAATCAAAGTTCATCC-CTCAAATAAGACAAGC
509 GGAAATCTTTTGC-TTG-CCCTATTTTCCTCAAAATCAAAGTTCATCCACTC-AATAAGACAA-C
* * * * * *
463313 -ATTAATTCTCGTAACAATCTCCATTCTTTTTAAGGTTGGGACCCAAAAACAC-ATTCCCTTTAT
570 AATTAATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGAACCAAAAACACTATTCCATTT-T
** *
463376 TAGGATACACAACATTGACGCTTTAGTGTTGCAAGAAAAGCTTTT-CTTTCCACCATTCTTGATA
634 TAGGATACACAACATTGACGCTTTAGCATCGCAAGAAAAGCTTTTGC-TTCCACCATTCTTGATA
* * * *
463440 GAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGG
698 GAATCAAAGTTTGCCTCTTAAAAAAGACAAACATAAATGGTCATACTAATCCCCATTATTTTCGA
*
463505 GACTAGGCACCATAAATGTAGTCTACTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG
763 GACTAGGCACCATAAACGTAGTCTACTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG
* *
463570 AAAGGCTTTCTTCTGACCAATTATTATAAAAGTCTATGCCCGTCCCTCAAATGAGCCAAACAAGG
828 AAAGGCTTTCTTCCGACCAATTATTATAAAACTCTAT-CCCGTCCCTCAAATGAGCCAAACAAGG
* * * * *
463635 ATTCTAGTATTGTTCTT-CTTTCATTTTGTGATTTGGCCCTTTAAACACATTATCCTCTT
892 ATTCTAGTATTGTTCTTAC-TT-ATTTTATGATTAGGCACTATAAACACATTATCCTCAT
* * *
463694 TATGATAAATGATATTGATGATTTTCTTTTCATGGGAATCTTTTCTTTGCCTTATTTTCCTTAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCTTATTTCCCTTAAA
463759 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
* *
463824 TTAGGACCCAAAAACATATTCCTTTCATTAGGATACACAACATTGATGCTTTGGTATCGCAAGAA
131 TTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTTGGTATCGCAAGAA
* * * *
463889 AAGGTTTTCTTTCCACTGATTTTGATACAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
196 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
463954 GGTCATACTAATCC
261 GGTCATACTAATCC
463968 CCTTTCTTTT
Statistics
Matches: 1059, Mismatches: 144, Indels: 47
0.85 0.12 0.04
Matches are distributed among these distances:
949 4 0.00
950 49 0.05
951 345 0.33
952 56 0.05
953 492 0.46
954 109 0.10
955 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (949 bp):
TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCTTATTTCCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
TTAGGACCCAAAAACACATTCCATTCATTAGGATACACAACATTGATGCTTTGGTATCGCAAGAA
AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
GGTCATACTAATCCAATTCTTTCTTAGGATTAGGCAACATAACTATAGCCTTCTCATAAGGATAC
ACGATAATGATGCTTCAGTACCTCAAGAAAGGCTTCCTTCCCACAAATTATTATAAAGTCTAAAT
TCTGTGCTCAAATGAGCCAAACATGGATTCTAGTATTGGTCATCATTCATTTTGTGATTAGACAC
TAAAAACACATTATACTCACCAGGATAAAAGATATTGACGATTTTCTTTACATGGAAATCTTTTG
CTTGCCCTATTTTCCTCAAAATCAAAGTTCATCCACTCAATAAGACAACAATTAATTCTCATAAC
AATCTCCATTCTTTTCAAGATTAGGAACCAAAAACACTATTCCATTTTTAGGATACACAACATTG
ACGCTTTAGCATCGCAAGAAAAGCTTTTGCTTCCACCATTCTTGATAGAATCAAAGTTTGCCTCT
TAAAAAAGACAAACATAAATGGTCATACTAATCCCCATTATTTTCGAGACTAGGCACCATAAACG
TAGTCTACTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACC
AATTATTATAAAACTCTATCCCGTCCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTAC
TTATTTTATGATTAGGCACTATAAACACATTATCCTCAT
Found at i:466061 original size:476 final size:474
Alignment explanation
Indices: 464235--466866 Score: 3062
Period size: 476 Copynumber: 5.6 Consensus size: 474
464225 ATCTCCATTC
* * * * *
464235 TAGGATACACGACATTGATTCCTTGCTGTCACAAGAAAAGCTTTTCATTT-CACCGTTTTAGATA
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATA
* * * * * * *
464299 AAATCCAAGCTTGCCTCTTAAATAAGACAAACATGAATTGTCATGCTAATCCCCATTCTTCTTGG
65 GAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTT-TTCG
* * * * *
464364 GATTAGGCACCACAAGCGTAGTCTTCTCATAAGGATACACGATAATGATGCTTTGGTTTCTCATG
129 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG
* * ** * * * *
464429 AAAGGCTTCCTTCCCACCAATTTTTGTAAAGTTTAAATTCTTGCCTCAAATGAGCCAAACATGGA
194 AAAGGCTTTCTTCCCACCAATTATTAAAAAGTCTATATTCGTGCCTCAAATGAGCCAAACAAGGA
* * * * * *
464494 TTCTACTATTGATCATCATTCATTTTGTTATTAGGCACTAAAAACACATTTTCCTTATTAGGATA
259 TTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATA
* * * * * *
464559 AAAGTTATTTATGATTTTCTTTGCATGGAAATGTTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
324 AATGATATTGATGATTTTCTTTGCTTGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
* ** * * *
464624 TTCATCCCTTGAATAAGACAATTATCGATTCTCATAACAA-TCTCTATTCTTTTCAAGATTAGGA
389 TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTC-ATTCTTTTCAAGATTGGGA
* * * *
464688 ACCAAAAACACATCCCCATCTT
453 CCCAAAAACACATTCCCTTCAT
** * **
464710 TAGGATACTTGCCATTGATGCCCTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* * * ** * * *
464775 AATCAAAGGTTGCCTCTTAAATAAGACAAACTTGAATTGTCACGCTAATCCCCATTCTACTTGGG
66 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCT-TTTCGG
* * * *
464840 ATTAGGCACTATAAGCGTAGTCTTCTCATAAGGATACACGATAATGATGCTTTGGTTTCTCAAGA
130 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGA
* * ** * *
464905 AAGGCTTCCTTCCCACCAATTTTTGTAAAGTCTAAATTC-TCGCCTCAAATGAGCCAAACATGGA
195 AAGGCTTTCTTCCCACCAATTATTAAAAAGTCTATATTCGT-GCCTCAAATGAGCCAAACAAGGA
* *
464969 TTCTAGTATTGAT-TATCATTCATTTTGGGATTTGGCACTATAAACACATTATCCTCATTAGGAT
259 TTCTAGTATTGATCT-TCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGAT
* *
465033 AAATGATATT-ATGATTTTCTTT-TTATGGAAATCTTTTCCTTGCCCTATTTTCCTT-AAATCAA
323 AAATGATATTGATGATTTTCTTTGCT-TGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATC-A
* * * * * * *
465095 AAGTTCATCCCCTAAAAAATACAAGCATCAATTCTTGTAACAATCTCCATTCTTTTCAAGATT-G
386 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTCATTCTTTTCAAGATTGG
*
465159 GACCCAAAAATACATTCCCTTCAT
451 GACCCAAAAACACATTCCCTTCAT
** * * * * *
465183 TAGGATACACGACATTGACACCTTGGCGTAGTAAGAAAAGCTTTTCTTTCCAACGTTTTTGAT--
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* *
465246 --TCAAAAGTTTGCCTCTTAAATAAGACAAATATCAATGGTCATACTAAT---C-C-C-TTTCGA
66 AATC-AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTTTTCG-
* * * * * *
465303 GATTAGGCACCATAAACGTAGTCATCTTATAAGGATCCATGATATTGATGCTTTGGGTTCTCAAA
129 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG
* * * * * *
465368 AAAGGCTTTCTTCCGACCGATTATTATAAAGTCTATGTTCGTTCCTAAAATGAGCCAAACAAGGA
194 AAAGGCTTTCTTCCCACCAATTATTAAAAAGTCTATATTCGTGCCTCAAATGAGCCAAACAAGGA
* * ** * * *
465433 TTCTAGCATTGTTCTTCATTTGTTTTGTGATTTGGCACTATAAACAAAATATCCTCATTAGGATA
259 TTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATA
* * * ** ** * *
465498 ATTGATATTGATGATTTTTTTTTCATTG-AAATCTTTTTTTTGCATTTATTTTTCTTTAAATCAA
324 AATGATATTGATGATTTTCTTTGC-TTGAAAATCTTTTCCTTGC-CCTATTTTCCTTAAAATCAA
*
465562 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATTTTCATTCTTTTCAAGATTGGG
387 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTCATTCTTTTCAAGATTGGG
* * * *
465627 ATCCAAAAATACGTTGCCTTCAT
452 ACCCAAAAACACATTCCCTTCAT
* * * * * *
465650 TAGGATGCATGACATTGATACTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAT
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
*
465715 AATCAAAGTTTGCCAT-TTAAATAAGACAAACATGAATGGTCATACTAATCCTCACTCTTTTCAG
66 AATCAAAGTTTGCC-TCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTTTTC-G
*
465779 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGATTTCTCAAG
129 GATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG
* * * * *
465844 AAGGGCTTTCTTCCGACCAATTGTTACAAAAGTCTATGTTTGTGCCTCAAATGAGCCAAACAAGG
194 AAAGGCTTTCTTCCCACCAATTATTA-AAAAGTCTATATTCGTGCCTCAAATGAGCCAAACAAGG
* **
465909 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTATCCTCAAAAGGAT
258 ATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGAT
* * * *
465974 AAATGATATTGATGATTTTCTTTACTTGAAAATGC-TTTCCTTACCCTATTTT-CTGAAAAAGCA
323 AAATGATATTGATGATTTTCTTTGCTTGAAAAT-CTTTTCCTTGCCCTATTTTCCT-TAAAATCA
* * * * * *
466037 AGGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTTTTTTCAAAATTGG
386 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTCATTCTTTTCAAGATTGG
* **
466102 GACCCAAAAACACTTTCCCTTTTT
451 GACCCAAAAACACATTCCCTTCAT
* * *
466126 TAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACTGTTTTTAATAG
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* * * *
466191 AATCAATGTTTGCCTTTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTATTTCTAGG
66 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTTT-TCGG
* * *
466256 ACTACGCACCGTAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGA
130 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGA
* *** ** *
466321 AAGGCTTTCTTCCGACCAATTATTATAAAAGTCTACGCTCAAGCCTCAAATGAGACAAACAAGGA
195 AAGGCTTTCTTCCCACCAATTATTA-AAAAGTCTATATTCGTGCCTCAAATGAGCCAAACAAGGA
* * *
466386 TTCTAGTATTGTTCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTATCCTCTTTAGGATA
259 TTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATA
* *
466451 AATGATATTGATGATTTTCTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCCTTAAAATCAAA
324 AATGATATTGATGATTTTCTTTGCTTGAAAATCTTTTCCTTGCCCTA-TTTTCCTTAAAATC-AA
* * * *
466516 AGTTCATCCCCTAAAAAAGATAAGCATCGATTCTCGTAACAA-TCTCTATTCTTTTCAAGATTGG
387 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTC-ATTCTTTTCAAGATTGG
*
466580 GACCCAAAAACATATTCCCTTCAT
451 GACCCAAAAACACATTCCCTTCAT
* * * * ** *
466604 TAGGATACAGGACATTGATGCTTTGGTGTTGCAAGAAAATCTTTTATTTCCATTGTTTTTAATAG
1 TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* * * * * *
466669 AATCAAAGTTTGCCTCTTACATAAGACAAACATCAAAGGTCATACCAATCCCCATTATTTTCGAG
66 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTTTTCG-G
* ** *
466734 ATGAGGCACCATAAACGTAGTCTTCTTGTAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGA
130 ATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGA
* * * * *
466799 AAGGGTTTCTTCCCACCAATTATT-ATAAGCTCTATATTCGTGCCTTAAATGAGCCAAATAGGGA
195 AAGGCTTTCTTCCCACCAATTATTAAAAAG-TCTATATTCGTGCCTCAAATGAGCCAAACAAGGA
466863 TTCT
259 TTCT
466867 TGGATAAATG
Statistics
Matches: 1859, Mismatches: 256, Indels: 82
0.85 0.12 0.04
Matches are distributed among these distances:
463 3 0.00
464 173 0.09
465 27 0.01
466 67 0.04
467 82 0.04
469 2 0.00
470 79 0.04
471 3 0.00
473 79 0.04
474 96 0.05
475 303 0.16
476 509 0.27
477 164 0.09
478 272 0.15
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
TAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCACTCTTTTCGGA
TTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAA
AGGCTTTCTTCCCACCAATTATTAAAAAGTCTATATTCGTGCCTCAAATGAGCCAAACAAGGATT
CTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
TGATATTGATGATTTTCTTTGCTTGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTT
CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATTTTCATTCTTTTCAAGATTGGGACCC
AAAAACACATTCCCTTCAT
Found at i:467714 original size:904 final size:897
Alignment explanation
Indices: 465970--468708 Score: 2507
Period size: 948 Copynumber: 3.0 Consensus size: 897
465960 ATCCTCAAAA
*
465970 GGATAAATGATATTGATGATTTTCTTTACTTGAAAATGCTTTCCTTACCCTATTTTCTGAAAAAG
1 GGATAAATGATATTGATGATTTTCTTTACATGAAAATGCTTTCCTTACCCTATTTTCTGAAAAAG
* * * *
466035 CAAGGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTTTTTTCAAAATT
66 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAAATT
** * * **
466100 GGGACCCAAAAACACTTTCCCTTTTTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAA
131 GGGACCCAAAAACAAATT-CCTTTTTTAGGATACACGACATTAAAGCTTTGGTGTCACAAGAAAA
* * * * * *
466165 GCTTTTCTTTCCACTGTTTTTAATAGAATCAATGTTTGCCTTTTAAATAAGACAAACATGAATGG
195 GCTTTTCATTCCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAG
* *
466230 TCATACTAATCCCCACTATTTCTAGGACTACGCACCGTAAACGTAGTCTTCTCATAAGGATGCAT
260 TCATACTAATCCCCACTATTTCTAGGACTACGCACCATAAACGTAGTCTTCTCATAAGGATGCAA
466295 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTACGCT
325 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTACGCT
* * *
466360 CAAGCCTCAAATGAGACAAACAAGGATTCTAGTATTGTTCTTCTTTCATTTTGTGATTAGGCACT
390 CAAGCCTCAAATGAGACAAACAAGGATTCTAGCATTGTTCTTCATTCATTTGGTGATTAGGCACT
* * * *
466425 ATAAACACATTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTGCATGAAAATCTTTTCT
455 ATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTGCATGAAAATCTTTTCT
* *
466490 TTGCCCTATTTTTCCTTAAAATCAAAAGTTCATCCCCTAAAAAAGATAAGCATCGATTCTCGTAA
520 TTGCCCTATTTTTCCTTAAAATCAAAAGTTCATCCCCTAAAAAAGACAAGCATCGATTCTCATAA
* *
466555 CAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACATATTCCCTTCATTAGGATACAGGACATT
585 CAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAGGACATT
** * * *
466620 GATGCTTTGGTGTTGCAAGAAAATCTTTTATTTCCATTGTTTTTAATAGAATCAAAGTTTGCCTC
650 GACACTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTAATAGAATCAAAGTTTGCCTC
* * *
466685 TTACATAAGACAAACATCAAAGGTCATACCAATCCCCATTATTTTCGAGATGAGGCACCATAAAC
715 TTAAATAAGACAAACATCAAAGGCCATACCAATCCCCATTATTTTCGAGATGAAGCACCATAAAC
** * * *
466750 GTAGTCTTCTTGTAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGGTTTCTTCCCAC
780 GTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAAC
* *
466815 CAATTATTAT-AAGCTCTATATTCGTGCCTTAAATGAGCCAAATAGGGATTCTT
845 CAAGTATTATAAAG-TCTATATTCGTGCCTCAAATGAGCCAAATAGGGATTCTT
* * * * * * *
466868 GGATAAATGTTATTGATGATTTTCTTTTCATGGAAAT-CATTT-TTGTGCCCTATTTTCCT-TAC
1 GGATAAATGATATTGATGATTTTCTTTACATGAAAATGC-TTTCCT-TACCCTATTTT-CTGAAA
* * *
466930 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAAGAATCTCCATTCTTTTCAAG
63 AAGCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAA
* *
466995 ATTGGGACCCAAAAACAAATT-CTTTTCATTATGATACACGACATTAAAG-TTTGGTGTCACATG
128 ATTGGGACCCAAAAACAAATTCCTTTT--TTAGGATACACGACATTAAAGCTTTGGTGTCACAAG
* * *
467058 AAAAGCTTTTCATTCCTCCGTTTTTGATAGAATCAAAGTTTG-CTGCTTAAGTAAAACAAACATG
191 AAAAGCTTTTCATTCCACCGTTTTTAATAGAATCAAAGTTTGCCT-CTTAAATAAAACAAACATG
* * * * * *
467122 AATAGTCATACTAATCCCTA-T-TCTTCTTGGGATTAGGCACTATAAGCGTAGTTTGTCTTCTCA
255 AATAGTCATACTAATCCCCACTAT-TTC-TAGGACTACGCACCATAAACGTA----GTCTTCTCA
* * *
467185 TAAGGATGCAAGATAATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATTA
314 TAAGGATGCAAGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
* * *** * *
467250 AAGTCTATGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTGGT
379 AAGTCTACGCTCAAGCCTCAAATGAGACAAACAAGGATTCTAGCATTGTTCTTCATTCATTTGGT
* *
467315 GTTTATGG-ACTATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTTCATT
444 GATTA-GGCACTATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTGCA-T
* * * * * **
467379 G-AAATCTTTTTTTTTTTTG-CATTTATTTTCCTTTAAATC-GAAGTTCATCCTTTAAAAAA-AG
507 GAAAATC----TTTTCTTTGCCCTAT-TTTTCCTTAAAATCAAAAGTTCATCCCCTAAAAAAGA-
* * *
467440 CAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTGCTTT
566 CAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTT
* * * *
467505 CATTAGGATACATGACATTGGCACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGA
631 CATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTAA
* * * * *
467570 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATGGCCATACTAATCCCCATTCTTTTC
696 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATCAAAGGCCATACCAATCCCCATTATTTTC
* * *
467635 GGGATTAAGCACCATAAACGTAGTCTTCTCATAAGGATGCATGGTAATGATGCTTTGGTTTCTCA
761 GAGATGAAGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCA
* * * * *
467700 ATAAAGGCTTTCTTCTAACCAAGTATTATAAAAGTCTATCTTCGTGCCTCAAATGAGCCAAACAA
826 AGAAAGGCTTTCTTCCAACCAAGTATTAT-AAAGTCTATATTCGTGCCTCAAATGAGCCAAATAG
*
467765 GAATTC-T
890 GGATTCTT
* * * * * * ** * *
467772 AG-T-ATTGTTCTTCATCCG-TTTTGTGATTAGGCACT-ATAAACACATTATCCTCTTTAGCATA
1 GGATAAATGATATTGAT--GATTTTCT--TTA--CA-TGA-AAATGC-TT-T-C-C-TTACCCT-
* ** * ** * **
467833 AATGATATTGATGAATTTCTTTTCA-CTGAAATCTTTTTTTTGCACTTATTTTCGTTTAA-ATCA
52 -AT--T-TT-CTGAA-------AAAGC--AAA----GTTCAT-CCCTTA------AATAAGA-C-
** * * * * ** *****
467896 AAGTTCATCCCTTAAATAAGACAAGCATCGATTATCGAAACAATCTCCATTCTTTTCAAGATTGG
90 AAG--CATCGATT--CT-CG-CAA-CA---A-TCTC----CATTCT-TTTCAAAAT------TGG
* ** * * * * *
467961 GACCCAAAAACACATTCCCTTTAGTAGCATACACAACATTGACGCTTTGGTGTCGCAAGAAAAGC
133 GACCCAAAAACAAATT-CCTTTTTTAGGATACACGACATTAAAGCTTTGGTGTCACAAGAAAAGC
* * * * * *
468026 TTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTT
197 TTTTCATTCCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGTC
* *
468091 ATACTAATCCCCATTCT-TTTC-GGGACTAGGCACCATAAACGTAGTCTTCTCATAA-G--G---
262 ATACTAATCCCCA--CTATTTCTAGGACTACGCACCATAAACGTAGTCTTCTCATAAGGATGCAA
* * ** * * *
468148 GATAATGATGCTTTGGTTTCTTAAGAATGGCTTTCTTCTAACCAATTACTAGAAAAGTCTATGCT
325 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTACGCT
** * * * * * * * *
468213 TGATCCTCAAATGGGCCAAACAAGGATTCTAGTATTGCTCTTCTTTCGTTTTGTGATTAGGCACT
390 CAAGCCTCAAATGAGACAAACAAGGATTCTAGCATTGTTCTTCATTCATTTGGTGATTAGGCACT
* * * *
468278 ATAAACACATTATCCTCATTAGGATAAATGATATTAGTGATTTTCTTTTCATGAAAATCTTTTCT
455 ATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTGCATGAAAATCTTTTCT
* * * * * * *
468343 TTGCCGT-TATTTTCCTCAAAATC-AGAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTA
520 TTGCCCTAT-TTTTCCTTAAAATCAAAAGTTCATCCCCTAAAAAAGACAAGCATCGATTCTCATA
* * * **
468406 ACAATGTCAATTCTTTTCAAGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACAACAT
584 ACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAGGACAT
** * * * * *
468471 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGCCT
649 TGACACTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTAATAGAATCAAAGTTTGCCT
* * * * * * * * * *
468536 TTTAAATAAGACTAACATGAATGGTCATACTAATCCCGATTCTTTTTGAGATGAGGCACCATAAA
714 CTTAAATAAGACAAACATCAAAGGCCATACCAATCCCCATTATTTTCGAGATGAAGCACCATAAA
* * * * **
468601 TGTAGTCTTCTTATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCCTTCTTCTGA
779 CGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAA
* * * * * *
468666 CTAATTATTATACAGTCCATGTTCGTGCCTAAAATGAGCCAAA
844 CCAAGTATTATAAAGTCTATATTCGTGCCTCAAATGAGCCAAA
468709 CAAGCATTCT
Statistics
Matches: 1516, Mismatches: 228, Indels: 145
0.80 0.12 0.08
Matches are distributed among these distances:
895 1 0.00
896 11 0.01
897 101 0.07
898 142 0.09
899 2 0.00
901 183 0.12
902 13 0.01
903 7 0.00
904 277 0.18
905 55 0.04
906 3 0.00
907 2 0.00
908 4 0.00
909 4 0.00
910 1 0.00
913 3 0.00
914 1 0.00
915 2 0.00
917 1 0.00
918 3 0.00
919 1 0.00
925 1 0.00
926 1 0.00
927 3 0.00
931 3 0.00
932 5 0.00
937 1 0.00
938 4 0.00
939 3 0.00
941 6 0.00
943 1 0.00
944 1 0.00
945 3 0.00
946 1 0.00
947 28 0.02
948 293 0.19
949 4 0.00
950 3 0.00
951 4 0.00
952 165 0.11
954 5 0.00
955 3 0.00
957 1 0.00
958 12 0.01
961 33 0.02
962 104 0.07
963 6 0.00
964 3 0.00
965 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (897 bp):
GGATAAATGATATTGATGATTTTCTTTACATGAAAATGCTTTCCTTACCCTATTTTCTGAAAAAG
CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTCAAAATT
GGGACCCAAAAACAAATTCCTTTTTTAGGATACACGACATTAAAGCTTTGGTGTCACAAGAAAAG
CTTTTCATTCCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGT
CATACTAATCCCCACTATTTCTAGGACTACGCACCATAAACGTAGTCTTCTCATAAGGATGCAAG
ATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTACGCTC
AAGCCTCAAATGAGACAAACAAGGATTCTAGCATTGTTCTTCATTCATTTGGTGATTAGGCACTA
TAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTGCATGAAAATCTTTTCTT
TGCCCTATTTTTCCTTAAAATCAAAAGTTCATCCCCTAAAAAAGACAAGCATCGATTCTCATAAC
AATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACAGGACATTG
ACACTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTAATAGAATCAAAGTTTGCCTCT
TAAATAAGACAAACATCAAAGGCCATACCAATCCCCATTATTTTCGAGATGAAGCACCATAAACG
TAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACC
AAGTATTATAAAGTCTATATTCGTGCCTCAAATGAGCCAAATAGGGATTCTT
Found at i:468057 original size:477 final size:473
Alignment explanation
Indices: 466868--469198 Score: 3008
Period size: 477 Copynumber: 4.9 Consensus size: 473
466858 AGGGATTCTT
* * * * *
466868 GGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCATTTTTGTGC-CCTATTTTCCTTACAA
1 GGATAAATGATATTGATGATTTTCTTTTCAT-GAAATCTTTTTTTTGCACTTATTTTCTTTA-AA
* *
466932 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAAGAATCTCCATTCTTTTCAAGAT
64 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAGAT
* * * * * * * *
466997 TGGGACCCAAAAACAAATTCTTTTCATTATGATACACGACATTAAAG-TTTGGTGTCACATGAAA
129 TGGGACCCAAAAACACATTCCTTT-ATTAGGATACACAACATTGACGCTTTGGTGTCGCAAGAAA
* * * *
467061 AGCTTTTCATTCCTCCGTTTTTGATAGAATCAAAGTTTG-CTGCTTAAGTAAAACAAACATGAAT
193 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCT-CTTAAATAAGACAAACATGAAT
* * * *
467125 AGTCATACTAATCCCTATTCTTCTT-GGGATTAGGCACTATAAGCGTAGTTTGTCTTCTCATAAG
257 GGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACGTA----GTCTTCTCATAAG
* * * *
467189 GATGCAAGATAATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATTAAAGT
317 GATGC-AGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGT
* * * *
467254 CTATGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTGGTGTTT
381 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATT
467319 ATGG-ACTATAAACACATTATCCTCATTA
446 A-GGCACTATAAACACATTATCCTCATTA
* * * *
467347 GAATAAATCATATTAATGATTTTCTTTTCATTGAAATCTTTTTTTTTTTTGCATTTATTTTCCTT
1 GGATAAATGATATTGATGATTTTCTTTTCA-TGAAATC----TTTTTTTTGCACTTATTTT-CTT
* * *
467412 TAAATCGAAGTTCATCCTTTAAA-AAAAGCAAGCATCGATTCTC-ATAACAATCTCCATTCTTTT
60 TAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGA-AACAATCTCCATTCTTTT
* * ** * *
467475 CAAGATTGGGATCCAAAAACACATTGCTTTCATTAGGATACATGACATTGGCACTTTGGTGTCGC
123 CAAGATTGGGACCCAAAAACACATTCCTTT-ATTAGGATACACAACATTGACGCTTTGGTGTCGC
* *
467540 AAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
187 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* *
467605 TGAATGGCCATACTAATCCCCATTCTTTTCGGGATTAAGCACCATAAACGTAGTCTTCTCATAAG
252 TGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAG
* * * *
467670 GATGCATGGTAATGATGCTTTGGTTTCTCAATAAAGGCTTTCTTCTAACCAAGTATTATAAAAGT
317 GATGCA-GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGT
* * *
467735 CTATCTTCGTGCCTCAAATGAGCCAAACAAGAATTCTAGTATTGTTCTTCATCCGTTTTGTGATT
381 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATT
*
467800 AGGCACTATAAACACATTATCCTCTTTA
446 AGGCACTATAAACACATTATCCTCATTA
* *
467828 GCATAAATGATATTGATGAATTTCTTTTCACTGAAATCTTTTTTTTGCACTTATTTTCGTTTAAA
1 GGATAAATGATATTGATGATTTTCTTTTCA-TGAAATCTTTTTTTTGCACTTATTTTC-TTTAAA
*
467893 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTATCGAAACAATCTCCATTCTTTTCAAGAT
64 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAGAT
* *
467958 TGGGACCCAAAAACACATTCCCTTTAGTAGCATACACAACATTGACGCTTTGGTGTCGCAAGAAA
129 TGGGACCCAAAAACACATT-CCTTTATTAGGATACACAACATTGACGCTTTGGTGTCGCAAGAAA
*
468023 AGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
193 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
* *
468088 GTTATACTAATCCCCATTCTTTTCGGGACTAGGCACCATAAACGTAGTCTTCTCATAA-G--G--
258 GTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * * * *
468148 GATAATGATGCTTTGGTTTCTTAAGAATGGCTTTCTTCTAACCAATTACTAGAAAAGTCTATGCT
323 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTCTATG-T
* * *
468213 T-GAT-CCTCAAATGGGCCAAACAAGGATTCTAGTATTGCTCTTCTTTCGTTTTGTGATTAGGCA
387 TCG-TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCA
468276 CTATAAACACATTATCCTCATTA
451 CTATAAACACATTATCCTCATTA
* **
468299 GGATAAATGATATT-AGTGATTTTCTTTTCATGAAAATCTTTTCTTTGC-CGTTATTTTCCTCAA
1 GGATAAATGATATTGA-TGATTTTCTTTTCATG-AAATCTTTTTTTTGCAC-TTATTTT-CTTTA
* * * * *
468362 AATCAGAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTAACAATGTCAATTCTTTTCAAG
62 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAG
* * *
468427 ATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACAACATTGATGCTTTGGTTTCGCAAGA
127 ATTGGGACCCAAAAACACATTC-CTTTATTAGGATACACAACATTGACGCTTTGGTGTCGCAAGA
* * *
468492 AAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGCCTTTTAAATAAGACTAACATGAA
191 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * *
468557 TGGTCATACTAATCCCGATTCTTTTTGAGATGAGGCACCATAAATGTAGTCTTCTTATAAGGATG
256 TGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATG
* * * * *
468622 CATGATATTGATGCTTTGGTTTCTCAAGAAAGGCCTTCTTCTGACTAATTATTAT-ACAGTCCAT
321 CA-GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTCTAT
* * * *
468686 GTTCGTGCCTAAAATGAGCCAAACAAGCATTCTAGAATTGTTCTTCATTCGTTTTATGATTAGGC
385 GTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGC
*
468751 ACTATAAACACAATATCCTCATTA
450 ACTATAAACACATTATCCTCATTA
* *
468775 GGATAAATGAAATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGTACTTATTTTTTCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCA-TGAAATCTTTTTTTTGCACTTA--TTTTCTTTAA
* * *
468840 ATCCAAGTTCATCCCATAAATAAGACAAGCATCGATTCTC-ATAACAATTTCCATTCTTTTCAAG
63 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGA-AACAATCTCCATTCTTTTCAAG
** * * * * * *
468904 ATTGGGTTCCAAAAATACATTGCCTTCATTAGGATACATGAA-AATGACACTTTGGTGCCGCAAG
127 ATTGGGACCCAAAAACACATT-CCTTTATTAGGATACA-CAACATTGACGCTTTGGTGTCGCAAG
* * *
468968 AAAAGCTTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGA
190 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * ** * *
469033 ATGGTCATACCAATCTCCACCCTTTTCAGGATCAGGCACCATAAACGTAGTCTTCTCATAAGGAT
255 ATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * * *
469098 GCAGGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCATCCGACCAATTGTTATAAAAGTCTA
320 GCA-GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTCTA
* *
469163 TGTTCATGCCTCAAATGAGCTAAACAAGGATTCTAG
384 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAG
469199 GATAAATGTT
Statistics
Matches: 1625, Mismatches: 185, Indels: 85
0.86 0.10 0.04
Matches are distributed among these distances:
470 5 0.00
471 411 0.25
472 5 0.00
474 2 0.00
475 3 0.00
476 128 0.08
477 571 0.35
478 53 0.03
479 32 0.02
480 4 0.00
481 183 0.11
483 11 0.01
484 102 0.06
485 113 0.07
486 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (473 bp):
GGATAAATGATATTGATGATTTTCTTTTCATGAAATCTTTTTTTTGCACTTATTTTCTTTAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGAAACAATCTCCATTCTTTTCAAGATTG
GGACCCAAAAACACATTCCTTTATTAGGATACACAACATTGACGCTTTGGTGTCGCAAGAAAAGC
TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
ATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAGAT
AATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTCTATGTTCGT
GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATA
AACACATTATCCTCATTA
Found at i:469033 original size:948 final size:945
Alignment explanation
Indices: 466868--469198 Score: 3088
Period size: 948 Copynumber: 2.4 Consensus size: 945
466858 AGGGATTCTT
* * * * * * *
466868 GGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCATTTTTGTGCCCTATTTTCCTTACAAT
1 GGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGACTTATTTTCTTTA-AAT
* *
466933 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAAGAATCTCCATTCTTTTCAAGATT
65 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-AAACAATCTCCATTCTTTTCAAGATT
* * * * * * * * *
466998 GGGACCCAAAAACAAATTCTTTTCATTATGATACACG-ACATTAAAGTTTGGTGTCACATGAAAA
129 GGGACCCAAAAACACATTC-CTTCATTAGGATACA-GAAAATGACACTTTGGTGTCGCAAGAAAA
* * * * *
467062 GCTTTTCATTCCTCCGTTTTTGATAGAATCAAAGTTTG-CTGCTTAAGTAAAACAAACATGAATA
192 GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCT-CTTAAATAAGACAAACATGAATG
* * *
467126 GTCATACTAATCCCTATTCTTCTT-GGGATTAGGCACTATAAGCGTAGTTTGTCTTCTCATAAGG
256 GTCATACTAATCCCCATTCTT-TTCGGGA-TAGGCACCATAAACGTA----GTCTTCTCATAAGG
*
467190 ATGCAAGATAATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATTAAAGTC
315 A-G---GATAATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATAAAAGTC
* *
467255 TATGTTTG-TGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTGGTGTTT
376 TATG-TTGATGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGCTCTTCATTCGTTTGGTGATT
467319 ATGGACTATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTTCATTGAAAT
440 ATGGACTATAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTTCATTGAAAT
* * ** *
467384 CTTTTTTTTTTTTGCATTTATTTTCCTTTAAATCGAAGTTCATCCTTTAAAAAAAGCAAGCATCG
505 C---TTTTTCTTTGCAGTTATTTTCCTCAAAATCGAAGTTCATCCCTTAAAAAAAGCAAGCATCG
* *
467449 ATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACATTGCTTTCATTAGGAT
567 ATTCTCATAACAATCTCAATTCTTTTCAAGATTGGGACCCAAAAACACATTGCTTTCATTAGGAT
** * * *
467514 ACATGACATTGGCACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAA
632 ACACAACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAA
* * *
467579 AGTTTGTCTCTTAAATAAGACAAACATGAATGGCCATACTAATCCCCATTCTTTTCGGGATTAAG
697 AGTTTGCCTCTTAAATAAGACAAACATGAATGGCCATACTAATCCCCATTCTTTTCGAGATGAAG
* * *
467644 CACCATAAACGTAGTCTTCTCATAAGGATGCATGGTAATGATGCTTTGGTTTCTCAATAAAGGCT
762 CACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCC
* *
467709 TTCTTCTAACCAAGTATTATAAAAGTCTATCTTCGTGCCTCAAATGAGCCAAACAAGAATTCTAG
827 TTCTTCTAACCAAGTATTATAAAAGTCCATCTTCGTGCCTAAAATGAGCCAAACAAGAATTCTAG
* * * *
467774 TATTGTTCTTCATCCGTTTTGTGATTAGGCACTATAAACACATTATCCTCTTTA
892 AATTGTTCTTCATCCGTTTTATGATTAGGCACTATAAACACAATATCCTCATTA
* * *
467828 GCATAAATGATATTGATGAATTTCTTTTCACTGAAATCTTTTTTTTGCACTTATTTTCGTTTAAA
1 GGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTG-ACTTATTTTC-TTTAAA
*
467893 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTATCGAAACAATCTCCATTCTTTTCAAGAT
64 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-AAACAATCTCCATTCTTTTCAAGAT
* * * * * *
467958 TGGGACCCAAAAACACATTCCCTTTAGTAGCATACACAACATTGACGCTTTGGTGTCGCAAGAAA
128 TGGGACCCAAAAACACATT-CCTTCATTAGGATACAGAA-AATGACACTTTGGTGTCGCAAGAAA
*
468023 AGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
191 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
*
468088 GTTATACTAATCCCCATTCTTTTCGGGACTAGGCACCATAAACGTAGTCTTCTCATAA-G-GGAT
256 GTCATACTAATCCCCATTCTTTTCGGGA-TAGGCACCATAAACGTAGTCTTCTCATAAGGAGGAT
* ** * *
468151 AATGATGCTTTGGTTTCTTAAGAATGGCTTTCTTCTAACCAATTACTAGAAAAGTCTATGCTTGA
320 AATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG-TTGA
* * * *
468216 T-CCTCAAATGGGCCAAACAAGGATTCTAGTATTGCTCTTCTTTCGTTTTGTGATTA-GGCACTA
384 TGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGCTCTTCATTCGTTTGGTGATTATGG-ACTA
* * *
468279 TAAACACATTATCCTCATTAGGATAAATGATATTAGTGATTTTCTTTTCA-TGAAAATC-TTTTC
448 TAAACACATTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTTCATTG-AAATCTTTTTC
* * * *
468342 TTTGCCGTTATTTTCCTCAAAATC-AGAGTTCATCCCTT-AAATAAGACTAGCATCGATTCTCGT
512 TTTGCAGTTATTTTCCTCAAAATCGA-AGTTCATCCCTTAAAAAAAG-CAAGCATCGATTCTCAT
*
468405 AACAATGTCAATTCTTTTCAAGATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACAAC
575 AACAATCTCAATTCTTTTCAAGATTGGGACCCAAAAACACATTGCT-TTCATTAGGATACACAAC
** *
468469 ATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGC
639 ATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGC
* * * * * *
468534 CTTTTAAATAAGACTAACATGAATGGTCATACTAATCCCGATTCTTTTTGAGATGAGGCACCATA
704 CTCTTAAATAAGACAAACATGAATGGCCATACTAATCCCCATTCTTTTCGAGATGAAGCACCATA
* * *
468599 AATGTAGTCTTCTTATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCCTTCTTCT
769 AACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCCTTCTTCT
* * * * * *
468664 GACTAATTATTAT-ACAGTCCATGTTCGTGCCTAAAATGAGCCAAACAAGCATTCTAGAATTGTT
834 AACCAAGTATTATAAAAGTCCATCTTCGTGCCTAAAATGAGCCAAACAAGAATTCTAGAATTGTT
*
468728 CTTCATTCGTTTTATGATTAGGCACTATAAACACAATATCCTCATTA
899 CTTCATCCGTTTTATGATTAGGCACTATAAACACAATATCCTCATTA
*
468775 GGATAAATGAAATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGTACTTATTTTTTCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTG-ACTTA--TTTTCTTTAA
* * *
468840 ATCCAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAATTTCCATTCTTTTCAAGA
63 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA-AACAATCTCCATTCTTTTCAAGA
** * *
468905 TTGGGTTCCAAAAATACATTGCCTTCATTAGGATACATGAAAATGACACTTTGGTGCCGCAAGAA
127 TTGGGACCCAAAAACACATT-CCTTCATTAGGATACA-GAAAATGACACTTTGGTGTCGCAAGAA
* * *
468970 AAGCTTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAAT
190 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
* * ** *
469035 GGTCATACCAATCTCCACCCTTTTCAGGATCAGGCACCATAAACGTAGTCTTCTCATAAGGATGC
255 GGTCATACTAATCCCCATTCTTTTCGGGAT-AGGCACCATAAACGTAGTCTTCTCATAA-G--G-
* * *
469100 AGGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCATCCGACCAATTGTTATAAAAGTCTATG
315 AGGATAATGATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
* *
469165 TTCATGCCTCAAATGAGCTAAACAAGGATTCTAG
380 TTGATGCCTCAAATGAGCCAAACAAGGATTCTAG
469199 GATAAATGTT
Statistics
Matches: 1202, Mismatches: 144, Indels: 56
0.86 0.10 0.04
Matches are distributed among these distances:
947 147 0.12
948 517 0.43
949 7 0.01
951 4 0.00
952 166 0.14
953 5 0.00
954 82 0.07
955 1 0.00
957 1 0.00
958 12 0.01
960 40 0.03
961 103 0.09
962 115 0.10
963 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (945 bp):
GGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGACTTATTTTCTTTAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAACAATCTCCATTCTTTTCAAGATTGG
GACCCAAAAACACATTCCTTCATTAGGATACAGAAAATGACACTTTGGTGTCGCAAGAAAAGCTT
TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCAT
ACTAATCCCCATTCTTTTCGGGATAGGCACCATAAACGTAGTCTTCTCATAAGGAGGATAATGAT
GCTTTGGTTTCTTAAGAAGGGCTTTCTTCCGACCAATTATTATAAAAGTCTATGTTGATGCCTCA
AATGAGCCAAACAAGGATTCTAGCATTGCTCTTCATTCGTTTGGTGATTATGGACTATAAACACA
TTATCCTCATTAGAATAAATCATATTAATGATTTTCTTTTCATTGAAATCTTTTTCTTTGCAGTT
ATTTTCCTCAAAATCGAAGTTCATCCCTTAAAAAAAGCAAGCATCGATTCTCATAACAATCTCAA
TTCTTTTCAAGATTGGGACCCAAAAACACATTGCTTTCATTAGGATACACAACATTGACACTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAG
ACAAACATGAATGGCCATACTAATCCCCATTCTTTTCGAGATGAAGCACCATAAACGTAGTCTTC
TCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCCTTCTTCTAACCAAGTATTA
TAAAAGTCCATCTTCGTGCCTAAAATGAGCCAAACAAGAATTCTAGAATTGTTCTTCATCCGTTT
TATGATTAGGCACTATAAACACAATATCCTCATTA
Found at i:469596 original size:420 final size:419
Alignment explanation
Indices: 468773--470041 Score: 1812
Period size: 420 Copynumber: 3.0 Consensus size: 419
468763 ATATCCTCAT
** * * *
468773 TAGGATAAATGAAATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGTACTTATTTTTTCTT-
1 TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATC--TTTTTTGTCCTTA-TTTTCCTTA
* * * *
468837 TAAATCCAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAATTTCCATTCTTTTCA
63 T-AATCAAAGTTCATCCCTTAAATAAGACAAGCACCGATTCTCATAACAATCTCCATTCTTTTCA
* * *
468902 AGATTGGGTTCCAAAAATACATTGCCTTCATTAGGATACATGAAAATGACACTTTGGTGCCGCAA
127 AGATTGGGATCCAAAAATACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAA
468967 GAAAAGCTTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATG
192 GAAAAGC-TTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATG
* *
469032 AATGGTCATACCAATCTCCACCCTTTTCAGGATCAGGCACCATAAACGTAGTCTTCTCATAAGGA
256 AATGGTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* *
469097 TGCAGGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCATCCGACCAATTGTTATAAAAGTCT
321 TGCAAGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTTATCCGACCAATTGTTATAAAAGTCT
469162 ATGTTCATGCCTCAAATGAGCTAAACAAGGATTC
386 ATGTTCATGCCTCAAATGAGCTAAACAAGGATTC
*
469196 TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCGTTTTTGTCCCTTATTTTCCTTATA
1 TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCTTTTTTGT-CCTTATTTTCCTTATA
* *
469261 ATCAAAGTTCATCCTTTAAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
65 ATCAAAGTTCATCCCTTAAATAAGACAAGCACCGATTCTCATAACAATCTCCATTCTTTTCAAGA
* *
469326 ATGGGATCCAAAAAGACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAAGAA
130 TTGGGATCCAAAAATACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAAGAA
* *
469391 AAGCTTTTTTTCCTCTGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAATG
195 AAGCTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAATG
*
469456 GTCATACTAATCTCCACCCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
260 GTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
*
469521 AGATAATGATGCTTTAGTTTCTCAAGAAGGGCTTTTATCCGACCAATTGTTATAAAAGTCTATGT
325 AGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTTATCCGACCAATTGTTATAAAAGTCTATGT
*
469586 TCATGCCTCAAATGAGCTAAACAGGGATTC
390 TCATGCCTCAAATGAGCTAAACAAGGATTC
* * * *
469616 TAGGATAAATGTTATTGACGATTTTCTTTTGATGGACATCTTTTTTGTGCCTTATCTTCCTTATA
1 TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCTTTTTTGT-CCTTATTTTCCTTATA
* * *
469681 ATCAAAGTTCATCCCTTAAATAAGATAAACACC-ATTCTCATAAGAATCTCCATTCTTTTCAAGA
65 ATCAAAGTTCATCCCTTAAATAAGACAAGCACCGATTCTCATAACAATCTCCATTCTTTTCAAGA
* * * * * *
469745 TTGGGACCCAAAAATACATTCCCTTCATTATGATACATGACATTGA-AGTTTGGTGTCACAAGAA
130 TTGGGATCCAAAAATACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAAGAA
* * * * * ** *
469809 AAGCTTTTCATTCCACCATTTTTTATAGAAACAAAGTTTGCCGCTTAAGTAAGACAAACATGAAT
195 AAGCTTTT-TTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAAT
* * ** * * *
469874 AGTTATACTAATC-CCTATTCTTCTT-GGGATTAGGCACTATAAGCGTAGTTTGTCTTCTCATAA
259 GGTCATACTAATCTCC-ACCCTT-TTCAGGATTAGGCACCATAAACGTA----GTCTTCTCATAA
* * *
469937 GGATGCATGATAATGATGCTTTGGTTTCTCAAGAAGGCCTTTCT-TCCGACCAATTATTATAAAA
318 GGATGCAAGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTT-TATCCGACCAATTGTTATAAAA
* * * *
470001 GTATATGTTCGTGCCTCAAATGAGCCAAACAACGATTC
382 GTCTATGTTCATGCCTCAAATGAGCTAAACAAGGATTC
470039 TAG
1 TAG
470042 CATTGTTTTT
Statistics
Matches: 764, Mismatches: 72, Indels: 20
0.89 0.08 0.02
Matches are distributed among these distances:
418 25 0.03
419 149 0.20
420 303 0.40
421 138 0.18
422 5 0.01
423 143 0.19
424 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (419 bp):
TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCTTTTTTGTCCTTATTTTCCTTATAA
TCAAAGTTCATCCCTTAAATAAGACAAGCACCGATTCTCATAACAATCTCCATTCTTTTCAAGAT
TGGGATCCAAAAATACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAAGAAA
AGCTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAATGG
TCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAA
GATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTTATCCGACCAATTGTTATAAAAGTCTATGTT
CATGCCTCAAATGAGCTAAACAAGGATTC
Found at i:470982 original size:900 final size:899
Alignment explanation
Indices: 469196--471418 Score: 3474
Period size: 900 Copynumber: 2.5 Consensus size: 899
469186 ACAAGGATTC
* * * * * *
469196 TAGGATAAATGTTATTGATGATTTTCTTTTCATGGAAATCGTTTTTGT-CCCTTATTTTCC-TTA
1 TAGGATAAATGATATTGATGATTTTATTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
* * *
469259 TAATCAAAGTTCATCCTTTAAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTCTTTTCAA
66 -AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAA
* * * * *
469324 GAATGGGATCCAAAAAGACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGCCGCAAG
130 CATTGGGATCCAAAAACACATTGCCTTCATTAGGATACATGACATTGGCACTTTGGTGTCGCAAG
* * *
469389 AAAAGCTTTTTTTCCTCTGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAGACAAACATGAA
195 AAAAGCTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * *** * * *
469454 TGGTCATACTAATCTCCACCCTTTTCAAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATG
260 CGGTCATACTAATCCCCGTTCATTTCGAGATTAAGCACCATAAACGTAGTCTTCTCATAAGGATG
* * * * * *
469519 CAAGATAATGATGCTTTAGTTTCTCAAGAAGGGCTTT-TATCCGACCAATTGTTATAAAAGTCTA
325 CATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTA-CCAACCAATTATTATAAAAGTCTA
** * *
469583 TGTTCATGCCTCAAATGAGCTAAACAGGGATTCTAGGATAAATGTTATTGACGATTTTCTTTTGA
389 TGTTTGTGCCTCAAATGAGCCAAACAGGGATTCTAGGATAAATGTTATTGACGATTTTCTTTTCA
* * * * *
469648 TGGACATCTTTTTTGTGCCTTATCTTCCTTATAATCAAAGTTCATCCCTTAAATAAGATAAACAC
454 TGGAAATCTTTTTTGTGCCTTATCTTCCTTATAATCAAAGTTCACCCCTTAAAAAAAACAAACAC
* *
469713 CATTCTCATAAGAATCTCCATTCTTTTCAAGATTGGGACCCAAAAATACATTCCCTTCATTATGA
519 CATTCTCATAAGAATCTCCACTCTTTTCAAGATTAGGACCCAAAAATACATTCCCTTCATTATGA
* * *
469778 TACATGACATTGAAGTTTGGTGTCACAAGAAAAGCTTTTCATTCCACCATTTTTTATAGAAACAA
584 TACACGACATTGAAGTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCATTTTTGATAGAAACAA
* *
469843 AGTTTGCCGCTTAAGTAAGACAAACATGAATAGTTATACTAATCCCTATTCTTCTTGGGATTAGG
649 AGTTTGCCGCTTAAGTAAGACAAACATCAATAGTTATACTAATCCCTATTCTTCTTGGGATTACG
*
469908 CACTATAAGCGTAGTTTGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAG
714 CACTATAAGCATAGTTTGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAG
469973 GCCTTTCTTCCGACCAATTATTATAAAAGTATATGTTCGTGCCTCAAATGAGCCAAACAACGATT
779 GCCTTTCTTCCGACCAATTATTATAAAAGTATATGTTCGTGCCTCAAATGAGCCAAACAACGATT
* *
470038 CTAGCATTGTTTTTCATTCATTTGGTGTTTAGGCACTATAAACACATTATCCTCAT
844 CTAGCATTGTTCTTCATTCATTTGGTCTTTAGGCACTATAAACACATTATCCTCAT
470094 TAGGATAAATGATATTGATGATTTTATTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
1 TAGGATAAATGATATTGATGATTTTATTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
* * *
470159 AATCAAAGTTCATCCCTTAAATAAAACAAGCATAGATTCTCATAACAATCTCCTTTCTTTTCAAC
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAC
* *
470224 ATTGGGATCCAAAAACACATTGCCTTCATTAGGATACATGATAGTGGCACTTTGGTGTCGCAAGA
131 ATTGGGATCCAAAAACACATTGCCTTCATTAGGATACATGACATTGGCACTTTGGTGTCGCAAGA
* *
470289 AAAGCTTTTCTTTCCACTATTTTTGATAAAATCAAAGTTTGCCTCTTAAACAAGACAAACATGAA
196 AAAGCTTTT-TTTCCACTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* *
470354 CGGTCATACTAATCCCCGTTCATTTCGAGATTAAGCACCATAAATGTAGTCTTCACATAAGGATG
260 CGGTCATACTAATCCCCGTTCATTTCGAGATTAAGCACCATAAACGTAGTCTTCTCATAAGGATG
*
470419 CATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTACCCACCAATTATTAT-AAAGTCTAT
325 CATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTACCAACCAATTATTATAAAAGTCTAT
* * * *
470483 TTTTGTGCCTTAAATGAGCCAAACAGGGATTCTAGGATAAATGTTATTGATGATTTTCTTTTCTT
390 GTTTGTGCCTCAAATGAGCCAAACAGGGATTCTAGGATAAATGTTATTGACGATTTTCTTTTCAT
* *
470548 GGAAATCTTTTTTGTGTCC-TATTTTCCTTATAATCAAAGTTCACCCCTTAAAAAAAACAAGCAT
455 GGAAATCTTTTTTGTG-CCTTATCTTCCTTATAATCAAAGTTCACCCCTTAAAAAAAACAAACA-
* * * * *
470612 CGATTCTCGTAAGAATCTCCACTCTTTTCAGGATTAGGACCCAAAAATACATTTCCTTCATTATT
518 CCATTCTCATAAGAATCTCCACTCTTTTCAAGATTAGGACCCAAAAATACATTCCCTTCATTATG
* *
470677 ATACACGACATTGAAGTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCGTTTTTGATAGAATCA
583 ATACACGACATTGAAGTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCATTTTTGATAGAAACA
470742 AAGTTTGCCGCTTAAGTAAGACAAACATCAATAGTTATACTAATCCCTATTCTTCTTGGGATTAC
648 AAGTTTGCCGCTTAAGTAAGACAAACATCAATAGTTATACTAATCCCTATTCTTCTTGGGATTAC
* *
470807 GCACTATAAGCATAGTTTGTCTTGTCATAAGGATGCATGATAATGATGCTTTGGTTTCTTAAGAA
713 GCACTATAAGCATAGTTTGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAG-A
* *
470872 AGG-CTTTCTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGA
777 AGGCCTTTCTTCCGACCAATTATTATAAAAGTATATGTTCGTGCCTCAAATGAGCCAAACAACGA
*
470936 TTCTAGCATTGTTCTTCATTCGTTTGGTCTTTAGGCACTATAAACACATTATCCTCAT
842 TTCTAGCATTGTTCTTCATTCATTTGGTCTTTAGGCACTATAAACACATTATCCTCAT
* *
470994 TAGGATAAATGATATTTATGATTTTCA-TTTCGTTGAAATCTTTTTTTTGCACTTATTTTCCTTT
1 TAGGATAAATGATATTGATGATTTT-ATTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTT
*
471058 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCCTTCTTTTCAA
65 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAA
*
471123 CATTGGGATCCAAAAACACATTGCCTTCATTAGGATA-ATTGACATTGGCACTTTGGTGTCACAA
130 CATTGGGATCCAAAAACACATTGCCTTCATTAGGATACA-TGACATTGGCACTTTGGTGTCGCAA
* * * *
471187 GAAAAGTTTTTATTTCCACTGTTTTTAATAAAATCCAAGTTTACCTCTTAAATAAGACAAACATG
194 GAAAAGCTTTT-TTTCCACTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* *
471252 AACGGTCATACTAATCCCCGTTCATTTCGAGATTAAGGACCTTAAACGTAGTCTTCTCATAAGGA
258 AACGGTCATACTAATCCCCGTTCATTTCGAGATTAAGCACCATAAACGTAGTCTTCTCATAAGGA
*
471317 TGCATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTTCCAACCAATTATTATAAAAGTCT
323 TGCATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTACCAACCAATTATTATAAAAGTCT
* *
471382 ATGTTTGTGCC-CGGAATGAGCCAAACAAGGATTCTAG
388 ATGTTTGTGCCTC-AAATGAGCCAAACAGGGATTCTAG
471419 TATCGTTCAT
Statistics
Matches: 1212, Mismatches: 102, Indels: 19
0.91 0.08 0.01
Matches are distributed among these distances:
898 43 0.04
899 257 0.21
900 866 0.71
901 46 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (899 bp):
TAGGATAAATGATATTGATGATTTTATTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAC
ATTGGGATCCAAAAACACATTGCCTTCATTAGGATACATGACATTGGCACTTTGGTGTCGCAAGA
AAAGCTTTTTTTCCACTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAC
GGTCATACTAATCCCCGTTCATTTCGAGATTAAGCACCATAAACGTAGTCTTCTCATAAGGATGC
ATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTACCAACCAATTATTATAAAAGTCTATG
TTTGTGCCTCAAATGAGCCAAACAGGGATTCTAGGATAAATGTTATTGACGATTTTCTTTTCATG
GAAATCTTTTTTGTGCCTTATCTTCCTTATAATCAAAGTTCACCCCTTAAAAAAAACAAACACCA
TTCTCATAAGAATCTCCACTCTTTTCAAGATTAGGACCCAAAAATACATTCCCTTCATTATGATA
CACGACATTGAAGTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCATTTTTGATAGAAACAAAG
TTTGCCGCTTAAGTAAGACAAACATCAATAGTTATACTAATCCCTATTCTTCTTGGGATTACGCA
CTATAAGCATAGTTTGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAGGC
CTTTCTTCCGACCAATTATTATAAAAGTATATGTTCGTGCCTCAAATGAGCCAAACAACGATTCT
AGCATTGTTCTTCATTCATTTGGTCTTTAGGCACTATAAACACATTATCCTCAT
Found at i:471459 original size:477 final size:476
Alignment explanation
Indices: 470515--474267 Score: 4578
Period size: 477 Copynumber: 7.9 Consensus size: 476
470505 ACAGGGATTC
* * *
470515 TAGGATAAATGTTATTGATGATTTTCTTTTCTTGGAAATCTTTT-TTGTGTCCTATTTTCC-TTA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTTA
* * * * * *
470578 TAATCAAAGTTCACCCCTTAAAAAAAACAAGCATCGATTCTCGTAAGAATCTCCACTCTTTTCAG
65 -AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * ** *
470643 GATTAGGACCCAAAAATACATTTCCTTCATTATTATACACGACATTGA-AGTTTGGTGTCACAAG
129 GATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAG
* ** * * *
470707 AAAAGCTTTTCACTCCACCGTTTTTGATAGAATCAAAGTTTGCCGCTTAAGTAAGACAAACATCA
194 AAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * * * * * * *
470772 ATAGTTATACTAATCCCTATTCTTCTT-GGGATTACGCACTATAAGCATAGTTTGTCTTGTCATA
259 ATGGTCATACTAATCCCCATTCTT-TTCGAGATTAGGCACCATAA--A-CG-TAGTCTTCTCATA
*
470836 AGGATGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCGACCAATTATTATAAAA
319 AGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAA
* * * **
470901 GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTGGTCT
384 GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGA
470966 TTAGGCACTATAAACACATTATCCTCAT
449 TTAGGCACTATAAACACATTATCCTCAT
* * * * * *
470994 TAGGATAAATGATATTTATGATTTTCATTTCGTTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTTA
* * *
471059 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCCTTCTTTTCAAC
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * *
471124 ATTGGGATCCAAAAACACATTGCCTTCATTAGGATA-ATTGACATTGGCACTTTGGTGTCACAAG
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACA-CGACATTGACACTTTGGTGTCACAAG
* * * * * *
471188 AAAAGTTTTTATTTCCACTGTTTTTAATAAAATCCAAGTTTACCTCTTAAATAAGACAAACATGA
194 AAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * *
471253 ACGGTCATACTAATCCCCGTTCATTTCGAGATTAAGG-ACCTTAAACGTAGTCTTCTCATAAGGA
259 ATGGTCATACTAATCCCCATTCTTTTCGAGATT-AGGCACCATAAACGTAGTCTTCTCATAAGGA
* * * *
471317 TGCATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTTCCAACCAATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * *
471382 ATGTTTGTGCC-CGGAATGAGCCAAACAAGGATTCTAGTATCGTTCATCATTCATTTTGTGATTA
388 ATGTTCGTGCCTC-AAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
*
471446 GGCACTGTAAACACATTATCCTCAT
452 GGCACTATAAACACATTATCCTCAT
* *
471471 TAGGACAAATGATATTGATGATTTTCGTTTCATGGAAATCTTTTCTTTGCCCTATTTTCC-TTAG
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTA-
* * * * * *
471535 AATCAAAAGTTCATCCCCTAAAAAAGACAAGCATTGATTCTCGTATCAATCTCTATTTTTTTCAA
65 AATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
471600 GATTGGGACCCAAAAACACACTT-CTTTCATTAGGATACACGGCATTGACACCTTGGTGTCACAG
129 GATTGGGACCCAAAAACACA-TTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAA
* * * * *
471664 GAAAAGCTTTTCTGTCCA-CTTGTTTTAATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAACAT
193 GAAAAGTTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * * ** *
471728 GAATGGTCATACTAATCCCTATTCTTTTCGGGATTAGGCACCACAAACGTTCTCTTCTTATAAGG
257 GAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * **
471793 ATGCATGACAATGATGCTTTGGTTTCTCAAG-AAGGTCTTTCTTCTGACCAATTATTATATCAGT
322 ATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGG-CTTTCTTCCGACCAATTATTATAAAAGT
* * *
471857 CTATGTTCGTGCCTCAAATGAGCCTAACAAGGATTCTAGTATCGTTCTTCATTCGTTTTGTGATT
386 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
471922 AGGCACTATAAACACATTATCCTCAT
451 AGGCACTATAAACACATTATCCTCAT
* *
471948 TAGGATAAATGATATTGATGACTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAA
* * * * ** * **
472013 ATCAATAGTTCATCCCCTAAAAAAGACAAGCATCAATTCTC-TAACAATTTTAATTCGTTGGAAG
66 ATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
*
472077 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACCTTGGTGT-AGCAAG
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCA-CAAG
* * * * * *
472141 AAAAGCTTTTCTTTCCAACATTTTTGATAGTAA-CAAAGTTTGCCCCTTAAATAAGACAAATATC
194 AAAAGTTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * *
472205 AATCGTCATACTAGT--CC--T-TTTTC-AGATAAGGCACCATAAACGCT-GTCTTCTCATAAGG
258 AATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACG-TAGTCTTCTCATAAGG
* * * * *
472263 ATCCATGATATTGATGCTTTGGGTTCTCAAGAAAGGATTTCTTCTGACCAATTATTAT-AAAGTC
322 ATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTC
* * *
472327 TATGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGTTCTTCATTTATTTTGTAATTA
387 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* *
472392 GGCGCTATAAACATATTATCCTCAT
452 GGCACTATAAACACATTATCCTCAT
* * * * * **
472417 TAGGATAAATTATAGT-ACTAATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTTATTTCCCTAA
1 TAGGATAAATGATATTGA-TGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTT
*
472481 AAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * ** *
472546 GATTAAGG-CCCAAAAACACATTCCCTTCATTAGGATACACGACGTTAATGCTTTGGTGTCGCAA
129 GATT-GGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAA
* * *
472610 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTG
193 GAAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * * *
472675 AATTGTCTTGCTAATCCCCATTCTTCTT-GGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGG
258 AATGGTCATACTAATCCCCATTCTT-TTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * * * *
472739 ATTCATGATAATGATGCTTTGGTTTCTCAAGAAAGGC-TTCCTCCTCACCAATTTTTGT-AAAGT
322 ATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCC-GACCAATTATTATAAAAGT
** * * *
472802 CTAAATTC-TCGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCATCATTCATTTTGTGAT
386 CTATGTTCGT-GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGAT
* *
472866 TGGGCACAATAAACACATTATCCTCAT
450 TAGGCACTATAAACACATTATCCTCAT
* * * * *
472893 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAGTGTTTTCTTTGTCATATTTTTC-TTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAA
* * *
472957 ATTCAAAAGTTCATCCCCTAAA-AAGGACAAGCATCGATTATTGTAACAATCTCCATTCTTTTCA
66 A-TC-AAAGTTCATCCCTTAAATAA-GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
** * * *
473021 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCCTTGGTGTCGCCA
128 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAA
* * * * *
473086 GAAAAGCTTTTT-TTTCCACCATTTTTTATAGAATCAAAGTTTGCCTCTTAGATGAGACAAATAT
193 GAAAAG-TTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * *
473150 GAACGGTCATACTAATCCCCATTCTTTTCGAGATTTGGCACCATAAACATAGTCTTCTCATAAGG
257 GAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGG
* * ** * * *
473215 ATCCATGATATTGATGCTTTGGCATCTCAAGAAAGGCTTTTTTCCGACCAATTATTATCAAAGCC
322 ATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTC
* * * * * * *
473280 TATGCTCCTACCTCAAATGAGACAAACAAGCATTCTAGTATTGTTCATCATTCATTTTGTGATTT
387 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * *
473345 GGCGCCATAAACACCTTATCCTCAT
452 GGCACTATAAACACATTATCCTCAT
*
473370 TAGGATAAATGATATTGATGATTTTCTTTTCAAGGAAATCTTTTCTTTG-CCTCATTTT-CTTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTTA
* * * *
473433 AATCAAATTTCATCCCTTGAATAAGACAAGCATCGATTCTTGTAACAATCTCCATTCCTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * *
473498 ATTGGGACCAAAAAACACATTCCTTTCATTAGGATACACGACATTGCCACTTTGGTGTCGCAAAA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGA
* *
473563 AAAG-TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAGAAACATGAA
195 AAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * * * *
473627 TGGTAATACTAATCCCAATTTTTTTTGGGATTAAGCACGATAAACGTAGTCTTCTTATAAGGATG
260 TGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATG
** *
473692 CATGA-AATTGATGCTTCAGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTATAAAAGTCTA
325 CATGATAA-TGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* ** * * *
473756 T-ATCGTTTCTCAAATGAACCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTTGG
389 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGG
*
473820 CGCTATAAACACATTATCCTCAT
454 CACTATAAACACATTATCCTCAT
* * * **
473843 TAGGATAACTGATATTGGTGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTCCCTAAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAA
* * *
473908 AGCAAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTAACAATTTCCATTCTTTTCAAG
66 ATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * * *
473973 ATTGGGATCCAAAAATACATTACCTTCATTAGGATACATGACATTGACACTTTGATGCCGCAAGA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGA
* * *
474038 AAAGCTTTTT-TTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAAACAAACATGA
195 AAAG-TTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* ** *
474102 ATGGTCATACTAATCTCCACCCTTTTC-AGGATTAGGCACCATAAACGTAGTCTTCTCATAAAGA
259 ATGGTCATACTAATCCCCATTCTTTTCGA-GATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * * *
474166 TGCAGGATAATGATGCTTTGGTTTCTCAAGAAGGGATTTCTTCCGACCAATTGTTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* *
474231 ATGTTAGTGCCTCAAATGAGCTAAAC-AGGTATTCTAG
388 ATGTTCGTGCCTCAAATGAGCCAAACAAGG-ATTCTAG
474268 GATAAATGTT
Statistics
Matches: 2816, Mismatches: 394, Indels: 130
0.84 0.12 0.04
Matches are distributed among these distances:
468 1 0.00
469 164 0.06
470 227 0.08
471 12 0.00
472 3 0.00
473 130 0.05
474 169 0.06
475 257 0.09
476 782 0.28
477 813 0.29
478 8 0.00
479 43 0.02
480 106 0.04
481 99 0.04
482 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (476 bp):
TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
TTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGAA
AAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
GGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGC
ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCA
CTATAAACACATTATCCTCAT
Found at i:472862 original size:476 final size:475
Alignment explanation
Indices: 470515--474267 Score: 4593
Period size: 476 Copynumber: 7.9 Consensus size: 475
470505 ACAGGGATTC
* * * *
470515 TAGGATAAATGTTATTGATGATTTTCTTTTCTTGGAAATCTTTT-TTGTGTCCTATTTTCCTTAT
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAA
* * * * * *
470579 AATCAAAGTTCACCCCTTAAAAAAAACAAGCATCGATTCTCGTAAGAATCTCCACTCTTTTCAGG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * ** * *
470644 ATTAGGACCCAAAAATACATTTCCTTCATTATTATACACGACATTGA-AGTTTGGTGTCACAAGA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAGA
** * * *
470708 AAAGCTTTTCACTCCACCGTTTTTGATAGAATCAAAGTTTGCCGCTTAAGTAAGACAAACATCAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * * * *
470773 TAGTTATACTAATCCCTATTCTTCTTGGGATTACGCACTATAAGCATAGTTTGTCTTGTCATAAG
260 TGGTCATACTAATCCCCATTCTT-TTGGGATTAGGCACCATAA--A-CG-TAGTCTTCTCATAAG
*
470838 GATGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCC-GACCAATTATTATAAAAG
320 GATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TCCTGACCAATTATTATAAAAG
* * * **
470902 TCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTGGTCTT
384 TCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGAT
470967 TAGGCACTATAAACACATTATCCTCAT
449 TAGGCACTATAAACACATTATCCTCAT
* * * * * * *
470994 TAGGATAAATGATATTTATGATTTTCATTTCGTTGAAATCTTTTTTTTGCACTTATTTTCCTTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAA
* * *
471059 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCCTTCTTTTCAAC
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * *
471124 ATTGGGATCCAAAAACACATTGCCTTCATTAGGATA-ATTGACATTGGCACTTTGGTGTCACAAG
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACA-CGACATTGACACTTTGGTGTCGCAAG
* * * * * * *
471188 AAAAGTTTTTATTTCCACTGTTTTTAATAAAATCCAAGTTTACCTCTTAAATAAGACAAACATGA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * * *
471253 ACGGTCATACTAATCCCCGTTCATTTCGAGATTAAGG-ACCTTAAACGTAGTCTTCTCATAAGGA
259 ATGGTCATACTAATCCCCATTC-TTTTGGGATT-AGGCACCATAAACGTAGTCTTCTCATAAGGA
* * * *
471317 TGCATGATATTGATGCTTTGGTTTCTCAAGAAGGGGTTTCTTCC-AACCAATTATTATAAAAGTC
322 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TCCTGACCAATTATTATAAAAGTC
* * * *
471381 TATGTTTGTGCC-CGGAATGAGCCAAACAAGGATTCTAGTATCGTTCATCATTCATTTTGTGATT
386 TATGTTCGTGCCTC-AAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
*
471445 AGGCACTGTAAACACATTATCCTCAT
450 AGGCACTATAAACACATTATCCTCAT
* * *
471471 TAGGACAAATGATATTGATGATTTTCGTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAGA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
471536 ATCAAAAGTTCATCCCCTAAAAAAGACAAGCATTGATTCTCGTATCAATCTCTATTTTTTTCAAG
66 ATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * *
471601 ATTGGGACCCAAAAACACACTT-CTTTCATTAGGATACACGGCATTGACACCTTGGTGTCACAGG
130 ATTGGGACCCAAAAACACA-TTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAG
* * * *
471665 AAAAGCTTTTCTGTCCA-CTTGTTTTAATAGAATCAAAGTTTGCCTCTTAAAAAAGACAAACATG
194 AAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * ** *
471729 AATGGTCATACTAATCCCTATTCTTTTCGGGATTAGGCACCACAAACGTTCTCTTCTTATAAGGA
258 AATGGTCATACTAATCCCCATTCTTTT-GGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * **
471794 TGCATGACAATGATGCTTTGGTTTCTCAAG-AAGGTCTTTCTTCTGACCAATTATTATATCAGTC
322 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGG-CTTTCTCCTGACCAATTATTATAAAAGTC
* * *
471858 TATGTTCGTGCCTCAAATGAGCCTAACAAGGATTCTAGTATCGTTCTTCATTCGTTTTGTGATTA
386 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
471923 GGCACTATAAACACATTATCCTCAT
451 GGCACTATAAACACATTATCCTCAT
*
471948 TAGGATAAATGATATTGATGACTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * ** * **
472013 ATCAATAGTTCATCCCCTAAAAAAGACAAGCATCAATTCTC-TAACAATTTTAATTCGTTGGAAG
66 ATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* *
472077 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACCTTGGTGTAGCAAGA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAGA
* * * * *
472142 AAAGCTTTTCTTTCCAACATTTTTGATAGTAA-CAAAGTTTGCCCCTTAAATAAGACAAATATCA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * ** *
472206 ATCGTCATACTAGT--CC--T-TTTTCAGATAAGGCACCATAAACGCT-GTCTTCTCATAAGGAT
259 ATGGTCATACTAATCCCCATTCTTTTGGGATTAGGCACCATAAACG-TAGTCTTCTCATAAGGAT
* * * * *
472265 CCATGATATTGATGCTTTGGGTTCTCAAGAAAGGATTTCTTCTGACCAATTATTAT-AAAGTCTA
323 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTCCTGACCAATTATTATAAAAGTCTA
* * *
472329 TGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGTTCTTCATTTATTTTGTAATTAGG
388 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGG
* *
472394 CGCTATAAACATATTATCCTCAT
453 CACTATAAACACATTATCCTCAT
* * * * * *
472417 TAGGATAAATTATAGT-ACTAATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTTATTTCCCTAA
1 TAGGATAAATGATATTGA-TGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTA
*
472481 AAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * **
472546 GATTAAGG-CCCAAAAACACATTCCCTTCATTAGGATACACGACGTTAATGCTTTGGTGTCGCAA
129 GATT-GGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAA
* *
472610 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTG
193 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * *
472675 AATTGTCTTGCTAATCCCCATTCTTCTTGGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGGA
258 AATGGTCATACTAATCCCCATTCTT-TTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGA
* * * * *
472740 TTCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTCCTCACCAATTTTTGT-AAAGTCT
322 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTCCTGACCAATTATTATAAAAGTCT
** * * * *
472804 AAATTC-TCGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCATCATTCATTTTGTGATTG
387 ATGTTCGT-GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
*
472868 GGCACAATAAACACATTATCCTCAT
451 GGCACTATAAACACATTATCCTCAT
* * * * *
472893 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAGTGTTTTCTTTGTCATATTTTTCTTAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *
472958 TTCAAAAGTTCATCCCCTAAA-AAGGACAAGCATCGATTATTGTAACAATCTCCATTCTTTTCAA
66 ATC-AAAGTTCATCCCTTAAATAA-GACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
** * *
473022 GATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCCTTGGTGTCGCCAG
129 GATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAG
* * * * * *
473087 AAAAGCTTTTTTTTCCACCATTTTTTATAGAATCAAAGTTTGCCTCTTAGATGAGACAAATATGA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * *
473152 ACGGTCATACTAATCCCCATTCTTTTCGAGATTTGGCACCATAAACATAGTCTTCTCATAAGGAT
259 ATGGTCATACTAATCCCCATTCTTTT-GGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGAT
* * ** * * *
473217 CCATGATATTGATGCTTTGGCATCTCAAGAAAGGCTTTTTTCC-GACCAATTATTATCAAAGCCT
323 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGC-TTTCTCCTGACCAATTATTATAAAAGTCT
* * * * * * *
473281 ATGCTCCTACCTCAAATGAGACAAACAAGCATTCTAGTATTGTTCATCATTCATTTTGTGATTTG
387 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
* * *
473346 GCGCCATAAACACCTTATCCTCAT
452 GCACTATAAACACATTATCCTCAT
* *
473370 TAGGATAAATGATATTGATGATTTTCTTTTCAAGGAAATCTTTTCTTTG-CCTCATTTT-CTTTA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAA
* * * *
473433 AATCAAATTTCATCCCTTGAATAAGACAAGCATCGATTCTTGTAACAATCTCCATTCCTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * *
473498 ATTGGGACCAAAAAACACATTCCTTTCATTAGGATACACGACATTGCCACTTTGGTGTCGCAAAA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAGA
* *
473563 AAAG-TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAGAAACATGAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * *
473627 TGGTAATACTAATCCCAATTTTTTTTGGGATTAAGCACGATAAACGTAGTCTTCTTATAAGGATG
260 TGGTCATACTAATCCCCA-TTCTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATG
** *
473692 CATGA-AATTGATGCTTCAGTTTCTCAAGAAAGGCTTTCT-TTCGACCAATTATTATAAAAGTCT
324 CATGATAA-TGATGCTTTGGTTTCTCAAGAAAGGCTTTCTCCT-GACCAATTATTATAAAAGTCT
* ** * * *
473755 AT-ATCGTTTCTCAAATGAACCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTTG
387 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
*
473819 GCGCTATAAACACATTATCCTCAT
452 GCACTATAAACACATTATCCTCAT
* * * *
473843 TAGGATAACTGATATTGGTGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTCCCTAAAA
1 TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * *
473908 AGCAAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTAACAATTTCCATTCTTTTCAAG
66 ATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * *
473973 ATTGGGATCCAAAAATACATTACCTTCATTAGGATACATGACATTGACACTTTGATGCCGCAAGA
130 ATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAGA
* * * *
474038 AAAGCTTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAAACAAACATGAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* ** * *
474103 TGGTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAAGATG
260 TGGTCATACTAATCCCCATTCTTTT-GGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATG
* * * *
474168 CAGGATAATGATGCTTTGGTTTCTCAAGAAGGGATTTCTTCC-GACCAATTGTTATAAAAGTCTA
324 CATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TCCTGACCAATTATTATAAAAGTCTA
* *
474232 TGTTAGTGCCTCAAATGAGCTAAAC-AGGTATTCTAG
388 TGTTCGTGCCTCAAATGAGCCAAACAAGG-ATTCTAG
474268 GATAAATGTT
Statistics
Matches: 2811, Mismatches: 404, Indels: 120
0.84 0.12 0.04
Matches are distributed among these distances:
468 1 0.00
469 164 0.06
470 228 0.08
471 11 0.00
472 3 0.00
473 130 0.05
474 158 0.06
475 262 0.09
476 802 0.29
477 797 0.28
478 6 0.00
479 43 0.02
480 106 0.04
481 96 0.03
482 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (475 bp):
TAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
TTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
GGTCATACTAATCCCCATTCTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
TGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTCCTGACCAATTATTATAAAAGTCTATGT
TCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTATCCTCAT
Found at i:474666 original size:423 final size:422
Alignment explanation
Indices: 473843--474690 Score: 1089
Period size: 423 Copynumber: 2.0 Consensus size: 422
473833 TTATCCTCAT
* * *
473843 TAGGATAACTGATATTGGTGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTCCCTAAAA
1 TAGGATAAATGATATCGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTCCCTAAAA
* * * * *
473908 AGCAAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTAACAATTTCCATTCTTTTCAAG
66 AGCAAAAGTTCATCCCCTAAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTCTTTTCAAC
* * * * *
473973 ATTGGGATCCAAAAATACATTACCTTCATTAGGATACATGACATTGACACTTTGATGCCGCAAGA
131 ATTGGAACCCAAAAACACATTACCTTCATTAGGATACACGACATTGACACTTTGATGCCACAAGA
** * * **
474038 AAAGCTTTTTTTTCCACCGTTTTTGATACAATCAAAGTTTGCCTTTTAAATAAAACAAACATGAA
196 AAAGCTTTTCATTCCACCATTTTTGATACAATCAAAGTTTACCGCTTAAATAAAACAAACATGAA
* * * *
474103 TGGTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATAAAGATG
261 TAGTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAAAGTAGTCTACTCATAAAGACG
* * *
474168 CAGGATAATGATGCTTTGGTTTCTCAAGAAGGGATTTCTTCCGACCAATTGTTATAAAAGTCTAT
326 CAAGATAATGATGCTTTGGTTTCTCAAGAAAGGATTTCTTCCGACCAATTATTATAAAAGTCTAT
*
474233 GTTAGTGCCTCAAATGAGCTAAAC-AGGTATTC
391 GTTAGTGCCTCAAATGAGCCAAACAAGG-ATTC
* * ** * *
474265 TAGGATAAATGTTATCGATGATTTTCTTTTCATGGTAATCTTTT-TTGTGCCCTATTTTGCTTAT
1 TAGGATAAATGATATCGATGATTTTCTTTTCATGGAAATCTTTTCTT-TGCCCTATTTCCCTAAA
* *
474329 AATC-AAAGTTCATCCCCTAAATAAGACAAGCACCGATTCTCGTAAGAATCTCCATTCTTTTCAA
65 AAGCAAAAGTTCATCCCCTAAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * *
474393 CATTGGAACCCAAAAACACATTCCCTTCATTATGATACACGACATTGA-AGTTTGATGTCACAAG
130 CATTGGAACCCAAAAACACATTACCTTCATTAGGATACACGACATTGACACTTTGATGCCACAAG
* * * *
474457 -AAAGCTTTTCATTCCACCATTTTTTATAGAATCAAAGTTTACCGCTTAAGTAAGACAAACATGA
195 AAAAGCTTTTCATTCCACCATTTTTGATACAATCAAAGTTTACCGCTTAAATAAAACAAACATGA
* ** * * * *
474521 ATAGTTATACTAATC-CCTATTCTTCTT-GGGATTAGGGACTATAAGCATAGTTTGTCTACTCAT
260 ATAGTCATACTAATCTCC-ACCCTT-TTCAGGATTAGGCACCATAA--A-AG-TAGTCTACTCAT
* * *
474584 AAGGACGCAAGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAA
319 AAAGACGCAAGATAATGATGCTTTGGTTTCTCAAGAAAGGATTTCTTCCGACCAATTATTATAAA
*
474649 AGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTC
384 AGTCTATGTTAGTGCCTCAAATGAGCCAAACAAGGATTC
474688 TAG
1 TAG
474691 CATTGTTCTT
Statistics
Matches: 364, Mismatches: 54, Indels: 15
0.84 0.12 0.03
Matches are distributed among these distances:
418 2 0.01
419 85 0.23
420 15 0.04
421 99 0.27
422 56 0.15
423 104 0.29
424 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (422 bp):
TAGGATAAATGATATCGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTCCCTAAAA
AGCAAAAGTTCATCCCCTAAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTCTTTTCAAC
ATTGGAACCCAAAAACACATTACCTTCATTAGGATACACGACATTGACACTTTGATGCCACAAGA
AAAGCTTTTCATTCCACCATTTTTGATACAATCAAAGTTTACCGCTTAAATAAAACAAACATGAA
TAGTCATACTAATCTCCACCCTTTTCAGGATTAGGCACCATAAAAGTAGTCTACTCATAAAGACG
CAAGATAATGATGCTTTGGTTTCTCAAGAAAGGATTTCTTCCGACCAATTATTATAAAAGTCTAT
GTTAGTGCCTCAAATGAGCCAAACAAGGATTC
Found at i:477022 original size:21 final size:21
Alignment explanation
Indices: 476996--477036 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
476986 ACAAAGATCG
476996 ATGTATCGATACATTTCCTTA
1 ATGTATCGATACATTTCCTTA
477017 ATGTATCGATACATTTCCTT
1 ATGTATCGATACATTTCCTT
477037 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATTTCCTTA
Found at i:477071 original size:13 final size:13
Alignment explanation
Indices: 477053--477100 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
477043 AGCTTCGTAG
477053 CGATACATTGTAT
1 CGATACATTGTAT
477066 CGATACAACTTATGTAT
1 CGATAC-A--T-TGTAT
*
477083 TGATACATTGTAT
1 CGATACATTGTAT
477096 CGATA
1 CGATA
477101 TAAAACTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 15 0.52
14 2 0.07
16 2 0.07
17 10 0.34
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:477151 original size:32 final size:32
Alignment explanation
Indices: 477053--477155 Score: 147
Period size: 32 Copynumber: 3.3 Consensus size: 32
477043 AGCTTCGTAG
477053 CGATACATTGTATCGATAC--AACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* * *
477083 TGATACATTGTATCGATATAAAACTTATGTAA
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
477115 CGATACATTGTATCGATACAAAACTTATATGT
1 CGATACATTGTATCGATACAAAACTTATGTAT
477147 CGATACATT
1 CGATACATT
477156 TACTGAATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
30 17 0.27
32 46 0.73
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.36
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:477934 original size:42 final size:41
Alignment explanation
Indices: 477888--478105 Score: 213
Period size: 42 Copynumber: 5.1 Consensus size: 41
477878 ATTTTTCGAA
* * *
477888 GACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTCTGAG
1 GACAAAGGAAAAAGGAAAAT-AAATGCGTCCTGCTCTTTGAG
* *
477930 GACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAG
1 GACAAAGGAAAAAGGAAAATAAA-TGCGTCCTGCTCTTTGAG
*
477972 GACTAGAAGGGAAGAGAAGG-AAATAAAGAGCGTCCTGCTCTTTGAG
1 GAC-A-AA-GGAA-A-AAGGAAAATAAA-TGCGTCCTGCTCTTTGAG
* * *
478018 GATAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTTTTTGAG
1 GACAAAGGA-AAAAGGAAAA-TAAATGCGTCCTGCTCTTTGAG
* * * *
478061 GACAAAAGAAAGAGGAAAATAAAGTGTGTCCTGCTCTTTAAG
1 GACAAAGGAAAAAGGAAAATAAA-TGCGTCCTGCTCTTTGAG
478103 GAC
1 GAC
478106 TACAAAGTGC
Statistics
Matches: 147, Mismatches: 19, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
41 6 0.04
42 67 0.46
43 31 0.21
44 8 0.05
45 4 0.03
46 27 0.18
47 4 0.03
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.19
Consensus pattern (41 bp):
GACAAAGGAAAAAGGAAAATAAATGCGTCCTGCTCTTTGAG
Found at i:478193 original size:62 final size:59
Alignment explanation
Indices: 478089--478283 Score: 185
Period size: 55 Copynumber: 3.4 Consensus size: 59
478079 ATAAAGTGTG
* * * * * *
478089 TCCTGCTCTTTAAGGACT-ACAAAGTGCCACCAAATTGAGTGGGCTTTGAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTCGTGTGGGCTTTG--AA-AAAAAGGCA
* * * *
478151 TCCTGTTCTTTGAGGACTGGAGGGTGCCACTAACTCGTGTGGGCTTT----AAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAAAAGGCA
*
478206 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG----AAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAAAAGGCA
478261 TCCTGCTCTTTGAGGACT-AAAGG
1 TCCTGCTCTTTGAGGACTGAAAGG
478284 GTGAAAAGAG
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
54 5 0.04
55 74 0.64
62 37 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAAAAGGCA
Found at i:478232 original size:55 final size:55
Alignment explanation
Indices: 478143--478283 Score: 212
Period size: 55 Copynumber: 2.6 Consensus size: 55
478133 TTTGAAAAGA
* * * * *
478143 AAAAGGCGTCCTGTTCTTTGAGGACTGGAGGGTGCCACTAACTCGTGTGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
*
478198 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
*
478253 GAAAGGCATCCTGCTCTTTGAGGACT-AAAGG
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
478284 GTGAAAAGAG
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
54 5 0.06
55 74 0.94
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
Found at i:478398 original size:210 final size:212
Alignment explanation
Indices: 478088--478494 Score: 633
Period size: 210 Copynumber: 1.9 Consensus size: 212
478078 AATAAAGTGT
* *
478088 GTCCTGCTCTTTAAGGACTACAAAGTGCCACCAAATTGAGTGGGCTTTGAAAAGAAAAAGGCGTC
1 GTCCTACTCTTTAAGGACTACAAAGTGCCACCAAATTGAGTGGGCTTTGAAAAGAAAAAGGCATC
* * *
478153 CTGTTCTTTGAGGACTGGAGGGTGCCACTAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
66 CTGCTCTTTGAGGACTGGAGAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
* *
478218 AGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACT-AA
131 AGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAA
478281 AGGGTGAAAAGAGAGAGC
195 AGGGTGAAAAGAGAGAGC
* * * * *
478299 GTCCTACTCTTTAAGGACTAGAATGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCATC
1 GTCCTACTCTTTAAGGACTACAAAGTGCCACCAAATTGAGTGGGCTTTGAAAAGAAAAAGGCATC
* *
478363 CTGCTCTTTGAGGACT-GAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
66 CTGCTCTTTGAGGACTGGAG-AGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
*
478427 GAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAA
130 GAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAA
478492 AGG
195 AGG
478495 TGCCACCAAC
Statistics
Matches: 178, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
209 3 0.02
210 123 0.69
211 52 0.29
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (212 bp):
GTCCTACTCTTTAAGGACTACAAAGTGCCACCAAATTGAGTGGGCTTTGAAAAGAAAAAGGCATC
CTGCTCTTTGAGGACTGGAGAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
AGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGAAA
GGGTGAAAAGAGAGAGC
Found at i:478444 original size:55 final size:54
Alignment explanation
Indices: 478297--478547 Score: 315
Period size: 55 Copynumber: 4.5 Consensus size: 54
478287 AAAAGAGAGA
* * * *
478297 GCGTCCTACTCTTTAAGGACTAGAATGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTCGTGTGGGCTTT-----G-AAAG
*
478358 GCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGA-AAGTGCCACCAACTCGTGTGGGCTTTGAAAG
* *
478413 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
* * *
478468 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTCGTGTGGGCTTTGAAAG
478523 GCGTCCTGCTCTTTGAGGACT-AAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAG
478548 GGTGAAAAAA
Statistics
Matches: 173, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
53 1 0.01
54 7 0.04
55 118 0.68
56 3 0.02
60 2 0.01
61 42 0.24
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (54 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
Found at i:478586 original size:265 final size:265
Alignment explanation
Indices: 478143--478814 Score: 1130
Period size: 265 Copynumber: 2.5 Consensus size: 265
478133 TTTGAAAAGA
* *** *
478143 AAAAGGCGTCCTGTTCTTTGAGGACTGGAGGGTGCCA-CTAACTCGTGTGGGCTTTAAAAGGCAT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCATC-AACTCGTGTGGGCTTTGAAAGGCAT
*
478207 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
65 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
* * * *
478272 GAGGACTAAAGGGTGAAAAGAGAGAGCGTCCTACTCTTTAAGGACTAGAATGTGCCACCAACTTG
130 GAGGACTAAAGGGTGAAAAAAGAGAGCATCCTACTCTTTAAGCACTAGAAGGTGCCACCAACTTG
478337 TGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTG
195 TGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTG
478402 GGCTTT
260 GGCTTT
*
478408 GAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATC
*
478473 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGGCGTCCTGCTCTTTG
66 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
* * * *
478538 AGGACTAAAGGGTGAAAAAAGAGAGCATCCTGCTCTTTGAGCACTAGAAGGTGTCACCAACTTTT
131 AGGACTAAAGGGTGAAAAAAGAGAGCATCCTACTCTTTAAGCACTAGAAGGTGCCACCAACTTGT
478603 GTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGG
196 GTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGG
478668 GCTTT
261 GCTTT
* *
478673 AAAAGGCGTCCTGCTCTTTAAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATC
* * *
478738 CTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCCCTTTG
66 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
478803 AGGACTGAAAGG
131 AGGACT-AAAGG
478815 TGCCACCAAC
Statistics
Matches: 382, Mismatches: 23, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
265 376 0.98
266 6 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (265 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATC
CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
AGGACTAAAGGGTGAAAAAAGAGAGCATCCTACTCTTTAAGCACTAGAAGGTGCCACCAACTTGT
GTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGG
GCTTT
Found at i:478632 original size:210 final size:204
Alignment explanation
Indices: 478358--478761 Score: 571
Period size: 210 Copynumber: 2.0 Consensus size: 204
478348 AAAGGAAAAG
* *
478358 GCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCATCCTGCTCTTTGAGCACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCT
* * *
478423 CTTTGAGGACTG-GAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGA
66 CTTTGAGGACTGAG-AAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGA
* * *
478487 CT-GAAAGGTGCCACCAACTTGTGTGGGCTTCGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGT
130 CTGGAAA-ATGCCACCAACTCGTGTGGGCTTCGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGT
478551 GAAAAAAGAGA
194 GAAAAAAGAGA
* **
478562 GCATCCTGCTCTTTGAGCACT-AGAAGGTGTCACCAACTTTTGTGGGCTTTAAAAGGAAAAGGCA
1 GCATCCTGCTCTTTGAGCACTGAGAA-GTGCCACCAACTCGTGTGGGCTTT-----G-AAAGGCA
* *
478626 TCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
59 TCCTGCTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTT
* *
478691 TAAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAA
124 TAAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTCGAAAGGCGTCCTGCTCTTTGAGGACTAA
478756 AAGGTG
189 AAGGTG
478762 CCACCAACTT
Statistics
Matches: 176, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
203 4 0.02
204 41 0.23
209 1 0.01
210 125 0.71
211 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (204 bp):
GCATCCTGCTCTTTGAGCACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCT
CTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGAC
TGGAAAATGCCACCAACTCGTGTGGGCTTCGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGA
AAAAAGAGA
Found at i:478709 original size:55 final size:54
Alignment explanation
Indices: 478618--478841 Score: 306
Period size: 55 Copynumber: 4.1 Consensus size: 54
478608 CTTTAAAAGG
* *
478618 AAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGA-AAATGCCACCAACTCGTGTGGGCTTT
* *
478673 AAAAGGCGTCCTGCTCTTTAAGGACTGGAAAATGCCATCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTCGTGTGGGCTTT
* * *
478728 GAAAGGCGTCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAA--TGCCACCAACTCGTGTGGGCTTT
* * *
478783 GAAAGGCGTCCTGCCCTTTGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTCGTGTGGGCTTT
478838 AAAA
1 AAAA
478842 AGAAAAAAAG
Statistics
Matches: 150, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
53 4 0.03
55 141 0.94
56 5 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (54 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAAATGCCACCAACTCGTGTGGGCTTT
Found at i:479883 original size:464 final size:461
Alignment explanation
Indices: 478884--481405 Score: 2562
Period size: 463 Copynumber: 5.4 Consensus size: 461
478874 AGGGCTAAAA
* ** * *
478884 AAGACAAGCATCGATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGACCTAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * *
478949 CTTTCTTTAGGATACACGAC-TTTAGCGCGTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-CCGT
66 CTTTCATTAGGATACACGACATTGA-TGCGTTAGTATCGCAAGAAAAGCTTTTCTTTC-CACCGT
* * *
479012 TTTTGATAGAATCAA-AGTTTGACTCTTAAAAAAGAGAAGCATGAATGGTCATACTAATCCCCAT
129 TTTTGATAGAATCAATAGTTTGCCTCTT-AAATA-A-AA-C----A-----A-A-TAATCCACAT
* ** * * * *
479076 TCTTTTCGGGACAAGGTACCATAAACGTCGTCTTCTCATAAGGATCCATGATATTGATGCTTTGG
179 TCTTTTCGAGA-TTGGCACCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGG
* * * *
479141 TTTCTCAAGAAAGGCTTCCTTCCGACCAATTACTATAAAGTCTAAGTTCGTGCCTCAAATGAGCC
243 TTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCC
* * *
479206 AAACAAGGATTCTAATATTGATCTTCATTCATTTTGTGATTATGCACTACAAACACATAATCCTC
308 AAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTC
* * * ** *
479271 ATTAGGATAAACGATATTGATGATTTTCTTTTAATTGAAATCTTTTTTTTTGCATTTATTTTCCT
373 ATTAGGATAAATGATATTGATGATTTTCCTTTCA-TGAAATCTTTTTTTTTGCCCTAATTTTCC-
*
479336 TTAAAA-CAAAGTTCATCCCCTAAAT
436 TTAAAATCAAAGTTCATCCCCTCAAT
* *
479361 AAGAAAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACAATG
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACAC-ATT
* * * ** *
479426 CC-TTCGTTAGGATACATC-ACATTGGTGCGTTAGTGTTACAAGAAAAGCTTTTCCTTCCACCGT
65 CCTTTCATTAGGATACA-CGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGT
*
479489 TTTTGATAGAATCAATA-TTTGCCTCTTAAATAAAACAAATAATCCACATTCTTTTCGGGATTGT
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATAATCCACATTCTTTTCGAGATTG-
* * * * *
479553 GCACCACAAACGTAGTCTTCTTATAAAGATGCATGATAATGATGGTTTGGTTTCTTAAGAAAGGC
193 GCACCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGC
* * * * *
479618 TTTTTTCTGACCAGTTATTATAAAAGTCTATGTTTGAGCCACAAATGAGCCAAACAAGGATTCTA
258 TTTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTA
* * ** ** * * *
479683 GTATTGTTCTACATTTGTTTTGAAATTAGGCATTGCAAACACATTATCCTCATTAAGATAAATGA
322 GTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAATGA
* *
479748 TATTGATGATTTTCCTTTCACGAAAATCATTTGTTTTTGCCCTAATTTTCCTTAAAATCAAAGTT
387 TATTGATGATTTTCCTTTCATG-AAATC-TTTTTTTTTGCCCTAATTTTCCTTAAAATCAAAGTT
*
479813 CATCCCTTCAAT
450 CATCCCCTCAAT
* * * *
479825 AAGACAGGCATTGATACTTGTAATAATCTCCATT-TTTTGCAAGATTAGGACCCAAAAACACATT
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTT-CAAGATTAGGACCCAAAAACACATT
* * * * * * *
479889 CCTTTCATTAGGATACACTACGTTGATGCTTTGGCATCGCAAGACAAGCTTTTCTTTCCATCGTT
65 CCTTTCATTAGGATACACGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * *
479954 TTTAATATAATC-ATAGTTTGCCTCTTAAATAAGACAAACTTGAATGGTCATTCTAATCCCTATT
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAA--T-AA---TC---C--A---C-ATT
* * * * * ***
480018 CCTTAT-GAGATTAGGCACCACAAACATAGTTTTCTCATAAGGAAGTATGATATTGATGCTTCAA
180 -CTTTTCGAGATT-GGCACCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGG
* * * * * * *
480082 TTTCTCAAGAATGGGTTTCTTCAGACCAATTATCATAAAGTCTAAATTCGTGCCTCAAAGGAGCC
243 TTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCC
* * * *
480147 AAACAAGGATTCCAGTATTGATATTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTT
308 AAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTC
* * * *
480212 ATTAGGATAAATGATATTGACGATTTTCCTTTCATG-GATC-TTTTCTTTGACCT-ATTTTCCTT
373 ATTAGGATAAATGATATTGATGATTTTCCTTTCATGAAATCTTTTTTTTTGCCCTAATTTTCCTT
*
480274 AAAATCAAAAGTTCAT-CCCTCAAAA
438 AAAATC-AAAGTTCATCCCCTC-AAT
* * ** ** * *
480299 AAGTCAAGCATCGATTCTCCTAACAATCTTTATTCTCTTCAAGATTGGGACCCAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * *
480364 CTTTCATTAGGATACACGAC-TTTA-GCGCATTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-CCG
66 CTTTCATTAGGATACACGACATTGATGCG--TTAGTATCGCAAGAAAAGCTTTTCTTTC-CACCG
*
480426 TTTTTGATAGAATCAA-AGTTTGACTCTTAAA-AAAGACAAGCATGAATGGTCAAACAAATCCCC
128 TTTTTGATAGAATCAATAGTTTGCCTCTTAAATAAA-ACAA--AT-AA---TC---C--A----C
* * * *
480489 ATTCCTTTT-GAGATTAGGCACCATAAACGTCGTCTTCTCAAAAGGATCCATGATATTGATGCTT
177 ATT-CTTTTCGAGATT-GGCACCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTT
* ** *
480553 TGGTCTCTCAAGAAAGGCTGCCTTCTGACCAATTACTATAAAGTCTAAG-TTGTGCCTCAAATGA
240 TGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGA
* * * *
480617 GCCAAACAAGGATTCTAATATTGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATAATC
305 GCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATC
* * *
480682 CTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCGTTTTTTTTTGCACTTATTT
370 CTCATTAGGATAAATGATATTGATGATTTTCCTTTCA-TGAAATC-TTTTTTTTTGCCCTAATTT
*
480747 TCCTTTAAAA-CAAAGTTCATCCCCTAAAT
433 TCC-TTAAAATCAAAGTTCATCCCCTCAAT
* *
480776 AAGAAAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACAATG
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACAC-ATT
* * * *
480841 CC-TTCATTAGGATACATGACATTGACGCGTTAGTATTGCAACAAAAGCTTTTCTTTCCACCGTT
65 CCTTTCATTAGGATACACGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
*
480905 TTTGATAGAATCAATA-TTTGCCTCTTAAATAAAACAAATAATCCACATTCTTTTCCAGATTGGG
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATAATCCACATTCTTTTCGAGATT-GG
* * * * * * *
480969 CACGACAAACATTGTCTTCTTATAAGGATGCATGATAATGATGCTTTGGTTTCTTAGGAAAGGCT
194 CACCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCT
* * * *
481034 TTTTTCTGACCAGTTATTATAAAAGTCTATGTTTGTGCCACAAATGAGCCAAACAAGGATTCTAG
259 TTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAG
* * ** * * * *
481099 TATTGTTCTACATTTTTTTTGTAATTAGGCATTGCAAACACATTATCCTCATTAAGATAAATGAT
323 TATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAATGAT
*
481164 ATTGATGATTTT-CTTTCATGGAAATCTTTTTTTTTTGCCTTAATTTTCCTTAAAATCAAAGTTC
388 ATTGATGATTTTCCTTTCAT-GAAATC-TTTTTTTTTGCCCTAATTTTCCTTAAAATCAAAGTTC
* *
481228 GTCCCTTCAAT
451 ATCCCCTCAAT
* ** * * * * * **
481239 AAGACAGGCATCAATTCTCGTAATAATCTGCATT-TTTTGCAAGATTAAGACCCAGATGCACATT
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTT-CAAGATTAGGACCCAAAAACACATT
* * * *
481303 CCTTTCACTAGGATACACGACGTTGATGC-TTCGTAATCGCAAGACAAGCTTTTCTTTCCACCGT
65 CCTTTCATTAGGATACACGACATTGATGCGTTAGT-ATCGCAAGAAAAGCTTTTCTTTCCACCGT
* * *
481367 TTTTGATAGAATCAA-AGTTTACCTCTTAAGTAAGACAAA
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAA
481406 CATGAATGGT
Statistics
Matches: 1710, Mismatches: 271, Indels: 142
0.81 0.13 0.07
Matches are distributed among these distances:
461 6 0.00
462 193 0.11
463 315 0.18
464 263 0.15
466 2 0.00
467 2 0.00
468 1 0.00
469 1 0.00
470 2 0.00
471 2 0.00
472 2 0.00
473 133 0.08
474 258 0.15
475 15 0.01
476 10 0.01
477 274 0.16
478 141 0.08
479 85 0.05
480 5 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (461 bp):
AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
CTTTCATTAGGATACACGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTT
TTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATAATCCACATTCTTTTCGAGATTGGCA
CCACAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTT
CTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
TGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAATGATATT
GATGATTTTCCTTTCATGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAAATCAAAGTTCATCCC
CTCAAT
Found at i:481317 original size:463 final size:463
Alignment explanation
Indices: 478884--489455 Score: 4880
Period size: 475 Copynumber: 22.0 Consensus size: 463
478874 AGGGCTAAAA
* ** * *
478884 AAGACAAGCATCGATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGACCTAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * * *
478949 CTTTCTTTAGGATACACGAC-TTTAGCGCGTTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-CCGT
66 CTTTCATTAGGATACATGACATTGA-TGCGTTAGTATCGCAAGAAAAGCTTTTCTTTC-CACCGT
* *
479012 TTTTGATAGAATCAA-AGTTTGACTCTTAAA-AAAGAGAAGCATGAATGGTCATACTAATCCCCA
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAA-ACAA--ATGAA---TC---C--A---CCA
** ** * * * * *
479075 TTCTTTTCGGGACAAGGTACCATAAACGTCGTCTTCTCATAAGGATCCATGATATTGATGCTTTG
180 TTCTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTG
* * * *
479140 GTTTCTCAAGAAAGGCTTCCTTCCGACCAATTACTATAAAGTCTAAGTTCGTGCCTCAAATGAGC
245 GTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGC
* * *
479205 CAAACAAGGATTCTAATATTGATCTTCATTCATTTTGTGATTATGCACTACAAACACATAATCCT
310 CAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCT
* * * *
479270 CATTAGGATAAACGATATTGATGATTTTCTTTTAATTGAAATCTTTTTTTTTGCATTTATTTTCC
375 CATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGC-CTTATTTTCC
*
479335 TTTAAAA-CAAAGTTCATCCCCTAAAT
438 -TTAAAATCAAAGTTCATCCCCTCAAT
* *
479361 AAGAAAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACAATG
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACAC-ATT
* * * * ** *
479426 CC-TTCGTTAGGATACATCACATTGGTGCGTTAGTGTTACAAGAAAAGCTTTTCCTTCCACCGTT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
**
479490 TTTGATAGAATCAATA-TTTGCCTCTTAAATAAAACAAAT-AATCCA-CATTCTTTTCGGGATT-
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATGAATCCACCATTCTTTTCCAGATTA
* * * * * *
479551 GTGCACCACAAACGTAGTCTTCTTATAAAGATGCATGATAATGATGGTTTGGTTTCTTAAGAAAG
195 G-GCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAG
* * * * *
479616 GCTTTTTTCTGACCAGTTATTATAAAAGTCTATGTTTGAGCCACAAATGAGCCAAACAAGGATTC
259 GCTTTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTC
* * ** ** * * *
479681 TAGTATTGTTCTACATTTGTTTTGAAATTAGGCATTGCAAACACATTATCCTCATTAAGATAAAT
323 TAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAAT
* * * *
479746 GATATTGATGATTTTCCTTTCACGAAAATCATTTGTTTTTGCCCTAATTTTCCTTAAAATCAAAG
388 GATATTGATGATTTT-CTTTCATGGAAATC-TTTTTTTTTG-CCTTATTTTCCTTAAAATCAAAG
*
479811 TTCATCCCTTCAAT
450 TTCATCCCCTCAAT
* * * *
479825 AAGACAGGCATTGATACTTGTAATAATCTCCATT-TTTTGCAAGATTAGGACCCAAAAACACATT
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTT-CAAGATTAGGACCCAAAAACACATT
* * * * * *
479889 CCTTTCATTAGGATACACT-ACGTTGATGCTTTGGCATCGCAAGACAAGCTTTTCTTTCCATCGT
65 CCTTTCATTAGGATACA-TGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGT
* * *
479953 TTTTAATATAATC-ATAGTTTGCCTCTTAAATAAGACAAACTTGAATGGTCATTCTAATCCCTAT
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAA--TGAA---TC---C--A--CC-AT
* * * * * **
480017 TCCTTAT-GAGATTAGGCACCACAAACATAGTTTTCTCATAAGGAAGTATGATATTGATGCTTCA
181 T-CTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTG
* * * * * * * *
480081 ATTTCTCAAGAATGGGTTTCTTCAGACCAATTATCATAAAGTCTAAATTCGTGCCTCAAAGGAGC
245 GTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGC
* * *
480146 CAAACAAGGATTCCAGTATTGATATTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCT
310 CAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCT
* * *
480211 TATTAGGATAAATGATATTGACGATTTTCCTTTCATGG--ATC-TTTTCTTTGACC-TATTTTCC
375 CATTAGGATAAATGATATTGATGATTTT-CTTTCATGGAAATCTTTTTTTTTG-CCTTATTTTCC
*
480272 TTAAAATCAAAAGTTCAT-CCCTCAAAA
438 TTAAAATC-AAAGTTCATCCCCTC-AAT
* * ** ** * *
480299 AAGTCAAGCATCGATTCTCCTAACAATCTTTATTCTCTTCAAGATTGGGACCCAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * *
480364 CTTTCATTAGGATACACGAC-TTTA-GCGCATTGGTGTCGCAAGAAAAGCTTTTCTTTCTC-CCG
66 CTTTCATTAGGATACATGACATTGATGCG--TTAGTATCGCAAGAAAAGCTTTTCTTTC-CACCG
*
480426 TTTTTGATAGAATCAA-AGTTTGACTCTTAAA-AAAGACAAGCATGAATGGTCAAACAAATCCCC
128 TTTTTGATAGAATCAATAGTTTGCCTCTTAAATAAA-ACAA--ATGAA---TC---C--A---CC
* * * * * *
480489 ATTCCTTTT-GAGATTAGGCACCATAAACGTCGTCTTCTCAAAAGGATCCATGATATTGATGCTT
179 ATT-CTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTT
* ** *
480553 TGGTCTCTCAAGAAAGGCTGCCTTCTGACCAATTACTATAAAGTCTAAG-TTGTGCCTCAAATGA
243 TGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGA
* * * *
480617 GCCAAACAAGGATTCTAATATTGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATAATC
308 GCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATC
*
480682 CTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCGTTTTTTTTTGCACTTATTT
373 CTCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATC-TTTTTTTTTGC-CTTATTT
*
480747 TCCTTTAAAA-CAAAGTTCATCCCCTAAAT
435 TCC-TTAAAATCAAAGTTCATCCCCTCAAT
* *
480776 AAGAAAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACAATG
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACAC-ATT
* * *
480841 CC-TTCATTAGGATACATGACATTGACGCGTTAGTATTGCAACAAAAGCTTTTCTTTCCACCGTT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
*
480905 TTTGATAGAATCAATA-TTTGCCTCTTAAATAAAACAAAT-AATCCA-CATTCTTTTCCAGATTG
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATGAATCCACCATTCTTTTCCAGATTA
* * * * * *
480967 GGCACGACAAACATTGTCTTCTTATAAGGATGCATGATAATGATGCTTTGGTTTCTTAGGAAAGG
195 GGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGG
* * * *
481032 CTTTTTTCTGACCAGTTATTATAAAAGTCTATGTTTGTGCCACAAATGAGCCAAACAAGGATTCT
260 CTTTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCT
* * ** * * * *
481097 AGTATTGTTCTACATTTTTTTTGTAATTAGGCATTGCAAACACATTATCCTCATTAAGATAAATG
324 AGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAATG
481162 ATATTGATGATTTTCTTTCATGGAAATCTTTTTTTTTTGCCTTAATTTTCCTTAAAATCAAAGTT
389 ATATTGATGATTTTCTTTCATGGAAATC-TTTTTTTTTGCCTT-ATTTTCCTTAAAATCAAAGTT
* *
481227 CGTCCCTTCAAT
452 CATCCCCTCAAT
* ** * * * * * **
481239 AAGACAGGCATCAATTCTCGTAATAATCTGCATT-TTTTGCAAGATTAAGACCCAGATGCACATT
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTT-CAAGATTAGGACCCAAAAACACATT
* * * * *
481303 CCTTTCACTAGGATACACGACGTTGATGC-TTCGTAATCGCAAGACAAGCTTTTCTTTCCACCGT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGT-ATCGCAAGAAAAGCTTTTCTTTCCACCGT
* * *
481367 TTTTGATAGAATCAA-AGTTTACCTCTTAAGTAAGACAAACATGAATGGTCATAATCGTCCCCAT
129 TTTTGATAGAATCAATAGTTTGCCTCTT-A--AATA-AAACA--AAT-G----AATC--CACCAT
* * *
481431 TCTTTTCCGGATTAGGCACCATCATAAATATAGTCTTCTCATAAGGATGTAT-AGTATTGATGCT
181 TCTTTTCCAGATTAGGCACCA-C--AAACATAGTCTTCTCATAAGGATGCATGA-TATTGATGCT
* * * ** ** ** * * *
481495 TCGGTTTCTCGAGAAAAGCTTTCAGCTGACCTCGTCGTTAGGATAAATGATGTTGATGATTTTCT
242 TTGGTTTCTCAAGAAAGGCTTTCTTCTGA-C-C--AATTATTATAAA-G-T-CT-A--AGTTT-G
* * ******** *** * ** * * * **
481560 TTCCATTGAAATCTTTTTTTCACTTATTTTCCT-TTAAATCAAAGTTCATCCCTTAAAAATAAAA
296 TGCC--TCAAATGAGCCAAACAAGGATTCTAGTATT-GATC----TTCATTCATT-----T--TG
* ** * * * * ** * *
481624 AGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCTAAA--A-A--CA-CA-TT
347 TG-ATT-AGGCAC-T-ACAAAC-ACATTATCCTC---ATTAGGA--TAAATGATATTGATGATTT
* * * * * *
481682 CCCTTCATTAGGATACACGACTTTAGCACATTGGTGTCGCAAGAAAAGCTTTTCTTTCCCTCTTT
402 TCTTTCA-T-GGA-A-A--TCTTT------TT--TTTTGC--------CTTAT-TTT--C-C---
* * * *
481747 TTTGATAGAATCAAAGTTTGA-CTCTTAAAT
438 -TT-A-A-AATCAAAG-TTCATCCCCTCAAT
* * * * ** * *
481777 AAGACAAGCA-CGA--ATGGTCATACTAATCCCCATTCTTTTCGGGATTAGG-CACCATAAACGT
1 AAGACAAGCATTGATTCTAGT-A-AC-AATCTCCATTCTTTTCAAGATTAGGAC-CCAAAAAC-A
* * * * * * * * * *
481838 C-GT-CTTCTCATAAGGATCCATGATATTGATGCTTTTGTTTCTCAAGAAAGGC--TTCCTTCCG
61 CATTCCTT-TCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCC-
* ** * * *
481899 ACCAATTACT-ATA-AAGTCTA-AGTTCGTGCCTC--AAATGAGCCAAACAAGGATTCTAGTATT
124 ACC-GTTTTTGATAGAA-TCAATAGTT--TGCCTCTTAAAT-A---AAACAA--A---T-GAATC
* ** * * * * *
481959 GATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATAATC--CTCATTAGGAT-AACTGAT
175 CA-C--CATTC-TTTTCCAGATTAGGCACCA-CAA-ACATAGTCTTCTCATAAGGATGCA-TGAT
* ** * * * * * * * * *
482020 ATTGATGATTTTCTTT-TCATTGAAA-TCTTTTTTCTGCACTTATTTTCTTTTAAA-ACAAAGTT
233 ATTGATGCTTTGGTTTCTCA-AGAAAGGCTTTCTTCTG-AC-CA-ATTATTATAAAGTCTAAGTT
** * * * *** *** *** * * * *** *
482082 CATCCCTTAAATAAAAAAAACGTTGATTCTAGTAACAATGTCCGTTC-TTTCCAAGATT-GGGAC
294 TGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTT-TGTGATTAGGCAC
* * * * * * * * * *** *
482145 -CCAAAAACATAATGCCTTCATTAGGATACATCACATTGACGTG-TTAGTGTTGCAACAAAAGCT
358 TACAAACACATTAT-CC-TCATTAGGATAAATGATATTGA--TGATT-TTCTTTCATGGAAATCT
* *** * ** * * * *
482208 TTTCCTTCCACCGT-TTTT-GATAGAATCAATGTT--T-GCCTC-TT
418 TTT-TTTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTCAAT
* * ** * * ** *
482249 AA-ATAA--A---A---TA--AATAATC-CCTATTCTTTTCGGGATT-GGGCACCACAAACTTAG
1 AAGACAAGCATTGATTCTAGTAACAATCTCC-ATTCTTTTCAAGATTAGGAC-CCAAAAACACAT
* * * * * * * * * *
482301 T-CTTCTTATAAGGATGCATGATAATGATGCTTTGGTTTCTG-AAGAAAGGCTTTT-TTTCGACC
64 TCCTT-TCATTAGGATACATGACATTGATGCGTTAGTATC-GCAAGAAAAGCTTTTCTTTCCACC
* * * * * * *
482363 AATTATT-ATAAAAGTCTAT-GTTTGTGCCAC--AAATGAGCCAAACAGGGATTCTAGTATTGTT
127 -GTTTTTGATAGAA-TCAATAG-TT-TGCCTCTTAAAT-A---AAACA---A--AT-G-A---AT
* * * * ** * * **** *
482424 CTA-CATTCGTTTCGTA-ATTAGGCATCA-ATTC-TCGTAATAATCTCCAT-TCTTTGCAAGATT
174 CCACCATTCTTTTC-CAGATTAGGCACCACAAACATAGT-CT--TCT-CATAAGGATGCATGA-T
** * ** * * * *
482484 GGGACCCAGATGCACATTCCTTTCATTAGGATACACGACGTTGATGCTTCGCTATCGCAAGACAA
233 ---A--TTGATG--CTTTGGTTTC-TCAAGA-A-A-GGC-TT--T-CTT--C--T-G--A-CCAA
* * * * * * *
482549 GCTTTTCTTTCCACTGTTTTTGATAGAA-TCAAAG-TT-TACCTCTTAAGTAAGACAAACATGAA
275 --------TT--A------TT-ATA-AAGTCTAAGTTTGTGCCTC--AAATGAGCCAAACAAGGA
* ** * * *
482611 TGGTC-A-TAATCG-TCCCCATTCTTTTTCG-GATTATGCACCATCATAA-ACA-TAGTCTTCTC
320 T--TCTAGT-ATTGATCTTCATTCATTTT-GTGATTAGGCACTA-CA-AACACATTA-TC--CTC
* ** * * * * * * **** **
482670 ATAAGGATGTATAATATTGATGCTTCGGTT-TCTCAAGAAAAGC-TTTCGACTGACCTCCTCGTT
376 ATTAGGATAAATGATATTGATGATT---TTCTTTCATGGAAATCTTTTTTTTTG-CCT--TATTT
**** * * *** *
482733 AGGATAAATGAT-ATTGATGATT-TTCTTTTCAGT
435 TCCTTAAA--ATCA---AAG-TTCATCCCCTCAAT
* * ** ** * * *** **
482766 --GA-AATCTTTTTTTCTCTTACGTTCCTTTAAATCAAAGTTCATCCCTTAAAAAAGAAAAACGT
1 AAGACAAGC-ATTGAT-TC-TA-G------T-AA-CAATCTCCAT-TCTT-TTCAAG-ATTA-G-
* * * * **
482828 TGATTCTCGTAACAATCTTCATTCTTTTCAAGATTAGGACCTAAAAACACATTCCCTTCATTACG
49 -GA--C-C-CAA-AAAC-ACATTCCTTTC---ATTAGGA--T------ACA-T---GACATT--G
* * * *
482893 ATACACGGCTTTAGCGTGTTGGTGTCGCAGGAGAAGCTTTTCTTTCC-CCTGTTTTTGATAGAAT
90 ----A------T-GC--GTTAGTATCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAAT
* **
482957 CAA-AGTTTGACTCTTAAATAAGACAAGCACGAATGGTCATACTAATCC-CCATTCTTTTCGGGA
141 CAATAGTTTGCCTCTTAAAT-A-A-AA-CA--AAT-G-------AATCCACCATTCTTTTCCAGA
* * ** * *
483020 TTAGGCACCATAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTCAGCTTCTCAAGAG
192 TTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAA
* ** * * *
483085 TGGCTTTCCACAGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATT
257 AGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATT
*
483150 CTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA
322 CTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAA
* * *
483215 TGATATTGATGATTTTCTTTTGATTGAAATC-TTTTTTTTGCGCTTATTTTCCTTTAAATCAAAG
387 TGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGC-CTTATTTTCCTTAAAATCAAAG
* *
483279 TTCATCCCTTAAAT
450 TTCATCCCCTCAAT
* * * * * *
483293 AA-AGCAAGCATCGAGTCTGGTAACAATCTCCATTTTTTTCAAGATTGGGACCTAAAAACACATT
1 AAGA-CAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT
* * * *
483357 GCC-TTCATTAGGATACACGACATTGATGC-TTTGATGTCGCAAGAAAAGTTTTTCTTTCCACCG
65 -CCTTTCATTAGGATACATGACATTGATGCGTTAG-TATCGCAAGAAAAGCTTTTCTTTCCACCG
** *
483420 TTTTCAATAAAATCAA-AGTTTGCCTCTTAAATATGACAAACAAGAATGGTCACACTAATCC-CC
128 TTTTTGATAGAATCAATAGTTTGCCTCTT-AA-AT-A-AAAC-A-AAT-G-------AATCCACC
* * *
483483 ATTCTTTT-CAGGATTAGGCGCCATAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTT
179 ATTCTTTTCCA-GATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTT
** * * * * *
483547 CAGTTTCCCAAGAATGGCTTTCTTCAGACCAATTATTATAAAGTCTAAGTTCGTGCGTCAAATGA
243 TGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGA
* * * * * * * *
483612 GCCAAACAAGGATTCTAGTCTTGATCTT-TTTGTATTTTGTAATTAAGCGCTATAAACCCATTAT
308 GCCAAACAAGGATTCTAGTATTGATCTTCATT-CATTTTGTGATTAGGCACTACAAACACATTAT
* * * * * * *
483676 CCTCATTAAGATAAACGCTA-TCACGATTTTCTTTTCATGGAAATC-TTTTCTTTGCCCTATTTT
372 CCTCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATTTT
* * * * *
483739 CCTTAAATTAAAAAGTTCATCCCTTAAAA
436 CCTTAAAAT-CAAAGTTCATCCCCTCAAT
* * * * *
483768 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAATACACTA
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACA-TT
* * * * * * * *
483833 CC-TTCATTAGGATACACGAAATTGATGCTTTGGTGTCGCAAGCAAAGCTTTTCTTTTCACCATT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
* *
483897 TTTGATAG-ATCAAT-GTTTGTCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATT
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC---C--A---CCATT
** * * * *
483960 CTTTTCGGGATAAGGCACCGCAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTTAGT
182 CTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGT
* * *
484025 TTCTCAA-AAATGGCTTTCTT-TAGACTAATTATTATAAAGTCTAAGTTCGTGGCTCAAATGAGC
247 TTCTCAAGAAA-GGCTTTCTTCT-GACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGC
* * * *
484088 CAAACAAGGATTCTAGCT-TTGATCTTCATTCATTTTGCGATTAAGCATTGTA-AAACACGTTAT
310 CAAACAAGGATTCTAG-TATTGATCTTCATTCATTTTGTGATTAGGCA--CTACAAACACATTAT
* * * * *
484151 CCTCATTTGGATAAATGATATTGATGATTTTCTTTTCTTGGAAATC-TTTTCTTTGCCCTGTTTT
372 CCTCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATTTT
* *
484215 CCTTAAAATCTAAAGTTCATCCCTTAAAT
436 CCTTAAAATC-AAAGTTCATCCCCTCAAT
* * * * *
484244 AAGACAAGCATCGATTCTTGTAACAATCTCCATTCTTTTTAACATTAGGACCGAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * * * * * *
484309 CCTTCATTAGGACACATGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATTTCCACTGGTT
66 CTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTT
**
484374 TTGATAGAATCAA-AGTTTGCCTCTTAAATATGACAAACATGAATGGCCATATGAATCCCTATTC
131 TTGATAGAATCAATAGTTTGCCTCTT-AA-AT-A-AAACA--AAT-G--A-ATCCA--CC-ATTC
* **
484438 TTTT-CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCAGT
183 TTTTCCA-GATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGT
* ** * * *
484502 TTCTCAGGAAAGGCTTTCTTCAAACCAATTATTATAAAGTCCAAGTTCGTGCCTCAAATAAGCCA
247 TTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCA
* * * * * * *
484567 AACAAAGAATCTAGTACTGATCTTCACTCATTTTATGATTAGGCACTATAAACACATTATACTCA
312 AACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCA
* * * ***
484632 TTAGGATAAATGATATTAATGAATTTCTTTTCATGGAAATC-TTTTCTTTGCCCTTATGAGCCTT
377 TTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTG-CCTTATTTTCCTT
** * * *
484696 AAAATTGAAGTTCGT-CGCTTAATT
440 AAAATCAAAGTTCATCCCCTCAA-T
* * * * * * **
484720 GAA-ACAAGTATCGATTCTCGTAATAA-CGTCCATTCTTTTCAAGATTGGGACCCCAAAGTACAT
1 -AAGACAAGCATTGATTCTAGTAACAATC-TCCATTCTTTTCAAGATTAGGACCCAAAAACACAT
* * * * * * * * ** ** * *
484783 TCCCTTCTTTAGGAGACATGGCGTTGACGCTTTGGGGTCAAAAGAAGAGCTTTT-TATTTCACCG
64 TCCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCT-TTCCACCG
*
484847 TTTTTGATAGAATCAA-AGTTTGCCTCTTAAATAAGACAAACATGAACGGTCATACTAATCCCCA
128 TTTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC---C--A---CCA
* * * * * * *
484911 TTCTTTTCGAGAGTAGGCACCATAAACGTAGTCTTTTCATAAGGATCCA--ATATTGTTGCTTTG
180 TTCTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTG
** * * ***
484974 GTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTGTAAAGTTTAAGTCCATGCCTCAAATGAGC
245 GTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGC
* * * *
485039 CTAAACAAGGATTCTAGTATTGATCTCCATTCATTTTATGATTAGGCACTATAAACACATTGTCC
310 C-AAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCC
* * *
485104 TCATTAGGATAAATGATATTGATGATTTTATTTTTATGGAAATC-TTTTCTTTGCC-TATTTTCC
374 TCATTAGGATAAATGATATTGATGATTTT-CTTTCATGGAAATCTTTTTTTTTGCCTTATTTTCC
* *** *
485167 TTAAAATCAAAAGATCATCTTTTAAAAT
438 TTAAAATC-AAAGTTCATCCCCT-CAAT
* * * *
485195 AA-AAAAGCATCGATTCCCA-TAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATT
1 AAGACAAGCATTGATT-CTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACA-T
* * * ** * * * * **
485258 TCC-TTCTTTAGGATACATGACATTGATGCTTTGGTGCCGCAAGATAGGCTTTTATTCCCACTTT
64 TCCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGT
* *
485322 TTTTTATAGAATCAA-AGTTTGCCTCTCAAATAAGATAAACATGAATGGTTATACTAATCC-CCA
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAAT---A-AAACA--AAT-G-------AATCCACCA
* * * ** ** * * * * * *
485385 TTC-TTTCCGGGACTATGCACCGTAAATGTTGTCCTCTCATAAGGGTCCACGATACTGATGCTTT
180 TTCTTTTCC-AGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTT
* *
485449 GGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAG
244 GGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAG
* * * * *
485514 CCAAACATGGATTCTAGTATTGTTCTTTATTCATTTTGTGATTAGGCACTATAAACATATTATCC
309 CCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCC
* * * * * *
485579 TTATTAGGATAAATTATAGTAATGATTTTCTTTTCATGGAAATC-TTTTCTTTGCCCTTATTTCC
374 TCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTG-CCTTATTTTC
* * *
485643 CTAAAAATCAAAGTTCATCCCTTAAAT
437 CTTAAAATCAAAGTTCATCCCCTCAAT
* * * * *
485670 AAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACATATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * * * * * * *
485735 CCTTCATTAGGATACACGACGTTAATGCTTTGGTGTCGCTAGACAAGCTTTTCTTTCCACTGTTT
66 CTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTT
*
485800 TTGATAGAATCAA-AGTTTGCCTCTTAAATAAGACAAATATGAATGGTCATCCTAATCCCCATTC
131 TTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATG-A-----ATCC--A---CCATTC
* * * * * * *
485864 TTTTCGAGATTAGGCACCATAAACGTAGTCTTCTTATAAGGGTCCATGATATTGATGCTTTGGGT
183 TTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTT
* * * * *
485929 TCTTAAGAAAGGCTTTCCTCCGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAA
248 TCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAA
* * * * * * * * *
485994 CCAATGATTCTAATATTGTTTTTGATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCAT
313 ACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCAT
* * * ** * *
486059 TAGGATAAAAGATATTCG-TGATTTTCTTTTCATGAAAAT-GTTTTCCTTGCCCTATTTTCCTAA
378 TAGGATAAATGATATT-GATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATTTTCCTTA
* * *
486122 AAATCAAAGTTTATCCCTTAAAT
441 AAATCAAAGTTCATCCCCTCAAT
* **
486145 AAGACAACCATCAATTCTCA-TAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT
1 AAGACAAGCATTGATTCT-AGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT
* * * * * * * * **
486209 ACC-TCCATTTGGATACACGACATTGACGCTTTGGTATCGCAAGGAAAGCTTTTCTATCCATTGT
65 -CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGT
* * * *
486273 TTTTGATCGAATCAA-AGTTTGCCTCTTAAAAAAGAAAAAAATTAATGGTCATACTAGTCCCCAT
129 TTTTGATAGAATCAATAGTTTGCCTCTT-AAATA-AAACAAATGAA---TC---C-A----CCAT
* * * * * *
486337 TCTTTTCAAGATTACGCACCATAAACGTAGTCTTCTCATAAGGATGCAAGATAATGATGCTTTGG
181 TCTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGG
* * * ** *
486402 TTTCTCAAGAAAGGCTTTCTTTTGACCAATTATTGT--ACTCTCAATGTTCATGCCTCGAATGAG
246 TTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCT-AA-GTTTGTGCCTCAAATGAG
* * * *
486465 CCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTGGGCACTATAAACACATTATCC
309 CCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCC
* * * * * * *
486530 TCATTAGGATAAAAGCTATTGAGGACTTTCTTTTCATGGAAAT-GTTTTTCTTGCCCTATTTTCC
374 TCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATTTTCC
*
486594 TTAAAATCAAAGTTCGT-CCCTCGAAT
438 TTAAAATCAAAGTTCATCCCCTC-AAT
* * *
486620 AAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAATATT-GTGACCTAAAAACACATT
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAG-GACCCAAAAACACATT
* * * * * * * * * *
486684 -CTCTTCATTAGGATACATGACATTCAAGC-TTTGGAGCCACAAGACAAGCTTTTCCTTCCTCCA
65 CCT-TTCATTAGGATACATGACATTGATGCGTTAGTA-TCGCAAGAAAAGCTTTTCTTTCCACCG
*
486747 TTTTTGATAGAATCAA-AGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCA
128 TTTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC---C--A---CCA
** * ** ** * * * * *
486811 TTC-TTTCTGGGACTAGGCACCGTAAATGTTGTCCTCTCATAAGGATCCAAGATATTGATGCCTT
180 TTCTTTTC-CAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTT
* * * * *
486875 GGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATGAAGTCTATGTTCGTGCCACAAATGAG
244 GGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAG
* * * *
486940 CCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGTACTATAAACATATTATCC
309 CCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCC
* * * * * *
487005 TTATTAGGA-GAA-G---TTG-T-A--TT-ATT-AT-GAAATC-TTTTCTTTGCCATTGTTTTGC
374 TCATTAGGATAAATGATATTGATGATTTTCTTTCATGGAAATCTTTTTTTTTGCC-TTATTTTCC
* * ** *
487057 TTAAGATCAAAGTTCGTCCGTTAAAT
438 TTAAAATCAAAGTTCATCCCCTCAAT
* * * * * *
487083 AAGACAACCATCGATTCTCA-TAACAATCTCCGTTCTTTTCAAGATTGGGACTCAAAAACATATT
1 AAGACAAGCATTGATTCT-AGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT
* * ** * * * *
487147 CCCTTCATTGGGATACATGATGTTAATGCTTTGGCTGTCGCAAGACAAA-CTTTTCTTTCCACCG
65 CCTTTCATTAGGATACATGACATTGATGCGTTAG-TATCGCAAGA-AAAGCTTTTCTTTCCACCG
* * *
487211 TTTTTGATAGAATCAA-ATTTTGTCTTTTAAA-AAAGACAAACATGAATAGTCATACTAATCCCC
128 TTTTTGATAGAATCAATAGTTTGCCTCTTAAATAAA-AC-AA-ATG-A-A-TC---C--A---CC
** * *** * ** *
487274 ATTCTTCTT-GGGATTAGGCACCATAAGTGTAGTCTTCTCATAAGGATACCCGATAATGATGCTT
179 ATTCTT-TTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTT
* ** * * * * *
487338 TAGTTTCTCAAGAAAGGC-TTCTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATA
243 TGGTTTCTCAAGAAAGGCTTTC-TTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATG
* * * * * * *
487402 AGCCAAACATA-GATTCTAGTGTTGATCATCATTCATTTTGTTATTACGCCCTAAAAACAAAATT
307 AGCCAAACA-AGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAAC-ACATT
* * * ** ** **
487466 CTCCTCATTAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAAT-GATTTCCTTGCCCAATT
370 ATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATT
* * *
487530 TTCCATAAAATCAAAGTTCATCCCATGAAT
434 TTCCTTAAAATCAAAGTTCATCCCCTCAAT
* *
487560 AAGACAAGCATCGATTCTCA-TAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATT
1 AAGACAAGCATTGATTCT-AGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT
* * * * * * * * *
487624 CCCTTCATTAGGATACACGACTTTGACGCTTTGGTGTCGC-AGAAAAAGCTTTTTTTTCCACCAT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAG-AAAAGCTTTTCTTTCCACCGT
* *
487688 TTTTGATAGAATCAA-AGTTTGCCTATTAAATAAGACAAACATGAATGGTCATACTAATACCCAT
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC---C----A-CCAT
** * * * * * * *
487752 TCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCACATAATGATGTAGGATAATGATGCTTTGG
181 TCTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGG
** ** * * *
487817 TTTCTCAAGAAAATCTTTCTTCCAACCAATTATTATAAAAGTCTATGTTCGTGCCTCAAATAAGC
246 TTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAGC
* * * *
487882 CAAA-TAGTGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATTATCC
310 CAAACAAG-GATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCC
* * *
487946 TTATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTTTGCACTTATGTT
374 TCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATC-TTTTTTTTTGC-CTTATTTT
* * * * * *
488011 CCTTTACATCAAAGTTTATCTCTTAAAT
436 CCTTAAAATCAAAGTTCATCCCCTCAAT
* * * * *
488039 AAGACAAGCATCGATTCTCGTAACACTCTCTATTCTTTTCAAGATTGGGACCCAAAAACACATTA
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATT-
* * * * * *
488104 CC-TTGATTAGGATACACGACATTGGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
65 CCTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * *
488168 CTTGATAGAATCAA-AGTTTACCTCTTAAATAAAACAAACATGAATGGTCATAATATTCCCCATT
130 TTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC--------CACCATT
*** * * * * * * **
488232 CTTTTTGGGATTAGGCACCATATACATAGTCTTCTTATAGGGAAGCGTGATATTGATGCTTCAGT
182 CTTTTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGT
* * * *
488297 TTCTCAAGAATGCCTTTCTT-TAGACCAATTATTATAAAGTCTATGTTCT-TGCCTTAAATGAGC
247 TTCTCAAGAAAGGCTTTCTTCT-GACCAATTATTATAAAGTCTAAGTT-TGTGCCTCAAATGAGC
* * * * * *
488360 CAAACAAGGATTTTAGCATTGATCTTCATTCATTTTATGATTAGGCACAATAAACACGTTATCCT
310 CAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCT
** * * * * * *
488425 CATCCGGATAAATGATATTGATGATTTTTTTTCTTGAAAATC-TTTTCTTCGCCCTATTTTCCTT
375 CATTAGGATAAATGATATTGATGATTTTCTTTCATGGAAATCTTTTTTTTTGCCTTATTTTCCTT
* * * *
488489 AAAATCCGAAGTTCATCCCTTAAAA
440 AAAAT-CAAAGTTCATCCCCTCAAT
* * * * *
488514 AAGACAAGCATCGATTCTCGTAACAATCTCTAATCTTTTCAAGATTGGGACCCAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * * * *
488579 CTTTCATTATGATACACGACATTGACGCGTTGGTGTCGCAAGAAAAGCTTTGCTTTCCACCATTT
66 CTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTT
* * * *
488644 TTTATAGAATCAA-AGTTTGACTCTTAAATATGACAAACATTAATGGTCATACTAATCCTCATTC
131 TTGATAGAATCAATAGTTTGCCTCTT-AA-AT-A-AAACA--AAT-G-AAT-C-CA--C-CATTC
** * *** * *** *
488708 TTCTT-GGGATTAGGCACCATAAGTGTAGTCTTCTCATAAGGATACCCCATAATGATGCTTTGGT
183 TT-TTCCAGATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGT
* ** * * * * *
488772 TTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAATGAGCAA
247 TTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCA
* * * * * * *
488837 AACATGGATTCTAGTATTGATCATCATTCATTTTGTTATTACGCCCTAAAAACACATTCTCCTCA
312 AACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCA
* * * * ** ** * ***
488902 ATAGGATAAAAGATATTGACGATTTTCTTTTCATGAAAAT-GATTTCCTTGCCCTATTTTCAAGA
377 TTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGCCTTATTTTCCTTA
* *
488966 AAATCAAAGTTCATCCCTTGAAT
441 AAATCAAAGTTCATCCCCTCAAT
* * * *
488989 AAGACAAGCATCGATTCTCGTAGCAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTC
1 AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
* * * * * * * *
489054 CCTTCATTCA-GATGCA--ACATTGATGCTTTGGTGTCGCTAGAAAAGCTTTTTTTTTCCACCAT
66 CTTTCATT-AGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGC-TTTTCTTTCCACCGT
* *
489116 TTTTGATAGAATCAA-AGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCGT
129 TTTTGATAGAATCAATAGTTTGCCTCTTAAATAAAAC-AA-ATGAA---TC---C--A---CCAT
* * *
489180 TCTTTT-CAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATGCAGGATAATGATGCTTTG
181 TCTTTTCCA-GATTAGGCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTG
* ** * ** *
489244 GTTTCTCAAGAAAAGCTTTCTTCCAACCCATTATTATAAAAGTCTAAGTTCATGACTCAAATGAG
245 GTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAT-AAAGTCTAAGTTTGTGCCTCAAATGAG
* * * * * *
489309 CCAAACAAGGATTCTAGTATTGTTGC-TCATTCGTTTAGTGATTAGGCACTATAAATATATTATC
309 CCAAACAAGGATTCTAGTATTGAT-CTTCATTCATTTTGTGATTAGGCACTACAAACACATTATC
* ** *
489373 TTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTCAAATC-TTTTTTTTGCACTTATTTG
373 CTCATTAGGATAAATGATATTGATGATTTTC-TTTCATGGAAATCTTTTTTTTTGC-CTTATTTT
*
489437 CCTT-TAATCAAAGTTCATC
436 CCTTAAAATCAAAGTTCATC
489456 TCTTAAATAA
Statistics
Matches: 7955, Mismatches: 1497, Indels: 1288
0.74 0.14 0.12
Matches are distributed among these distances:
458 2 0.00
459 1 0.00
460 6 0.00
461 94 0.01
462 253 0.03
463 418 0.05
464 496 0.06
465 26 0.00
466 16 0.00
467 10 0.00
468 6 0.00
469 14 0.00
470 25 0.00
471 22 0.00
472 26 0.00
473 201 0.03
474 841 0.11
475 1747 0.22
476 1380 0.17
477 700 0.09
478 310 0.04
479 371 0.05
480 17 0.00
481 59 0.01
482 5 0.00
483 3 0.00
484 8 0.00
485 10 0.00
486 5 0.00
487 4 0.00
488 2 0.00
489 3 0.00
490 3 0.00
491 7 0.00
492 2 0.00
493 15 0.00
495 3 0.00
497 9 0.00
498 1 0.00
501 10 0.00
502 4 0.00
503 46 0.01
504 22 0.00
505 17 0.00
506 46 0.01
507 18 0.00
508 13 0.00
509 18 0.00
510 9 0.00
511 7 0.00
512 13 0.00
513 4 0.00
514 7 0.00
515 4 0.00
516 6 0.00
517 5 0.00
518 13 0.00
519 2 0.00
520 5 0.00
522 15 0.00
524 3 0.00
525 3 0.00
526 5 0.00
527 11 0.00
528 9 0.00
529 3 0.00
530 5 0.00
531 9 0.00
532 7 0.00
533 26 0.00
534 54 0.01
535 15 0.00
536 35 0.00
537 94 0.01
538 88 0.01
539 22 0.00
540 3 0.00
542 1 0.00
544 2 0.00
546 4 0.00
547 1 0.00
548 3 0.00
549 4 0.00
550 2 0.00
552 6 0.00
554 4 0.00
555 1 0.00
557 1 0.00
560 3 0.00
561 1 0.00
562 1 0.00
563 1 0.00
564 2 0.00
565 2 0.00
566 3 0.00
569 4 0.00
570 6 0.00
572 4 0.00
574 1 0.00
576 3 0.00
577 11 0.00
578 15 0.00
579 55 0.01
580 12 0.00
581 3 0.00
582 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (463 bp):
AAGACAAGCATTGATTCTAGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAACACATTC
CTTTCATTAGGATACATGACATTGATGCGTTAGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTT
TTGATAGAATCAATAGTTTGCCTCTTAAATAAAACAAATGAATCCACCATTCTTTTCCAGATTAG
GCACCACAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGC
TTTCTTCTGACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAG
TATTGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTATCCTCATTAGGATAAATGAT
ATTGATGATTTTCTTTCATGGAAATCTTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTCATC
CCCTCAAT
Found at i:485205 original size:20 final size:21
Alignment explanation
Indices: 485167--485205 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
485157 CCTATTTTCC
* *
485167 TTAAAATCAAAAGATCATCTT
1 TTAAAATCAAAAAAGCATCTT
485188 TTAAAAT-AAAAAAGCATC
1 TTAAAATCAAAAAAGCATC
485206 GATTCCCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.54, C:0.13, G:0.05, T:0.28
Consensus pattern (21 bp):
TTAAAATCAAAAAAGCATCTT
Found at i:486342 original size:475 final size:475
Alignment explanation
Indices: 482725--489467 Score: 8036
Period size: 475 Copynumber: 14.2 Consensus size: 475
482715 TCGACTGACC
* * **
482725 TCCTCGTTAGGATAAATGATATTGATGATTTTCTTTTCA-GTGAAATCTTTT-TTT-CTCTTACG
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG-GAAATCTTTTCTTTGC-CCTATT
* * * * * * *
482787 TTCCTTTAAATCAAAGTTCATCCCTTAAAAAAGAAAAACGTTGATTCTCGTAACAATCTTCATTC
64 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * *
482852 TTTTCAAGATTAGGACCTAAAAACACATTCCCTTCATTACGATACACGGC-TTTA-GCGTGTTGG
129 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGC-T-TTGG
*
482915 TGTCGC-AGGAGAAGCTTTTCTTTCC-CCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAA
192 TGTCGCAAGGA-AAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAA
* * *
482978 GACAAGCACGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
255 GACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTT
* ** * ** ** *
483043 CTCATAAGGAAGCATGATATTGATGCTTCAGCTTCTCAAGAGTGGCTTTCCACAGACCAATTATT
320 CTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATT
*
483108 ATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTT
385 ATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTT
483173 TGTGATTAGGCACTATAAACACATTA
450 TGTGATTAGGCACTATAAACACATTA
* * * *
483199 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGATTGAAATCTTTTTTTTGCGCTTATTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTT
* * * *
483264 TCCTTTAAATCAAAGTTCATCCCTTAAATAA-AGCAAGCATCGAGTCTGGTAACAATCTCCATTT
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAACAATCTCCATTC
* * *
483328 TTTTCAAGATTGGGACCTAAAAACACATTGCCTTCATTAGGATACACGACATTGATGCTTTGATG
129 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
* * ** * *
483393 TCGCAAGAAAAGTTTTTCTTTCCACCGTTTTCAATAAAATCAAAGTTTGCCTCTTAAATATGACA
194 TCGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * * * *
483458 AACAAGAATGGTCACACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAAACATAGTCTTCTCA
259 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCA
* ** * * *
483523 TAAGGAAGCATGATATTGATGCTTCAGTTTCCCAAGAATGGCTTTCTTCAGACCAATTATTATAA
324 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
* * * *
483588 AGTCTAAGTTCGTGCGTCAAATGAGCCAAACAAGGATTCTAGTCTTGATCTT-TTTGTATTTTGT
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATT-CATTTTGT
* * * *
483652 AATTAAGCGCTATAAACCCATTA
453 GATTAGGCACTATAAACACATTA
* * * * *
483675 TCCTCATTAAGATAAACGCTA-TCACGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
* * *
483739 CCTTAAATTAAAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
66 CCTTAAAAT-CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * *
483804 TTTCAAGATTGGGACCCAAAAATACACTACCTTCATTAGGATACACGAAATTGATGCTTTGGTGT
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* * * * *
483869 CGCAAGCAAAGCTTTTCTTTTCACCATTTTTGATAG-ATCAATGTTTGTCTCTTAAATAAGACAA
195 CGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* ** *
483933 ACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATAAGGCACCGCAAACATAGTCTTCTCAT
260 ACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCAT
* * ** *
483998 AAGGAAGCATGATATTGATGCTTTAGTTTCTCAA-AAATGGCTTTCTTTAGACTAATTATTATAA
325 AAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAA
* *
484062 AGTCTAAGTTCGTGGCTCAAATGAGCCAAACAAGGATTCTAGCT-TTGATCTTCATTCATTTTGC
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAG-TATTGATCTTCATTCATTTTGT
* * * *
484126 GATTAAGCATTGTAAAACACGTTA
453 GATTAGGCACTAT-AAACACATTA
* * *
484150 TCCTCATTTGGATAAATGATATTGATGATTTTCTTTTCTTGGAAATCTTTTCTTTGCCCTGTTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
*
484215 CCTTAAAATCTAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAATCTCCATTCT
66 CCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * * *
484280 TTTTAACATTAGGACCGAAAAACACATTCCCTTCATTAGGACACATGACATTGACGCCTTGGTGT
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* * * * *
484345 CGCAAGAAAAGCTTTTATTTCCACTGGTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGACAA
195 CGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* * * *
484410 ACATGAATGGCCATA-TGAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
260 ACATGAATGGTCATACT-AATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCA
** * **
484474 TAAGGATGCATGATATTGATGCTTCAGTTTCTCAGGAAAGGCTTTCTTCAAACCAATTATTATAA
324 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
* * * * * * *
484539 AGTCCAAGTTCGTGCCTCAAATAAGCCAAACAAAGAATCTAGTACTGATCTTCACTCATTTTATG
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTG
484604 ATTAGGCACTATAAACACATTA
454 ATTAGGCACTATAAACACATTA
* * * **
484626 TACTCATTAGGATAAATGATATTAATGAATTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATGA
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTT
* ** * * * * *
484691 GCCTTAAAATTGAAGTTCGTCGCTTAATTGAA-ACAAGTATCGATTCTCGTAATAA-CGTCCATT
65 TCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTCGTAACAATC-TCCATT
* ** * * * * * * *
484754 CTTTTCAAGATTGGGACCCCAAAGTACATTCCCTTCTTTAGGAGACATGGCGTTGACGCTTTGGG
128 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGT
* * *
484819 GTC-AAAAGAAGAGCTTTT-TATTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAG
193 GTCGCAAGGAA-AGCTTTTCT-TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAG
* * * *
484882 ACAAACATGAACGGTCATACTAATCCCCATTCTTTTCGAGAGTAGGCACCATAAACGTAGTCTTT
256 ACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTC
* * * *
484947 TCATAAGGATCCA--ATATTGTTGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTG
321 TCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* * * *
485010 TAAAGTTTAAGTCCATGCCTCAAATGAGCCTAAACAAGGATTCTAGTATTGATCTCCATTCATTT
386 TAAAGTCTAAGTTCGTGCCTCAAATGAGCC-AAACAAGGATTCTAGTATTGATCTTCATTCATTT
* *
485075 TATGATTAGGCACTATAAACACATTG
450 TGTGATTAGGCACTATAAACACATTA
* *
485101 TCCTCATTAGGATAAATGATATTGATGATTTTATTTTTATGGAAATCTTTTCTTTG-CCTATTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
* ** * * *
485165 CCTTAAAATCAAAAGATCATCTTTTAAAATAA-AAAAGCATCGATTCCCATAACAATCTCCATTC
66 CCTTAAAATC-AAAGTTCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * *
485229 TTTTCAAGATTGGGACCCAAAAACACATTTCCTTCTTTAGGATACATGACATTGATGCTTTGGTG
129 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
* * * * ** * * *
485294 CCGCAA-GATAGGCTTTTATTCCCACTTTTTTTTATAGAATCAAAGTTTGCCTCTCAAATAAGAT
194 TCGCAAGGA-AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * * * * * *
485358 AAACATGAATGGTTATACTAATCCCCATTCTTTCCGGGACTATGCACCGTAAATGTTGTCCTCTC
258 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTC
* * * * *
485423 ATAAGGGTCCACGATACTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATA
323 ATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* * * *
485488 AAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGTTCTTTATTCATTTTGT
388 AAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGT
*
485553 GATTAGGCACTATAAACATATTA
453 GATTAGGCACTATAAACACATTA
* * * *
485576 TCCTTATTAGGATAAATTATAGTAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTT
* * *
485641 CCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * *
485706 TTTCAAGATTGGGACCCAAAAACATATTCCCTTCATTAGGATACACGACGTTAATGCTTTGGTGT
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* *
485771 CGCTA-GACAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
195 CGCAAGGA-AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * * *
485835 AATATGAATGGTCATCCTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACGTAGTCTTCTTA
259 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCA
* * * * *
485900 TAAGGGTCCATGATATTGATGCTTTGGGTTCTTAAGAAAGGCTTTCCTCCGACCAATTATTATAA
324 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
* * * * * * *
485965 AGTCTATGTTCGTGCCTCAAATGAGCCAACCAATGATTCTAATATTGTTTTTGATTCATTTTGTG
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTG
* *
486030 ATTAGGTACTATAAACACATTC
454 ATTAGGCACTATAAACACATTA
* * * *
486052 TCCTCATTAGGATAAAAGATATTCG-TGATTTTCTTTTCATGAAAATGTTTTCCTTGCCCTATTT
1 TCCTCATTAGGATAAATGATATT-GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
486116 TCCTAAAAATCAAAGTTTATCCCTTAAATAAGACAACCATCAATTCTCATAACAATCTCCATTCT
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
486181 TTTCAAGATTAGGACCCAAAAACACATTACCTCCATTTGGATACACGACATTGACGCTTTGGTAT
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* ** * * *
486246 CGCAAGGAAAGCTTTTCTATCCATTGTTTTTGATCGAATCAAAGTTTGCCTCTTAAAAAAGAAAA
195 CGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* * * ** *
486311 AAATTAATGGTCATACTAGTCCCCATTCTTTTCAAGATTACGCACCATAAACGTAGTCTTCTCAT
260 ACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCAT
* * ** *
486376 AAGGATGCAAGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTTTGACCAATTATTGT--A
325 AAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAA
* * * * *
486439 CTCTCAATGTTCATGCCTCGAATGAGCCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTGT
390 GTCT-AA-GTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGT
*
486504 GATTGGGCACTATAAACACATTA
453 GATTAGGCACTATAAACACATTA
* * * * *
486527 TCCTCATTAGGATAAAAGCTATTGAGGACTTTCTTTTCATGGAAATGTTTT-TCTTGCCCTATTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCT-TTGCCCTATTT
* ** *
486591 TCCTTAAAATCAAAGTTCGTCCCTCGAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCT
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * * * *
486656 TTTCAATATTGTGACCTAAAAACACATTCTCTTCATTAGGATACATGACATTCAAGCTTTGGAGC
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* * * *
486721 CACAA-GACAAGCTTTTCCTTCCTCCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
195 CGCAAGGA-AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * * * *
486785 AACATGAATGGTCATACTAATCCCCATTC-TTTCTGGGACTAGGCACCGTAAATGTTGTCCTCTC
259 AACATGAATGGTCATACTAATCCCCATTCTTTTC-GGGATTAGGCACCATAAACGTAGTCTTCTC
* * * *
486849 ATAAGGATCCAAGATATTGATGCCTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATG
323 ATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* * *
486914 AAGTCTATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGT
388 AAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGT
* *
486979 GATTAGGTACTATAAACATATTA
453 GATTAGGCACTATAAACACATTA
* * * * *
487002 TCCTTATTAGGA-GAA-G---TTG-T-A---T-TATT-AT-GAAATCTTTTCTTTGCCATTGTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCC-CTATTT
* * * * * * *
487054 TGCTTAAGATCAAAGTTCGTCCGTTAAATAAGACAACCATCGATTCTCATAACAATCTCCGTTCT
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * ** *
487119 TTTCAAGATTGGGACTCAAAAACATATTCCCTTCATTGGGATACATGATGTTAATGCTTTGGCTG
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGG-TG
* * * * *
487184 TCGCAA-GACAAACTTTTCTTTCCACCGTTTTTGATAGAATCAAATTTTGTCTTTTAAAAAAGAC
194 TCGCAAGGA-AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* **
487248 AAACATGAATAGTCATACTAATCCCCATTCTTCTT-GGGATTAGGCACCATAAGTGTAGTCTTCT
258 AAACATGAATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACGTAGTCTTCT
* ** * * * * *
487312 CATAAGGATACCCGATAATGATGCTTTAGTTTCTCAAGAAAGGC-TTCTTTCCCACCAATTTTTG
322 CATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TTCCGACCAATTATTA
* * * *
487376 TAAAGTCTAAGTTCGTGCCTTAAATAAGCCAAACATA-GATTCTAGTGTTGATCATCATTCATTT
386 TAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTGATCTTCATTCATTT
* * * * * *
487440 TGTTATTACGCCCTAAAAACAAAATTC
450 TGTGATTAGGCACTATAAAC-ACATTA
* * ** * *
487467 TCCTCATTAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAATGATTTCCTTGCCCAATTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
* * * *
487532 CCATAAAATCAAAGTTCATCCCATGAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTT
66 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTT
* *
487597 TTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACTTTGACGCTTTGGTGTC
131 TTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTC
* * * *
487662 GC-AGAAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTATTAAATAAGACAA
196 GCAAG-GAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* *
487726 ACATGAATGGTCATACTAATACCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCACAT
260 ACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCAT
* * * * ** *
487791 AATGATGTAGGATAATGATGCTTTGGTTTCTCAAGAAAATCTTTCTTCCAACCAATTATTATAAA
325 AAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTAT-AA
* * * * *
487856 AGTCTATGTTCGTGCCTCAAATAAGCCAAA-TAGTGATTCTAGTATTGTTCTTCATTCGTTTTGT
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAG-GATTCTAGTATTGATCTTCATTCATTTTGT
487920 GATTAGGCACTATAAACACATTA
453 GATTAGGCACTATAAACACATTA
* * * *
487943 TCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTTTGCACTTAT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC--TTTTCTTTGC-CCTAT
* * * * * * *
488008 GTTCCTTTACATCAAAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCGTAACACTCTCTATT
63 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* * *
488073 CTTTTCAAGATTGGGACCCAAAAACACATTACCTTGATTAGGATACACGACATTGGTGCTTTGGT
128 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGT
* * * *
488138 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTCTTGATAGAATCAAAGTTTACCTCTTAAATAAAAC
193 GTCGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * * * *
488203 AAACATGAATGGTCATAATATTCCCCATTCTTTTTGGGATTAGGCACCATATACATAGTCTTCTT
258 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTC
* * * ** * * **
488268 ATAGGGAAGCGTGATATTGATGCTTCAGTTTCTCAAGAATGCCTTTCTTTAGACCAATTATTATA
323 ATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* * * * * *
488333 AAGTCTATGTTCTTGCCTTAAATGAGCCAAACAAGGATTTTAGCATTGATCTTCATTCATTTTAT
388 AAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGT
* *
488398 GATTAGGCACAATAAACACGTTA
453 GATTAGGCACTATAAACACATTA
** * * *
488421 TCCTCATCCGGATAAATGATATTGATGATTTT-TTTTCTTGAAAATCTTTTCTTCGCCCTATTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
* * * *
488485 CCTTAAAATCCGAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTAACAATCTCTAATCT
66 CCTTAAAAT-CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * *
488550 TTTCAAGATTGGGACCCAAAAACACATTCCTTTCATTATGATACACGACATTGACGCGTTGGTGT
130 TTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGT
* * * * * *
488615 CGCAAGAAAAGCTTTGCTTTCCACCATTTTTTATAGAATCAAAGTTTGACTCTTAAATATGACAA
195 CGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* * **
488680 ACATTAATGGTCATACTAATCCTCATTCTTCTT-GGGATTAGGCACCATAAGTGTAGTCTTCTCA
260 ACATGAATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACGTAGTCTTCTCA
* *** * * * * *
488744 TAAGGATACCCCATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGTAA
324 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
* * * * *
488809 AGTCAAAGTTCGTGCCTCAAATGAGCAAAACATGGATTCTAGTATTGATCATCATTCATTTTGTT
389 AGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTG
* * * *
488874 ATTACGCCCTAAAAACACATTC
454 ATTAGGCACTATAAACACATTA
* * * * ** *
488896 TCCTCAATAGGATAAAAGATATTGACGATTTTCTTTTCATGAAAATGATTTCCTTGCCCTATTTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
*** * *
488961 CAAGAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAGCAATCTCCATTCTT
66 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTT
*
489026 TTCAAGATTGGGACCCAAAAACACATTCCCTTCATTCA-GATGCA--ACATTGATGCTTTGGTGT
131 TTCAAGATTGGGACCCAAAAACACATTCCCTTCATT-AGGATACACGACATTGATGCTTTGGTGT
* * * *
489088 CGCTAGAAAAGCTTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
195 CGCAAGGAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * *
489153 AACATGAATGGTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCA
259 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCA
* * * * *
489218 TAAGGATGCAGGATAATGATGCTTTGGTTTCTCAAGAAAAGCTTTCTTCCAACCCATTATTATAA
324 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTAT-A
* * * * *
489283 AAGTCTAAGTTCATGACTCAAATGAGCCAAACAAGGATTCTAGTATTGTTGC-TCATTCGTTTAG
388 AAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGAT-CTTCATTCATTTTG
* *
489347 TGATTAGGCACTATAAATATATTA
452 TGATTAGGCACTATAAACACATTA
* ** * *
489371 TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTCAAATCTTTTTTTTGCACTTATTT
1 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTT
* * *
489436 GCCTT-TAATCAAAGTTCATCTCTTAAATAAGA
65 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
489468 GATTGGGACC
Statistics
Matches: 5356, Mismatches: 822, Indels: 181
0.84 0.13 0.03
Matches are distributed among these distances:
462 14 0.00
463 117 0.02
464 231 0.04
465 18 0.00
466 4 0.00
467 1 0.00
468 1 0.00
470 6 0.00
472 1 0.00
473 48 0.01
474 715 0.13
475 1796 0.34
476 1552 0.29
477 439 0.08
478 130 0.02
479 281 0.05
480 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (475 bp):
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTT
TTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTC
GCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAA
CATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATA
AGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAG
TCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTGAT
TAGGCACTATAAACACATTA
Found at i:492333 original size:476 final size:475
Alignment explanation
Indices: 489467--499151 Score: 11170
Period size: 476 Copynumber: 20.3 Consensus size: 475
489457 CTTAAATAAG
* * *
489467 AGATTGGGACCCAAAAACACATTGCCTTCATTGGGATACACGACATTGATGCTTTAGTGTCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
*
489532 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* *
489597 AATGGTCATACTAATGCCCATTCTATTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
** * ** * *
489662 AACATGATATTCATGCTTCAGTTTCTGAAGAATA-GCTTTCTT-CAGACCATTTATTATAAAGTC
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAA-AGGCTTTCTTCCA-ACCAATTATTATAAAGTC
* * *
489725 TATGTTCGTGCCTTAAATGAGCCAAACAAGGATTCCAGTAATG---TTCATTCATTTTGTGATTA
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
*** * * * * *
489787 GGCACTACGGACAAATTAGCCTCATTAGGATGAAA-GATATTGATGACTTTCTTATCATGAAAAT
324 GGCACTATAAACACATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTTCATGGAAAT
*
489851 CTTTTCTTTGCCCTTATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
388 CTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * *
489916 TCATAACAATCTCTATTCATTTCA
452 TCGTAACAATCTCCATTCTTTTCA
* * * *
489940 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGACACAGGACATTGACGCTTTGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * *
490005 GAAAAGCTTTTCATTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATC
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * * *** *
490070 AATAGTCATACTAATCCCCATTCGTCTT-AGGATTAGGCACCTTAAGTGTATTCTTCTCATAAGG
131 AATGGTCATACTAATCCCCATTC-TTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* *** * * * ** * *
490134 ATACCCCATAATGATGCTTTGGTTTCTCTAGAAAGGCTTCCTTCCCGCCAATTTTTGTAAAGT-T
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCT
* * * * * * *
490198 AAAGTTCGTGCCTCAAATGTGCCAAACATGGATTCTAGTATTGATCATCATTCATTTTATTATTA
260 -ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * * * * *
490263 CGCCCTAAAAACACATTCTCCTTATTAGGATATAA-GATATTGAGGATTTTCTTTTCATGGAAAT
324 GGCACTATAAACACATTATCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTCATGGAAAT
** ** * *
490327 GATTTCCATGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
388 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
*
490392 CGTAGCAATCTCCATTCTTTTCA
453 CGTAACAATCTCCATTCTTTTCA
* * * * * *
490415 AGATTGGGACCCAAAAACTCAATT-CCTTCATTAGGATACAAGACTTTGATGCGTTGGTGTTGAA
1 AGATTGGGACCCAAAAACAC-ATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCA
* * *
490479 AGAAAAGCTTTTCATT-CACCATTTTTGATAGAGTCAAAGTTTGCCTTTTAAATAAGACAAACAT
65 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* ** * *
490543 GAGTGGTTGTACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAGT
130 GAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * *
490608 ATGTACGATAATGATGCCTTGGTTTCTCAAGAAAAGCTTTCTTCCAACCAATTATTATAAAAGTC
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTC
* * * *
490673 TATGTTCGTGCCTTAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCACTCGTTTTGAGATTA
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* *
490738 GGCACTATAAACACATTATCCTCGTTAGGATAAATGATATTGATGATTTTTTTTTCATGG-AATC
324 GGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC
* * * * * *
490802 TTTTCTTTGCACTTATTTTCCTTTAAATCAATGTTCAT-CTTGTAAGTAAGACATGCATCGATTC
389 TTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCT-TAAATAAGACAAGCATCGATTC
* *
490866 TCGTAACACTCTCTATTCTTTTCA
452 TCGTAACAATCTCCATTCTTTTCA
* ** * ** * * ** *
490890 AGATTAGGACTGAAAAACACATTCCTTTCATTATAATAAACGACATTGACGCAATGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * *
490955 GAAAAGCTTTT-TTTCCACCATTTTTGTTAGAATCAAAGTTTGACTCTTAAATAAGACAAATATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * *
491019 AATGGTCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATAAACGTAGTCTTCCCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * *
491084 T-CAATGATATTGACGCTTTGGTTTCT-AGTGAATGGCTTTCTTCCGACCAATTATTATAAAGTC
196 TGC-ATGATATTGATGCTTTGGTTTCTCA-AGAAAGGCTTTCTTCCAACCAATTATTATAAAGTC
* * * *
491147 TATGTTCGTGCCTCGAATGAGCCAAATAAGGATTCGAGTAATGTTCTTCATTCATTTTGTGATTA
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * * *
491212 GGCACTACAAACAAATTATCCTCATTAGGATGAAA-GATATTGATGACTTTCTTATCATGGAAAT
324 GGCACTATAAACACATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTTCATGGAAAT
* **
491276 CTTTTCTTTGCCCTTACTTAGCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
388 CTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
*
491341 TCGTAACAATCTCCATTCATTTCA
452 TCGTAACAATCTCCATTCTTTTCA
* * *
491365 GGATTGGGACCCAAAAACACATTCCTTTCATTAGGATACACGACATTGATGCTTTGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * * *
491430 GAAGAGCTTTTCATTCCACCATTTTTGATAGAATTAAAGTTTACCTCGTAAATAAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* **
491495 AATAGTCATACTAATCCCCATTCTTGTT-GGGATTAGGCACCATAAGTATAGTCTTCTCATAAGG
131 AATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * * * * * *
491559 ATACCCT-ATAATAATGCTTTGGTTTGTCAAGAAAGGCTTCCTTCCCACCAATTTTTGT-AATTC
195 AT-GCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTC
* * * * * * * * *
491622 TAAGTTCCTGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCATGAGTGATTTTGTTATTA
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * * * * * * *
491687 TGCCCTAAAAACACATTCTCCTCAATAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAATG
324 GGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC
* * * * *
491752 ATTTCCTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTT
389 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
491817 ATAGCAATCTCCACTCTTTTCA
454 GTAACAATCTCCATTCTTTTCA
* * * *
491839 AGATTGGGACCTAAAAACACATTCCCTTCATTAGGATACACGAC-TTGCATTCTTTGGTGTTGTA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTG-ATGCTTTGGTGTCGCA
* * * *
491903 AGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGCCACTTATATAAGACATACAT
65 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * * *
491968 GAATGGTCAAACTAATCCCTATTCTTTTCGGGATTACGCACCACAAACATAGTCTTCTCATAAGG
130 GAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * *
492033 ATGTAGGATAATGATGCTTTAGTTTCTCAAGAAAAGCATTCTTCCAACCAATTATTATAAAAGTG
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGT-
* * * * * *
492098 C-ATGTTGGTGCCTCAAATGAGCCAAACAAGGATGCTACTACTGTTCTTCATTCGTTTTATGATT
258 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
*
492162 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTAATGATTTTCTTTTCATGGAAAT
323 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* * * *
492227 GTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGATCATCCCTTGAATAAGACAAGCATCGATTCT
388 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
492292 CGTAACAATCTCCATTCTTTTCA
453 CGTAACAATCTCCATTCTTTTCA
* * * * * * *
492315 AGATTCGGACCCAAAAACATATTCTCTTCATTAGCAAACATGACATTGATGCTTTGGTGTGGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * *
492380 GACAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * * * * *
492445 AATGGTCATACTAATCCCCATTCTTTCCGGGACTAGGCACCGTAACCGTTGTCCTCTCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * *
492510 TCCAAGATATTGATGGTTTGGTTTCTCAAGAAAGGCTTTCTTCTAACCAATTATTATAAAGTCTA
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTA
* * * *
492575 TGTTCATGCCTTAAATGAGCCAAACATGGATTCTAGTATTTTTCTTCATTCATTTTGTGATTAGG
261 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGG
* * * * * * *
492640 CACT-TCAAACATATTATCCTCATTAGGATAAATTATATTAATGACTTTATTTTCTTTGAAATCT
326 CACTAT-AAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
** * * * *
492704 TTTCTTTGCTATTATTTCCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCTTCGAGTCTC
390 TTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
492769 GTAACAATCTCCATTCTTTTCA
454 GTAACAATCTCCATTCTTTTCA
* * ** * *
492791 AGATTAGGACCCAAAAACACATTCCCTTCATTAGGATACATGATGTTAATGCTTTGGTGTTGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * *
492856 G-AAAGCTTTTCCTTCCACCATTTTTGATAGAATAAAATTTTGCCTCTTAAAAAAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* *
492920 AATAGTCATACTAATCCCCATTCTTCTT-GGGATTAGGCACCATAAGCATAGTCTTCTCATAAGG
131 AATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* ** * * * * *
492984 ATACCCGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGTAAAGTCT
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCT
* * * * *
493049 AAGTTCGTGCCTTAAATGAGCCAAACATA-GATTCTAGTATTGATCATCATTCATTTTGTTATTA
260 ATGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * * * * * * *
493113 CGCCCTAAAAACACATTCTCCTGATTAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAATG
324 GGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC
* * * * * * * * *
493178 ATTTCCTTGCCCAATTTTCCATAAAATCAAATTTCATCCCTTGAATAAGACAAACATTGATTCCC
389 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
*
493243 ATAACAATCTCCATTC---TCA
454 GTAACAATCTCCATTCTTTTCA
* * * *
493262 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATAAACGACTTTGACGCTTTGGTGTCGCAT
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * *
493327 GAAAAGCTTTTCTTTCTACCAATTTTGATAGAATCAAAGTTTGCCTCTTAAAAAAGATAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * *
493392 AATGGTCATACTAATCCCCATTTTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCGTAATGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
** * * *
493457 TGCCGGATAATGATGCTTTGGTTTCTCAAGAAAAGCTTTCTTCCAACCAAATATTATAAAAGTCT
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTCT
* * * * * *
493522 ATGTTCCTGCCTTAAATGAGCCAAACAAGGATTCTATTATTATTCTTCACTCGTTTTGTGATTAG
260 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
* * **
493587 GCACTATAAACACATTATCCTCATTAAGATAAATGATATTGATAATTTTCTTTTCATTCAAATCT
325 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
* * * * * * * * * *
493652 TTTTTTTGCACTTATTTTCCTTTAAATCAAAATTCATCTCTTAAAAAAGACATGCATCAAATATC
390 TTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
493717 ATAACACTGTCTACTCTTTTCA
454 GTAACAATCTCCATTCTTTTCA
* * * * * *
493739 AGATTGGGACCTAAAAAGACAATACCTTCATTAGGATACACGACGTTGATGCTTTGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* *
493804 GAAAAGCTTTTCTTTCC-CCTGTTTTTGATAGAATCAAAGTTTGCCT-TTAAAATAAAACAAACA
66 GAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGCCTCTT-AAATAAGACAAACA
* ** *
493867 TGAATGGTCATACTAATCCCCATTCTATTCGGGATTAGGCGTCATAAACATAGTCTT-TCCAAAA
129 TGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT-CATAA
* ** * * ** * ** *
493931 GGAAGCATGATATTGATGCTTCAGTTCCTCAAGAATGGCTTTCTTCGGACCAATGAGCCAAACAA
193 GGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTA-TTATA-AA
* ** *
493996 GGATTCTA-GCATT-GAGCC-C-AATGAGCCAAACAATAAACTT-TAAGT-TCGTGCCTCAAATG
256 -G--TCTATG--TTCGTGCCTCAAATGAGCCAAACAA-GGA-TTCT-AGTAT--TG-TTC---T-
* ** * ** * *
494055 AGCCAAACAAGGATTCTAGCATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACGTTAT
306 --TCATTC----ATT-TTG---TGA--TT-AGGCA----CT-A-TA---------AACACATTAT
* * * *
494120 CCTCATTTGGATAAATGATATGGATGATTTTCTTTTCTTGGAAATCTTTTCTTTACCCTATTTTC
343 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
494185 CTTAAAATCTAAAGTTGATCTCTTAAAAAAGACAAGCATCGATTCTCATAACAATCTCCATTCTT
408 CTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTT
494250 TTCA
472 TTCA
* * *
494254 AGATTGGGACCCAAAAGCACATTGCCTT-ATTTAGGATACACGACATTGACGCTTTGGTGTCGCA
1 AGATTGGGACCCAAAAACACATTCCCTTCA-TTAGGATACACGACATTGATGCTTTGGTGTCGCA
* * * *
494318 AGAAAAGCTATTATTTCCACCCTTTTTGATAGAATCAAAGTTTGCCTCTTAAACAAGACAAACAT
65 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* ** *
494383 GAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGTGCCACAAACATAGTCCTT-TCATAAG
130 GAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGT-CTTCTCATAAG
* * * * *
494447 GAAGCATGATATTGATGCTCTAGTTTTTCAAGAATGGCTTTCTT-CAGACCAATTATTATAAAGT
194 GATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCA-ACCAATTATTATAAAGT
* * * * * * * * *
494511 CTAAGTTCGTACCTCAAAAGAGACAAACAGGGATTCCAGTATTGATCTGCATTCATTTAGTGATT
258 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
* *
494576 AAGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCTTGGAAAT
323 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* * * *
494641 CTTTTCTTTGCCTTATTTTCCATAAAATCAAAAGTTCATCCCTTAAAAAAGACAAGCCTCGATTC
388 CTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
** *
494706 TTATAACAATCTCCATTCTTTTGA
452 TCGTAACAATCTCCATTCTTTTCA
* * *
494730 AGATTGGGACCCAAAAACACATTGCCTTCTTTAGGATACACGACATTGACGCTTTGGTGTCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * *
494795 GAAAAGTTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * ** *
494860 AAGGGTCATACTAATCCCCATTCTTTTTGGGATTAGGTGCCATAAACATAGTCTTTTCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * *
494925 AGCATGATATTGATGCTTTAGTTTCTCAAGAATGGCTTTCTT-CAGACCAATTATTATAAAGTCT
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCA-ACCAATTATTATAAAGTCT
* * * * *
494989 AAGTTTGTGCCTCAAATGAGCCAAACAAGGTTTCTAGTATTGATCTTCATTCATTTTGTAATTAG
260 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
* *
495054 GCACTATAAACACATTATCCTTATTTGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
325 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
* * * *
495119 TTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAAAAAGATAAGAATTGATTCTC
390 TTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
*
495184 ATAACAATCTCCATTCTTTTCA
454 GTAACAATCTCCATTCTTTTCA
* *
495206 AGAATGGGACCCAAAAAACACATTCCCTTCATTAGGATACATGACATTG-TCGCTTTGGTG-C-C
1 AGATTGGGACCC-AAAAACACATTCCCTTCATTAGGATACACGACATTGAT-GCTTTGGTGTCGC
* *
495268 ATAGGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGCCTCTTAAATAAGGCAAA
64 A-A-GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAA
* * * *
495333 CATGAATGGTCATACTAATCCCCATTC-TTTCTAGGACTAGGCACCATAGACGCT-GTCTTCTCA
127 CATGAATGGTCATACTAATCCCCATTCTTTTC-GGGATTAGGCACCATAAAC-ATAGTCTTCTCA
* * * * * * *
495396 TATGGATCCATGATATTGTTGCTTTGGATTCTCAAGAAAGGCTTTGTTCCGACCAATTACTATAA
190 TAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAA
* * * * * * *
495461 AGTTTATGTTCGTGCCTCAAATAAGCCACATAAGGATTCTAGTATTGATCTTTATTCATTTTATG
255 AGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTG
* *
495526 ATTAGGCACTATAAACACATTATCCTCATTTGGATAAATGATATTGATGATTTTCTTTCCATGGA
320 ATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGA
* * * * * * *
495591 AATCTTTTTTTTGCCGTTATTTTCCTTTAAATCAAAGTTCATCCCTGAAATAAGATAAGTATCAA
385 AATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* *
495656 TTATCGTAACAATCTCCACTCTTTTCA
449 TTCTCGTAACAATCTCCATTCTTTTCA
* * * * * *
495683 AGATTGGGACCCTAAAACACTTTCCCTTCACTAGGATACGCGACATTGACGCTTTGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * *
495748 GAAAAGCTTTTCATTCCAACATTTTTGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * *** * *
495813 AATGGTCATACTAATCCCTATTCTTTTTGGGATTAGGCACCATAAGTGTATTCTTGTCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* ** ** * * * * *
495878 TACCCGATAAAGACGCTTTGGTTTCTTAAGAAAGGC-TTCTTTCCCACCAATTTTTGTAAAGTCT
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TTCCAACCAATTATTATAAAGTCT
* * * * * * *
495942 AAGTTCGTGCCTCAAATGAGCCAAACATGGATTCGAGTATTGATCATCATTCATTTTGTTATTAC
260 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
* * * * * **
496007 GCCCAAAAAACACATTCTCCTCATTAGGATAAATGATATTGAGGATTTTCTTTTCATGGAAATGA
325 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
* * * *
496072 TTTCCTTGCCCTATTTTTCATAAAATCAAGGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
390 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCG
*
496137 TAACAATCTCCATTCATTTCA
455 TAACAATCTCCATTCTTTTCA
* * * * * *
496158 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATAGACGACTTTGACGCTTTGATGTTGCAG
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * * ** *
496223 GAAGAGCTTTTCTTTCCACCTTTTTTCATAGAATCAAAGTTTGCCAGTTAAATTAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* *
496288 AAAGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAAGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * *
496353 TGCAGGATAATGATGCTTGGGTTTCTCAAGAAAAGCTTTCTTCCTACCAATTATTATAAAAGTCT
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTCT
*
496418 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTT-TTCATTCCTTTTGTGATTAG
260 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAG
* *
496482 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTGTCATTGAAATCT
325 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
* * * * * **
496547 TTTTTTTGCACTTATTTTCCTTTAAATCAAAGTTCATCTCTTAAAAAAGACGTGCATCGATTCTC
390 TTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * *
496612 GCAACATTCTCTATTCCTTTCA
454 GTAACAATCTCCATTCTTTTCA
* * * * *
496634 AGATTGGGACACAAAAACACTTTGCCTTCATTATGATACACGACATTGATGCTTTGGTGTCACAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * *
496699 GAAAAGCTTTCCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * * * * *
496764 AATAGTCATACTAATCCCTATT-TTGCTCGGGATTAGGCGCTATAAACATAGTCTTCTCATAAAG
131 AATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* ** *
496828 AAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTT-CAGACCAATTATTATAAAGTC
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCA-ACCAATTATTATAAAGTC
* * * *
496892 TAAGGTCGTGCCTCAAATGAGCCAAAC-AGGAATTCTAGCATTGATCTTCATTCATTTTGTGATT
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGG-ATTCTAGTATTGTTCTTCATTCATTTTGTGATT
* * * *
496956 AGGCACTATAAACACGTTATCCTCGTTTGGATAAATGATATTGATGATTTTCTTTTCTTGGAAAT
323 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* * * *
497021 CTTTTTTTTGTCCTATTTTCCTTAAAATCTAAAGTTCATCCCCTAAA-AGAGACAAGCATCAATT
388 CTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATA-AGACAAGCATCGATT
* *
497085 CTCATAACAACCTCCATTCTTTTCA
451 CTCGTAACAATCTCCATTCTTTTCA
* * * * * * *
497110 AGATTGGGACCCAAAAACACATTCCCTTCATTATGATGCATGACATTGACG-TGTTGGTATTGAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCT-TTGGTGTCGCA
* * * * *
497174 AGAAATA-TTTTTCTTTCTACAATTTTTGATAGAATCAAAGTTTGACTCTTAAACAAGACAAACA
65 AGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* * * * * *
497238 TGAATGGTCATACTAATCCCCATTGTTTTCAGGAATAGGCACCATAAACGTAGTCTTATCAAAAG
129 TGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * * * * *
497303 GATCCAAGATTTTGATGCTTTGGTTTCTTATGAATGGCTTTCTTCCGACGAATTATTATAAAGTT
194 GATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTC
*** *
497368 TATGTTCACACCT-AGAATGAGCAAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
259 TATGTTCGTGCCTCA-AATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATT
* * * *
497432 AGGCACTATATACAAATTATCCTCATTAGGATAAATGATATTGATGACTTTCTTATCATGGAAAT
323 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* *
497497 CTTTTCTTTGCCCTTATTTTGCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGATTC
388 CTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * *
497562 TCGTAATAATCTCTATTCATTTCA
452 TCGTAACAATCTCCATTCTTTTCA
* * * *
497586 AGATTGGGACCCAAATACACATTCACTTCATTAGGATACACGACATTTACGCTTTGGTGTCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* *** * *
497651 GAAAAGCTTTTCATTCCATTGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAAAC-AA-ATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT-
* * **
497714 GAATAGTCATACTAATCCACATTCTTCTT-GGGATTAGGCACCATACGCATAGTCTTCTCATAAG
130 GAATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * ** * * *
497778 GGTAC-TCGATAATGATGCTTTGATTTCTCAGGAAAGGCTTTCTTCCCGCCAATTTTTGTAGAGT
194 GATGCAT-GATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGT
* * * * * *
497842 CTAAGTTTGTGCTTCAAATGAGCCAAACATA-GATTCTAGTATTGATCATCATTCATTTTGTTAT
258 CTATGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTATTGTTCTTCATTCATTTTGTGAT
* * * * * * * *
497906 TATGCCCTAAAAAAACATTCTCCTTATTAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAA
322 TAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAA
** * *
497971 TGATTTCCTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
387 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* *
498036 TCGTAGCAATCTCCATTCCTTTCA
452 TCGTAACAATCTCCATTCTTTTCA
* ** *
498060 AGATTGGGACCCAAAAACACAATCCCTTCATTAGGATACTTGACATTGATACTTTGGTGTCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
*
498125 GAAAAGTTTTTCTTTCCA-CAGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
66 GAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* **
498189 GAATGGTCATACTAATCCCCATTCTTTTCAGGATTAGGTGCCATAAACATAGTCTTCTCATAAGG
130 GAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * **
498254 AAGCACGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAAGTC
195 ATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTC
* * *
498319 TATGTTCGTGCCTCAAATTAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTA
259 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTA
* * * **
498384 GGCACTACAAAAACATTATCCTTC-TTAGGATAAATGATATTTATGATTTTCTTTTCATTAAAAT
324 GGCACTATAAACACATTATCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* * * * *
498448 CTTTT-TTTTCCACATATTTTCCTTTAAATCAAAGTTTATCTCTTAAATAAGACATGCATCGATT
388 CTTTTCTTTGCC-C-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * *
498512 CTCATAACACTCTCTATTCTTTTCA
451 CTCGTAACAATCTCCATTCTTTTCA
* * * *
498537 AGATTGGGACACAAAAACACAATGCCTTCATTAGGATACACGACATTGATGTTTTGGTGTCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* * *
498602 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAAACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
* * *
498667 AATGGTCATACTAAT-CCCATTCTTTTTGGGATTAGGCGCCATAAACATAGTCCTCTCATAAGGA
131 AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * ** * * *
498731 AGCATGATATTGTTGCTTCAGTTTCTCGAGAATGGCTTTCTT-CAGACCAATTATTATAAATTCT
196 TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCA-ACCAATTATTATAAAGTCT
* *** * * * * * *
498795 AAGTTCGTATTTCAAAAGAGACAAATAGGGATTCTAGTATTGATT-TGCATTCATTTAGTGATTA
260 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG-TTCTTCATTCATTTTGTGATTA
* * *
498859 AGCACTATAAACATATTATCCTCATTAGGATAAATGATATTGATGATGTTCTTTTCATGGAAATC
324 GGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC
* * * ** *
498924 TTTTCTTTACCTTATTTTCCATAAAATCAAAAGTTCATCATTTAAAAAAGACAAGCATCGATTCT
389 TTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* *
498989 CATAACAATCTCCCTTCTTTTCA
453 CGTAACAATCTCCATTCTTTTCA
* * * * **
499012 AGATTGGGACCCAAAAACACATTGCCTGCTTTAGGATACACGACATTGACGCTTTGGCATCGCAA
1 AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
* *
499077 GAAAAGTTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATG
66 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
499142 AATGGTCATA
131 AATGGTCATA
499152 AGGATGCACG
Statistics
Matches: 7786, Mismatches: 1260, Indels: 330
0.83 0.13 0.04
Matches are distributed among these distances:
471 62 0.01
472 165 0.02
473 377 0.05
474 862 0.11
475 2203 0.28
476 2804 0.36
477 836 0.11
478 24 0.00
479 15 0.00
480 4 0.00
481 11 0.00
482 3 0.00
483 2 0.00
485 2 0.00
486 2 0.00
487 1 0.00
489 3 0.00
491 3 0.00
492 2 0.00
493 2 0.00
494 5 0.00
497 6 0.00
498 3 0.00
499 2 0.00
500 3 0.00
502 3 0.00
504 1 0.00
505 2 0.00
506 2 0.00
508 2 0.00
509 4 0.00
510 12 0.00
511 4 0.00
512 12 0.00
513 2 0.00
514 19 0.00
515 313 0.04
516 8 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
AGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAA
GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
AATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTA
TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT
TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
AACAATCTCCATTCTTTTCA
Found at i:494022 original size:33 final size:33
Alignment explanation
Indices: 493980--494079 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 33
493970 TTTCTTCGGA
493980 CCAATGAGCCAAACAAGGATTCTAGCATTGAGC
1 CCAATGAGCCAAACAAGGATTCTAGCATTGAGC
** *
494013 CCAATGAGCCAAACAATAAACTT-TA--AGTTCGTGC
1 CCAATGAGCCAAACAA-GGA-TTCTAGCA-TT-GAGC
494047 CTCAAATGAGCCAAACAAGGATTCTAGCATTGA
1 C-C-AATGAGCCAAACAAGGATTCTAGCATTGA
494080 TCTTCATTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
32 1 0.02
33 18 0.35
34 9 0.17
35 7 0.13
36 16 0.31
37 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (33 bp):
CCAATGAGCCAAACAAGGATTCTAGCATTGAGC
Found at i:499514 original size:424 final size:424
Alignment explanation
Indices: 498752--499574 Score: 973
Period size: 424 Copynumber: 1.9 Consensus size: 424
498742 GTTGCTTCAG
* * * * *
498752 TTTCTCGAGAATGGCTTTCTTCAGACCAATTATTATAAATTCTAAGTTCGTATTTCAAAAGAGAC
1 TTTCTCAAGAAAGGCTCTCTTCAGACCAATTATTATAAAGTCTAAGTTCGTATCTCAAAAGAGAC
* * *
498817 AAATAGGGATTCTAGTATTGATTTGCATTCATTTAGTGATTAAGCACTATAAACATATTATCCTC
66 AAACAGGGATCCTAGTATTGATTTGCATTCATTTAGTGATTAAGCACTATAAACACATTATCCTC
* * *
498882 ATTAGGATAAATGATATTGATGATGTTCTTTTCATGGAAATCTTTTCTTTACCTTATTTTCCATA
131 ATTAGGATAAATGATATTGATGATGTTCTTTACATGGAAATCTTTCCCTTACCTTATTTTCCATA
* * *
498947 AAATCAAAAGTTCATCATTTAAAAAAGACAAGCATCGATTCTCATAACAATCTCCCTTCTTTTCA
196 AAATCAAAAGTTCATCACTTAAAAAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCA
* * * * *
499012 AGATTGGGACCCAAAAACACATTGCCTGCTTTAGGATACACGACATTGACGCTTTGGCATCGCAA
261 AGATTGAGAACCAAAAACACATTCCCTGCTTTAAGATACACGACATTGACGCTCTGGCATCGCAA
*
499077 GAAAAGTTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATG
326 GAAAAGTTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTACCTCTTAAATAAGACAAACAT-
499142 AATGGTCATAAGGATGCACGATAATGACACTTTAT
390 AATGGTCATAAGGATGCACGATAATGACACTTTAT
* * * * * *
499177 TTTCTCAAGAAAGGCTCTCTTCCGACCAATTGTTATAAAGTCTATGTTCGTGTCTCAAATGAGCC
1 TTTCTCAAGAAAGGCTCTCTTCAGACCAATTATTATAAAGTCTAAGTTCGTATCTCAAAAGAGAC
* * * * *
499242 AAACATGGATCCTAGTATTGATCTT-CATTCATTTTA-TTATTAGGCACTGA-AAACACATTCTT
66 AAACAGGGATCCTAGTATTGAT-TTGCATTCA-TTTAGTGATTAAGCACT-ATAAACACATTATC
* * *
499304 CTCATTAGGATAAAAT-ATATTGATGATTTTCTTTACATGGAAATGTTTCCCTT-GCTCTAGTTT
128 CTCATTAGGAT-AAATGATATTGATGATGTTCTTTACATGGAAATCTTTCCCTTACCT-TA-TTT
* ** * * * * *
499367 T-CTTAAGGTC-AAAGTTCATCCCTTGAATAAGATAACCATCGATTCTCGTAACAATCTCCATTC
190 TCCATAAAATCAAAAGTTCATCACTTAAAAAAGACAACCATCGATTCTCATAACAATCTCCATTC
* * * * ** *
499430 TTTTCAAGATTTAGAACTAAAAACACTTTCCCAT-CTTTACAG-TGCTTGACATTGATGCTCTGG
255 TTTTCAAGATTGAGAACCAAAAACACATTCCC-TGCTTTA-AGATACACGACATTGACGCTCTGG
** * * * * *
499493 TGTTGCAAGAAAA-TATTTTCTTTCCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAAATAAG
318 CATCGCAAGAAAAGT-TTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTACCTCTTAAATAAG
*
499557 ACAAACATTATGGTCATA
382 ACAAACATAATGGTCATA
499575 CGAATCTCCA
Statistics
Matches: 332, Mismatches: 57, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
423 10 0.03
424 156 0.47
425 151 0.45
426 15 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (424 bp):
TTTCTCAAGAAAGGCTCTCTTCAGACCAATTATTATAAAGTCTAAGTTCGTATCTCAAAAGAGAC
AAACAGGGATCCTAGTATTGATTTGCATTCATTTAGTGATTAAGCACTATAAACACATTATCCTC
ATTAGGATAAATGATATTGATGATGTTCTTTACATGGAAATCTTTCCCTTACCTTATTTTCCATA
AAATCAAAAGTTCATCACTTAAAAAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCA
AGATTGAGAACCAAAAACACATTCCCTGCTTTAAGATACACGACATTGACGCTCTGGCATCGCAA
GAAAAGTTTTTCTTTCCACCATTTTTGAGAGAATCAAAGTTTACCTCTTAAATAAGACAAACATA
ATGGTCATAAGGATGCACGATAATGACACTTTAT
Found at i:501195 original size:475 final size:476
Alignment explanation
Indices: 500297--502790 Score: 2603
Period size: 475 Copynumber: 5.3 Consensus size: 476
500287 TTCATTGTAA
* * *
500297 TCCTTTAAATCAAAGTTCATCCCATAAATAAGACAACCTTCGATTCTCATAACAATCTCCATTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * *
500362 TTCCAAGAATAGG-ACCCAAAACTACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTG
66 TTTCAAGATTGGGAACCAAAAAC-ACATTCCCATCATTAGGATACATGACATTGACGCTCTGGTG
* * * *
500426 TCGCAAGAAAA-GCCTTTT-TTTCCACCGTTTTTGATAGAAACAAAGTTTGCCTATTAAATAGGA
130 TCGCAAGAAAATG-CTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * *
500489 CAAATATGAATGGTCATACTAATC-CCTATTCTTTTTAGGATTAGGCACCATAAACGTGGTCTTC
194 CAAACATGAATGGTCATACGAATCTCC-ATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTC
* * ** * * *
500553 TCATAATGATGCACGATAATGACACCTTATTTTCTCAAGAAAGGCTTTCTTCCGACCAATTGTTA
258 TCATAAGGATGCATGATAATGATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* * ** * * *
500618 TAAAGTCTATCTTCGTGTCTCAAATGAGCCAAACATGGA-TCATAGTATTGATCTTCATTCATTT
323 TAAAGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTC-TAGTATTGTTCTTCATTCGTTT
* * * * * * *
500682 TGTTATTAAGCACT-GAAA-ACACTTTCTGCTCATTAGGATAAAATATATTGATGATTTTCTTTG
387 TGTGATTAGGCACTATAAAGACAGTATC--CTCATTAGGATAAAAGATATTGATGATTTTCTTTT
* * **
500745 CATGGAAATGTTTTCCTTGCCCTATTT
450 CATGGAAATCTTTTCTTTGCAATATTT
* * * * *
500772 TTCTTAAAATCAAAGTTCATACCTTGAATAAGACAACCATCGATTCTCGTAACAATCTCCACTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
** * * * * * *
500837 TTTCAAGATTAAGAACTAAAAACACTTTCCCATC-TTGATGG-TGCTTAACATTGATGCTCTGGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCATCATT-A-GGATACATGACATTGACGCTCTGGT
* * * *
500900 GTTGCAAGAAAATG-TTTTCTTTCCACCGTTTTTTAGGGAATCAAAGATTGCCTCTTAAATAAGA
129 GTCGCAAGAAAATGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * * * **
500964 CAAACATTAACGGTCATACGAATCTCCATTCTTTTTAGGACTAGGCACCATAAATGTAACCTTCT
194 CAAACATGAATGGTCATACGAATCTCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCT
* ** * * * *
501029 CATAAGGATGCATGAT-ATCGATGTTTTGGATTGTCAAGAAAGGCTTTCTTCCAATCAATTACTA
259 CATAAGGATGCATGATAAT-GATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* * * *
501093 TAAAGTCTAAGTTCGTGCCTCAAATGAGCGACGCAAGGACTCTAGTATTGTTCTTCATTTGTTTG
323 TAAAGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTT
* * *
501158 GTGATTAGGCACTATAAAGACAGTATCCTCTTTAGGATAAAAGATACTGATGATTTTCTTTTCGT
388 GTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
* * *
501223 AGAAATCTTTTTTTTTGTAATTATTT
453 GGAAATC-TTTTCTTTGCAA-TATTT
* * * ** * *
501249 TCCTTTAAACCAAGGTTCATCCCTTAAATAAGACAAGCATTAATTCTCTTAACAATCTCCGTTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
* ** * * * *
501314 TTTCAAGATTGTGTTCCAAAAACACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGACGCTCTGGTGT
* * *
501379 CGCAGGAAAA-GCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAATG-C
131 CGCAAGAAAATGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAA-GAC
* * * * * *
501442 AAA-GTGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCAACATAAACGTTGTCTTCTC
195 AAACATGAATGGTCATACGAATCTCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTC
* * * *
501506 AGAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATA
260 ATAAGGATGCATGATAATGATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* * * * ** * * *
501571 AAGTCTATGTCCATACGTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGG
325 AAGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTGT
* *
501636 GATTAGGTACTAT-AAG-CAATTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATG
390 GATTAGGCACTATAAAGAC-AGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATG
501699 G------------T---A-A---
454 GAAATCTTTTCTTTGCAATATTT
* * *
501703 TCCTTTAAATCAAAGTTCATCCCATAAATAAGACAACCTTCGATTCTCATAACAATCTCCATT-T
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * * *
501767 TTCCAAGAATAGGACCCAAAACCACATTCCCTTCGTTAGGATACATGACATTGACGCTTTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGACGCTCTGGTGT
* * * *
501832 CGCAAGAAAA-GCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTGTTAAATAGGACA
131 CGCAAGAAAATGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * *
501896 AATATGAATGGTCATACTAATC-CCTATTCTTTTTAGGATTAGGCACCATAAACGTGGTCTTCTC
196 AACATGAATGGTCATACGAATCTCC-ATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTC
** * * * *
501960 ATAAGGATGCATGATAATGACACCTTATTTTCTCAAGAAAGGCTTTCTTCCGACCAATTGTTATG
260 ATAAGGATGCATGATAATGATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATA
* ** * * *
502025 AAGTCTATGTTCGTGTCTCAAATGAGCCAAACATGGA-TCATAGTATTGATCTTCATTCATTTTG
325 AAGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTC-TAGTATTGTTCTTCATTCGTTTTG
* * * * * * *
502089 TTATTAAGCACT-GAAA-ACACTTTCTGCTCATTAGGATAAAATATATTGATGATTTTCTTTGCA
389 TGATTAGGCACTATAAAGACAGTATC--CTCATTAGGATAAAAGATATTGATGATTTTCTTTTCA
* * **
502152 TGGAAATGTTTTCCTTGCCCTATTT
452 TGGAAATCTTTTCTTTGCAATATTT
* * * * * * *
502177 TTCTTAAAATCAAAGTTCATACCTTGAATAAGACAACCATCGATTCCCATAACAATCTCCACTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
* * * ** * * * *
502242 TTTCAAGATTGAGAACTAAAAACACTTTCCCATC-TTGACGG-CGCTTGACATTAATGCTCTAGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCATCATT-A-GGATACATGACATTGACGCTCTGGT
* * *
502305 GTTGCAAGAAAAT-CTTTTCTTTCCACCGTTTTTGAGGGAATCAAAGATTGCCTCTTAAATAAGA
129 GTCGCAAGAAAATGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * * * *
502369 CAAAGATTAACGGTCATACGAATCTCCATTCTTTTTAGGACTAGGCACCATAAATGTAGTCTTCT
194 CAAACATGAATGGTCATACGAATCTCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCT
* ** * * *
502434 CATAAGGATGCATGAT-ATCGATGTTTTGGATTATCAAGAAAGGCTTTCTTCCAACCAATTACTA
259 CATAAGGATGCATGATAAT-GATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTA
* * * *
502498 TAAAGTCTAAGTTCGTGCCTCAAATGAGCGACGCAAGGACTCTACTATTGTTCTTCATTTGTTTT
323 TAAAGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTT
* * * *
502563 GTGATTAAGCACTATAAAGACAGTATCCTCTTTAGGATAAAAGATACTGATGATTTTCTTTTCGT
388 GTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
*
502628 GGAAATCTTTTTTTTGCAATTATTT
453 GGAAATCTTTTCTTTGCAA-TATTT
* * *
502653 TCCTTTAAATCAAGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
502718 TTTCAAGATTGGGATCCAAAAACACATTGCCATCATTAGGATACAAGACATTGACACTTTGGGGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGACGCTCTGGTGT
502783 CGCAAGAA
131 CGCAAGAA
502791 GAAGACAACC
Statistics
Matches: 1650, Mismatches: 312, Indels: 113
0.80 0.15 0.05
Matches are distributed among these distances:
452 1 0.00
453 123 0.07
454 226 0.14
455 38 0.02
457 1 0.00
459 1 0.00
462 1 0.00
467 1 0.00
471 1 0.00
474 68 0.04
475 701 0.42
476 311 0.19
477 174 0.11
478 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCT
TTTCAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGACGCTCTGGTGT
CGCAAGAAAATGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACA
AACATGAATGGTCATACGAATCTCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCA
TAAGGATGCATGATAATGATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAA
AGTCTATGTTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTGTG
ATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATGGA
AATCTTTTCTTTGCAATATTT
Found at i:506465 original size:950 final size:951
Alignment explanation
Indices: 499147--511022 Score: 12264
Period size: 950 Copynumber: 12.5 Consensus size: 951
499137 ACATGAATGG
** * * * * *
499147 TCATAAGGATGCACGATAATGACACTTTATTTTCTCAAGAAAGGCTCTCTTCCGACCAATTGTTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* * * * *
499212 TAAAGTCTATGTTCGTGTCTCAAATGAGCCAAACATGGATCCTAGTATTGATCTTCATTCATTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * ** * **
499277 ATTATTAGGCACTGAAAACACATTCTTCTCATTAGGATAAAATATATTGATGATTTTCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * * *
499342 GGAAATGTTTCCCTTGCTC-TAGTTTTCTT-AAGGTCAAAGTTCATCCCTTGAATAAGATAACCA
196 GGAAATGTTTTCCTTGC-CATACTTTCCTTCAA-ATCAAAGTTCATCCCTTGAATAAGACAACCA
* *
499405 TCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTTAGAACTAAAAACACTTTCCCATCTTTAC
259 TCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAG
* * * * * * *
499470 AGTGCTTGACATTGATGCTCTGGTGTTGCAAGAAAATATTTTCTTTCCACCGTTTTTTAGGGAAT
324 GGTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAAT
*
499535 CAAAGTTTGCCTCTTAAATAAGACAAACAT-TATGGTCATACGAATCTCCATTCTTTTT-AGGAT
389 CAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATT-TTTTTAAGGAT
* * * *
499598 TAGGCACCATAAAGGTAGTATTCTCATAAGGATGCATGATATTGATGCTTTGGATTCACAAGAAA
453 TAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAA
* * * * * * * *
499663 GGCTTTTTTCCAGCCAATTACGATAAAGTCTAAGTTCGTGCCTCAAATGAGCGACGCAAGGACTC
518 GTCTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTC
* * * *
499728 TAGTATTGTTCTTCATTTGTTTTGTGATTAGGCACTACAAAGACAATATCCTCTTTAGGATAAAA
583 TAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAA
*
499793 GATACTGATGATTTTCTTTTTGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTT
648 GATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTT
* *
499858 CATCTCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTACAAGATTGGGATCC
713 CATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
* *
499923 AAAAACACATTGCCTTCATTAGGATACAAGACAATGACACTTTGGTGTCGCAAGAAAAGCTTTTC
778 AAAAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTC
* * **
499988 TTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAATACAAATGTGAATGGTCATACT
843 TTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACT
* *
500053 AATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTTGTCTTC
908 AATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
500097 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* * ** * *
500162 TAAAGTCTATGTCCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
** * * * * *
500227 GGGATTAGGTACT-ATAAGCACATTATCCTCATTAGGATAAAAGATATTG----ATG-ATTT-C-
131 GTTATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACA
* * * * * * *
500284 -------CTTTTCATTG---TA--ATCCTTTAAATCAAAGTTCATCCCATAAATAAGACAACCTT
195 TGGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACCAT
* * * * ** * * *
500337 CGATTCTCATAACAATCTCCATTCTTTCCAAGAAT-AGGACCCAAAACTACATTCCCTTCATTAG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAAC-ACTTTCCCATCTTTAG
* * ** * * * * * **
500401 GATACACGACATTGACGCTTTGGTG-TCGCAAGAAAAGCCT-TT-TTTTCCACCGTTTTTGATAG
324 GGTTCTTGACATTGATGCTCTGGTGCT-GCAAGGAAA-TCTGTTCTTTT-CACCGTTTTTTAGGG
* * * * *
500463 AAACAAAGTTTGCCTATTAAATAGGACAAATATGAATGGTCATACTAATC-CCTATTCTTTTT-A
386 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCC-ATT-TTTTTAA
* * * * * ** * ***
500526 GGATTAGGCACCATAAACGTGGTCTTCTCATAATGATGCACGATAATGACACCTTATTTTCTCAA
449 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAA
* * * ** *** * ** ** *
500591 GAAAGGCTTTCTTCCGACCAATTGTTATAAAGTCTATCTTCGTGTCTCAAATGAGCCAAACATGG
514 GAAAGTCTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGG
* ** ** * * * *
500656 A-TCATAGTATTGATCTTCATTCATTTTGTTATTAAGCACT-GAAA-ACACTTTCTGCTCATTAG
579 ACTC-TAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATC--CTCATTAG
* * * * * ** ** * *
500718 GATAAAATATATTGATGATTTTCTTTGCATGGAAATGTTTTCCTTGC-CCTATTTTTCTTAAAAT
641 GATAAAAGATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAAT
* * * * * *
500782 CAAAGTTCATACCTTGAATAAGACAACCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATT
706 CAAGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
** * * * * * * *** ** * *
500847 AAGAACTAAAAACACTTTCCCATC-TTGATGG-TGCTTAACATTGATGCTCTGGTGTTGCAAGAA
771 GGGATCCAAAAACACATTGCCTTCATT-A-GGATACAGGACATTGACACTTTGGTGTCGCAAGAA
* ** * *
500910 AATG-TTTTCTTTCCACCGTTTTTTAGGGAATCAAAGATTGCCTCTTAAATAAGACAAACATTAA
834 AA-GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAA
* * * * * **
500974 CGGTCATACGAATCTCCATTCTTTTTAGGACTAGGCACCATAAATGTAACCTTC
898 TGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
* * ** * * ** * *
501028 TCATAAGGATGCATGAT-ATCGATGTTTTGGATTGTCAAGAAAGGCTTTCTTCCAATCAATTACT
1 TCATAAGGATGCACGATAAT-GATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATT
* * * * * *
501092 ATAAAGTCTAAGTTCGTGCCTCAAATGAG-C-GACGCAAGGACTCTAGTATTGTTCTTCATTTGT
65 ATAAAGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTCATTCGT
* * * * * * * * ** * **
501155 TTGGTGATTAGGCACT-ATAAAGACAGTATCCTCTTTAGGATAAAAGATACTGATGATTTTCTTT
128 TTTGTTATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTT
* * * * ** ** * * * * *
501219 TCGTAGAAATCTTTTTTTTTGTAATTATTTTCCTTTAAACCAAGGTTCATCCCTTAAATAAGACA
192 ACATGGAAAT-GTTTTCCTTGCCA-TACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACA
* ** * * * ** * * * * *
501284 AGCATTAATTCTCTTAACAATCTCCGTTCTTTTCAAGATTGTGTTCCAAAAACACATTGCCTTCA
255 ACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCT
* * * ** * * * * * *
501349 TTAGGATACATGACATTGACACTTTGGTG-TCGC-AGGAAAAGCTTTTCTTTCCATCGTTTTTGA
320 TTAGGGTTCTTGACATTGATGCTCTGGTGCT-GCAAGG-AAATCTGTTCTTTTCACCGTTTTTTA
** * * *
501412 TAGAATCAAAGTTTGCCTCTTAAATAATG-CAAA-GTGAATGGTCATACTAATCCCCATTCTTTT
383 GGGAATCAAAGTTTGCCTCTTAAATAA-GACAAACATGAATGGTCATACGAATCTCCATT-TTTT
* * * * * * * **
501475 T-GGGATTAGGCAACATAAACGTTGTCTTCTCAGAAGGATGCACGATAATGATGCTTTGTTTTCT
446 TAAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCT
* * ** * * * **
501539 CAAGAAAGACTTTCTTCTGACCAATTATTATAAAGTCT-ATGTCCA-TACGTCAAATGAGCCAAA
511 CAAGAAAGTCTTTGTTCCAACCAATTACTATAAAGTCTAAGGT--AGTACCTCAAATGAGCCACG
* * * * * *
501602 CAAGGATTCCAGTATTGTTCTTCATTCGTTTTGGGATTAGGTACTAT-AAG-CAATTATCCTCAT
574 CAAGGACTCTAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGAC-AGTATCCTCAT
* *
501665 TAGGATAAAAGATATTGATGATTTTCTTTTCATGG------------T---A--A---TCCTTTA
638 TAGGATAAAAGATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTA
* * * * *
501710 AATCAAAGTTCATCCCATAAATAAGACAA-CCTTCGATTCTCATAACAATCTCCATT-TTTCCAA
703 AATCAAGGTTCATCCCTTAAATAAGACAAGCATT-GATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * * * *
501773 GAATAGGACCCAAAACCACATTCCCTTCGTTAGGATACATGACATTGACGCTTTGGTGTCGCAAG
767 GATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAG
* * * *
501838 AAAAGCTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTGTTAAATAGGACAAATATGA
832 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * *
501903 ATGGTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACGTGGTCTTC
897 ATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
* ** * * * * *
501958 TCATAAGGATGCATGATAATGACACCTTATTTTCTCAAGAAAGGCTTTCTTCCGACCAATTGTTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* * * * *
502023 TGAAGTCTATGTTCGTGTCTCAAATGAGCCAAACATGGA-TCATAGTATTGATCTTCATTCATTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTC-TAGTATTGATCTTCATTCGTTT
* * * ** * ** *
502087 TGTTATTAAGCACTGAAAACACTTTCTGCTCATTAGGATAAAATATATTGATGATTTTCTTTGCA
130 TGTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACA
* * * * *
502152 TGGAAATGTTTTCCTTGCCCTATTTTTCTTAAAATCAAAGTTCATACCTTGAATAAGACAACCAT
195 TGGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACCAT
* * * * *
502217 CGATTCCCATAACAATCTCCACTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTGACG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
** * * * * * * *
502282 GCGCTTGACATTAATGCTCTAGTGTTGCAAGAAAATCTTTTCTTTCCACCGTTTTTGAGGGAATC
325 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATC
* * * * *
502347 AAAGATTGCCTCTTAAATAAGACAAAGATTAACGGTCATACGAATCTCCATTCTTTTT-AGGACT
390 AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATT-TTTTTAAGGATT
* * *
502411 AGGCACCATAAATGTAGTCTTCTCATAAGGATGCATGATA-TCGATGTTTTGGATTATCAAGAAA
454 AGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTC-ATGCTTTGGATTCTCAAGAAA
* * * * * *
502475 GGCTTTCTTCCAACCAATTACTATAAAGTCTAAGTTCGTGCCTCAAATGAGCGACGCAAGGACTC
518 GTCTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTC
* * * *
502540 TACTATTGTTCTTCATTTGTTTTGTGATTAAGCACTATAAAGACAGTATCCTCTTTAGGATAAAA
583 TAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAA
502605 GATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTT
648 GATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTT
502670 CATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
713 CATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCC
* * *
502735 AAAAACACATTGCCATCATTAGGATACAAGACATTGACACTTTGGGGTCGCAAGAAGAAGACAAC
778 AAAAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAA-AAG-----
** * * * * * *
502800 CATCGATTTTCGTAACAATCTTCATTCTTTTCAAGATTGGGAACTAAAAACACTTTCCCATCTTT
837 ---C--TTTTC-TTTCCA-C--C-GT-TTTT---GA-T-AGAA-T--CAA-AGTTTGCC-TC-TT
** ** *** ** ** ** *** ** ** *** *
502865 AGGGTGCTTGACATTGATGCTCTGGTGTTGCAAGAAAATCTTTTCTTTCCACCGTTTTTGAGGGA
880 A-AAT--AAGACAAACATG-AATGGTCAT--ACTAATCCCCATTCTTT---TTGGGATT-AGGCA
*
502930 --ATCAAA-GT--T-TGCC
935 CCAT-AAATGTAGTCT-TC
* * * ** ** * ** * **** * * ** *** *
502943 TCTTAA--AT--AAGACAAACATGAATGGTCAT-ACAA-ATCTCCATTTTTTTTGGATTAGGCAC
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGAC-TTTCTTCT-GACCAATTAT
* * ** * * * *
503002 CATAAA--C-ATAG-TC-T-TCTCATAGGGATGCATGATATTCATGCAAGGTCTCTAGTATTGTT
64 TATAAAGTCTAT-GTTCGTGCCTCA-AATGA-GCCT-A-A--CCTG---GAT-TCTAGTATTGAT
* ** ** * * * * * *
503061 CTTCATTTGTTTTGAGATTAGGCACT-ATAAAGGCAGTATCCTCATTAGGATAAAAGATACTAAT
118 CTTCATTCGTTTTGTTATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAATATATTGAC
* * ** * * * ** * * * * *
503125 GATTTTCTTTCCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCATCCCTTA
182 AAATGCCTTTACATGGAAATGTTTTCCTTGCCA-TACTTTCCTTCAAATCAAAGTTCATCCCTTG
* * * * * *
503190 AATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAAAACACA
246 AATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACT
* * * * ** ** * * * *
503255 TTGCCATCATTAGGATACAAGACATTGACACTTTGG-GGTCACAAGAAGAAGACAACCATCGATT
311 TTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGTGCT-GC---AAG--GA-AATC-T-G-TT
** * * * * **
503319 -TTCGCAACAATCTTCATTCTTTTCAAGATTGGGAACTAAAAACACTTTCCCATCTTTAGGGTGC
366 CTT---TTC-A-C--CGTT-TTTT----A--GGGAA-T--CAA-AGTTTGCC-TC-TTA-AAT--
** *** ** ** * ** * ** *
503383 TTGACATTGATGCTCTGGTGTTGCAAGAAAAT-C-TTTTCTTTCCACCGTTTTTTAGGGA--ATC
408 AAGACAAACATG-AATGGTCAT--ACGAATCTCCATTTT-TTT--A-AG--GATTAGGCACCAT-
* ** * ** * * * * *** *
503444 AAA-GTTTGCCTCTT-AAATAAGACAAACATGA-ATGGTCATAC----AAATCTC--CATTTTTT
463 AAACG-TAG--TCTTCTCATAAG-GATGCATGATAT--TCATGCTTTGGATTCTCAAGAAAGTCT
* * **** * * ** *
503500 TTGGATTAGGC-ACC-ATAAAC-AT--AGTCTTCTCATAGGA--TGCATGAT-ATTCATGCAAAG
522 TT-G-TT--CCAACCAAT-TACTATAAAGTC-TAAGGTAGTACCT-CA-AATGAGCCACGC-AAG
*
503557 GTCTCTAGTATTGTTCTTCATTTG-TTTGAGATTAGGCACTATAAA-AGCAGTATCCTCATTAGG
578 GACTCTAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGA-CAGTATCCTCATTAGG
* *
503620 ATAAAAGATACTAATGATTTTCTTTTCGTGGAAATCTTTTTTTTGTAATTATTTTCCTTTAAATC
642 ATAAAAGATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATC
503685 AAGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
707 AAGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTG
* * * *
503750 GGATCCAAAAACACATTGCCTTTATTAGGATACAAGACATTGACACATTGCTGTCGCAAGAAAAG
772 GGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAG
* *
503815 CTTTTCTCTCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGT
837 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGT
*
503880 CATACTAATCCCCATTC-TTTTGGGATTA-GCACCATAAACAT-TGGTCTTC
902 CATACTAATCCCCATTCTTTTTGGGATTAGGCACCAT-AA-ATGTAGTCTTC
*
503929 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAAACTTTCTTCTGACCAA-TATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* * ** * *
503993 TAAAGTCTATGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATCGTTCTTCATTCGTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * * * * *
504058 -TGGATTAGGCACT-ATAAGCACATTATCCTCATTGGGATAAAAGATATTG----ATG---AT-C
131 GT-TATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTAC
* * * * * * * *
504113 -T-----T-CTTTGCATG--GTA--ATCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAACTA
194 ATGGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACCA
* ** * * * * * * *
504167 TCGATTCACAAAACAATCTCCATTCTTTCCAAGATTAAGACCCAAAAACACATTCCCTTCGTTAG
259 TCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAG
* * ** * * * * **
504232 GATACACGACATTGATGCTTTGGTG-TCGCAAGAAAAGCCT-TT-TTTTCCACCGTTTTTGATAG
324 GGTTCTTGACATTGATGCTCTGGTGCT-GCAAGGAAA-TCTGTTCTTTT-CACCGTTTTTTAGGG
* * * * *
504294 AATCAAAGTTTGCCTATTAAATAAGACAAATACGAATGGTCATACTAATC-CCTATTCATTTT-A
386 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCC-ATT-TTTTTAA
* * * * * ** ***
504357 CGATTAGGCACCATAAACGTGGTCTTCTCATAAGGATGCACGATAATGACACTTTATTTTCTCAA
449 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAA
* * ** * * * ** ** *
504422 GAAAGGCTCTT-TTCCGACCAATTGTTATAAAGTCTATGTTCGTGTCTCAAATGAGCCAAACATG
514 GAAAGTCT-TTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAG
* ** * * * * *
504486 GA-TCCTAGTATTGATCTTCATTCATTTT-ATTATTAGGCACTGA-AAACACATTCTGCTCATTA
578 GACT-CTAGTATTGTTCTTCATTTGTTTTGA-GATTAGGCACT-ATAAAGACAGTATCCTCATTA
* * * * * ***** * *
504548 GGATAAAATATATTGATGATTTTCTTTACATGGAAATGTAACCCTT--ACTCTATTTTTC-TTAA
640 GGATAAAAGATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAAT-TATTTTCCTTTAA
* * * * *
504610 GGTCAAAGTTCATCCCTTGAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
704 -ATCAAGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * * * * ** ** * *
504675 ATTGAGAACTAAAAACACTTTCCCATCTTTACGG-TGCTTGACATTGATGCTCTGGTGTTGCAAG
768 ATTGGGATCCAAAAACACATTGCCTTCATTA-GGATACAGGACATTGACACTTTGGTGTCGCAAG
** * ** *
504739 AAAATATTTTCTTTCCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT-T
832 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
* * * *
504803 ATGGTCATACGAATCTCCATTCTTTTTAGGATTGGGCACCATAAATGTAGTCTTC
897 ATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
* * * ** * * * **
504858 TCATGAGGATGCATGATATTGATGCTTTGGATTCACAAGAAAGGCTTTCTTC-CAGCCAATTACG
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGA-CCAATTATT
* * * * * *
504922 ATAAAGTCTAAGTTCGTGCCTCAAATGAG-C-GACGCAAGGACTCTAGTATTGTTCTTCATTTGT
65 ATAAAGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTCATTCGT
* * * * * **
504985 TTTGTGATTAGGCACT-ACAAAGACAGTCTGCTCATTAGGATAAAATATGA-TG---ATTTTCTT
128 TTTGTTATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAATAT-ATTGACAAATGCCTT
* * * * * *
505045 TGCATGGAAATGTTTTCCTTGCCCTATTTTTCTTAAAATC-AAGTTCATACCTTG-ATAAGACAA
191 TACATGGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAA
* * *
505108 CCATCGATTCTCGTAACAATCTCCACTCTTTTCAAGATCGCGAACTAAAACACACTTTCCCAATC
256 CCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAA-ACACTTTCCC-ATC
* * * * * *
505173 TTTA-GGTGC-TGACATTGAGGCTCTGGTGTTGCAAGAAAATCTTTTC-TTTCAACCGTTTTTGA
319 TTTAGGGTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTC-ACCGTTTTTTA
* * * *
505235 GGGAATCAAAGTTTGCCTCTTAAATAAGACAGACATGAATAGTCATACGAATCCCCATTTTTTTT
383 GGGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTA
* *
505300 AGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGATTCTCA
448 AGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCA
* * * * *
505365 AGAAAGGCTTTCTTCCAACCAATTTCTATAAAGTCTAA-GTCCGTGCCTCAAATGAGCCACGCAA
513 AGAAAGTCTTTGTTCCAACCAATTACTATAAAGTCTAAGGT-AGTACCTCAAATGAGCCACGCAA
* * * *
505429 GGACTCTAGTATTGTTCTTCATTGGTTTTGTGATTAGGCACCATAAAGATAGTATCCTCATTAGG
577 GGACTCTAGTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGG
*
505494 ATAAAAGATACTGATGATTTTCTTCTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATC
642 ATAAAAGATACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATC
*
505559 AAGGTTCATCCCTTTAAGTAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
707 AAGGTTCATCCC-TTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * * *
505624 GTGATCCAAAAACACATTGCTTTC-TTAAGGATACATGACATTGACACTTTGGTGTTGCAAGAAA
771 GGGATCCAAAAACACATTGCCTTCATT-AGGATACAGGACATTGACACTTTGGTGTCGCAAGAAA
* *
505688 TGCTTTTCTTTTCACCGTCTTTT-A-AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
835 AGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
*
505751 GGTCATAGTAATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
899 GGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
* * * **
505804 TCATAAGGATGCATGATAATGACGCTTTATTTTCTCAAGAAAGGTTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* *
505869 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTTATTCCTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * * *
505934 GTTTTTTGGTACTGAAAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * *
505999 GGAAATGTTTTCCTCGCCATACTTTCCTTCAAATAAAAGTTCATCTCTTGAACAAGACAACCATC
196 GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACCATC
* *
506064 GATTCTCATAACAATCTTCATTCTTTTCAAGATTG-GAACTAAAAACACTTTCCCATCTTTAGGG
261 GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGG
*
506128 TTCTTGACATTGATGCTCTGGTGCTGCAAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCA
326 TTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATCA
* *
506193 AAGTTTGCCTCTTAATTAAGACAAACATGAATGGTCATACCAATCTCCATTTTTTTAAGGATTAG
391 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTAG
* * *
506258 GCACCATAAACGTAGTCTTCTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTC
456 GCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGTC
* *
506323 TTTGTTCTAAACAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAG
521 TTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAG
*
506388 TATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGAGAAAAGAT
586 TATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGAT
* * *
506453 ACTGATGATTTTCTTTTTGTGAAAAT-TTTTTTTTGTAATTATTTTCCTTTAAATCAAGGTTCAT
651 ACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCAT
* *
506517 CCCTAAAATAAGACAAGCATTGATCCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
716 CCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
* ** *
506582 AACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTATCGTGAGAAAAGCTTTTCTCT
781 AACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
506647 CCACCGTTTTTGATAGAATCAAAATTTGCCTCTTAAATAAGAGAAACAGGAATGGTCCTACTAAT
846 CCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
*
506712 CCCCATTTTTTTTGGGATTAGGCACCATAAACAT-TA-TCTTC
911 CCCCATTCTTTTTGGGATTAGGCACCAT-AA-ATGTAGTCTTC
506753 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* *
506818 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTTATTCCTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * *
506883 GTTTTTTGGTACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * *
506948 GGAAATGTTTTCCTCGCCATACTTTCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAACTAT
196 GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAA-AGTTCATCCCTTGAATAAGACAACCAT
507012 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
* *
507077 GTTCTTGACATTGATGCTCTGGTGCTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATC
325 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATC
*
507142 AAAGTTTGCCTCTTAATTAAGACAAACATGAATGGTCATACGAATCTCCA-TTTTTTAAGGATTA
390 AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
* * *
507206 GGCACCATAAACGTAGTCTTCTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGT
455 GGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGT
*
507271 CTTTGTTCCAAACAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
520 CTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
507336 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
585 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
* * * *
507401 TACTGATGATTTTCTTTTCGTGGAACTCTTTTTTCTGCAAATATTTTCCTTTAAATCAGGGTTCA
650 TACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCA
* *
507466 TCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCCTTTCAAGATTGGGATCCAA
715 TCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * *
507531 AAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGTCGCGACAAAAGCTTTTCTC
780 AAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
507596 TCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
845 TCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
** * *
507661 TCCCCATTCTTTTTGGGATTAGGCACCATAAACATTGCCTTC
910 TCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
507703 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* *
507768 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTTATTCCTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * * * *
507833 GTTTTTTGGTACTAAAAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * *
507898 GGAAATGTTTTCCTCGCCATACTTTCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAACTAT
196 GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAA-AGTTCATCCCTTGAATAAGACAACCAT
507962 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
* *
508027 GTTCTTGACATTGATGCTCTGGTGCTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATC
325 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATC
*
508092 AAAGTTTGCCTCTTAATTAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
390 AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
* * *
508157 GGCACCATAAACGTAGTCTTCTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGT
455 GGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGT
*
508222 CTTTGTTCCAAACAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
520 CTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
508287 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
585 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
* * *
508352 TACTGATGATTTTCTTTTCGTGGAACTCTTTTTTCTGCAA-TATTTTCCTTTAAATCAGGGTTCA
650 TACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCA
* *
508416 TCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCCTTTCAAGATTGGGATCCAA
715 TCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* *
508481 AAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGTCGCGAAGAAATGCTTTTCT
780 AAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGC-AAGAAAAGCTTTTCT
*
508546 TT-CACCGTCTTTT-ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAGT
844 TTCCACCGT-TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACT
508609 AATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
908 AATCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
* * * **
508653 TCATAAGGATGCATGATAATGACGCTTTATTTTCTCAAGAAAGGTTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* *
508718 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTTATTCCTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * * *
508783 GTTTTTTGGTACTGAAAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * *
508848 GGAAATGTTTTCCTCGCCATACTTTCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAACTAT
196 GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAA-AGTTCATCCCTTGAATAAGACAACCAT
508912 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
*
508977 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATC
325 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATC
*
509042 AAAGTTTGCCTCTTAATTAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
390 AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
* * *
509107 GGCACCATAAACGTAGTCTTCTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGT
455 GGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGT
*
509172 CTTTGTTCCAAACAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
520 CTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
*
509237 GAATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
585 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
* * * *
509302 TACTGATGATTTTCTTTTCGTGGAACTCTTTTTTCTGCAAATATTTTCCTTTAAATCAGGGTTCA
650 TACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCA
* * *
509367 TCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCCTTTCTAGATTGGGATCCAA
715 TCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * *
509432 AAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGTCGCGACAAAAGCTTTTCTC
780 AAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
509497 TCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
845 TCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
** *
509562 TCCCCATTCTTTTTGGGATTAGGCACCATAAACATTGTCTTC
910 TCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
509604 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* *
509669 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTTATTCCTTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
* * * *
509734 GTTTTTTGGTACTGAAAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
131 GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
* * * *
509799 GGAAATGTTTTCCTCGCCATACTTTCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAACTAT
196 GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAA-AGTTCATCCCTTGAATAAGACAACCAT
509863 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
260 CGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGG
* *
509928 GTTCTTGACATTGATGCTCTGGTGCTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATC
325 GTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATC
*
509993 AAAGTTTGCCTCTTAATTAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
390 AAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTA
* * *
510058 GGCACCATAAACGTAGTCTTCTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGT
455 GGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGT
*
510123 CTTTGTTCCAAACAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
520 CTTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTA
510188 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
585 GTATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGA
* * * *
510253 TACTGATGATTTTCTTTTCGTGGAACTCTTTTTTCTGCAAATATTTTCCTTTAAATCAGGGTTCA
650 TACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCA
* *
510318 TCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCCTTTCAAGATTGGGATCCAA
715 TCCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAA
* * * *
510383 AAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGTCGCGACAAAAGCTTTTCTC
780 AAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
510448 TCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
845 TCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA
** *
510513 TCCCCATTCTTTTTGGGATTAGGCACCATAAACATTGTCTTC
910 TCCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
510555 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
1 TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
* * **
510620 TAAAGTCTATGTGCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT-ATTCTTCATTCGTTT
66 TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGA-TCTTCATTCGTTT
** * * *
510684 TGGGATTAGGCACT-ATAAGCACAATATCCTCATTAGGAT-AAATGATATTG----ATG--TTT-
130 TGTTATTAGGCACTGA-AAACACATTCTCCTCATTAGGATAAAAT-ATATTGACAAATGCCTTTA
* * * ** *
510740 --T-----TCTTTTCATGGTAAT-C-TT--TT-AAATCAAAGTTCATCCCTTAAATAAGACAACC
193 CATGGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACC
* * * * * * * * * *
510793 ATTGATTCTCATAGCAATCTCCATTCTTTCCAAGA-TCAGGACCCAAAAACACATTCCCTTCGTT
258 ATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGA-GAACTAAAAACACTTTCCCATCTTT
* * ** * ** * * * * * * **
510857 AGGATACACGACTTTGACACTTTGGTGCCGCAAGAAAAGCT-TT-TTTTCCCCCGTTTTTGATAG
322 AGGGTTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTT-CACCGTTTTTTAGGG
* * ** *
510920 AATCAAAGTTTGCCTCTGAAATAAGACAAATATGAATGGTCATAATAATC-CCAATTCTTTTT-G
386 AATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCC-ATT-TTTTTAA
*
510983 GGTTTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
449 GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
511023 CCATAATAAT
Statistics
Matches: 9364, Mismatches: 1216, Indels: 711
0.83 0.11 0.06
Matches are distributed among these distances:
924 4 0.00
925 9 0.00
926 13 0.00
927 9 0.00
928 202 0.02
929 439 0.05
930 564 0.06
931 674 0.07
932 333 0.04
933 13 0.00
934 2 0.00
935 5 0.00
936 15 0.00
937 12 0.00
938 7 0.00
939 2 0.00
941 2 0.00
942 11 0.00
943 11 0.00
944 328 0.04
945 94 0.01
946 327 0.03
947 16 0.00
948 135 0.01
949 689 0.07
950 2344 0.25
951 1887 0.20
952 162 0.02
953 13 0.00
955 4 0.00
958 3 0.00
959 3 0.00
960 1 0.00
961 3 0.00
962 4 0.00
963 3 0.00
964 114 0.01
965 1 0.00
966 3 0.00
967 1 0.00
968 4 0.00
969 5 0.00
970 1 0.00
971 2 0.00
972 1 0.00
973 3 0.00
974 1 0.00
975 1 0.00
976 8 0.00
977 11 0.00
978 7 0.00
979 8 0.00
980 11 0.00
981 18 0.00
982 12 0.00
983 14 0.00
984 66 0.01
985 22 0.00
986 94 0.01
987 119 0.01
988 10 0.00
989 15 0.00
990 26 0.00
991 12 0.00
992 9 0.00
993 10 0.00
994 7 0.00
995 8 0.00
996 4 0.00
998 2 0.00
999 3 0.00
1000 2 0.00
1001 2 0.00
1002 3 0.00
1003 3 0.00
1004 4 0.00
1005 1 0.00
1006 1 0.00
1007 1 0.00
1008 1 0.00
1009 8 0.00
1010 6 0.00
1012 3 0.00
1013 5 0.00
1014 2 0.00
1015 3 0.00
1016 1 0.00
1018 9 0.00
1019 9 0.00
1020 6 0.00
1021 238 0.03
1022 30 0.00
1023 14 0.00
1024 54 0.01
1025 54 0.01
1026 78 0.01
1027 57 0.01
1028 40 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (951 bp):
TCATAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTA
TAAAGTCTATGTTCGTGCCTCAAATGAGCCTAACCTGGATTCTAGTATTGATCTTCATTCGTTTT
GTTATTAGGCACTGAAAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
GGAAATGTTTTCCTTGCCATACTTTCCTTCAAATCAAAGTTCATCCCTTGAATAAGACAACCATC
GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGG
TTCTTGACATTGATGCTCTGGTGCTGCAAGGAAATCTGTTCTTTTCACCGTTTTTTAGGGAATCA
AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACGAATCTCCATTTTTTTAAGGATTAG
GCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTCATGCTTTGGATTCTCAAGAAAGTC
TTTGTTCCAACCAATTACTATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAG
TATTGTTCTTCATTTGTTTTGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGAT
ACTGATGATTTTCTTTTCGTGGAAATCTTTTTTTTGCAATTATTTTCCTTTAAATCAAGGTTCAT
CCCTTAAATAAGACAAGCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGATCCAAA
AACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
CCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
CCCCATTCTTTTTGGGATTAGGCACCATAAATGTAGTCTTC
Found at i:506780 original size:475 final size:476
Alignment explanation
Indices: 504128--511022 Score: 6792
Period size: 475 Copynumber: 14.6 Consensus size: 476
504118 TGCATGGTAA
* **
504128 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAA-CTATCGATTCACAAAACAATCTCCATTC
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATTC
* ** * * * *
504192 TTTCCAAGATTAAGACCCAAAAACACATTCCCTTCGTTAGGATACACGACATTGATGCTTTGGTG
65 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTG
* * *
504257 TCGCAAGAAAAGCCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTATTAAATAAGAC
130 TCGCGAGAAAAG-CTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * * * * *
504321 AAATACGAATGGTCATACTAATCCCTATTCATTTTACGATTAGGCACCATAAAC-GTGGTCTTCT
194 AAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCT
* ** *** * * **
504385 CATAAGGATGCACGATAATGACACTTTATTTTCTCAAGAAAGGCTCTT-TTCCGACCAATTGTTA
259 CATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCT-TTCTTCCAACCAATTACTA
* * * ** * * *
504449 TAAAGTCTATGTTCGTGTCTCAAATGAGCCAAACATGGA-TCCTAGTATTGATCTTCATTCATTT
323 TAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACT-CTAGTATTGTTCTTCATTCGTTT
* * * * * * * *
504513 TATTATTAGGCACTGA-AAACACATTCTGCTCATTAGGATAAAATATATTGATGATTTTCTTTAC
387 TGTGATTAGGCACT-ATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTC
*** * **
504577 ATGGAAATGTAACCCTTACTCTATTT
451 ATGGAAATGTTTTCCTTGCAATATTT
* * * *
504603 TTC-TTAAGGTCAAAGTTCATCCCTTGAATAAGACAACCATCGATTCTCGTAACAATCTCCATTC
1 TCCTTTAA-ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * * * *
504667 TTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTACGG-TGCTTGACATTGATGCTCTGGT
65 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTA-GGATACATGACATTGACGCTTTGGT
* * ** * *
504731 GTTGCAAGAAAATATTTTCTTTCCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAAATAAGAC
129 GTCGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * *
504796 AAACAT-TATGGTCATACGAATCTCCATTCTTTTTAGGATTGGGCACCAT-AA-ATGTAGTCTTC
194 AAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAT-TAGTCTTC
* * * * * *
504858 TCATGAGGATGCATGATATTGATGCTTTGGATTCACAAGAAAGGCTTTCTTCCAGCCAATTACGA
258 TCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTA
* * *
504923 TAAAGTCTAAGTTCGTGCCTCAAATGAGCGACGCAAGGACTCTAGTATTGTTCTTCATTTGTTTT
323 TAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTT
* * * *
504988 GTGATTAGGCACTACAAAGACAGTCTGCTCATTAGGAT-AAA-ATA-TGATGATTTTCTTTGCAT
388 GTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
**
505050 GGAAATGTTTTCCTTGCCCTATTT
453 GGAAATGTTTTCCTTGCAATATTT
* * * * * *
505074 TTCTTAAAATC-AAGTTCATACCTT-GATAAGACAACCATCGATTCTCGTAACAATCTCCACTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * * *
505137 TTTCAAGATCGCGAACTAAAACACACTTTCCCAATCTTTAGG-TGC-TGACATTGAGGCTCTGGT
66 TTTCAAGATTGGGAACCAAAA-ACACATTCCC-TTCTTTAGGATACATGACATTGACGCTTTGGT
* * * * *
505200 GTTGCAAGAAAATCTTTTCTTTCAACCGTTTTTGAGGGAATCAAAGTTTGCCTCTTAAATAAGAC
129 GTCGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * *
505265 AGACATGAATAGTCATACGAATCCCCATTTTTTTTAGGATTAGGCACCAT-AA-ATGTAGTCTTC
194 AAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAT-TAGTCTTC
* * *
505328 TCATAAGGATGCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCCAACCAATTTCTA
258 TCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTA
*
505393 TAAAGTCTAA-GTCCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTGGTTT
323 TAAAGTCTAAGGT-CGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTT
* * * * *
505457 TGTGATTAGGCACCATAAAGATAGTATCCTCATTAGGATAAAAGATACTGATGATTTTCTTCTCG
387 TGTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCA
* **
505522 TGGAAATCTTTTTTTTGCAATTATTT
452 TGGAAATGTTTTCCTTGCAA-TATTT
* * *
505548 TCCTTTAAATCAAGGTTCATCCCTTTAAGTAAGACAAGCATTGATTCTCGTAACAATCTCCATTC
1 TCCTTTAAATCAAAGTTCATCCC-TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTC
* * * * * *
505613 TTTTCAAGATTGTGATCCAAAAACACATTGCTTTCTTAAGGATACATGACATTGACACTTTGGTG
65 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTG
* * * *
505678 TTGCAAGAAATGCTTTTCTTTTCACCGTCTTTT-A-AGAATCAAAGTTTGCCTCTTAAATAAGAC
130 TCGCGAGAAAAGCTTTTCTTTCCACCGT-TTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGAC
* *
505741 AAACATGAATGGTCATAGTAATCCCCATTCTTTTTGGGATTAGGCACCAT-AA-ATGTAGTCTTC
194 AAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAT-TAGTCTTC
* *** ** *
505804 TCATAAGGATGCATGATAATGACGCTTTATTTTCTCAAGAAAGGT-TTTCTTCTGACCAATTATT
258 TCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAA-GTCTTTCTTCCAACCAATTACT
* * * * * * *
505868 ATAAAGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTTATTCCT
322 ATAAAGTCTAAGGTCGTGCCTCAAATGAGCC--ACGCAAGGACTCTAGTATTGTTCTTCATTCGT
** * * * * * * * ** * **
505931 TTTGTTTTTTGGTACTGA-AAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTT
385 TTTGTGATTAGGCACT-ATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTT
* * * *
505995 ACATGGAAATGTTTTCCTCGCCATACTT
449 TCATGGAAATGTTTTCCTTGCAATATTT
* * * * * * * *
506023 TCCTTCAAATAAAAGTTCATCTCTTGAACAAGACAACCATCGATTCTCATAACAATCTTCATTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * * *
506088 TTTCAAGATT-GGAACTAAAAACACTTTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGTG-
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * * * * * * *
506151 CTGCAAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAATTAAGACA
131 C-GCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * *
506216 AACATGAATGGTCATACCAATCTCCATT-TTTTTAAGGATTAGGCACCATAAAC-GTAGTCTTCT
195 AACATGAATGGTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATTAGTCTTCT
* * * * * * * *
506279 CATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTCTTTGTTCTAAACAATTACTAT
259 CATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTAT
* * *
506344 AAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTTGTTTTG
324 AAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTG
* * * **
506409 AGATTAGGCACTATAAAGACAGTATCCTCATTAGGAGAAAAGATACTGATGATTTTCTTTTTGTG
389 TGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATG
* ** *
506474 AAAAT-TTTTTTTTGTAATTATTT
454 GAAATGTTTTCCTTGCAA-TATTT
* * * *
506497 TCCTTTAAATCAAGGTTCATCCCTAAAATAAGACAAGCATTGATCCTCGTAACAATCTCCATTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
506562 TTTCAAGATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACTTTGGTAT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * * *
506627 CGTGAGAAAAGCTTTTCTCTCCACCGTTTTTGATAGAATCAAAATTTGCCTCTTAAATAAGAGAA
131 CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* * * *
506692 ACAGGAATGGTCCTACTAATCCCCATTTTTTTTGGGATTAGGCACCATAAACATTA-TCTTCTCA
196 ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
* ** * ** *
506756 TAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATAA
261 TAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTATAA
* * * * * * *
506821 AGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTTATTCCTTTTG
326 AGTCTAAGGTCGTGCCTCAAATGAGCC--ACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTG
** * * * * * * ** * ** *
506884 TTTTTTGGTACTGA-AAACACATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
389 TGATTAGGCACT-ATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
* * *
506948 GGAAATGTTTTCCTCGCCATACTT
453 GGAAATGTTTTCCTTGCAATATTT
* * **
506972 TCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAA-CTATCGATTCTCGTAACAATCTCCATT
1 TCCTTTAAATCAA-AGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATT
* * * * * * * * *
507035 CTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGT
64 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGT
* * * * * * * * *
507100 G-CTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAATTAAGA
129 GTC-GCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * * *
507164 CAAACATGAATGGTCATACGAATCTCCATT-TTTTAAGGATTAGGCACCATAAAC-GTAGTCTTC
193 CAAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTC
* * * * * * *
507227 TCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTCTTTGTTCCAAACAATTACTA
258 TCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTA
* * *
507292 TAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTTGTTTT
323 TAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTT
* * *
507357 GAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATACTGATGATTTTCTTTTCGT
388 GTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
* * *
507422 GGAACTCTTTT-TTCTGCAAATATTT
453 GGAAATGTTTTCCT-TGC-AATATTT
** * * *
507447 TCCTTTAAATCAGGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCC
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
507512 TTTCAAGATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * *
507577 CGCGACAAAAGCTTTTCTCTCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAA
131 CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* *
507642 ACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATT-GCCTTCTCA
196 ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
* ** * ** *
507706 TAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATAA
261 TAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTATAA
* * * * * * *
507771 AGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTTATTCCTTTTG
326 AGTCTAAGGTCGTGCCTCAAATGAGCC--ACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTG
** * * * * * * * * ** * ** *
507834 TTTTTTGGTACTAAAAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACATG
389 TGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATG
* * *
507899 GAAATGTTTTCCTCGCCATACTT
454 GAAATGTTTTCCTTGCAATATTT
* * **
507922 TCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAA-CTATCGATTCTCGTAACAATCTCCATT
1 TCCTTTAAATCAA-AGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATT
* * * * * * * * *
507985 CTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGT
64 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGT
* * * * * * * * *
508050 G-CTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAATTAAGA
129 GTC-GCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * *
508114 CAAACATGAATGGTCATACGAATCTCCATT-TTTTTAAGGATTAGGCACCATAAAC-GTAGTCTT
193 CAAACATGAATGGTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATTAGTCTT
* * * * * * *
508177 CTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTCTTTGTTCCAAACAATTACT
257 CTCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACT
* * *
508242 ATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTTGTTT
322 ATAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTT
* * *
508307 TGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATACTGATGATTTTCTTTTCG
387 TGTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCA
* * *
508372 TGGAACTCTTTT-TTCTGCAATATTT
452 TGGAAATGTTTTCCT-TGCAATATTT
** * * *
508397 TCCTTTAAATCAGGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCC
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
508462 TTTCAAGATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* *
508527 CGCGAAGAAATGCTTTTCTTT-CACCGTCTTTT-ATAGAATCAAAGTTTGCCTCTTAAATAAGAC
131 CGCG-AGAAAAGCTTTTCTTTCCACCGT-TTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGAC
* *
508590 AAACATGAATGGTCATAGTAATCCCCATTCTTTTTGGGATTAGGCACCAT-AA-ATGTAGTCTTC
194 AAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAT-TAGTCTTC
* *** ** *
508653 TCATAAGGATGCATGATAATGACGCTTTATTTTCTCAAGAAAGGT-TTTCTTCTGACCAATTATT
258 TCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAA-GTCTTTCTTCCAACCAATTACT
* * * * * * *
508717 ATAAAGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTTATTCCT
322 ATAAAGTCTAAGGTCGTGCCTCAAATGAGCC--ACGCAAGGACTCTAGTATTGTTCTTCATTCGT
** * * * * * * * ** * **
508780 TTTGTTTTTTGGTACTGA-AAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTT
385 TTTGTGATTAGGCACT-ATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTT
* * * *
508844 ACATGGAAATGTTTTCCTCGCCATACTT
449 TCATGGAAATGTTTTCCTTGCAATATTT
* * **
508872 TCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAA-CTATCGATTCTCGTAACAATCTCCATT
1 TCCTTTAAATCAA-AGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATT
* * * * * * * * *
508935 CTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGT
64 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGT
* * * * * * * * *
509000 G-CTGCAAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAATTAAGA
129 GTC-GCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * *
509064 CAAACATGAATGGTCATACGAATCTCCATT-TTTTTAAGGATTAGGCACCATAAAC-GTAGTCTT
193 CAAACATGAATGGTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATTAGTCTT
* * * * * * *
509127 CTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTCTTTGTTCCAAACAATTACT
257 CTCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACT
* * * *
509192 ATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAGAATTGTTCTTCATTTGTTT
322 ATAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTT
* * *
509257 TGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATACTGATGATTTTCTTTTCG
387 TGTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCA
* * *
509322 TGGAACTCTTTT-TTCTGCAAATATTT
452 TGGAAATGTTTTCCT-TGC-AATATTT
** * * *
509348 TCCTTTAAATCAGGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCC
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * * *
509413 TTTCTAGATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * *
509478 CGCGACAAAAGCTTTTCTCTCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAA
131 CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
*
509543 ACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATT-GTCTTCTCA
196 ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
* ** * ** *
509607 TAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATAA
261 TAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTATAA
* * * * * * *
509672 AGTCTATGTTCGTGCCTCAAATGAGCCTAAC-C-TGGATTCTAGTATTGATCTTTATTCCTTTTG
326 AGTCTAAGGTCGTGCCTCAAATGAGCC--ACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTG
** * * * * * * * ** * ** *
509735 TTTTTTGGTACTGA-AAACAAATTCTCCTCATTAGGATAAAATATATTGACAAATGCCTTTACAT
389 TGATTAGGCACT-ATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCAT
* * *
509799 GGAAATGTTTTCCTCGCCATACTT
453 GGAAATGTTTTCCTTGCAATATTT
* * **
509823 TCCTTCAAA-AAATAGTTCATCCCTCGAATAAGACAA-CTATCGATTCTCGTAACAATCTCCATT
1 TCCTTTAAATCAA-AGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAATCTCCATT
* * * * * * * * *
509886 CTTTTCAAGATTGAGAACTAAAAACACTTTCCCATCTTTAGGGTTCTTGACATTGATGCTCTGGT
64 CTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGT
* * * * * * * * *
509951 G-CTGCTAGGAGATCTGTTCTTTTCACCGTTTTTTAGGGAATCAAAGTTTGCCTCTTAATTAAGA
129 GTC-GCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGA
* * *
510015 CAAACATGAATGGTCATACGAATCTCCATT-TTTTTAAGGATTAGGCACCATAAAC-GTAGTCTT
193 CAAACATGAATGGTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATTAGTCTT
* * * * * * *
510078 CTCATAGGGATGCATGATATTCATGCTTTGGATTCTTAGGAAAGTCTTTGTTCCAAACAATTACT
257 CTCATAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACT
* * *
510143 ATAAAGTCTAAGGTAGTACCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTTGTTT
322 ATAAAGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTT
* * *
510208 TGAGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATACTGATGATTTTCTTTTCG
387 TGTGATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCA
* * *
510273 TGGAACTCTTTT-TTCTGCAAATATTT
452 TGGAAATGTTTTCCT-TGC-AATATTT
** * * *
510299 TCCTTTAAATCAGGGTTCATCCCTTAAATAAGACAAGCATTGATTCTCTTAACAATCTCCATTCC
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* * * * * *
510364 TTTCAAGATTGGGATCCAAAAACACATTGCCTTCATTAGGATACAGGACATTGACACATTGGTGT
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * *
510429 CGCGACAAAAGCTTTTCTCTCCACCGTTTTTGATATAATCAAAGTTTGCCTCTTAAATAAGACAA
131 CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
*
510494 ACATGAATGGTCATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACATT-GTCTTCTCA
196 ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
* ** * ** *
510558 TAAGGATGCACGATAATGATGCTTTGTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATAA
261 TAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTATAA
* ** * * *
510623 AGTCT-ATGTGCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTATTCTTCATTCGTTTTGG
326 AGTCTAAGGT-CGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTGT
* * *
510687 GATTAGGCACTAT-AAGCACAATATCCTCATTAGGATAAATGATATTGATGTTTTTCTTTTCAT-
390 GATTAGGCACTATAAAG-ACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATG
510750 G----G-------T---A-A---
454 GAAATGTTTTCCTTGCAATATTT
* * * * *
510755 TCTTTTAAATCAAAGTTCATCCCTTAAATAAGACAACCATTGATTCTCATAGCAATCTCCATTCT
1 TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
* ** * * * * * *
510820 TTCCAAGATCAGGACCCAAAAACACATTCCCTTCGTTAGGATACACGACTTTGACACTTTGGTGC
66 TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
* * * *
510885 CGCAAGAAAAGCTTTT-TTTCCCCCGTTTTTGATAGAATCAAAGTTTGCCTCTGAAATAAGACAA
131 CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
* * * * * *
510949 ATATGAATGGTCATAATAATCCCAATTCTTTTTGGGTTTAGGCACCATAAAC-GTAGTCTTCTCA
196 ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
511013 TAAGGATGCA
261 TAAGGATGCA
511023 CCATAATAAT
Statistics
Matches: 5203, Mismatches: 1090, Indels: 274
0.79 0.17 0.04
Matches are distributed among these distances:
454 1 0.00
455 111 0.02
456 127 0.02
459 1 0.00
460 1 0.00
464 1 0.00
469 141 0.03
470 231 0.04
471 51 0.01
472 17 0.00
473 125 0.02
474 775 0.15
475 2266 0.44
476 1221 0.23
477 124 0.02
478 10 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (476 bp):
TCCTTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCT
TTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACGCTTTGGTGT
CGCGAGAAAAGCTTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAA
ACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATTAGTCTTCTCA
TAAGGATGCATGATAATGATGCTTTGGATTCTCAAGAAAGTCTTTCTTCCAACCAATTACTATAA
AGTCTAAGGTCGTGCCTCAAATGAGCCACGCAAGGACTCTAGTATTGTTCTTCATTCGTTTTGTG
ATTAGGCACTATAAAGACAGTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATGGA
AATGTTTTCCTTGCAATATTT
Found at i:512066 original size:479 final size:468
Alignment explanation
Indices: 511034--512354 Score: 1496
Period size: 479 Copynumber: 2.8 Consensus size: 468
511024 CATAATAATC
** ** * * *
511034 CTAGTATTGACCTTCATTCATTTTGTTTTTAGGCACTAAAAACACATTCTGCTTATTAAGATAAA
1 CTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTAAAAGCACATTATCCTTATTAAGAT-AA
* *
511099 AT-ATATTGATGATTTTCTTTACATGGAAATGTTTTCATTGCCCTATTTTCC-TTAAAGTCAAAG
65 ATGATATTGATGATTTTCTTTTC-TGGAAAT-TTTT--TTG-GCTATTTTCCTTTAAA-TCAAAG
* *
511162 TTCATCCCTTGAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGAGAA
124 TTCATCCCTTAAATAAGACAA-CATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA
* ** * * * * *
511227 CTAAAAACACTTTCCTACCTTTAGGGTGCT-TGACATTGATGCTCTGGTGTTGCAAGAAAATCTT
188 CTAAAAACACATTCCTTTCTTTAGGAT-ATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
511291 TTCTTTCCACCGTTTTTG-AGGGAATCAAAATTTGCCTCTTAAATAAGGCAAACATGAATAGTCA
252 TTCTTTCCACCGTTTTTGTA--GAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCA
* * * *
511355 TACGAATCTCCATTCTTTTTAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATGCATGAT
315 TACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
* *
511420 ATTGATGCTTTAGATTCTCAAGAAAGGCTTTCTTCCAACCAATTACTATAAAGTCTAAGTTCATC
380 AATGATGCTTTAGATTCTCAAGAAAGACTTTCTTCCAACCAATTACTATAAAGTCTAAGTTCATC
** *
511485 CCTCAAATGAGCCACGCAAGGACT
445 CCTCAAATGAGCCAAACAAGAACT
* * * * * * ** *
511509 CTGGAATTATTCTTCATTCGTTTTGTGATTAGGAACTATAAAG-ACAGTATCCTCGTCAAGATAA
1 CTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTA-AAAGCACATTATCCTTATTAAGATAA
* * * *
511573 AAGATATGGATGATTATCTTTTCGTGGAAATCTTTTTTTTGTGCTTATTTTCCTTTAAATCAAGG
65 ATGATATTGATGATTTTCTTTTC-TGGAAA---TTTTTTTG-GC-TATTTTCCTTTAAATCAAAG
* *
511638 TTCATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAT
124 TTCATCCCTTAAATAAGACAA-CATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA
** *
511703 CTAAAAACACATTGCCTTTCTTTCCAGGATATATGACATTGACACTTTGGTGTCGCAAGAAACGC
188 CTAAAAACACATT-CCTTTCTTT--AGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
511768 GTTTCTTTCCTCCGTTTTTTGTAGAATCAAAGTTTGCCT-TTAAAATAAGACAAACATGAATGGT
250 TTTTCTTTCCACCG-TTTTTGTAGAATCAAAGTTTGCCTCTT-AAATAAGACAAACATGAATGGT
*
511832 CATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACG
313 CATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACG
* ** * *
511897 ATAATGATGCTTT-GTTTTCTCAAGAAAGACTTTCTTCTGACCAATTATTATAAAGTCTATGTTC
378 ATAATGATGCTTTAG-ATTCTCAAGAAAGACTTTCTTCCAACCAATTACTATAAAGTCTAAGTTC
* * *
511961 GTGCCTCAAATGAGCCAAACAAGAATT
442 ATCCCTCAAATGAGCCAAACAAGAACT
* *
511988 CTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTACAAGCACATTATCCTTATTAGGATAAA
1 CTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTAAAAGCACATTATCCTTATTAAGATAAA
* *
512053 TGATATTGATGATTTTCTTTTC-----A------TGG-TA--ATCCTTAAAATCAAAGTTCATCC
66 TGATATTGATGATTTTCTTTTCTGGAAATTTTTTTGGCTATTTTCCTTTAAATCAAAGTTCATCC
** * * * * * * *
512104 CCAAAATAAGACAACGTTCGATTCTCATAACAATCCCCATTCTTTCCAAGATTAGGACCCAAAAA
131 CTTAAATAAGACAAC-ATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACTAAAAA
* * * * * *
512169 CACATTCCCTTCGTTAGGATACACGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCC
195 CACATTCCTTTCTTTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* *
512234 ACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAATATGAATGGTCATAATAATCC
260 ACCGTTTTTG-TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCC
* * *
512299 CTATTCTTTTTAGGATTAGGCACCATAAACTTAGTCTTGTCATAAGGATGCACGAT
324 CCATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGAT
512355 GAGGACGCTT
Statistics
Matches: 720, Mismatches: 107, Indels: 57
0.81 0.12 0.06
Matches are distributed among these distances:
455 6 0.01
456 146 0.20
457 2 0.00
458 8 0.01
459 79 0.11
461 2 0.00
463 1 0.00
464 2 0.00
473 1 0.00
474 3 0.00
475 69 0.10
476 88 0.12
477 16 0.02
478 8 0.01
479 282 0.39
480 6 0.01
481 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (468 bp):
CTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTAAAAGCACATTATCCTTATTAAGATAAA
TGATATTGATGATTTTCTTTTCTGGAAATTTTTTTGGCTATTTTCCTTTAAATCAAAGTTCATCC
CTTAAATAAGACAACATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACTAAAAAC
ACATTCCTTTCTTTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
CCGTTTTTGTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCC
ATTCTTTTTAGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCACGATAATGATGCTTT
AGATTCTCAAGAAAGACTTTCTTCCAACCAATTACTATAAAGTCTAAGTTCATCCCTCAAATGAG
CCAAACAAGAACT
Found at i:519020 original size:475 final size:474
Alignment explanation
Indices: 515141--523109 Score: 8722
Period size: 476 Copynumber: 16.8 Consensus size: 474
515131 ATACACCCCC
* * *
515141 AAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTACATTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * *
515206 GTCCCAAAAACACATTCCCTTCATTAGGATACACGACACTGACGCATTGGTGTCGCAAGAAAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * *
515271 TTTTTTTTCCA-CATTTTTTGATACAATCAAAGTTTGTCTCTTAAATAAGACAATA-A-GACTAG
131 TTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAA-ACATGAATGG
* * * *
515333 TCATACCAATCCCTATTCTTTTCGAGATGAGGCACCATAAACGTAGTGTTCTCATAAGGATGCAT
194 TCATACTAATCCC-ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAT
* * * *
515398 GATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCAACTAATTATTATAAAAGTCTATGTT
258 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATT
* * * * * * * *
515463 CGTGCCACAAAGGAGACAAACAAGGATTCTAGTACTATTCTACATTCGTTTTGTAATTAGGCATT
323 CTTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-CATTCATTTTGTAATTAGGCACT
* * * * *
515528 GTAAACAGATTATCCTCATTAGGATAAATGATGTTCATGATTTTCTTTTCATGGAAATCATTTT-
387 ATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATC-TTTTC
* *
515592 TTT-CTCTAATTTTCGTTAAAATCA
451 TTTGCCCT-ATTTTCCTTAAAATCA
* * * * *
515616 AAGTTCATCCCTTCAATAAGATAAGCATCGATTCTTGTAATAATCTCCATTCTTTTCAAGATTAG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * ** *
515681 GACCCAAAAATACGTTCCCATCATTAGGATACACGACGTTGATGCTTTGCCGTCGCAAGACAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * *
515746 TTTTCTTTCCACCATTTTTGATAG-ATCGAAGTTTACTTCTTAAGTAGGACAAACATGAATGGTG
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * * * * *
515810 ATGCTAATTCCCATTCTTTCCCGGATTAGGCACCGTCATAAACATAGTCCTCTCATAAGGATGTA
196 ATACTAA-TCCCATTCTTTTCGGGATTAGGCA-C--CATAAACGTAGTCTTCTCATAAGGATGCA
* ** * * * * *
515875 TGATATTGATGCTTCAGTTTCTCAAGGAAA-GCTTTCTTCCAACAAATTGTTATTAAAGTCTCTA
257 TGATAATGATGCTTTGGTTTCTCAA-GAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATA
* * * * * *
515939 --CTTGGGCCTCGAATGAGCTAAACAAGGATTATAGTACTGTTCTTATTTCATTTTGTCATTAGG
321 TTCTT--GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTCA-TTCATTTTGTAATTAGG
* * * * * *
516002 CACTATAAACACATTATACTCTTTAGGATAAATGGTATTGATGATTTTCTTTCCCTGAAAATCTT
383 CACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTT
*
516067 TTCCTTGCCCATATTTTCCTTAAAATCA
448 TTCTTTGCCC-TATTTTCCTTAAAATCA
* * *
516095 AAGTTCATCTCTTAAATAAGGCAAGCATCGATTCGCGTAACAATCTCCATTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * ** * *
516160 GACCAAAAAACACATTCCCATCATTAGGGCACACGACATTGATGCTTTGGTGTCACAAGAAAAGG
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * * * *
516225 TTTTCATTCCACCGTTTTTGGTAGAATCAAAGTTTGTCTCTAAAATAAAACAAACAAGAATAGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * ** *
516290 ATACTAATCCCCATTCTTTTTGGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGGACACACGA
196 ATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * *
516355 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGT-AAAGTCTAAATTCT
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
* * * * * ** * *
516419 TGCCACAATTGAGCCAAACATGGCTTTTAGTATTGATGATCATTCATTTTGTTATTAGGCACTAA
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG-TTCTCATTCATTTTGTAATTAGGCACTAT
* * * *
516484 AAACACATTCTCCTCATTAGGATAAAAT-ATATTGATAATTTTCTTTACATGGAAATGTTTTCCT
389 AAACACATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTT
*
516548 TGGCCTATTTTCCTTAAAAATCA
453 TGCCCTATTTTCCTT-AAAATCA
* * * * * *
516571 AAGATCATCCCTTTAATAAGACAACCATCAATTCTCGTAACAATCTCTACTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * * ** * **
516636 GAACCAAAAACACTTTCCCATCTTTAGGGTACTTGACATTGATGCTTTGGTGTTGCAAGAAAATA
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
** * * *
516701 TTTTCTTTCCACCGGTTTTGAGAGAATCAAAGTTTCCCTCTTAAATAAGACAAACATTAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* *
516766 ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGCAGTCTTCTCATAAGGATGCATGA
196 ATACTAATCCC-ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * * *
516831 TAATGATCCTTTGGTTTCTCTAGAAAGG----C-TCCGACCAACTATTATAACAGTCTATGTTCA
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
* * * * * * *
516891 TGCCTCAAATTAGCCAATCAAGGATTCTAGCATTGTTCTTCATTCATTCTGTAATCAAGC-CCAT
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTAT
* * * *
516955 AAACACATTATCCTTATTAGGATAAATGATATTGATGATTTTCTTTTCTTGGAAATCTTTTTTTT
389 AAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTTT
**
517020 GCCCTTATTTTCCTTTCAATCA
454 GCCC-TATTTTCCTTAAAATCA
* *
517042 AAGTTCATCCCATAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * *
517107 GAGCCAAAAACACATTCCCTTCATTAAGATACACGATATTGATGCTTTGGTGTCGCAAGAAAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * * *
517172 TTTTCTTTCCACCAATTTTAATAGAATCAAAGTTTACCCCTTAAGTAAAACAAATATGAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * *
517237 AAACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
196 ATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * *
517302 CAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTAATATAAAAGTCTATATTCG
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
** * * * * * * * * *
517367 CACCTCATATGAGCCAATCAAGGATTCCAGTATCGTTTTTCTTTCGTTTTGTGATTGGGCACTAT
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTG-TTCTCATTCATTTTGTAATTAGGCACTAT
* * * * ** *
517432 AAACACATTATCCTTATTAGGGTAAATGATATTTATGATTTTCCTTACACAGAAATCTTCTCTTT
389 AAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTTT
517497 GCCCTATTTTCCTTAAAATCA
454 GCCCTATTTTCCTTAAAATCA
* * * * * * *
517518 CCAGTTCATCCTTTAAGA-AAGAAAAGCAGCGATTCTCGTAATAATCTACATTCTTTTCAACATT
1 -AAGTTCATCCCTTAA-ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT
* * * * * * * *
517582 AGGACCCAAAAACATATTCCCTTCATTAGGATAAATGAGACTGACGCGTTGGTGTCGCAAGAAAA
64 GGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * * * * *
517647 GCTTTTC-TTCCTACC-GTTTTGATAGAATCAATGTTTACCTCTAAAATAAAATAAATATTAATG
129 GCTTTTCTTTCC-ACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
* *
517710 GTCATACTAATCCCCATTCTTTTTGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
193 GTCATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCA
* * * *
517775 TGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTTTTCCGACCAATTATCATAAAAGTCAATGT
257 TGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATAT
* * * * * * * *
517840 CCGTGCCACAAAAGAGCCAAAGAAGGATTCTAGCACTGTTCTACATTCATTTTGTAATTAGGCAT
322 TCTTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-CATTCATTTTGTAATTAGGCAC
* * *
517905 TGT-AACACATTATCCTCATTAGGATAAATGATATTCATGATTTTCTTTTCATGGAAATCTTTT-
386 TATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTC
*
517968 TTT-CCGTAATTTTCCTTAAAATCA
451 TTTGCCCT-ATTTTCCTTAAAATCA
* * * * ** *
517992 AAGTTCTTCCCTTCAATAAGATAAGCATCGATTCCCACAACAATCTCCATTCTCTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* ** * * * *
518057 GACCCAAAAATATGTTCCCTTCATTAGGATAGACGACGTTGATGCTTTGGCGTCGCAAGACAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * *
518122 TTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTACTTCTTAACTAAGACAAACATGAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * *
518187 ATACTAATTCCCATTCTTTCTC-GGATTAGGCACCATCATAAACATAGTCTTCTCGTAAGGATGT
196 ATACTAA-TCCCATTCTTT-TCGGGATTAGGCA-C--CATAAACGTAGTCTTCTCATAAGGATGC
* * * * * *
518251 ATGATATTGATGCTTCGGTTTCTCAAGGAAA-GCTTTCTTCCAACAAATTGTTTTAAAAGTC--T
256 ATGATAATGATGCTTTGGTTTCTCAA-GAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTAT
* * ** * * * *
518313 ATGCTTGGGCCTCGAATGAGGTAAACAAGGATTATAGTATTGTTCTTATTTCGTTTTGTGATTAG
320 ATTCTT--GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTCA-TTCATTTTGTAATTAG
* * * ** * * *
518378 GCACTATAATCATATTTTAGTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATGAAAATCT
382 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCT
*
518443 TTTTTTTGCCCATATTTTCCTTAAAATCA
447 TTTCTTTGCCC-TATTTTCCTTAAAATCA
* *
518472 AAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * *
518537 GACCAAAAAACACATTCCCATCATTAGAATACACGACATTGATGCTTTGGTGTCACAAGAAAAGG
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * * *
518602 TTTTCATTCCACCATTTTTGGTAGAATCAAAGTTTGTCTCTAAAATAAGACGAACAAGAATAGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * * *
518667 ATACTAATCCCATTCTTTTTGGGATTAGGCACCATAAGCGTAGTCTTCTCATAAGGATACACGAT
196 ATACTAATCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGAT
* * *
518732 AATGATGCTTTGGTTTCTCAAGAAAGGC-TTCTTTCCCACCAAATT-TTGT-AAAGTCTAAATTC
261 AATGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TTCCGACC-AATTATTATAAAAGTCTATATTC
* * * * * *
518794 TTGCCACAATTGAGCCAAACATGGATTTTAGTATTGATCATCATTCATTTTGTTATTAGGCACTA
324 TTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTA
* * ** * *
518859 AAAACACATTCTCCTCATTAGGATAAAAT-ATATTGACAATTTTCTTTACATGGAAATGTTTTCC
388 TAAACACATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCT
518923 TTGCCCTATTTTCCTTAAAATCA
452 TTGCCCTATTTTCCTTAAAATCA
* * * * * * * * *
518946 AAGATCATCCCTTTACTAAGACTACCGTCAATTCTCGTAACAATCTCTACTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * * * ** * * * **
519011 GAACCAAAAACACTTTCTCATCTTTAGGGTACTTGACATTGATGCTCTGGTGTTGTAAGAAAATA
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* *
519076 TTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * *
519141 ATGCTAATCCCTATTCTTTTCAGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATGCATGA
196 ATACTAATCCC-ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * * *
519206 TAGTGATCCTTTGGTTTCTCTAGAAAGGC--TC-T--GACCAATTATTATAACAGTCTATGTTCA
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
* * * * *
519266 TGCCTCAAATTAGCCAATCAAGGATTCTAGCATTGTTCTTCATTCATTCTGTAATTAGGC-CCAT
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTAT
* * * * *
519330 AAACACATTATCCTTATTAGGATAAAAGATATTGATGATCTTCTTTTC-TAGGAAATCTTTTTTT
389 AAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACAT-GGAAATCTTTTCTT
*
519394 TGCCCTTATTTTCCTTTAAATCA
453 TGCCC-TATTTTCCTTAAAATCA
* *
519417 AAGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAATAATCTCCATTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * ** * *
519482 GACCCAAAAACACATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGTTGCAAGAAAATC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * **
519547 TTTTCTTCCCACTATTTTTGATTGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGTTTGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * * * * *
519612 ATACTAATCCCCCTTTTTTTCGAGATTAGGCACCACAAACGTAGTCTTCTCATAAAGATCCATGA
196 ATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * * *
519677 TATTGATGCTTTGGTTTCTTAGGAAAGGCTTTCTTTCGACCAATTATTAT-AAAGTCTATGTTCA
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
* * * * *
519741 TACCTCAAATGAGCCAAACAAGGATTGTAGTGTTGCTCTCCATTCATTTTG-AGATTATGCACTA
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-CATTCATTTTGTA-ATTAGGCACTA
* * * *
519805 TAAACAAATTATCCTCATTAGGATAAATGATTTTCATGATTTTC-TTATCATGGAAATCTTTTTT
388 TAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTA-CATGGAAATCTTTTCT
* *
519869 TTACTCTTATTTT-CTTAAAATCA
452 TTGC-CCTATTTTCCTTAAAATCA
* * * *
519892 ATGTTCATCCCTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* *
519957 GAGCCAAAAACACATTCCCTTCATTAGGATACACGATATTGATGCTTTGGTGTCGCAAGAAAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * *
520022 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTACCCCTTAAGTAAAACAAATATTAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* *
520087 ATACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
196 ATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * *
520152 CAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTAATATAAAAGTCTATATTCA
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
** * * * * *
520217 CACCTCAAATGAGCCAATCAAGGATTCTAGTACTGTTCTTCTTTCGTTTTGTGATTAGGCACTAT
325 TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTAT
* * * * *
520282 CAACACATTATCCTCGTTAGGGTAAATGATATTTATGATTTTCTTTACATGGAAATCTTCTCTTT
389 AAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTTT
*
520347 GCCCTATTTTTCTTAAAATCA
454 GCCCTATTTTCCTTAAAATCA
* * * * * *
520368 ACACTTCATCCTTTAAAAAAGAAAAGCATCGATTCTCGTAAGAATCTACATT-TTTCTCAAGATT
1 A-AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTT-TCAAGATT
* * * * * * ** *
520432 AGGTCCCAAAAACACATTCCCTTCATTATGATATAGGACACTGACACGTTGGTGTCGCAAGAAAA
64 GGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAA
* * * * * * *
520497 GCTTTTCTTTCCACC-GTTTTGAAAGAATCAATGTTTACCTCTTAAATAAAACAAATATTAATGG
129 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGG
* * *
520561 TCATCCTAATAACCATTCTTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAT
194 TCATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCAT
* * * *
520626 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATCATAAAAGTCAATGTT
258 GATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATT
* * ** * * * *
520691 CGTGCCACAAAAAAGCCAAAGAAGGATTCTAGTACTGTTCTACATTCGTTTTGTAATTAGGCATT
323 CTTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-CATTCATTTTGTAATTAGGCACT
* * * *
520756 GTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTTTTTTCATGGAAATCATTT-T
387 ATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCT
*
520820 TT-CCCTAATTTTCCTTAATATCA
452 TTGCCCT-ATTTTCCTTAAAATCA
* * * **
520843 AAGTTCTTCCCTTCAATAAGATAAGCATCGATTAC-CACAACAATCTCCATTCTTTTCAAGATTG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATT-CTCGTAACAATCTCCATTCTTTTCAAGATTG
* * * * * * *
520907 GGACCCAAAAATACATTCCGTTCATTACGATATACGACGTTGATGCTTTGGCGTCGCAAGACAAG
65 GGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * * *
520972 CTTTTCTTTCCATCATTTTTGATAGAATCGAAGTTTACTTCTTAACTAAGACAAACATGAGTGGT
130 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGT
* * * * *
521037 CATACTAATTCCCATTCTTTCCCGGATTAGGCACCATCATAAACATAGTCTTCTCGTAAGGATGT
195 CATACTAA-TCCCATTCTTTTCGGGATTAGGCA-C--CATAAACGTAGTCTTCTCATAAGGATGC
* * * * * *
521102 ATGATATTGATGCTTCGGTTTCTCAAGGAAA-GCTTTCTTCCAACAAATTGTTTTAAAAGTCTA-
256 ATGATAATGATGCTTTGGTTTCTCAA-GAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTAT
* * ** * * * *
521165 A-GCTTGGGCCTCGAATGAGGTAAACAAGGATTATAGTATTGTTCTTATTTCGTTTTGTGATTAG
320 ATTCTT--GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTCA-TTCATTTTGTAATTAG
* * * * * *
521229 GCACTATAAACATATTTTACTCTTTAGGATAAATGATATTGATGATTTTCTTTGCATGAAAATCT
382 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCT
521294 TTTCTTTGCCCATATTTTCCTTAAAATCA
447 TTTCTTTGCCC-TATTTTCCTTAAAATCA
* * * * *
521323 AAGTTTATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCATTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * *
521388 GACCCAAAAACACATTCCCATCATTAGGATACACAACATTGATGCTTTGGTGTCACAAGAAAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * *
521453 TTTTCATTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * * * * *
521518 ATACTAATCCCATTC-TTCCTGGGATTAAGCACTATAAGCGTAGTCTTCTCATAAGGATACACGA
196 ATACTAATCCCATTCTTTTC-GGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * * *
521582 TAATGATGCCTTGGCTTCTCAAGAAAGGC-TTCTTTCTC-ACCAATTTTTGT-AAAGCCTAAATT
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTC-TTC-CGACCAATTATTATAAAAGTCTATATT
* * * * * *
521644 CTTGCCACAAATGAGCCAAACATGGATTTTAGTATTGATCATAATTCATTTTGTTATTAGGCACT
323 CTTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACT
* * * *
521709 AAAAACACATTCTCCTCATTAGGATAAAAT-ATATTGATAATTTTCTTTACATGGAAATGTTTTC
387 ATAAACACATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTACATGGAAATCTTTTC
* *
521773 CTTGCCTTATTTTCCTTAAAATCA
451 TTTGCCCTATTTTCCTTAAAATCA
* * * * * * * *
521797 AAGATCATCCCTTTACTAAGACCACCGTCGATTCTCGTAACAATCTCTACTCTTTTCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * * * * ** ** * * **
521862 GAACCAAAAGCACTTTCCCATCTTTAGGGCACTTGACATTGATGCTCTGGTGTTGCAAGAAAATA
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * *
521927 TTTTCTTTCCACCGTTTTTAAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATTAATGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* *
521992 ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCCCATAAGGATGCATGA
196 ATACTAATCCC-ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGA
* * * * * *
522057 TAATGATGCTTTGGTTTCTCTAGAAAAGCTTTCTTCTGGCCAATTATTGTAAAAGTCTATGTT-T
260 TAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCT
* * * *
522121 GTGCCTCAAATTAGCCAATCAAGGATTCTAGCATTGTTCTTCATTCATTTTGTAATTAGGC-CGA
325 -TGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTA
* * * * * * * *
522185 TAAACACATTATCCTTAATAGGATAAAAGAGATTGATGATTTTCTTTTCTTGCAAATCTTTTTTT
388 TAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTT
* *
522250 TACCCTTATTTTCCTTTAAATCA
453 TGCCC-TATTTTCCTTAAAATCA
* * * *
522273 AAGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAACAATCTCTATTATTTCCAAGATTGG
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* ** * ** * *
522338 GACCCAAAAACACATTGCCTTTTTTAGGATACATGACATTGACACTTTGGTGTTGCAAGAAAAGT
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
*** * * *
522403 TTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAACAAGACATACATGATTGGTC
131 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
* * * * * * * *
522468 GTACAAATCCCCTTTTTTTTGGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATCCACGAT
196 ATACTAATCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGAT
* * * * * *
522533 ATTGATGCTTTGGTTTCTCAGGAAAGGTTTTCTTCCGACCAATTATTAT-AAAGCCTATGTTCGT
261 AATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCTT
* * * * *
522597 GCCTCAAATGAGCCAAATAA-GATTCTAGTGTTGCTCTTCATTCTTTTTGTGATTAGGCACTATA
326 GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTC-TCATTCATTTTGTAATTAGGCACTATA
* * *
522661 AACAAATTATCCTCATTAGGATAAATGATATTGATGATTTTC-TTATCGTGGAAATCTTTTTTTT
390 AACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTA-CATGGAAATC-TTTTCTT
* *
522725 TACTCTTATTTTCCTTAAAATCA
453 TGC-CCTATTTTCCTTAAAATCA
* * * * *
522748 ATGTTCATCCCTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTGTCAAGATTGA
1 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
* * ** *
522813 GACCCAAAAACATATTCCCTTCATTAGGATACACGATAAGGTTGCTTTGGTGTCGCAAGAAAAGC
66 GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * * * *
522878 TTTTCTTTTCC-CCATTTTTGATAGAATCAAAGTTTACCCCCTAAGTAAAACAAATATTAATGGT
131 TTTTC-TTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGT
* * * *
522942 CATTCTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATGCATG
195 CATACTAAT-CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATG
* * *
523007 ACAATGATACTTTGGTTTCTCAAGAAAGGCTTTCTTCCCACCAATTGA-TATAAAAGTCTATA--
259 ATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATT-ATTATAAAAGTCTATATT
* *
523069 CTTGCACCTCAAATGAGCCAATCAAGGATTCTATTATTGTT
323 CTTG--CCTCAAATGAGCCAAACAAGGATTCTAGTATTGTT
523110 TGTTAGGATC
Statistics
Matches: 6242, Mismatches: 1118, Indels: 265
0.82 0.15 0.03
Matches are distributed among these distances:
469 8 0.00
470 65 0.01
471 640 0.10
472 73 0.01
473 151 0.02
474 691 0.11
475 1382 0.22
476 1621 0.26
477 542 0.09
478 429 0.07
479 204 0.03
480 434 0.07
481 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGG
GACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGC
TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTC
ATACTAATCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGAT
AATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATATTCTT
GCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTCATTCATTTTGTAATTAGGCACTATAA
ACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTACATGGAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCA
Found at i:523510 original size:13 final size:13
Alignment explanation
Indices: 523492--523517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
523482 TACACCAAGT
523492 ATGTATCGATACA
1 ATGTATCGATACA
523505 ATGTATCGATACA
1 ATGTATCGATACA
523518 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:523515 original size:32 final size:33
Alignment explanation
Indices: 523474--523537 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
523464 TAGCCAAACT
**
523474 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
523506 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
523538 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:525770 original size:21 final size:21
Alignment explanation
Indices: 525737--525786 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
525727 TTGCAAGTTG
*
525737 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
525759 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
525780 AAATAAA
1 AAATAAA
525787 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:530121 original size:476 final size:475
Alignment explanation
Indices: 528708--540180 Score: 12279
Period size: 476 Copynumber: 24.1 Consensus size: 475
528698 TAGGCACCAT
* * * *
528708 CATAAACTTAGTCTTCTCGTAAGGATGTATGATATTGATGCTTCGGTTTCTCAAGGAAA-GCTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAA-GAAAGGCTTT
* * * * * * * * *
528772 CTTC-CAGCAAATTGTTTTAAAAGTCTATGCTT-GGGCCTCGAATGAGCTAAACAAGTATTATAG
65 CTTCTGA-CCAATTATTAT-AAAGTCTATG-TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAG
* ** * * * * * * **
528835 TATTGTTCTTCTTTTGTTTTGTGATTAGCCACTATAAACATATTTTACTCTTTAGGATGAATTAT
127 TATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGAT
* * * * * *
528900 ATTGATGATTTTCTTTCCTTGAAAATCTTTTCTTTGCCGATATTTTCCTTAAAATCGAAGTTGAT
192 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT
* * *
528965 CTCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGACCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* * * * *
529030 AACACATCCCCATCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATT
321 AACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
529095 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
386 CCACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAAT
*
529160 CCCCATTCCTCTT-GGGATTAGGCAC
451 CCCCATT-CTTTTCGGGATTAGGCAC
* * * * *
529185 CATAAGCGTAGTCTTCTCATAAAGATACACGATAATGATGCTTTGGTTTCTCAAGAAAGGC-TTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * ** * * * *
529249 TTTCCT-ACCAATTTTTGTAAAGTCTAAATTCTTGCCACAAATGAGCCAAACATGGATTTTAGTA
66 -TT-CTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * * * * *
529313 TTGATT-ATCATTCATTTTGTTATTAGGCACTAAAAACACATTTTCCCCATTAGGATAAAATATA
129 TTG-TTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATA
* * * * * * *
529377 TTGATAATTTTCTTTACATGGAAATGTTTTCCTTCCCCTATTTTCCTTTAAATCAAAGATCATCC
193 TTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* ** * * * *
529442 CTTTAATAAGACATCCATCGATTCTCATAACAATCTCTACTT-TTTTCAAGATTAGGAACCAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGACCCAAAA
* * * * ** * * * **
529506 ACACTTTCCCATCTTTAGGGTACTTGACATTAATGCTCTGGTGTTGCAAGAAAATATTTTCTTTC
322 ACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
529571 CACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATAATAATC
387 CACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* *
529636 CCTATTCTTTTCAGGATTAGGCAC
452 CCCATTCTTTTCGGGATTAGGCAC
* * * * * *
529660 CATAAACGTAGTCTCCTCATAAGAATGCCTGATAATGATGCTTTGGTTTCTCTAGAAAAGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * *
529725 TTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCTCAAATTAGCCAATCAAGGATTCTAGCAT
66 TTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* *
529790 TGTTCTTCATTCATTTTGTAATTAGGC-CCATAAACACATTATCCTCATTAGGATAAAAGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * * *
529854 GATGATTTTCTTTTCTTGGAAATCTTTTTTTTGCCCTTATTTTCCTTTAAATCAAAGTTCGTCCC
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCC
* * *
529919 ATAAAATAAGACAAGCTTCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
259 -TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * * **
529984 GACATTCCATTCATTAGGATACACGACGTTGACACTTTGGTGTCGCAAGAAAAGCTTTT-TTTCC
323 CACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * *
530048 ACCATTTCTGATAGAATCATAGTTTGACTCTTAAATAAGACAATCATGAATGGTCATAGTAATCC
388 ACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCC
* *
530113 CCATTCTTTTCGAGATTGGGCAC
453 CCATTCTTTTCGGGATTAGGCAC
* *
530136 CATAAACGTAGTCTTCTCATAAGCATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * *
530201 TTCTGACCAATTATTAAAAAAGTTTATGTTCGTG-CTCAAATGAGCCAATCAAAGATTCTAGTAT
66 TTCTGACCAATTATT-ATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
** * * *
530265 TGTTCTTCATTTGTTTTGTGATTAGCCACTATAAACACATTATCCTCAGTAGGATAAATGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * * * **
530330 GGTGATTTTATTTTCATGAAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAAAGTTTGT-CC
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCC
* * **
530394 TCTAAAAAAGA-AATGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTATGACCCAAAA
259 T-TAAATAAGACAA-GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAA
* * * * ** *
530458 ACACATTCTCTTCATTAAGATACACGACATTGACT-CGTTGGAGTCATAAGTAAAGCTTTTCTTT
322 ACACATTCCCTTCATTAGGATACACGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
530522 CC-CCTGTTTTTGATAGAATCAATGTTT-ACCTCTTAAATAA-AGCAAATATTAATTGTCATACT
386 CCACC-GTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGA-CAAACATGAATGGTCATACT
* *
530584 AATCGCCATTCTTTTCGGGATTGGGCAC
448 AATCCCCATTCTTTTCGGGATTAGGCAC
* * * * *
530612 CATAAACATAGTCTTCTCATAAGGATGCATGATAATGATGAC-TTGGGTTCTTAAGAAAGGTTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATG-CTTTGGTTTCTCAAGAAAGGCTTT
* * * * *
530676 TTTCCGACCAATTATTATAAAAGTCTATATTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTG
65 CTTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * * * * * * * *
530741 TTGTTCTACATTTATTTTGTAATTAGACATTGTAAACACATTATCCTCACTATGATAAATGATAT
129 TTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATAT
*
530806 TGATGATTTTCTTTTCATGGAAATC-TTT-TTTGCCCTAATTTCCTTAAAATCAAAGTTCATCCC
194 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * * *
530869 TTCAATAAGACAAGCATCGATTCTGGTAACAATGTCCACTCTTTTTAAGATTGGGACCCAAAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
* * * *
530934 ACATTCCCTTCATTAGGAGACACGACATTAATGCTTTGGTGCCGCAAGACAAGCTTTTCTTTCCA
324 ACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
530999 CTGTTTTCGATAAAATCAAAGTTT-ACCTCTTAAATTAGACGACCATGAATGGTCATACTAATCC
389 CCGTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAATGGTCATACTAATCC
* *
531063 CCATGCTTTTCGGGATTAGTCAC
453 CCATTCTTTTCGGGATTAGGCAC
* *
531086 CATAAACGTAGTGTTCTCATAAGGATTCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
** * * * *
531151 TTCCAACCACTTATTATAAAGTCTATGTCCGTGCCTTAAATGAGCCAAACAAGGATTCTAGTGTT
66 TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* * * *
531216 GTTCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTATCCTCGTTAAGATAAACGATATTG
131 GTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATTG
* * * * * * * *
531281 ATAATTTTCTTATCATGGAAATCTTTTCTTTACTCTAATTTTGCTTAAAATTAATGTTCATCCTT
196 ATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * *
531346 TAAATAGGACAAACATCGATTCTCATAACAATCTCCGTTATTTTCAAGATTTGGG-CCCAAAAAC
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA-TTGGGACCCAAAAAC
* * *
531410 ACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGCCGCGAGAAAAGCTTTTCTTTCCG
324 ACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
531475 TCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACAAATATTAATGGTCATAGTAATCCC
389 CCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCCC
* *
531540 CATTCTTTTCGAGATTGGGCAC
454 CATTCTTTTCGGGATTAGGCAC
* * * *
531562 CATAATCGTAGTCTTCTCATAAGCATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * **
531627 TTCCGACCAATTATTAAAAAAGTCTATGTTCGTG-CTCAAATGAGCCAATTAAGGATTCTAGTAT
66 TTCTGACCAATTATT-ATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* ** * * * *
531691 TGTTCATCATTTGTTTTGTGATTAGCCACTATAAACACATTATCCTTAGTAGGATAAATGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * * *
531756 CATGATTTTATTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCAACCT
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCC
* * *
531821 TTAAAAAAGA-AATGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAA
259 TTAAATAAGACAA-GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
** * * * * * *
531885 CACATTCTTTTCATTAAGATACATGACATTGACT-CGTTGGAGTCAG-AAGTAAAGCTTTTGTTT
323 CACATTCCCTTCATTAGGATACACGACATTGA-TGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTT
* * *
531948 CC-CCTATTTTTGATAGAAT-AAATGTTT-ACCTCTTAAATAA-AGCAAATATTAATGGTCATAC
386 CCACC-GTTTTTGATAGAATCAAA-GTTTGA-CTCTTAAATAAGA-CAAACATGAATGGTCATAC
* * *
532009 TAATCGCTATTCTTTTCGGGATTGGGCAC
447 TAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * *
532038 CATAGACATAGTCTTCTCATAAGGATGCATGATAATGATGATTTGGTTTCTTAAGAAAGGCTTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* *
532103 TTCTGACCAATTATTATAAAAGTCTATGTTCATGCCAT-AAATAAGCCAAACAAGGATTCTAGTA
66 TTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCC-TCAAATGAGCCAAACAAGGATTCTAGTA
* ** * * * * * * * *
532167 CTGTTCAACATTCGTTTTGTAATTAGGCATTATAAAGACATTATCCTCAATAGAATAGATGATAT
129 TTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATAT
* *
532232 TGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTGCCCTAATTTTCCTTAAAATCATAGTTCAT
194 TGATGATTTTCTTTTCATGGAAATC--TTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCAT
* * ** * *
532297 CCCTTCAATTAGACAAGCATCGATTCTAATAACAATGTCCATTCTTTTTAAGATTGGGACCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* * * *
532362 AACACATTCCCTTCATTAGGATACACGACGTTGATGCTTTGGCGTCACAAGATAAGCTTTTCTTT
321 AACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TT
* * * *
532427 CCTCTTTTCTTTCCTCTGTTTTTAATAGAAACAAAGTTT-ACCTCTTAAGTAAGACAAACATGAA
385 --TC----C---AC-C-GTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAA
* *
532491 TGGTCATGCTAATCCCCATT-TTTTCCGGATTAGGCACCAC
438 TGGTCATACTAATCCCCATTCTTTTCGGGATTAGG---CAC
* * * *
532531 CATAAACATAGTCTTCTCATAAGGATGTATGACATTGATGCTTCGGTTTCTCAAGAAA-GCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
*** * * * *
532595 TTCTGACCAATTGCAATAAAGTCTAAGTTCATGCCTCAAACGAGCTAAACATA-GATTCTAGTAT
66 TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACA-AGGATTCTAGTAT
* * * * * * * *
532659 TGATCATCATTCATTTTGTTATTAGGCGCTAAAAACACATTCTCCTCATTAGAATAAAAGGTATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * ** *
532724 GATGATTTTCTTTCCATGGAAATGTTTTCCATGCCTTATTTTCCTTAAAATCAAAGTTCATCCCT
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * *
532789 TGAATAAGGCAACCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
* * * * ** * * * *
532854 CTTTCCCATCTTTGGGATACTTGACATTGATGCTCTAGTGTTGCTAGAAAAGCTTTTCTTTCCAC
325 CATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * ** *
532919 CGGTTTTGATAGAATCAAAGTTTGCCTCTTAAATATCACAAACATGAACGGTCATACTAATCCCC
390 CGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCC
* * *
532984 ATTTTTTTCTGGAATAGGCAC
455 ATTCTTTTCGGGATTAGGCAC
* * * ** *
533005 CATAAACGAAGTCTTCTCATAAGGATGCATGATAATAATGCTTTGGTTTCTCAAGATGGGCTTTA
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * *
533070 TTCCGACCAATTGTTATAAAAGTCTATGTTCGTGCCTTAAATGAGCCAAATAAGGATTCCAGTAT
66 TTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* * * * * ** *
533135 TGTTCTTCCTTCGTTTTGTGATCAGGCACGATAAACACATTTTTGTCATTAGGATAAATGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * * * * *
533200 GATGATTTTCTTTTCATTGAAATCTTTTTTTTGCACTTATTTTCTTTTAAATAAAAGTTCATCCC
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * * *
533265 TTAAATAAGA-ATAGAATTGACTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGTCCAAAAAA
259 TTAAATAAGACA-AGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * * ** * * *
533329 CACATTGCCTTCTTTAGGATACACAACATTGACACTTTGGTGTCGTAAGAAAAGATTTTCTTTCT
323 CACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* *
533394 ACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTGAATGG-CTATACTAATC
388 ACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTC-ATACTAATC
*
533458 CCCATTCTTTTCGGCATTAGGCAC
452 CCCATTCTTTTCGGGATTAGGCAC
* * * *
533482 CATAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTTAGTTTCTCAAGAATGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * * * * **
533547 TTCAGACCAATGATGATAAAGTCTAAGTTCGCGTCTCAAATAAGCCAAATGAGGATTCTAGTATT
66 TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* * * * ** *
533612 GATCTTCATTCTTTTTGTGATTAGGCACTATAAACAC--TATCTTCACTAATATAAATGATATTG
131 GTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATTG
* * * * *
533675 ACGATTTTCTTTTCATAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAAGTTTATCCTT
196 ATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCT
* *
533740 TAAAAAAGA-AA--AGC-ATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
* * **
533801 CATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTG-CTGCAAGGCAAGCTTTTCTTTCCA
325 CATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCA
** * * *
533865 TTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGCCATACTAATCCC
389 CCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCCC
* * *
533930 CATTCTTTCCCGGACTAGGCAC
454 CATTCTTTTCGGGATTAGGCAC
* * * ** *
533952 CGTAACCATTTTCTTCTCATAAGGATCCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * *
534017 TTCGGACAAATTAATATATAAAGTCTATGTTCGTGCCTCAAATGAGGCAAACATGGATTCTAGTA
66 TTCTGACCAATT-AT-TATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * *
534082 TTGTTCTTCATTCATTTTGAGATTAGGCACTATAAACATATTATCTTCATTAGGATAAAAGATAT
129 TTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATAT
* * *
534147 TAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATCAAAGTTAATCC
194 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCC
** * * ** * * *
534212 AATACATAAGACAACCATCGATTCTCAAAACGATATCCATTCTTTTCAAGATTAGGACCCAAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * *
534277 CACATTCCCTTCATTAGGATACACGACGTTGAT-CTTTCGTGTCAG-AAGACAAGCTTTTCTTTC
323 CACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTC
* * * * * *
534340 TACCGTTTTTGAAAGAATCAAAGTTT-ACCTCTTAACTATGACAAACATGAATGGCCATACTATT
387 CACCGTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAATGGTCATACTAAT
*
534404 CCCCATTCTTTTCGGGATTAGGTGCCAT
451 CCCCATTCTTTTCGGGATTA-G-G-CAC
** ** * * ** * *
534432 CATAAACACAACCTTCTCATAAGGATGTATGATATTGACGCTTCAGTTTTTCAAGAAAAGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * * * * *
534497 TTTTGAACAATTGTTAGAAAGTCTAAGTT-GATGCCTTAAATGAGCCAAACATGGATTCTAGTAC
66 TTCTGACCAATTATTATAAAGTCTATGTTCG-TGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* * * * * *
534561 TGATCATCATTCATTTTGTTATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAAAGATACT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * *
534626 GATGATTTT-TTTAT-ACGGAAATGTTTTCCTTGCCCTATTTTCCTT-AAATCAAAGTTCATCCC
195 GATGATTTTCTTT-TCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * *
534688 TTGAATAAGACAACCATCGATTCTCGTAACAATCTCTACTT-TTTTCAAGATTGGGAACCAAAAA
259 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGACCCAAAAA
* * ** * *
534752 CAC-TCTCCCATCCTTAGGATACTTGACATTGATGCTCTGGTGTCGAAAGAAAAGCTTTTCTTT-
323 CACAT-TCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
534815 CACCAATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGCCATACTAAT
387 CACC-GTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAAT
* * * *
534880 CCCCATTCTTTCCAGGACTAGGCAT
451 CCCCATTCTTTTCGGGATTAGGCAC
* * ** *
534905 CGTAACCGTTTTCTTCTCATAAGGATCCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * *
534970 TTCAGACAAATTATTATATAAAGTCTATGTTCGTGCCTCAAATGA-CGCAAACATGGATTCTAGT
66 TTCTGACCAATTA-T-TATAAAGTCTATGTTCGTGCCTCAAATGAGC-CAAACAAGGATTCTAGT
** * * * *
535034 ATTGTTCTTCATTCATTTTCAGATTAGGCACTATAAACATATTATCCTCATTAGGGTAAATGACA
128 ATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATA
* * *
535099 TTAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATGAAAGTTCATC
193 TTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATC
* * * ** * *
535164 CCTTAAGTAAGA-TAGCCATCAATTCTCAAAACGATATCCATTCTTTTCAAGATTGGGACCCAAA
257 CCTTAAATAAGACAAG-CATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* * ** *
535228 AACACATTCCCTTCATTAGGATACACGACGTTGAT-CTTTGGTGTTAG-AAGCCAAGCTTTTTTT
321 AACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTT
* * * *
535291 TCTACCGTTTTTGAAAGAATCAAAGTTT-ACCTCTTAACTAAGACAAACATGAATGGCCATACTA
385 TCCACCGTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAATGGTCATACTA
*
535355 TTCCCCATTCTTTTCGGGATTAGGCACC
449 ATCCCCATTCTTTTCGGGATTAGGCA-C
** ** * * * * *
535383 AACATAAACACAACCTTCTCATAAGGATGTATGATATTCATGCTTCGGTTTTTCAAGAAATGCTT
1 --CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTT
* * * * * *
535448 TCTTTTGACCAATTGTTATAAAGTCTAAGTTTGTGCCTTAAATGAGCCAAACATGGATTCTAGTA
64 TCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * * * * * * *
535513 CTGATCATCATTCATTTTGTTATTAGGCACTAAAAACACATTCTCCTTATTAGGATAAAAGATAC
129 TTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATAT
* * *
535578 TGATGATTTTCTTTACATGGAAATGTTTTCCTTGCCCTATTTTCCTT-AAATCAAAGTTCATCCC
194 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * * *
535642 TTGAATAAGACAACCATCGATTCTCGTAACAATCTCTACTT-TTTTCAAGATTGGGAACCACAAA
259 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGACCCAAAAA
* * *** * * *
535706 CAC-TCTCCCATCCTTAGGATACTTAACATTGATACTCTGGTGTCAG-AGGAAAAGCTTTTCTTT
323 CACAT-TCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTT
** * * *
535769 CCACAATTTTTGATAGAATCAAAGTTTGCCTCTTAAATTAGACAAATATGAATGGTCATACTAAT
386 CCACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAAT
*
535834 CCCCATT-TATTTCGGGATTAGGTAC
451 CCCCATTCT-TTTCGGGATTAGGCAC
* * ** * *
535859 CATAAACGTAGTCTTCTCATAAGGATGCACGATAATGACACTTTGGTTTCTCAATAAATGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* ** * *
535924 TTCTGACCATTTACAATAAATGTTTATGTTCGTGCCTCAAATGAGGCAAACAAGGATTCTAGTAT
66 TTCTGACCAATTATTATAAA-GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
** * *
535989 TGTTCTTCCCTCGTTTTGTGAATAGGCACTATAAACACATTATCCTCATTAGGATAAATA-ATAT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA-AGATAT
* * * * *
536053 TGATGATTTTCTTTTCATTGAAATCTTTTTTTTGCACTTATTTTCCTTTAAATCAAATTTCATCC
194 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
536118 CTTAAATAAGGCAATCATCGATTCTCATAACAATCTCCATTATTTTCATGATTGGGACCCAAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * * * * * *
536183 CACATTGCTTTCACTAGGATACATGACGTTGACGCTTTGGTGTCGAAAGAAAAGCTTTTCTTTCC
323 CACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
536248 ACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAACACAAACATGAATGGTCATACTAATCC
388 ACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCC
* **
536313 CCATTCCTTTCGGGCCTAGGCAC
453 CCATTCTTTTCGGGATTAGGCAC
** * * ** * *
536336 CATAAACAAAGTCTTCTCATAAGAAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* * * * *
536401 TTCAGACCAATTATTATAAAGTCTAAGTTTGTGCCTTAAATGAGCCAAACTAGGATTCTAGTATT
66 TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* * **
536466 -TATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTATCCTTATTAGGATAACTGATATT
131 GT-TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* *
536530 GATGATTTTCTTTTCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCT
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCC
* * * ** *
536595 TTAAAAAAGGCAAGCATCGATTCTCATAATGATCTCCATTCTTTTCAAGATTAGGACCCAAAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
* * ** * * *
536660 ACATTCCCTTCAATATGATACACGACATCAACG-TGTTGGTGTCGTAAGCAAAGCTTTTCTTTCC
324 ACATTCCCTTCATTAGGATACACGACATTGATGCT-TTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
536724 ACCGTTTTCT-ATAGAATGAAAGTTTGACTCATAAATAAGACAAACATGAATAGTCTTACCAATG
388 ACCGTTTT-TGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* *
536788 TCCATTCTTCTT-GGGATTAGGCAT
452 CCCATTCTT-TTCGGGATTAGGCAC
* * *
536812 CATAAGCGTAGTC-T-TC-T-----T--AT-A-A-TGATGCTTTGGTTTCTCAAGAAAAGCTTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
** * * * * *
536864 TTCCCACCAATTCTTGTAAAGTCAAAGTTCAG-GCCTCAAATGAGCCAAACACGGATTCTAGTAT
66 TTCTGACCAATTATTATAAAGTCTATGTTC-GTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* * * * * * * * **
536928 TGATCATAATTCATTTTGTTATTATGCCCTAAAAACATATTCCCCTCATTAGGATAAAAGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* ** ** *
536993 GAGGATTTTCTTTTCATGGAAATGATTTCCATGCCCTATTTTCCATAAAATCAAAGTTCATCCCT
195 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
537058 TGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACAAAAAACA
260 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
** * * * * * * *
537123 TTTTCCCTTCATTACGATACATGATAATGATGCATTGGTGTCACAAGAAAAGCTTTTATTTCCAC
325 CATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
537188 CGTTTTTGATAGAATCAAAGTTT-ACCTCTTAACTTAGACAAACGTGAATGGTCATACTAATCCC
390 CGTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAATGGTCATACTAATCCC
* *
537252 GATTCTTTTCAGGATTAGGCACC
454 CATTCTTTTCGGGATTAGGCA-C
* * * * *
537275 ATCATAAACATA-TCCTTCTTATAAGGATGTATGATATTGATGCTTTGGATTCTCAAGAAAGGGT
1 --CATAAACGTAGT-CTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCT
* * * *
537339 TTCTTTTGACCATTTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGT
63 TTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGT
* * ** * * * *
537404 ATTGATCATCATTCATTTCACT-ATTTGGCACTAAAAACACATTCTCCTTATTAGGATAAAAGAT
128 ATTGTTCTTCATTCATTT-TGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGAT
* * * * * * *
537468 GTTAATGATTTTCTTTACATGGAATTGTTTTCCTTGCCCTATTTTCCTTAAAATCAATGTTCATC
192 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * *
537533 CCTTGAAA-AAGACAACCATCGATTCTCGTAACTATATCCATTCTTTTGAAGATTAGGAATCCAA
257 CCTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-GGGACCCAA
* * * ** * * *
537597 AAACACTTTCCCATCTTTAGGATACTTGACATTGATACTCTGGTGTCACAAGAAAAGCTTTTCTT
320 AAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
537662 TCCACAGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATGAGATAAACATGAATGATCATACTAA
385 TCCACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAA
* * ***
537727 TCCCCATTTTTTTCGAGATTAGGTGT
450 TCCCCATTCTTTTCGGGATTAGGCAC
* * * *
537753 CGTAAATGTAGTATTCTCATAAGGATGCA-GAATAATGATGCTTTGGTTTCTCAAGAAAGGCTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATG-ATATTGATGCTTTGGTTTCTCAAGAAAGGCTTT
* * * * *
537817 TTTCTGACCAATTATTATAAAGTCTATATTCGTGCCTCAAATGAGCTAAACAAGGATCCTAGTGT
65 CTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTAT
* * * *
537882 TGTTCTTCACTCGTTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATTAATGATATT
130 TGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATT
* * *
537947 GATGACTTTT-TTATCATGGAAATCTTTTCTTTGCCCTTATTTT-GTTCAAAATCAAAGTTCAAC
195 GATGA-TTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTT-AAAATCAAAGTTCATC
** * * * * **
538010 CCAAAAATAAGACAAGCATCGATTCTCG-ATACAATTTCCACTCATTTCAAGATCGGGACTGAAA
257 CCTTAAATAAGACAAGCATCGATTCTCGTA-ACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* ** *
538074 AACACATTCCTTTCATTAGGATACACGACATTGACT-CTTTGAG-GTCAAAAGAAAAGCTTTTCA
321 AACACATTCCCTTCATTAGGATACACGACATTGA-TGCTTTG-GTGTCGCAAGAAAAGCTTTTCT
** * * * *
538137 TTCCTTCGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACTTGAATGGTCATACTA
384 TTCCACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTA
** ** * *
538202 ATCCTTATTCTTTTTTGGATTAAGCGC
449 ATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * ***
538229 TATAAACGTAGTGTTCTTATAAAGAAGCATGATATTGATGCTTCAATTTCTCAAGAATA-GCTTT
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAA-AGGCTTT
* * * *
538293 CTT-TAGACCAATTATTATAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAAGATTTTAGTA
65 CTTCT-GACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
*
538357 TTGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTATCCTCATTAGGATAAATA-ATA
129 TTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAA-AGATA
* *
538420 TTGA-GCATTTTCTTTTCATGGAACTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAAT
193 TTGATG-ATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCAT
* * *
538484 CCCTTAAAAAAGACAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* * * * *
538549 AACACATTCCCTTCACTATGATACATGACATTGATG-TCTTGGTGTCGTAAGGAAAGCTTTTCTT
321 AACACATTCCCTTCATTAGGATACACGACATTGATGCT-TTGGTGTCGCAAGAAAAGCTTTTCTT
* *
538613 TTCACCGTTTTTGA-ATGAATCAAAGTTTGACGCTTAAATAAGACAAACATGAATGGTCATACTA
385 TCCACCGTTTTTGATA-GAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTA
538677 ATCCCCATTCTTTTCGGGATTAGGCAC
449 ATCCCCATTCTTTTCGGGATTAGGCAC
*** * * * *
538704 CATGGCCGTAGTCTTCTCATAAGGATCCAAGATATTGATGCTTTAGTTTCTCAAGAATGGCTTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
* ** *
538769 TTCTGACCAATTATTATAAAGTCTATGTTCATGCCTTGAATGAGCCAATCAAGGATTCTAGTATT
66 TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
* * * *
538834 GTTCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTATCCTTATTAGGATAAATGATAGTG
131 GTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATTG
* * * * * *
538899 ATGACTTTCTTATCATGGAAATCTTTTC-TT-CGC---TTTGCTTAAAATCAAAGTTCACCCCTA
196 ATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * *
538959 AAATGACACAAGCATCGATTC-CTGTAACAATCTCCATTCATTTCAAGATTGGCACCGAAAAACA
261 AAATAAGACAAGCATCGATTCTC-GTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
* * * * *
539023 CATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATTCCAT
325 CATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
539088 CGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT
390 CGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCC
* *
539153 ATTCTTCTT-AGGATTAGGCCC
455 ATTCTT-TTCGGGATTAGGCAC
* * * * *** * *
539174 CATAAGCGTAGTCTTGTCGTAAGGATACCCAATAATGATGCTTTGGTTTCTCAA-AGAAGGCTTC
1 CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGA-AAGGCTTT
** * * * * * * *
539238 CTTCCCACCAATTTTTGT-AAGTCCAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTCTTGT
65 CTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGA-T-TCTAGT
* * * * * * * * * *
539302 ATTGATCATAATTTATTTTGTTATTATGCCCTAAAAACACATTCTCCTCATTAGGATAAAAGGTA
128 ATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATA
* * * ** * *
539367 TTGAGGATTATCGTTTCATGGAAATGATTTCCTTGCCCTATTTTCCATAAAATCAAAGTTCATCC
193 TTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
539432 CTTGAGTAA-ACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCGAGATTGGGAACCAAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
** ** * * * * * *
539496 CATTTTCTGTTCCTTAGGACACATGACATTGATGCATTGGTGTCACAAGAAAAGCTTTTATTTCC
323 CACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
539561 ACTGTTTTTGATAGAATCAAAGTTT-ACCTCTTAAATAAGACAAACGTAAATGGTCATACTAATC
388 ACCGTTTTTGATAGAATCAAAGTTTGA-CTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* *
539625 CCGATTCGTTTCGGGATTAGGCACC
452 CCCATTCTTTTCGGGATTAGGCA-C
** * * * **
539650 ATCATAAACACAGTCTTCTTATAAGGATGTATGATATTGATGCTTCGGAATCTCAAGAAAGGCTT
1 --CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTT
* * * ** *
539715 TCTTTTGAGCAATTATTATAAAGTCTATGTTCGTCCCTCAAATGAGTTAAACATGGATTCTAGTA
64 TCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTA
* * * * ** * * *
539780 TTGGTCGTAATTCATTTCGCT-ATTTCGCACTAAAAACACATTCTCCTCATTAGGATAAAAGATG
129 TTGTTCTTCATTCATTTTG-TGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATA
** * * * * *
539844 TTGATGATTTTCTTTAGATGGAAATGTTTTCCTTGCCCTATTTTCCTTGAAATCAAAATTCATCT
193 TTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* *
539909 CTTGAAA-AAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAA
258 CTT-AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAA
* * * ** *
539973 ACACTTTCCCATCTTTAGGATACTTGACATTGATAG-TCTGGTGTCGCAAGAAAAGCTTTTCTTT
322 ACACATTCCCTTCATTAGGATACACGACATTGAT-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
** * *
540037 CCATAGTTTTTGATAGAATCAAAGTTCGCCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
386 CCACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAAT
540102 CCCCAATT-TTTTCGGGATTAGGCAC
451 CCCC-ATTCTTTTCGGGATTAGGCAC
* * * *
540127 CATAAATGTAGTCTTCTCATAAGGATGCATAATGA-TGATGGTTTTGTTTCTCAA
1 CATAAACGTAGTCTTCTCATAAGGATGCATGAT-ATTGATGCTTTGGTTTCTCAA
540181 CGTCGTAACG
Statistics
Matches: 9166, Mismatches: 1598, Indels: 466
0.82 0.14 0.04
Matches are distributed among these distances:
461 4 0.00
462 182 0.02
463 177 0.02
464 3 0.00
465 10 0.00
466 3 0.00
467 1 0.00
468 1 0.00
469 34 0.00
470 492 0.05
471 100 0.01
472 77 0.01
473 202 0.02
474 550 0.06
475 1538 0.17
476 2607 0.28
477 1462 0.16
478 881 0.10
479 299 0.03
480 142 0.02
481 1 0.00
482 2 0.00
485 2 0.00
486 1 0.00
487 2 0.00
488 126 0.01
489 9 0.00
490 14 0.00
491 166 0.02
492 24 0.00
493 54 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
CATAAACGTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTC
TTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATT
GTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATTG
ATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACAC
ATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
GTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCA
TTCTTTTCGGGATTAGGCAC
Found at i:532435 original size:12 final size:12
Alignment explanation
Indices: 532418--532443 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
532408 ACAAGATAAG
532418 CTTTTCTTTCCT
1 CTTTTCTTTCCT
532430 CTTTTCTTTCCT
1 CTTTTCTTTCCT
532442 CT
1 CT
532444 GTTTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (12 bp):
CTTTTCTTTCCT
Found at i:540178 original size:953 final size:946
Alignment explanation
Indices: 528708--540180 Score: 12190
Period size: 953 Copynumber: 12.1 Consensus size: 946
528698 TAGGCACCAT
* * * * *
528708 CATAAACTTAGTCTTCTCGTAAGGATGTATGATATTGATGCTTCGGTTTCTCAAGGAAAGCTTTC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAA-GAAGGCTTTC
* * * * * * * *
528773 TTCC-AGCAAATTGTTT-TAAAAGTCTATGCTT-GGGCCTCGAATGAGCTAAACAAGTATTATAG
65 TTCCGA-CCAATT-TTTAT-AAAGTCTAAG-TTCGTGCCTCAAATGAGCCAAACATGGATTCTAG
* * * ** * * * * * * * **
528835 TATTGTTCTTCTTTTGTTTTGTGATTAGCCACTATAAACATATTTTACTCTTTAGGATGAATTAT
126 TATTGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGAT
* * * * * *
528900 ATTGATGATTTTCTTTCCTTGAAAATCTTTTCTTTGCCGATATTTTCCTTAAAATCGAAGTTGAT
191 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT
* * * *
528965 CTCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCACTCTTTTCAAGATTGGGACCCAAA
255 CCCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAA
* * * * *
529030 AACACATCCCCATCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCATT
320 AACACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTCACAAGAAAAGCTTTTCTTT
* ** * *
529095 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAAT
384 CCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
* * * * *
529160 CCCCATTCCTCTT-GGGATTAGGCACCATAAGCGTAGTCTTCTCATAAAGATACACGATAATGAT
449 CCCCATT-CTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGAT
* * ** * *
529224 GCTTTGGTTTCTCAAGAAAGGC-TTCTTTCCT-ACCAATTTTTGTAAAGTCTAAATTCTTGCCAC
513 GCTTTGGTTTCTCAAGAAAGGCTTTC-TT-CTGACCAATTATTATAAAGTCTATGTTCGTGCCTC
* * * * *
529287 AAATGAGCCAAACATGGATTTTAGTATTGATT-ATCATTCATTTTGTTATTAGGCACTAAAAACA
576 AAATGAGCCAAACAAGGATTCTAGTATTG-TTCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * * * * *
529351 CATTTTCCCCATTAGGATAAAAT-ATATTGATAATTTTCTTTACATGGAAATGTTTTCCTTCCCC
640 CATTATCCTCATTAGGAT-AAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC
* * * ** *
529415 TATTTTCCTTTAAATCAAAGATCATCCCTTTAATAAGACATCCATCGATTCTCATAACAATCTCT
704 TATTTTCCTTAAAATCAAAGTTCATCCC-TTAAAAAGACAAGCATCGATTCTCATAACAATCTCC
* * * * * * ** * *
529480 ACTT-TTTTCAAGATTAGGAACCAAAAACACTTTCCCATCTTTAGGGTACTTGACATTAATGCTC
768 A-TTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-TT
* ** * *
529544 TGGTGTTGCAAGAAAATATTTTCTTTCCACCGTTTTTGAGAGAATCAAAGTTTGCCTCTTAAATA
831 TGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATA
* * *
529609 AGACAAACATGAATGGTCATAATAATCCCTATTCTTTTCAGGATTAGGCAC
896 AGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * * *
529660 CATAAACGTAGTCTCCTCATAAGAATGCCTGATAATGATGCTTTGGTTTCTCTAGAAAAGCTTTC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAG-AAGGCTTTC
* * * * * *
529725 TTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCTCAAATTAGCCAATCAAGGATTCTAGCAT
65 TTCCGACCAATTTTTAT-AAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAT
* * * * *
529790 TGTTCTTCATTCATTTTGTAATTAGGC-CCATAAACACATTATCCTCATTAGGATAAAAGATATT
129 TGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* * * *
529854 GATGATTTTCTTTTCTTGGAAATCTTTTTTTTGCCCTTATTTTCCTTTAAATCAAAGTTCGTCCC
194 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCC
** * *
529919 ATAAAATAAGACAAGCTTCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
258 -TTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * * * ** *
529984 GACATTCCATTCATTAGGATACACGACGTTGACACTTTGGTGTCGCAAGAAAAGCTTTT-TTTCC
322 CACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * * * *
530048 ACCATTTCTGATAGAATCATAGTTTGA-CTCTTAAATAAGACAATCATGAATGGTCATAGTAATC
386 ACCGTTTTTGATAGAATCAAAGTTT-ACCTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* * *
530112 CCCATTCTTTTCGAGATTGGGCACCATAAACGTAGTCTTCTCATAAGCATGCATGATAATGATGC
450 CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGC
* *
530177 TTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAAAAAAGTTTATGTTCGTG-CTCAAA
515 TTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATT-ATAAAGTCTATGTTCGTGCCTCAAA
* * ** *
530241 TGAGCCAATCAAAGATTCTAGTATTGTTCTTCATTTGTTTTGTGATTAGCCACTATAAACACATT
579 TGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
530306 ATCCTCAGTAGGATAAATGATATTGGTGATTTTATTTTCATGAAAATCTTTTCTTTGCCCTGTTT
644 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTT
** * * *
530371 TCCTTAAAATCAAAAGTTTGTCCTCTAAAAAAGA-AATGCATCGATTCTCGTAACAATCCCCATT
709 TCCTTAAAATC-AAAGTTCATCC-CTTAAAAAGACAA-GCATCGATTCTCATAACAATCTCCATT
** * *
530435 CTTTTCAAGATTATGACCCAAAAACACATTCTCTTCATTAAGATACACGACATTGACTCG-TTGG
771 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA-T-GTTTGG
* ** * * * *
530499 AGTCATAAGTAAAGCTTTTCTTTCC-CCTGTTTTTGATAGAATCAATGTTTACCTCTTAAATAA-
834 TGTCGCAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAG
* * * * *
530562 AGCAAATATTAATTGTCATACTAATCGCCATTCTTTTCGGGATTGGGCAC
898 A-CAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * *
530612 CATAAACATAGTCTTCTCATAAGGATGCATGATAATGATGAC-TTGGGTTCTTAAGAAAGGTTTT
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATG-CTTTGGTTTCTCAAG-AAGGCTTT
* * * *
530676 TTTCCGACCAATTATTATAAAAGTCTATA-TTCGTGCCACAAATGAGCCAAACAAGGATTCTAGT
64 CTTCCGACCAATTTTTAT-AAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGT
* * * * * * * * * * *
530740 GTTGTTC-TACATTTATTTTGTAATTAGACATTGTAAACACATTATCCTCACTATGATAAATGAT
127 ATTGATCAT-CATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGAT
*
530804 ATTGATGATTTTCTTTTCATGGAAATC-TTT-TTTGCCCTAATTTCCTTAAAATCAAAGTTCATC
191 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
530867 CCTTCAATAAGACAAGCATCGATTCTGGTAACAATGTCCACTCTTTTTAAGATTGGGACCCAAAA
256 CCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAA
* * * * * *
530932 ACACATTCCCTTCATTAGGAGACACGACATTAATGCTTTGGTGCCGCAAGACAAGCTTTTCTTTC
321 ACACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * * * *
530997 CACTGTTTTCGATAAAATCAAAGTTTACCTCTTAAATTAGACGACCATGAATGGTCATACTAATC
385 CACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* * * * *
531062 CCCATGCTTTTCGGGATTAGTCACCATAAACGTAGTGTTCTCATAAGGATTCATGATATTGATGC
450 CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGC
** * * *
531127 TTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCACTTATTATAAAGTCTATGTCCGTGCCTTAAAT
515 TTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAAT
* *
531192 GAGCCAAACAAGGATTCTAGTGTTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTA
580 GAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTA
* * * * * * *
531257 TCCTCGTTAAGATAAACGATATTGATAATTTTCTTATCATGGAAATCTTTTCTTTACTCTAATTT
645 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT-ATTT
* * * * * * * *
531322 TGCTTAAAATTAATGTTCATCCTTTAAATAGGACAAACATCGATTCTCATAACAATCTCCGTTAT
709 TCCTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCATAACAATCTCCATTCT
531387 TTTCAAGATTTGGG-CCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGTG
773 TTTCAAGA-TTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-TTTGGTG
* * * *
531451 CCGCGAGAAAAGCTTTTCTTTCCGTCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACA
836 TCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
* * * * *
531516 AATATTAATGGTCATAGTAATCCCCATTCTTTTCGAGATTGGGCAC
901 AACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * *
531562 CATAATCGTAGTCTTCTCATAAGCATGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTT
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAG-AAGGCTTTC
* * * ** *
531627 TTCCGACCAATTATTAAAAAAGTCTATGTTCGTG-CTCAAATGAGCCAATTAAGGATTCTAGTAT
65 TTCCGACCAATT-TTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTAT
* ** * * * * * *
531691 TGTTCATCATTTGTTTTGTGATTAGCCACTATAAACACATTATCCTTAGTAGGATAAATGATATT
129 TGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* * * *
531756 CATGATTTTATTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCAACCT
194 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCC
* * * *
531821 TTAAAAAAGA-AATGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAA
258 TTGAATAAGACAA-GCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
** * * * * *
531885 CACATTCTTTTCATTAAGATACATGACATTGACT-CGTTGGAGTCAGAAGTAAAGCTTTTGTTTC
322 CACATTCCCTTCATTAGGATACATGACATTGA-TGC-TTGGTGTCACAAGAAAAGCTTTTCTTTC
* * *
531949 C-CCTATTTTTGATAGAAT-AAATGTTTACCTCTTAAATAA-AGCAAATATTAATGGTCATACTA
385 CACC-GTTTTTGATAGAATCAAA-GTTTACCTCTTAAATAAGA-CAAACATGAATGGTCATACTA
* * * * *
532011 ATCGCTATTCTTTTCGGGATTGGGCACCATAGACATAGTCTTCTCATAAGGATGCATGATAATGA
447 ATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGA
* * * *
532076 TGATTTGGTTTCTTAAGAAAGGCTTTTTTCTGACCAATTATTATAAAAGTCTATGTTCATGCCAT
512 TGCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCC-T
* * ** * * * *
532141 -AAATAAGCCAAACAAGGATTCTAGTACTGTTCAACATTCGTTTTGTAATTAGGCATTATAAAGA
575 CAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
532205 CATTATCCTCAATAGAATAGATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTGCC
640 CATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC--TTTTCTTTGCC
* ** * *
532270 CTAATTTTCCTTAAAATCATAGTTCATCCCTTCAATTAGACAAGCATCGATTCTAATAACAATGT
703 CT-ATTTTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGACAAGCATCGATTCTCATAACAATCT
* *
532335 CCATTCTTTTTAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACGTTGATGCT
766 CCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-T
* * * * * *
532400 TTGGCGTCACAAGATAAGCTTTTCTTTCCTCTTTTCTTTCCTCTGTTTTTAATAGAAACAAAGTT
830 TTGGTGTCGCAAGAAAAG-----CTTT--TC-TTTC---CATC-GTTTTTGATAGAATCAAAGTT
* * * *
532465 TACCTCTTAAGTAAGACAAACATGAATGGTCATGCTAATCCCCATT-TTTTCCGGATTAGGCACC
883 TGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGG---C
532529 AC
945 AC
* * * *
532531 CATAAACATAGTCTTCTCATAAGGATGTATGACATTGATGCTTCGGTTTCTCAAGAAAGCTTTCT
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAGGCTTTCT
* *** * * * *
532596 TCTGACCAATTGCAATAAAGTCTAAGTTCATGCCTCAAACGAGCTAAACATAGATTCTAGTATTG
66 TCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTG
* * * *
532661 ATCATCATTCATTTTGTTATTAGGCGCTAAAAACACATTCTCCTCATTAGAATAAAAGGTATTGA
131 ATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGA
* * ** *
532726 TGATTTTCTTTCCATGGAAATGTTTTCCATGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTG
196 TGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
* * * * *
532791 AATAAGGCAACCATCGATTCTCGTAACAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACT
261 AATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACA
* * * * * ** *
532856 TTCCCATCTTTGGGATACTTGACATTGATGCTCTAGTGTTGCTAGAAAAGCTTTTCTTTCCACCG
326 TTCCCTTCATTAGGATACATGACATTGATGCT-TGGTGTCACAAGAAAAGCTTTTCTTTCCACCG
* * ** *
532921 GTTTTGATAGAATCAAAGTTTGCCTCTTAAATATCACAAACATGAACGGTCATACTAATCCCCAT
390 TTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCAT
* * * * *
532986 TTTTTTCTGGAATAGGCACCATAAACGAAGTCTTCTCATAAGGATGCATGATAATAATGCTTTGG
455 TCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGG
** * * * *
533051 TTTCTCAAGATGGGCTTTATTCCGACCAATTGTTATAAAAGTCTATGTTCGTGCCTTAAATGAGC
520 TTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAATGAGC
* * * * * * * **
533116 CAAATAAGGATTCCAGTATTGTTCTTCCTTCGTTTTGTGATCAGGCACGATAAACACATTTTTGT
584 CAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCT
* * * *
533181 CATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGCACTTATTTTCTT
649 CATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCT
* * * * * *
533246 TTAAATAAAAGTTCATCCCTTAAATAAGA-ATAGAATTGACTCTCGTAACAATCTCCATTCTTTT
713 TAAAATCAAAGTTCATCCCTTAAA-AAGACA-AGCATCGATTCTCATAACAATCTCCATTCTTTT
* * * * * ** *
533310 CAAGATTGGGTCCAAAAAACACATTGCCTTCTTTAGGATACACAACATTGACACTTTGGTGTCGT
776 CAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA-TGTTTGGTGTCGC
* * * *
533375 AAGAAAAGATTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACT
840 AAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
*
533440 TGAATGG-CTATACTAATCCCCATTCTTTTCGGCATTAGGCAC
905 TGAATGGTC-ATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* *
533482 CATAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTTAGTTTCTCAAGAATGGCTTTC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAA-GGCTTTC
* ** * * * * *
533547 TTCAGACCAATGATGATAAAGTCTAAGTTCGCGTCTCAAATAAGCCAAATGA-GGATTCTAGTAT
65 TTCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAA-CATGGATTCTAGTAT
* * * * ** *
533611 TGATCTTCATTCTTTTTGTGATTAGGCACTATAAACAC-TATCT--TCACTAATATAAATGATAT
129 TGATCATCATTCATTTTGTTATTAGGCACTATAAACACAT-TCTCCTCATTAGGATAAAAGATAT
* * * *
533673 TGACGATTTTCTTTTCATAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAAGTTTATCC
193 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCC
* * * *
533738 TTTAAAAAAGA-AA--AGC-ATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
257 CTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * **
533799 CACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTG-CTGCAAGGCAAGCTTTTCTTTC
322 CACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTC-ACAAGAAAAGCTTTTCTTTC
** * * *
533863 CATTGTTTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGCCATACTAATC
385 CACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* * * * * * ** * *
533928 CCCATTCTTTCCCGGACTAGGCACCGTAACCATTTTCTTCTCATAAGGATCCATGATATTGATGC
450 CCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGC
* *
533993 TTTGGTTTCTCAAGAAAGGCTTTCTTCGGACAAATTAATATATAAAGTCTATGTTCGTGCCTCAA
515 TTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATT-AT-TATAAAGTCTATGTTCGTGCCTCAA
* * * *
534058 ATGAGGCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTGAGATTAGGCACTATAAACATAT
578 ATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * *
534123 TATCTTCATTAGGATAAAAGATATTAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTAT
643 TATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TAT
* * ** * * * * *
534188 TTCCCTTAAAATCAAAGTTAATCCAATACATAAGACAACCATCGATTCTCAAAACGATATCCATT
707 TTTCCTTAAAATCAAAGTTCATCCCTTA-AAAAGACAAGCATCGATTCTCATAACAATCTCCATT
* * * *
534253 CTTTTCAAGATTAGGACCCAAAAACACATTCCCTTCATTAGGATACACGACGTTGATCTTTCGTG
771 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGTTTGGTG
* * * * * * *
534318 TCAG-AAGACAAGCTTTTCTTTCTACCGTTTTTGAAAGAATCAAAGTTTACCTCTTAACTATGAC
836 TC-GCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * *
534382 AAACATGAATGGCCATACTATTCCCCATTCTTTTCGGGATTAGGTGCCAT
900 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTA-G-G-CAC
* ** * * ** * *
534432 CATAAACACAACCTTCTCATAAGGATGTATGATATTGACGCTTCAGTTTTTCAAGAAAAGCTTTC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAG-AAGGCTTTC
** * * * * *
534497 TTTTGAACAATTGTTAGAAAGTCTAAGTT-GATGCCTTAAATGAGCCAAACATGGATTCTAGTAC
65 TTCCGACCAATTTTTATAAAGTCTAAGTTCG-TGCCTCAAATGAGCCAAACATGGATTCTAGTAT
* *
534561 TGATCATCATTCATTTTGTTATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAAAGATACT
129 TGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* * *
534626 GATGATTTT-TTTAT-ACGGAAATGTTTTCCTTGCCCTATTTTCCTT-AAATCAAAGTTCATCCC
194 GATGATTTTCTTT-TCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * *
534688 TTGAATAAGACAACCATCGATTCTCGTAACAATCTCTACTT-TTTTCAAGATTGGGAACCAAAAA
258 TTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGACCCAAAAA
* * *
534752 CAC-TCTCCCATCCTTAGGATACTTGACATTGATGCTCTGGTGTCGA-AAGAAAAGCTTTTCTTT
322 CACAT-TCCCTTCATTAGGATACATGACATTGATGCT-TGGTGTC-ACAAGAAAAGCTTTTCTTT
* * *
534815 -CACCAATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGCCATACTAA
384 CCACC-GTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAA
* * * * * * ** * *
534879 TCCCCATTCTTTCCAGGACTAGGCATCGTAACCGTTTTCTTCTCATAAGGATCCATGATATTGAT
448 TCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGAT
* *
534944 GCTTTGGTTTCTCAAGAAAGGCTTTCTTCAGACAAATTATTATATAAAGTCTATGTTCGTGCCTC
513 GCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTA-T-TATAAAGTCTATGTTCGTGCCTC
* **
535009 AAATGA-CGCAAACATGGATTCTAGTATTGTTCTTCATTCATTTTCAGATTAGGCACTATAAACA
576 AAATGAGC-CAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
535073 TATTATCCTCATTAGGGTAAATGACATTAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCT
640 CATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCC-
* * * * * * * *
535138 TATTTCCCTTAAAATGAAAGTTCATCCCTTAAGTAAGA-TAGCCATCAATTCTCAAAACGATATC
704 TATTTTCCTTAAAATCAAAGTTCATCCCTTAA-AAAGACAAG-CATCGATTCTCATAACAATCTC
* *
535202 CATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACGTTGATCTTT
767 CATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGTTT
* ** * * * * * *
535267 GGTGTTAG-AAGCCAAGCTTTTTTTTCTACCGTTTTTGAAAGAATCAAAGTTTACCTCTTAACTA
832 GGTG-TCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATA
* *
535331 AGACAAACATGAATGGCCATACTATTCCCCATTCTTTTCGGGATTAGGCACC
896 AGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCA-C
* ** * * * * *
535383 AACATAAACACAACCTTCTCATAAGGATGTATGATATTCATGCTTCGGTTTTTCAAGAAATGCTT
1 --CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAG-AAGGCTT
** * * *
535448 TCTTTTGACCAATTGTTATAAAGTCTAAGTTTGTGCCTTAAATGAGCCAAACATGGATTCTAGTA
63 TCTTCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTA
* * * *
535513 CTGATCATCATTCATTTTGTTATTAGGCACTAAAAACACATTCTCCTTATTAGGATAAAAGATAC
128 TTGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATAT
* * *
535578 TGATGATTTTCTTTACATGGAAATGTTTTCCTTGCCCTATTTTCCTT-AAATCAAAGTTCATCCC
193 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * *
535642 TTGAATAAGACAACCATCGATTCTCGTAACAATCTCTACTT-TTTTCAAGATTGGGAACCACAAA
258 TTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGACCCAAAAA
* * * * * * *
535706 CAC-TCTCCCATCCTTAGGATACTTAACATTGATACTCTGGTGTCAGAGGAAAAGCTTTTCTTTC
322 CACAT-TCCCTTCATTAGGATACATGACATTGATGCT-TGGTGTCACAAGAAAAGCTTTTCTTTC
** * * *
535770 CACAATTTTTGATAGAATCAAAGTTTGCCTCTTAAATTAGACAAATATGAATGGTCATACTAATC
385 CACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATC
* * **
535835 CCCATT-TATTTCGGGATTAGGTACCATAAACGTAGTCTTCTCATAAGGATGCACGATAATGACA
450 CCCATTCT-TTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATG
* * * ** *
535899 CTTTGGTTTCTCAATAAATGCTTTCTTCTGACCATTTACAATAAATGTTTATGTTCGTGCCTCAA
514 CTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAA-GTCTATGTTCGTGCCTCAA
* ** * *
535964 ATGAGGCAAACAAGGATTCTAGTATTGTTCTTCCCTCGTTTTGTGAATAGGCACTATAAACACAT
578 ATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
536029 TATCCTCATTAGGATAAATAATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGCACTTAT
643 TATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTAT
* * * *
536094 TTTCCTTTAAATCAAATTTCATCCCTTAAATAAGGCAATCATCGATTCTCATAACAATCTCCATT
707 TTTCCTTAAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTCATAACAATCTCCATT
* * * * * * * *
536159 ATTTTCATGATTGGGACCCAAAAACACATTGCTTTCACTAGGATACATGACGTTGACGCTTTGGT
771 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-TTTGGT
* *
536224 GTCGAAAGAAAAGCTTTTCTTTCCA-CTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAACA
835 GTCGCAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGA
* **
536288 CAAACATGAATGGTCATACTAATCCCCATTCCTTTCGGGCCTAGGCAC
899 CAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * ** *
536336 CATAAACAAAGTCTTCTCATAAGAAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTT
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAA-GGCTTTC
* * * *
536401 TTCAGACCAATTATTATAAAGTCTAAGTTTGTGCCTTAAATGAGCCAAAC-TAGGATTCTAGTAT
65 TTCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAT-GGATTCTAGTAT
* * * * * * **
536465 TTATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTATCCTTATTAGGATAACTGATATT
129 TGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* *
536530 GATGATTTTCTTTTCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCT
194 GATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCC
* * * * ** *
536595 TTAAAAAAGGCAAGCATCGATTCTCATAATGATCTCCATTCTTTTCAAGATTAGGACCCAAAAAC
258 TTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
* * * ** ** *
536660 ACATTCCCTTCAATATGATACACGACATCAACGTG-TTGGTGTCGTAAGCAAAGCTTTTCTTTCC
323 ACATTCCCTTCATTAGGATACATGACATTGA--TGCTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * * * *
536724 ACCGTTTTCT-ATAGAATGAAAGTTTGA-CTCATAAATAAGACAAACATGAATAGTCTTACCAAT
386 ACCGTTTT-TGATAGAATCAAAGTTT-ACCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
** * *
536787 GTCCATTCTTCTT-GGGATTAGGCATCATAAGCGTAGTC-T-TC-------T---T-ATAATGAT
449 CCCCATTCTT-TTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGAT
* * ** * * * *
536838 GCTTTGGTTTCTCAAGAAAAGCTTTTTTCCCACCAATTCTTGTAAAGTCAAAGTTCAG-GCCTCA
513 GCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTC-GTGCCTCA
* * * * * * * * *
536902 AATGAGCCAAACACGGATTCTAGTATTGATCATAATTCATTTTGTTATTATGCCCTAAAAACATA
577 AATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * ** **
536967 TTCCCCTCATTAGGATAAAAGATATTGAGGATTTTCTTTTCATGGAAATGATTTCCATGCCCTAT
642 TTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTAT
* * *
537032 TTTCCATAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
707 TTTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGACAAGCATCGATTCTCATAACAATCTCCATT
* * * ** * * * * *
537097 ATTTTCAAGATTGGGAACAAAAAACATTTTCCCTTCATTACGATACATGATAATGATGCATTGGT
771 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-TTTGGT
* * * * * *
537162 GTCACAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAACTTAGAC
835 GTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * *
537227 AAACGTGAATGGTCATACTAATCCCGATTCTTTTCAGGATTAGGCACC
900 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCA-C
* * * *
537275 ATCATAAACATA-TCCTTCTTATAAGGATGTATGATATTGATGCTTTGGATTCTCAAGAAAGGGT
1 --CATAAACATAGT-CTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAG-AAGGCT
**
537339 TTCTTTTGACC-ATTTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAG
62 TTCTTCCGACCAATTT-TTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAG
*** * * *
537403 TATTGATCATCATTCATTTCACTATTTGGCACTAAAAACACATTCTCCTTATTAGGATAAAAGAT
126 TATTGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGAT
* * * * * * *
537468 GTTAATGATTTTCTTTACATGGAATTGTTTTCCTTGCCCTATTTTCCTTAAAATCAATGTTCATC
191 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * * * *
537533 CCTTGAAAAAGACAACCATCGATTCTCGTAACTATATCCATTCTTTTGAAGATTAGGAATCCAAA
256 CCTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATT-GGGACCCAAA
* * * * *
537598 AACACTTTCCCATCTTTAGGATACTTGACATTGATACTCTGGTGTCACAAGAAAAGCTTTTCTTT
320 AACACATTCCCTTCATTAGGATACATGACATTGATGCT-TGGTGTCACAAGAAAAGCTTTTCTTT
* * * * *
537663 CCACAGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATGAGATAAACATGAATGATCATACTAAT
384 CCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
* * *** * * *
537728 CCCCATTTTTTTCGAGATTAGGTGTCGTAAATGTAGTATTCTCATAAGGATGCA-GAATAATGAT
449 CCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATG-ATAATGAT
* *
537792 GCTTTGGTTTCTCAAGAAAGGCTTTTTTCTGACCAATTATTATAAAGTCTATATTCGTGCCTCAA
513 GCTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAA
* * * * *
537857 ATGAGCTAAACAAGGATCCTAGTGTTGTTCTTCACTCGTTTTGTGATTAGGCACTATAAACACAT
578 ATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
537922 TATCCTCATTAGGATTAATGATATTGATGACTTTT-TTATCATGGAAATCTTTTCTTTGCCCTTA
643 TATCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TA
* * ** *
537986 TTTT-GTTCAAAATCAAAGTTCAACCCAAAAATAAGACAAGCATCGATTCTCGAT-ACAATTTCC
706 TTTTCCTT-AAAATCAAAGTTCATCCCTTAAA-AAGACAAGCATCGATTCTC-ATAACAATCTCC
* * * ** * *
538049 ACTCATTTCAAGATCGGGACTGAAAAACACATTCCTTTCATTAGGATACACGACATTGACTCTTT
768 ATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGA-TGTTT
** * * * *
538114 GAG-GTCAAAAGAAAAGCTTTTCATTCCTTCGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATA
832 G-GTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATA
* * ** ** * *
538178 AGAAAAACTTGAATGGTCATACTAATCCTTATTCTTTTTTGGATTAAGCGC
896 AGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
* * * * * * *** *
538229 TATAAACGTAGTGTTCTTATAAAGAAGCATGATATTGATGCTTCAATTTCTCAAGAATAGCTTTC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAA-GGCTTTC
** * * ** *
538294 TTTAGACCAATTATTATAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACAAAGATTTTAGTATT
65 TTCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATT
* * *
538359 GATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTATCCTCATTAGGATAAATA-ATATT
130 GATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-AGATATT
* *
538422 GA-GCATTTTCTTTTCATGGAACTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCC
194 GATG-ATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCC
* * * *
538486 CTTAAAAAAGACAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
257 CTTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * ** * *
538551 CACATTCCCTTCACTATGATACATGACATTGATGTCTTGGTGTCGTAAGGAAAGCTTTTCTTTTC
322 CACATTCCCTTCATTAGGATACATGACATTGATG-CTTGGTGTCACAAGAAAAGCTTTTCTTTCC
*
538616 ACCGTTTTTGA-ATGAATCAAAGTTTGA-CGCTTAAATAAGACAAACATGAATGGTCATACTAAT
386 ACCGTTTTTGATA-GAATCAAAGTTT-ACCTCTTAAATAAGACAAACATGAATGGTCATACTAAT
*** * * *
538679 CCCCATTCTTTTCGGGATTAGGCACCATGGCCGTAGTCTTCTCATAAGGATCCAAGATATTGATG
449 CCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATG
* * * **
538744 CTTTAGTTTCTCAAGAATGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCATGCCTTGAA
514 CTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAA
* *
538809 TGAGCCAATCAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACAAATT
579 TGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
538874 ATCCTTATTAGGATAAATGATAGTGATGACTTTCTTATCATGGAAATCTTTTC-TT-CGC---TT
644 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
538934 TGCTTAAAATCAAAGTTCA-CCCCTAAAATGACACAAGCATCGATTC-CTGTAACAATCTCCATT
709 TCCTTAAAATCAAAGTTCATCCCTTAAAA--AGACAAGCATCGATTCTC-ATAACAATCTCCATT
* * * * *
538997 CATTTCAAGATTGGCACCGAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGT
771 CTTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATG-TTTGGT
* * *
539062 GTCACAAGAAAAGCTTTTCATTCCATCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAAGAC
835 GTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
* * * *
539127 AAACATGAATAGTCATACTAATCCCTATTCTTCTT-AGGATTAGGCCC
900 AAACATGAATGGTCATACTAATCCCCATTCTT-TTCGGGATTAGGCAC
* * * * * *** * *
539174 CATAAGCGTAGTCTTGTCGTAAGGATACCCAATAATGATGCTTTGGTTTCTCAAAGAAGGCTTCC
1 CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTC-AAGAAGGCTTTC
* * * * *
539239 TTCCCACCAATTTTTGT-AAGTCCAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTCTTGTA
65 TTCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGA-T-TCTAGTA
* * * * * *
539303 TTGATCATAATTTATTTTGTTATTATGCCCTAAAAACACATTCTCCTCATTAGGATAAAAGGTAT
128 TTGATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATAT
* * * ** * *
539368 TGAGGATTATCGTTTCATGGAAATGATTTCCTTGCCCTATTTTCCATAAAATCAAAGTTCATCCC
193 TGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* * * *
539433 TTGAGTAA-ACAAGTATCGATTCTCGTAACAATCTCCATTCTTTTCGAGATTGGGAACCAAAAAC
258 TTGAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
** ** * * *
539497 ATTTTCTGTTCCTTAGGACACATGACATTGATGCATTGGTGTCACAAGAAAAGCTTTTATTTCCA
323 ACATTCCCTTCATTAGGATACATGACATTGATGC-TTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * *
539562 CTGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACGTAAATGGTCATACTAATCCC
387 CCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCC
* * ** * * *
539627 GATTCGTTTCGGGATTAGGCACCATCATAAACACAGTCTTCTTATAAGGATGTATGATATTGATG
452 CATTCTTTTCGGGATTAGGCA-C--CATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATG
* ** * * *
539692 CTTCGGAATCTCAAGAAAGGCTTTCTTTTGAGCAATTATTATAAAGTCTATGTTCGTCCCTCAAA
514 CTTTGGTTTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAA
** * * * * * ** *
539757 TGAGTTAAACATGGATTCTAGTATTGGTCGTAATTCATTTCGCT-ATTTCGCACTAAAAACACAT
579 TGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTG-TGATTAGGCACTATAAACACAT
* * * ** * *
539821 TCTCCTCATTAGGATAAAAGATGTTGATGATTTTCTTTAGATGGAAATGTTTTCCTTGCCCTATT
643 TATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATT
* * * * *
539886 TTCCTTGAAATCAAAATTCATCTCTTGAAAAAGACAACCATCGATTCTCGTAACAATCTCCATTC
708 TTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGACAAGCATCGATTCTCATAACAATCTCCATTC
* * * * ** *
539951 TTTTCAAGATTGGGAACCAAAAACACTTTCCCATCTTTAGGATACTTGACATTGATAGTCTGGTG
772 TTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGAT-GTTTGGTG
* *
540016 TCGCAAGAAAAGCTTTTCTTTCCATAGTTTTTGATAGAATCAAAGTTCGCCTCTTAAATAAGACA
836 TCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
540081 AACATGAATGGTCATACTAATCCCCAATT-TTTTCGGGATTAGGCAC
901 AACATGAATGGTCATACTAATCCCC-ATTCTTTTCGGGATTAGGCAC
** * * *
540127 CATAAATGTAGTCTTCTCATAAGGATGCATAATGA-TGATGGTTTTGTTTCTCAA
1 CATAAACATAGTCTTCTCATAAGGATGCATGAT-ATTGATGCTTTGGTTTCTCAA
540181 CGTCGTAACG
Statistics
Matches: 8876, Mismatches: 1415, Indels: 460
0.83 0.13 0.04
Matches are distributed among these distances:
938 206 0.02
939 118 0.01
940 105 0.01
941 333 0.04
942 4 0.00
943 3 0.00
944 46 0.01
945 425 0.05
946 57 0.01
947 407 0.05
948 413 0.05
949 262 0.03
950 790 0.09
951 1128 0.13
952 1135 0.13
953 1698 0.19
954 614 0.07
955 330 0.04
956 5 0.00
957 4 0.00
958 2 0.00
960 7 0.00
962 2 0.00
963 4 0.00
964 3 0.00
965 124 0.01
966 19 0.00
967 434 0.05
968 147 0.02
969 51 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (946 bp):
CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCTCAAGAAGGCTTTCT
TCCGACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATTCTAGTATTG
ATCATCATTCATTTTGTTATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGA
TGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
AATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACA
TTCCCTTCATTAGGATACATGACATTGATGCTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT
TTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATT
CTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGT
TTCTCAAGAAAGGCTTTCTTCTGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCA
AACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCA
TTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
AATCAAAGTTCATCCCTTAAAAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGA
TTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGTTTGGTGTCGCAAGAAA
AGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATG
GTCATACTAATCCCCATTCTTTTCGGGATTAGGCAC
Found at i:543257 original size:13 final size:13
Alignment explanation
Indices: 543239--543263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
543229 CAAAGATCAG
543239 TGTATCGATACAA
1 TGTATCGATACAA
543252 TGTATCGATACA
1 TGTATCGATACA
543264 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:543326 original size:13 final size:13
Alignment explanation
Indices: 543308--543359 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
543298 AGCTTCGTAG
543308 CGATACATTGTAT
1 CGATACATTGTAT
543321 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
543340 CGATACATTGTAT
1 CGATACATTGTAT
543353 CGATACA
1 CGATACA
543360 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:543340 original size:19 final size:19
Alignment explanation
Indices: 543316--543380 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
543306 AGCGATACAT
543316 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
543335 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
543348 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
543367 TGTATCGATA-AAAA
1 TGTATCGATACAAAA
543381 TTGTTGAAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 4 0.10
19 21 0.54
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:543349 original size:32 final size:32
Alignment explanation
Indices: 543308--543376 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
543298 AGCTTCGTAG
543308 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
543340 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
543372 CGATA
1 CGATA
543377 AAAATTGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:545666 original size:475 final size:473
Alignment explanation
Indices: 544431--551193 Score: 7085
Period size: 475 Copynumber: 14.2 Consensus size: 473
544421 TTGGTGTCAC
* * *
544431 AAGTTTACCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCT-AGGGATTA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCA-GGATTA
* * ** ** * ** *
544495 GGCACCATCAGCGCAGTCTTCTCATAATAATACCCGATAATGATGC-TCTGGTTTCTCAAGAAAG
65 GGCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTC-GGTTTCTCAAGAAAG
* * * * ** * *
544559 G-TTTCCTTCCCACCAATTTTTGTGAAGT-TAAAGTTCATGCCTCAAATAAGCCAAACATGGATT
129 GCTTT-CTT-CTACCAATTATTATAAAGTCT-AAGTTTGTACCTCAAATGAGCCAAACATGGATT
* * * * * * * ** *
544622 CTAGTATTAATCATAATTCACTTTGTTATTATGCCCTAAAAACACATTCCCCTCATTAAGATAAA
191 CTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAA
* * * * *
544687 AGATATTGAGGATTTTGTTTTCATGGAAA-CAATTTCCTTGCCCTACTTTCCATAAAATCAAAGT
256 AGATATTGATGATTTTCTTTTCATGGAAATC-TTTTCCTTGCCCTATTTTCCTTAAAATCAAAGT
* ** * *
544751 TCATCTCTTAAATAAGACAAGAATCGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGAAC
320 TCATCCCTTAAA-AAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAAC
*
544816 CAAAAACACTTTCCCTTCATTAGGATACAGGACATTGATGC-ATTGGTGTCACAA-AAAAGCTTT
384 CAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTA-TGGTGTCACAAGAAAAGCTTT
* *
544879 TATTTCCACCGTTTTTGATAGAATCA
448 TCTTTCCACAGTTTTTGATAGAATCA
* * * *
544905 AAGTTTACCTCTTAACA-AAGACAAACGTGAATGGTCATACTAATCCCGATTCGTTTTGA-GATT
1 AAGTTTGCCTCTTAA-ATAAGACAAACATGAATGGTCATACTAATCCCCATTC-TTTTCAGGATT
* * * * * *
544968 AGGCACCATCATAAACACAGTCTTCTCATAAGGATGTATGATATTGATGGTTCAGATTCTCTAGA
64 AGGCA-C--CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGA
* *
545033 AAGGCTTTCTTTTGACCAATTATTATAAAGTCTAAGTTCGTACCTCAAATGAGCCAAACATGGAT
126 AAGGCTTTCTTCT-ACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGAT
* * * * * *
545098 TCTAGTATTGATCGTCATTTATTTCGCT-ATTTGGCACTAAAAACACATTCTCCTTATTAGGATA
190 TCTAGTATTGATCTTCATTCATTTTG-TGATTAGGCACTAAAAACACATTATCCTCATTAGGATA
* * *
545162 AAAGATGTTGATGATTTTCTTTACATGGAAATGTTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
254 AAAGATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
* *
545227 TTCATCTCTTGAAAAAGACAACCATTGATTCTCGTAACATTCTCCATTCTTTTCAAGATTGGGAA
319 TTCATCCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA
* * * ** * * *
545292 CCAAAAACAGTTTCCCATCCTTAGGATACTTGACATTGATACTAAGGTGTCGCAAGAAAAGCTTT
383 CCAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTT
545357 TCTTTCCACAGTTTTTGATAGAATCA
448 TCTTTCCACAGTTTTTGATAGAATCA
* * * *
545383 AAGTTTGCCTCTTAAAAAAGACAAACTTGAATGGTCATACTAATCCTCATTCTTTTCAGGATTAA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
** * * * * *
545448 GTGCCATAAACATAGTCTTCTCATAAGGAAGCATGATGTTAATGCTTCAGTTTCTCAAGAATGGC
66 GCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGGC
* * * *
545513 TTTCTTCATACCAATTATTATAAAGTTTAAGTTTGCACCTCAAATGAGCCAAACAAGGATTCCAG
131 TTTCTTC-TACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCTAG
* * * * * * *
545578 TACTAATCTTCATTCATTTTGTGATTAGGCACCATAAGCACATTATCGTCATTAGGATAAATGAT
195 TATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAGAT
* *
545643 ATTGATGATTTTCTTTTCATGGAACTCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAAGTTCAT
260 ATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATC-AAAGTTCAT
* * * *
545708 CCCTTAAAAAAGACAATCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGAG-ACCTAA
324 CCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACC-AA
* * * * ** *
545772 AAACACATTCTCTTCATTATGAAACACGACATTGGCGGGT-TGGTGTCACAAGAAAAGCTTTTCT
387 AAACACTTTCCCTTCATTAGGATACACGACATT-GATGCTATGGTGTCACAAGAAAAGCTTTTCT
*
545836 TTCCACCA-TTTTTTATAGAATCA
451 TTCCA-CAGTTTTTGATAGAATCA
* * *
545859 AAGTTTGACACTTAAATAAGAAAAACATGAATGGTCATACTAATCCCCATTCTTTTC-GAGATTA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAG-GATTA
* * * ** * *
545923 GGCACCATGACCGTAGTCTTCTTGTAAGGAT-CGATGATATTGATGCTTTGGTTTCTCAAGAATG
65 GGCACCATAAACATAGTCTTCTCATAAGGATGC-ATGATATTGATGCTTCGGTTTCTCAAGAAAG
* * ** * *
545987 GCTTTCTTCTGACCAATTATTAT-AACTCTATGTTCATGCCTCGAATGAGCCAAACATGGATTCT
129 GCTTTCTTCT-ACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCT
* * * * *
546051 AGTATTGTTC-TCATTCATTTTGTGATTAGGCACTATAAAGAAATTATCCTCATTAGGATAAATG
193 AGTATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAG
* * * *
546115 ATATTGATGACTTTCTTATT-ATGGAAATCTTTTCTTTTCCCTTATTTTGCTTAAAATCAAAGTT
258 ATATTGATGATTTTCTT-TTCATGGAAATCTTTTCCTTGCCC-TATTTTCCTTAAAATCAAAGTT
* * * * * *
546179 CA-CCCCTAAAATTACAGAAGCA-TCAGTTCTCGTAACAATCTCCATTCACTTT-AAGATTGGG-
321 CATCCCTTAAAA--AGACAACCATTGA-TTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGA
* * * *
546240 ACTGAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCT
382 AC-CAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCT
* * *
546305 TTTCATTCCATC-CTTTTTGATAGAATTA
446 TTTCTTTCCA-CAGTTTTTGATAGAATCA
* *
546333 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTCTT-GGGATTA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTT-TTCAGGATTA
* * * ** * *
546397 GGCACCATAAGCGTAGTCTTCTCATAAGGATACCCGATAATGATGCTTTGGTTTCTCAAGAAAGG
65 GGCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGG
* * * * ** * *
546462 CTTCCTTCT-CGCAAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGCCAAACATGGATTCT
130 CTTTCTTCTAC-C-AATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCT
* * * * * *
546526 AGTATTGATCATAATTCACTTTGAT-ATTACGTC-CTAAAAACATATTCTCCTCATTAGGATAAA
193 AGTATTGATCTTCATTCATTTTG-TGATTA-GGCACTAAAAACACATTATCCTCATTAGGATAAA
* * ** * * *
546589 AGATATTAAGGATTTTCTTTTCATGGAAATGATTTCCTTGCCCTACTTTCCATAAAATCGAAGTT
256 AGATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTT
* * ** * *
546654 CATCCCTTGAATAAGACAAGCACCGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAAAC
321 CATCCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACC
*
546719 AAAAACACTTTCCCTTCATTAGGATACATGACATTGATGC-ATTGGTGTCACAAGAAAAGCTTTT
385 AAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTA-TGGTGTCACAAGAAAAGCTTTT
* * * *
546783 ATTTCCACCGTTTTTGGTAAAATCA
449 CTTTCCACAGTTTTTGATAGAATCA
* * * * * * *
546808 AAGTTTACCTCTTAACA-AGGACAAACGTGAATGGTCATACAAATCCCGATTCGTTTCGGGATTA
1 AAGTTTGCCTCTTAA-ATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTA
* * *
546872 GGCACCATCATAAACACAGTCTTCTCATAAGGATGTATGATATTGATGCTTCGGATTCTCAAGAA
65 GGCA-C--CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAA
* * * *
546937 AGGCTTTCTTTTGACCAATTACTATAAAGTCTAAGTTCGTACCTCAAGTGAGCCAAACATGGATT
127 AGGCTTTCTTCT-ACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATT
* * *
547002 CTAGTATTGATCGTT-ATTCATTTCGCT-ATTTGGCACTAAAAACACATTCTCCTCATTAGGATA
191 CTAGTATTGATC-TTCATTCATTTTG-TGATTAGGCACTAAAAACACATTATCCTCATTAGGATA
* * * * *
547065 AAAGATGTTGAAGATTTTCTTTACATGGAAATGTTTTCCTTGCCCTATTTTCATTAAAATCAAAG
254 AAAGATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAG
*
547130 TTCATCTCTTCAAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA
319 TTCATCCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA
* * ** * * * **
547195 CCAAAAACACTTTCCCATCTTTAGGATACTTGACATTGATACTAAGTTGTTGCAAGAAAAGCTTT
383 CCAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTT
547260 TCTTTCCACAGTTTTTGATAGAATCA
448 TCTTTCCACAGTTTTTGATAGAATCA
* * * *
547286 AAGTTTGCCTCTTAAATAAGACAAACTTGAATGGTCATACTAATCCTCATTCTTTTCGGGATTAA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * *
547351 GCACCATAAACATTA-TCTTCTCATAAGGAAGCATGATATTGATGCTTCAGTTTCTCATGAATGG
66 GCACCATAAACA-TAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGG
* *
547415 CTTTCTTCATACCAATTATTATAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACAAGGATTCTA
130 CTTTCTTC-TACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCTA
* * * * * * *
547480 GTATTGATCTTCATTCATATTGTGATTAGGCACCATAAGCACATTATCGTCATTAGGGTAAATGA
194 GTATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAGA
* *
547545 TATTGATGATTTTCTTTTCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCA
259 TATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATC-AAAGTTCA
* * *
547610 TCCCTTAAAAAGGA-AAGCCATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGACCCA
323 TCCCTTAAAAA-GACAA-CCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCA
* * * * * *
547674 AAAACACATTCTCTTCACTATGATACACGACATTGACG-TGTCGGTGTCACAAGAAAAGCTTTTC
386 AAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTAT-GGTGTCACAAGAAAAGCTTTTC
* *
547738 TTTTCACTGTTTTTGATAGAATCA
450 TTTCCACAGTTTTTGATAGAATCA
* * * * * **
547762 AAGCTTGACGCTTAAATAAGACAAACATGAATGGTTACACTAATCCCCATTCTTTTTGGGATTAG
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * *
547827 GCACCAT-AACTGTAGTCTTCTCATAAGGATCCACGATATTGATGCTTTGGTTTCTCAAGAATGG
66 GCACCATAAAC-ATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGG
* ** * * *
547891 CTTTCTTCTGACCAATTATTAT-AAGTCTATG-TTCAAGCCTCGAATGAGCCAAAAAAGGATTCT
130 CTTTCTTCT-ACCAATTATTATAAAGTCTAAGTTTGTA-CCTCAAATGAGCCAAACATGGATTCT
* * * * *
547954 AGTATTGTTCTTCATTCATTTTCTGATTAGGCACTATAAACAAATTATCCTCATTAGGATAAATG
193 AGTATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAG
* * * * *
548019 ATATTGATGACTTTCTTATCGTGGAAATCTTTTCTTTGCCCTTATTATT-CTCAAAATCAAAGTT
258 ATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCC-TATT-TTCCTTAAAATCAAAGTT
* * ** * *
548083 CATCCC-TAAAATGATACAAGCATCAATTCTCGTAACAATCTCCATTCATTACAAGATTGGG-AC
321 CATCCCTTAAAA--AGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAAC
* * * *
548146 CGAAAAACACATTCCTTTCATTAGGATACACGACAATGATGCTTTGGTGTCACAAGAAAAGCTTT
384 C-AAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTT
* *
548211 TCATTCCATC-GTTTTTGATAGAATTA
448 TCTTTCCA-CAGTTTTTGATAGAATCA
* * *
548237 AAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCTTTCTTCT-AGGGATTA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCA-GGATTA
* * ** * * *** * * *
548301 GGCACCATCAGCGCAGTCTTCTCATAAGAATACCCAATAATGATGC-TCTGGTTTCTAAAGAAAA
65 GGCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTC-GGTTTCTCAAGAAAG
* ** * * * * ** *
548365 G-TTCCTTCCCGCCAATTTTTGTGAAGTCAAAGTTCATGCCTCAAATGAGCCAAACATGGATTCT
129 GCTTTCTT-CTACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCT
* * * * * * **
548429 AGTATTGATCATAATTCACTTTGTTATTACGCCCTAAAAACACATTCCCCTCATTAGGATAAAAG
193 AGTATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAG
* * * ** * *
548494 ATATTGAGGATTTTGTTTTCATTGAAATGATTTCCTTGCCCTACTTTCCATAAAATCAAAGTTCA
258 ATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * *
548559 TGCCTTAAATAAAACAAGCATCGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAA
323 TCCCTTAAA-AAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAA
* * * * *
548624 AAACACTTTCCGTTCATTAAGATATAGGACATTGATGC-ATTGGTGTCACAA-AAAAGCTTTTAT
387 AAACACTTTCCCTTCATTAGGATACACGACATTGATGCTA-TGGTGTCACAAGAAAAGCTTTTCT
* *
548687 TTCCACCGTTTTTTATAGAATCA
451 TTCCACAGTTTTTGATAGAATCA
* * * * *
548710 AAGTTTACCTCTTAACA-AAGACAAACGTGAATGGTCATACTAAACCCGATTCGTTTC-GAGATT
1 AAGTTTGCCTCTTAA-ATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAG-GATT
* * * * * *
548773 AGGCACCATCATAAACACAGTCTTCTCATAAGGATGTATGATATTGATGCTTCAGATTCTCTACA
64 AGGCA-C--CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGA
*
548838 AAGGCTTTCTTTTGACCAATTATTATAAAGTCTAAGTTCT-TACCTCAAATGAGCCAAACATGGA
126 AAGGCTTTCTTCT-ACCAATTATTATAAAGTCTAAGTT-TGTACCTCAAATGAGCCAAACATGGA
* * * *
548902 TTCTAGTATTGATCGTCATTCATTTCGCT-ATTTGGCACTAAAAACACATTCTCCTCATTAGGAT
189 TTCTAGTATTGATCTTCATTCATTTTG-TGATTAGGCACTAAAAACACATTATCCTCATTAGGAT
* * * *
548966 AAAAGATGTTGATGATTTTCTTTACATGGAAATGTTTTCCTTGCCCTATTTTCCTTAAAATTAAA
253 AAAAGATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAA
* * *
549031 GTTCATCTCTTGAAAAAGACAGCCATTGATTCTTGTAACAATCTCCATTCTTTTCAAGATTGGGA
318 GTTCATCCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGA
* * ** * * * *
549096 ACCAAAAACACTTTCCCATCTTTAGGATACTTGACATTTATACTAAGGTGTCGCAAGAAAAGCTT
382 ACCAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTT
** *
549161 TTCTTTCCACCTTTTTTGATAGAGTCA
447 TTCTTTCCACAGTTTTTGATAGAATCA
* * ** * * *
549188 AAGTTTACCACTTAAATTCGACAAACATGAATAGTCATGCTAATCCCCATTCTTCTCCA-GATTA
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTT-TTCAGGATTA
* * *
549252 GGCACCATCATAAACATAGTCTTCTCGTAAAGATGTATGATATTGATGCTTCGGTTTCTCAAGAA
65 GGCA-C--CATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAA
* * * * * * *
549317 AAGCTTTTTTCTGACCAATTATAATTATGTCTAAGTTCGTGCCTCAAATGAGCCAAACATGGATT
127 AGGCTTTCTTCT-ACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATT
* * *
549382 CTAGTATTGATCATCATTCATTTTGTTG-TTAGGCACTAAAAACACATTCTCCTCATTAGAATAA
191 CTAGTATTGATCTTCATTCATTTTG-TGATTAGGCACTAAAAACACATTATCCTCATTAGGATAA
* * *
549446 AAGATATTGATGATTTTCTTTACATGGAAATGTTTTCCATGCCCTATTTTCCTTAAAATCAAAGT
255 AAGATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * *
549511 TCATTCCTTGAATAAGGCAACCATTGATTCTCGTAACAATCTCCATTCTTTTCGACATTGGGAAC
320 TCATCCCTT-AAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAAC
* * * ** * ***
549576 CAAAAACACTTTTCCATCTTTAGGATACTTGACATTGATGCTCTGGTGTCGTTAGAAAAGCTTTT
384 CAAAAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTTT
* *
549641 CTTTACACCG-TTTTGATAGAATCA
449 CTTTCCACAGTTTTTGATAGAATCA
* * * *
549665 AAGTTTGCCTCTTAAATATGACAAACATGAATGGTCATAGTAATCCCCATTCTTTTTAGGAATAG
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * * **
549730 GCACCATAAATGA-AGCCTTCTCAAAAGGATGCATGATAATGACGCTTTGATTTCTCAAGATGGG
66 GCACCATAAA-CATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGG
* * * * * ** *
549794 CTTTCTTCCGACCAACTGTTATGAAGGTCTAAGTTTGTGCCTCAAATGAGCCAAACAACGATTCC
130 CTTTCTT-CTACCAATTATTAT-AAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCT
* * * * *
549859 GGTATTGTTCTTCATTCCTTTTGTGATTAGGCAAC-ATAAACACATTATCCTCATTAGGATAAAT
193 AGTATTGATCTTCATTCATTTTGTGATTAGGC-ACTAAAAACACATTATCCTCATTAGGATAAAA
* ** * * * *
549923 GATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTGCACTTATCTTCGTTTAAATCAAAGTT
257 GATATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGC-CCTATTTTCCTTAAAATCAAAGTT
* * * * * * **
549988 CATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATTTCCATTCTTCTCAAGATTAGGTCCC
321 CATCCCTTAAA-AAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACC
* * * * * *
550053 AAAAACA-TATTGCCTTCATTATGATACACAACATTGATGCTTTGGTGTCGCAAGAAAAGATTTT
385 AAAAACACT-TTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTTT
550117 CTTTCCAC-GTTTTTGATAGAATCA
449 CTTTCCACAGTTTTTGATAGAATCA
* * * * *
550141 AAG-TTGGCTCTTAAATAAGAAAAACTTGAATGGCCATACTAATCCCCATTCTTTTCGGGATTAG
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * * *
550205 GCGCCATAAACATAGTTTTCTAATAAGGAAGCATGATATTAATGCTTCAGTTTCTCAAGAATGGC
66 GCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGGC
* * * * ** * * * *
550270 TTGCTTCAGACCTATTATTATAAAGTCTAAGTTCGGGCCTCAAAAGAGACAAACAAGGATTCCAG
131 TTTCTTC-TACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCTAG
* * * * *
550335 TATTGATCTTTATTCATTTTGTGATTAGGCACTATAAACATACTATCCTCATTAGGATAAATGAT
195 TATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAGAT
* * *
550400 ATTGATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAAGTTTAT
260 ATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATC-AAAGTTCAT
* * * * *
550465 CCTTTAAAAAAGA-AA--A--GCATTCTCGTAACGATCTCCATTCCTATCAAGATTGGGACCCAA
324 CCCTT-AAAAAGACAACCATTG-ATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAA
* * ** * * * * *
550525 AAACACATTCACTTCATTAGGATACACGATGTTGATGCTTTGGTGCCGCAAGACAGGCTTTTCTT
387 AAACACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTTTCTT
550590 TCCACCA-TTTTTGATAGAATCA
452 TCCA-CAGTTTTTGATAGAATCA
* * ** * *
550612 AAGTTTGTCTCTTAAATAGGACAAACATGAATGGTCATACTAATCTGCATTCTTTCCAGGACTAG
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * *
550677 GCACCGTAAACGTTGTCTTCTCATAAGGATCCATGATATTGATGCTTTGGTATCTCAAGAAAGGC
66 GCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGGC
* * * * * * * *
550742 TTTCTTCGGACTAATTATTATAAAGTTTATGTTCGTGCCTCAAATGAGCTAAACATGGATTCCAG
131 TTTCTTC-TACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCTAG
* * * *
550807 TATT-ATTCTTCATTCATTTTGAGATTAGGCACTATAAACATATTATCCTCATTAGGATAAATGA
195 TATTGA-TCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAGA
* * * * *
550871 TATTAATGATTTTCCTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATCAAAGTTTA
259 TATTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCC-TATTTTCCTTAAAATCAAAGTTCA
* ** * * * *
550936 TCCTTTAAATAAGACAACCACCGATTCTCGAAACAATCTCCATTCTGTTCAACATTGGG-ACAAA
323 TCCCTTAAA-AAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAAC-CA
* * * *
551000 AAAACACGTTT-CCATCATTAGGACACACGACATTGACGCCT-TGGTGTCGCAAGAAAAGCTTTT
386 AAAACAC-TTTCCCTTCATTAGGATACACGACATTGATG-CTATGGTGTCACAAGAAAAGCTTTT
* * *
551063 ATCTCTACCA-TTTTTGATAGAATCA
449 CTTTCCA-CAGTTTTTGATAGAATCA
* * *
551088 AAGTTTGCCTCTTAAATAAGACAAACTTGAATGGTCATACTAATCCCTATTCTTTTCGGGATTAG
1 AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
* * **
551153 GCACCATAAACATAGTCCTCTCATATGGATAAATGATATTG
66 GCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTG
551194 TTGATTTTCT
Statistics
Matches: 5302, Mismatches: 842, Indels: 288
0.82 0.13 0.04
Matches are distributed among these distances:
469 1 0.00
470 92 0.02
471 24 0.00
472 279 0.05
473 128 0.02
474 736 0.14
475 1459 0.28
476 993 0.19
477 650 0.12
478 934 0.18
479 5 0.00
480 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (473 bp):
AAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAG
GCACCATAAACATAGTCTTCTCATAAGGATGCATGATATTGATGCTTCGGTTTCTCAAGAAAGGC
TTTCTTCTACCAATTATTATAAAGTCTAAGTTTGTACCTCAAATGAGCCAAACATGGATTCTAGT
ATTGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATAAAAGATA
TTGATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
CTTAAAAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
ACTTTCCCTTCATTAGGATACACGACATTGATGCTATGGTGTCACAAGAAAAGCTTTTCTTTCCA
CAGTTTTTGATAGAATCA
Found at i:551227 original size:318 final size:318
Alignment explanation
Indices: 550817--551500 Score: 966
Period size: 318 Copynumber: 2.2 Consensus size: 318
550807 TATTATTCTT
*
550817 CATTCATTTT-GAGATTAGGCACTATAAACATA-TTATCCTCATTAGGATAAATGATATTAATGA
1 CATTC-TTTTCGAGATTAGGCACTATAAACATAGTCAT-CTCATTAGGATAAATGATATTAATGA
* *
550880 TTTTCCTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATC-AAAGTTTATCCTTTAA
64 TTTTCCTTTCATGGAAATATTTTCTTTGCCC-TATTTCCCTTAAAATCAAAAGTTAATCCTTTAA
* * *
550944 ATAAGACAACCACCGATTCTCGA-AACAATCTCCATTCTGTTCAACATTGGGACAAAAAAACACG
128 AAAAGACAACCACCGATTCTC-ATAACAATCTCCATTATGTTCAACATTGGGACAAAAAAACACA
* *
551008 TTTCCATCATTAGGACACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATCTCTACCA
192 TTCCCATCATTAGGACACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATCTCCACCA
* *
551073 TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACT-TGAATGGTCATACTAATCCC
257 TTTTTAAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAA-TATGAATGGTCATACTAATCCC
* * * * **
551135 TATTCTTTTCGGGATTAGGCACCATAAACATAGTCCTCTCA-TATGGATAAATGATATTGTTGAT
1 CATTCTTTTCGAGATTAGGCACTATAAACATAGTCATCTCATTA-GGATAAATGATATTAATGAT
* *
551199 TTTCTTTTCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCCTTTAAAA
65 TTTCCTTTCATGGAAATATTTTCTTTGCCCTATTTCCCTTAAAATCAAAAGTTAATCCTTTAAAA
* * * **
551264 AAGACAAGCACCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGACCCAAAAACACATTC
130 AAGACAACCACCGATTCTCATAACAATCTCCATTATGTTCAACATTGGGACAAAAAAACACATTC
* * * ** * *
551329 CCTTCATTAGGATACACGACATTGCCGTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
195 CCATCATTAGGACACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATCTCCACCATTT
*
551394 TTAAGAGAATCAAAGTTTTCCTCTTAAATAAGACAAATATGAATGGTCATACTAATCCC
260 TTAAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAATATGAATGGTCATACTAATCCC
* * *
551453 CATTCTTTTCGAGATTAGGCACTATAAACGTAGTCTTCTCATGAGGAT
1 CATTCTTTTCGAGATTAGGCACTATAAACATAGTCATCTCATTAGGAT
551501 GCATGATAAT
Statistics
Matches: 322, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
317 23 0.07
318 296 0.92
319 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (318 bp):
CATTCTTTTCGAGATTAGGCACTATAAACATAGTCATCTCATTAGGATAAATGATATTAATGATT
TTCCTTTCATGGAAATATTTTCTTTGCCCTATTTCCCTTAAAATCAAAAGTTAATCCTTTAAAAA
AGACAACCACCGATTCTCATAACAATCTCCATTATGTTCAACATTGGGACAAAAAAACACATTCC
CATCATTAGGACACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATCTCCACCATTTT
TAAGAGAATCAAAGTTTGCCTCTTAAATAAGACAAATATGAATGGTCATACTAATCCC
Found at i:551849 original size:794 final size:790
Alignment explanation
Indices: 550357--551970 Score: 2168
Period size: 794 Copynumber: 2.0 Consensus size: 790
550347 TTCATTTTGT
* *
550357 GATTAGGCACTATAAACATACT-ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
1 GATTAGGCACCATAAACATAGTCAT-CTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* * * *
550421 GAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAAGTTTATCCTTTAAAAAAGAAAAGCATT
65 GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCCTTTAAAAAAGAAAACCATT
* * *
550486 CTCGTAACGATCTCCATTCCTATCAAGATTGGGACCCAAAAACACATTCACTTCATTAGGATACA
130 CTCATAACAATCTCCATTACTATCAAGATTGGGACCCAAAAACACATTCACTTCATTAGGATACA
** * * * * *
550551 CGATGTTGATGCTTTGGTGCCGCAAGACAGGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
195 CGACATTGACGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCAAAGT
* **
550616 TTGTCTCTTAAATAGGACAAACATGAATGGTCATACTAATCTGCATTCTTTCCAGGACTAGGCAC
260 TTGTCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTCCAGGACTAGGCAC
* * * * *
550681 CGTAAACGTTGTCTTCTCATAAGGATCCATGATATTGATGCTTTGGTATCTCAAGAAAGGCTTTC
325 CATAAACGTAGTCTTCTCATAAGGATCCATGATAATGACGCTTGGGTATCTCAAGAAAGGCTTTC
* * * *
550746 TTCGGACTAATTATTATAAAGTTTATGTTCGTGCCTCAAATGAGCTAAACATGGATTCCAGTATT
390 TTCCGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCCAGTATT
* * *
550811 ATTCTTCATTCATTTTGAGATTAGGCACTATAAACATATTATCCTCATTAGGATAAATGATATTA
455 ATTCTTCATTCATTTTGAGATTAGGCACTATAAACACATCATCCTCATTAGGATAAAAGATATTA
* * * *
550876 ATGATTTTCCTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATCAAAGTTTATCCTT
520 ATGATTTTCATTTCATGCAAATCTTTTCTTTGCCCTTATTTCCCATAAAATCAAAGTTAATCCTT
* * * *
550941 TAAATAAGACAACCACCGATTCTCGAAACAATCTCCATTCTGTTCAACATTGGGACAAAAAAACA
585 TAAAAAAGAAAAACACCGATTCTCGAAACAATCTCCACTCTGTTCAACATTGGGACAAAAAAACA
* * * * * * * * *
551006 CGTTTCCATCATTAGGACACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTATCTCTAC
650 CATTCCCATCATCAGGACACAAGACACTGACACCTTGGTGCCACAAGAAAAGCTTTTATCTCCAC
* * *
551071 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACT-TGAATGGTCATACTAATCCC
715 CATTTTTAATAGAATCAAAGTTTGCCTCTAAAATAAAACAAA-TATGAATGGTCATACTAATCCC
551135 TATTCTTTTCGG
779 TATTCTTTTCGG
* *
551147 GATTAGGCACCATAAACATAGTCCTCTCA-TATGGATAAATGATATTGTTGATTTTCTTTTCATG
1 GATTAGGCACCATAAACATAGTCATCTCATTA-GGATAAATGATATTGATGATTTTCTTTTCATG
551211 GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCCTTTAAAAAAGACAAGCACC
65 GAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCCTTTAAAAAAGA-AA--ACC
* * *
551276 GATTCTCATAACAATCTCCATTATTTTCAAGATTGGGACCCAAAAACACATTCCCTTCATTAGGA
127 -ATTCTCATAACAATCTCCATTACTATCAAGATTGGGACCCAAAAACACATTCACTTCATTAGGA
* * *
551341 TACACGACATTGCCGTTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCA
191 TACACGACATTGACGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCA
* * *
551406 AAGTTT-TCCTCTTAAATAAGACAAATATGAATGGTCATACTAATCCCCATTCTTTTC-GAGATT
256 AAGTTTGT-CTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTCCAG-GACT
* * * * *
551469 AGGCACTATAAACGTAGTCTTCTCATGAGGATGCATGATAATGACGCTTGGGTTTCTCGAGAAAG
319 AGGCACCATAAACGTAGTCTTCTCATAAGGATCCATGATAATGACGCTTGGGTATCTCAAGAAAG
* *
551534 GCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACGTGGATTCT
384 GCTTTCTTCCGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCC
* * *
551599 AGTATTGTTCTTCATTCACTTTT-TGATTGGGCACTATAAACACATCATCCTCCA-TAGGATAAA
449 AGTATTATTCTTCATTCA-TTTTGAGATTAGGCACTATAAACACATCATCCT-CATTAGGATAAA
* * *
551662 AGATATTTATGATTTTCATTTCATGCAAATCTTTTCTTTGCCC-TATTTTCGATAAAATCAAAAG
512 AGATATTAATGATTTTCATTTCATGCAAATCTTTTCTTTGCCCTTATTTCCCATAAAATC-AAAG
* * * *
551726 TTAATCCTTTAAAAAAGAAAAACATCGGTTCTCGTAACAATCTCCACTCT-TTCCAAGATTGGGA
576 TTAATCCTTTAAAAAAGAAAAACACCGATTCTCGAAACAATCTCCACTCTGTT-CAACATTGGGA
** * * * * *
551790 CCTAAAATCACATTCCCTTCATCAGGATACAAGACACTGCCACGTTGGTGCCACAAGAAAAGCTT
640 CAAAAAAACACATTCCCATCATCAGGACACAAGACACTGACACCTTGGTGCCACAAGAAAAGCTT
* * ** * *
551855 TTCTTTCCACTGTTTTTAATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCAT
705 TTATCTCCACCATTTTTAATAGAATCAAAGTTTGCCTCTAAAATAAAACAAATATGAATGGTCAT
*
551920 ACTAATCCTTATTCTTTTCGG
770 ACTAATCCCTATTCTTTTCGG
* * *
551941 GATT-GAGCACCATAGACGTAGTCTTCTCAT
1 GATTAG-GCACCATAAACATAGTCATCTCAT
551971 GAAGTTGCAT
Statistics
Matches: 713, Mismatches: 96, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
789 2 0.00
790 109 0.15
791 3 0.00
793 21 0.03
794 572 0.80
795 6 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (790 bp):
GATTAGGCACCATAAACATAGTCATCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
AAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTAATCCTTTAAAAAAGAAAACCATTC
TCATAACAATCTCCATTACTATCAAGATTGGGACCCAAAAACACATTCACTTCATTAGGATACAC
GACATTGACGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCAAAGTT
TGTCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTCCAGGACTAGGCACC
ATAAACGTAGTCTTCTCATAAGGATCCATGATAATGACGCTTGGGTATCTCAAGAAAGGCTTTCT
TCCGACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAGCCAAACATGGATTCCAGTATTA
TTCTTCATTCATTTTGAGATTAGGCACTATAAACACATCATCCTCATTAGGATAAAAGATATTAA
TGATTTTCATTTCATGCAAATCTTTTCTTTGCCCTTATTTCCCATAAAATCAAAGTTAATCCTTT
AAAAAAGAAAAACACCGATTCTCGAAACAATCTCCACTCTGTTCAACATTGGGACAAAAAAACAC
ATTCCCATCATCAGGACACAAGACACTGACACCTTGGTGCCACAAGAAAAGCTTTTATCTCCACC
ATTTTTAATAGAATCAAAGTTTGCCTCTAAAATAAAACAAATATGAATGGTCATACTAATCCCTA
TTCTTTTCGG
Found at i:554029 original size:477 final size:478
Alignment explanation
Indices: 551179--562444 Score: 14065
Period size: 477 Copynumber: 23.6 Consensus size: 478
551169 CCTCTCATAT
* * *
551179 GGATAAATGATATTGTTGATTTTCTTTTCATGGAAAT-ATTTTCTTTGCCCT-ATTTTCCTTAAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * * *
551242 ATCAAAAGTTAATCCTTTA-AAAAAGACAAGCACCGATTCTCATAACAATCTCCATTATTTTCAA
66 ATC-AAAGTTCATCC-CTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * *
551306 GATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGCCGTTTTGGTGTCGCAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* * * * * * * *
551371 AAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCAAAGTTTTCCTCTTAAATAAGACAAATATGA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * * * *
551436 ATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACTATAAACGTAGTCTTCTCATGAGGAT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * *
551501 GCATGATAATGACGCTTGGGTTTCTCGAGAAAGGCTTTCTTCCGACCAATTATTAT-AAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* ** * * *
551565 TGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGTTCTTCATTCACTTTT-TGATTGG
389 TGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTC-GTTTTGTAATTAG
* * *
551629 GCACTATAAACACATCATCCTCCA-TA
453 GCATTGTAAACACATTATCCT-CATTA
* * * * * **
551655 GGATAAAAGATATTTATGATTTTCATTTCATGCAAATC-TTTTCTTTGCCCT-ATTTTCGATAAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * * * * *
551718 ATCAAAAGTTAATCCTTTA-AAAAAGAAAAACATCGGTTCTCGTAACAATCTCCACTCTTTCCAA
66 ATC-AAAGTTCATCC-CTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * * * * * * *
551782 GATTGGGACCTAAAATCACATTCCCTTCATCAGGATACAAGACACTGCCACGTTGGTGCCACAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* *
551847 AAAAGCTTTTCTTTCCACTGTTTTTAATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
** * *
551912 ATGGTCATACTAATCCTTATTCTTTTCGGGATTGAGCACCATAGACGTAGTCTTCTCATGAA-GT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCAT-AAGGT
* * * * *
551976 TGCATGATAATGATGCTTTGCTTTATCAGGAAAGACTTTCTTCTGACCAATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * *
552041 ATGTTCATGCCACAAATGAGCCAAACAAGGATTCTAGTACT-TTCTAT-ATTTGTTTCGTAATTA
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-TCATTCGTTTTGTAATTA
*
552104 GGCACTGTAAACACATTATCCTCATTA
452 GGCATTGTAAACACATTATCCTCATTA
*
552131 GGATAAACGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTTGCCCTAATTTTCCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC--TTTTTTTTTGCCCTAATTTTCCTTA
* * * * *
552196 AAATGAAAGTTCATCCCTTCAACAAGACAAGCATCGATTCTCGCAACAATCTCCATTTTTTTCAA
64 AAATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * * * * * **
552261 GATTGGCACCCAAAAATACGTTCCCTTCATTAGGATACATGACGTTGATGCTTTTGCATCGCAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* * * * * ** * * *
552326 AGAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTACCTCTTATGTAAGACAAACATGA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * * * * * * *
552391 ACGGTCATACTAATTCCCATTATTTCCCGGATTAGGCACCATCATAAACATAGTCTTCTCATTAG
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCA-C--CATAAACGTAGTCTTCTCATAAG
* * * * * * *
552456 GATGTATGATATTGATGCTTCGGTTTCTCAAGAAAAGCTTTCTTCTGACCAATTATTA-CAAAGT
321 GTTGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGT
* * * * * * * * *
552520 CTAAG-TCTGTGCCTCAAATGAGCCAAACATGGATTCTAGTGTAGATCATCATTCATTTTGTTAT
386 CTATGTTC-GTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAAT
* ** * *
552584 TAGGCACTAAAAACACATTCTCCTCGTTA
450 TAGGCATTGTAAACACATTATCCTCATTA
* * * *** *
552613 GGATAAAAGATATTGATGATTTTCTTTACATGGAAAT-GTTTTCCATGACCT-A-TTTCTCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTC-CTTAA
*
552675 AATCAAAGTTCATCCCT-CAAATAAGACAA-CTATCGATTCT-GTTAACAATCTCCTTTCTTTTC
65 AATCAAAGTTCATCCCTAC-AATAAGACAAGC-ATCGATTCTCG-TAACAATCTCCATTCTTTTC
* * * * * ** * * *
552737 AAGATTGGGAACCAAAAACACTTTCCCATCTTTAGGATACTTGACATTGATGCTCTGGTGTCGCT
127 AAGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCA
* * * * * * * *
552802 AGAAAAGATTTTCTTTTCACCGTTTTTTATAAAATCAAAGTTTGCCTCTTAAAA-GAGACAAACA
192 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTC-TAAAATAAAACAAATA
* * * * * *
552866 TGAATGGTTATA-TAAATCCCCATTCTTTTCGGGAATAGGCATCATAAACGAAGTCTTCTCATAA
256 TTAATGGTCATACT-AATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAA
* * * *
552930 GGATGTATGATAATGATGCTTTGGTTTCTCAA-AAAGGGCTTTCTTCTGACCGATTATTATAAAA
320 GGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAAAA
* * * * * * *
552994 GTCTATGTTCGTACCTCAAATGAGACAAACAACGATTCTAGCATTGTTCTTCATTCGTTTAGTGA
384 GTCTATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAA
* * *
553059 TTCGGCACTGTAAACACATTATCCTCTTTA
449 TTAGGCATTGTAAACACATTATCCTCATTA
* * * * * *
553089 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC--TTTTTTTGCACTTATTTTACTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * * *
553152 ATCAAAGTTCATCCCCTA-AATAAGAAAAGCATTGACTCTCATAGCAATCTTCATTCTTTTCAAG
66 ATCAAAGTTCAT-CCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * *
553216 ATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACAACATTGACGCTTTGGTGTCGTAAG
130 ATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* * *
553280 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTTTTAAATAAAACAAATGTTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
*
553345 ATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * *
553410 GCATGACAATGATGCTTTGGTTTCAT-AAGAAAGACTTTTTTCCGACCAATTGTTATAAAAGTCT
324 GCATGATAATGATGCTTTGGTTTC-TCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * *
553474 ATTTTCGTGCCACAGATGAGCAAAACAAGGATTCTAGTACTGTTCTAT-ATTTGTTTTGTAATTA
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-TCATTCGTTTTGTAATTA
*
553538 GGCATTGCAAACACATTATCCTCATTA
452 GGCATTGTAAACACATTATCCTCATTA
*
553565 GGATAAATGATATTGATGATTTTTTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * *
553630 ATGAAAGTTCATCCCTACAATAAGATAAGCATCAATTCTCGTAACAATCCCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
* * * * *
553695 TTGAGACCCAAAAACACATTCTCTTTATTAGGATACACGACA-TGACGCGTTAGAGTCGCAAGAA
131 TTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAA
*
553759 AAGCTTTTCTTTCTACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
196 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
** * * * *
553824 GGTCATACTAATCCTTATGCTTTTCGGGATTGGGCACCATAGACATAGTCATCTCATAAGGTTGC
261 GGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGC
* * * *
553889 ATGATAATTATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATG
326 ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
* * * *
553954 TTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCAATCGTTTTGTGATTAGGCA
391 TTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGGCA
* * *
554019 CTATAAACACATTATCCTCTTTA
456 TTGTAAACACATTATCCTCATTA
* * * * *
554042 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * *
554106 ATCAAAGTTCATCCCTAAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
* * **
554171 TTGGGTCCCAAAAACACATTGC-CTTCATTATGATACATAACATTGACGCTTTGGTGTCGCAAGA
131 TTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGA
* * * *
554235 AAAGCTTTTCTTTCCACCATTTTTGAGAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
* *
554300 TGGTCATACTAATCCCCATTTTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTG
260 TGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTG
* * * * *
554365 CATGACAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTGTTATAAAAGTCTAT
325 CATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTAT
* * * * *
554430 TTTCGTGCCACATATGAGCAAAACAAGGATTCTAGTACTGTTCTAT-ATTTGTTTTGTAATTAGG
390 GTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-TCATTCGTTTTGTAATTAGG
554494 CATTGTAAACACATTATCCTCATTA
454 CATTGTAAACACATTATCCTCATTA
*
554519 GGATAAA-GATATTGATGATTTTCTTTTCATGCAAATCTTTTTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC-TTTTTTTTTGCCCTAATTTTCCTTAA
* * * * * *
554583 AATGAAAGTTCATCCCTTCAACAAGACAAGCATCGATTCTCGCAAAAATCTCCATTTTTTTCAAG
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * * * * * **
554648 ATTGGCACCCAAAAATACGTCCCCTTCTTTAGGATACACGACGTTGATGCTTTGGCATCGCAAGA
130 ATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGA
* * * * * * * * ** * *
554713 CAAGCTTTTTTTTCCATCTTTTTTGATAGAATCAAAGTTTACCTCTTAAGTAAGGCAAACATGAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
* * * * * * *
554778 TGGTCATACTAATTCCCAATATTTCTC-GGATTAGGCACCATCATAAACATACTCTTCTCATTAG
260 TGGTCATACTAATCCCCATTCTTT-TCGGGATTGGGCA-C--CATAAACGTAGTCTTCTCATAAG
* * * * * * *
554842 GATGTATGATATTGATGCTTCGGTTTCTCAAGAAAAGCTTTCTTCTGACCAATTATTA-CAAAGT
321 GTTGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGT
* * * * * * * * * *
554906 CTAAG-TCTGTGCCTCAAATGAGCCAAACATGGATTCTTGTGTTGATCATCATTCATTTTCTTAT
386 CTATGTTC-GTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAAT
* ** * *
554970 TAGGCACTAAAAACACATTCTCCTCGTTA
450 TAGGCATTGTAAACACATTATCCTCATTA
* * * *** *
554999 GGATAAAAGATATTGATGATTTTCTTTACATGGAAAT-GTTTTCCATGACCT-A-TTTCTCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTC-CTTAA
*
555061 AATCAAAGTTCATCCCT-CAAATAAGACAA-CTATCGATTCT-GTTAACAATCTCCTTTCTTTTC
65 AATCAAAGTTCATCCCTAC-AATAAGACAAGC-ATCGATTCTCG-TAACAATCTCCATTCTTTTC
* * * * * * ** * * *
555123 AAGATTGGGAACCAAAAACACTTTCCCATCTTTAAGATACTTGACATTGATGCTCTGGTGTCGCT
127 AAGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCA
* * * * * * * * * *
555188 AGAAAAGATTTTCCTTCCACAGTTTTTTATAAAATCAAAGTTTGCCCCTTAAAA-GAGACAAACA
192 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTC-TAAAATAAAACAAATA
* * * * * *
555252 TGAATGGTTATA-TAAATCCCCATTCTTTTCGGGAATAGGCATCATAAACGAAGTCTTCTCATAA
256 TTAATGGTCATACT-AATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAA
* * * *
555316 GGATGTATGATAATGATGCTTTGGTTTCTCAA-AAAGGGCTTTCTTCTGACCGATTATTATAAAA
320 GGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAAAA
* * * *
555380 GTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTAGTGA
384 GTCTATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAA
* *
555445 TTCGGCATTGTAAACACATTATCCTCTTTA
449 TTAGGCATTGTAAACACATTATCCTCATTA
* * * ** * *
555475 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTTTGCACTTGTTTTACTTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC-TTTTTTTTTGCCCTAATTTTCCTTAA
* * * *
555540 AATCAAAGTTCATCCCCTA-AATAAGAAAAACATTGATTCTCATAACAATCTCCATTCTTTTCAA
65 AATCAAAGTTCAT-CCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * *
555604 GATTGGGTCCCAAAAACGCATTGTCTTCATTATGATACACAACATTGACGCTTTGGTGTCGCAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
** * *
555669 AAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
555734 ATGGTCATACTAATCCCCATTCTTCTT-GGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
259 ATGGTCATACTAATCCCCATTCTT-TTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * * *
555798 TGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCAGTCCAATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * * *
555863 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTATTGTACATTCGTTTTGTAATTAG
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAG
555928 GCATTGTAAACACATTATCCTCATTA
453 GCATTGTAAACACATTATCCTCATTA
* ** * **
555954 CGATAAATGATATTGATGATTTTCTTTTTGTGGAAATCTTATTTTTTTCCCCTAATTACCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
* * *
556019 AATGAAAGTTCATCCCTACAGTAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * *
556084 ATTGAGACCCAAAAAGACATTCTCTTGATTAGGATACACGACATTGACGCGTTGGAGTCGCAAGA
130 ATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGA
* * *
556149 AAAGCTTTTCTTTCCACC-ATTTTGATGGAATCGATGTTTGCCTCTAAAATAAAACAAATATTAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
* * * * * * *
556213 TGGTCATACTAATTCCTATCCTTTTCGGGGTTGCGCACCATAAACATAGTCTTCTCTTAAGGTTG
260 TGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTG
* * * * *
556278 CATGATAACGATGCTTTGGTTTCCCAAGAAGGGCTTTCTTCTGACCAATTCTTATAAAAGTCTAT
325 CATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTAT
* * * *
556343 GTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTATGC
390 GTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGGC
* * * *
556408 ACTATAAACACATTATCGTCTTTA
455 ATTGTAAACACATTATCCTCATTA
* * * * * * * *
556432 GGATAAATGATTTTAATGATTGTCTTTCCATTGAAATC-TTTTTTTTGCACTTATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* *
556496 ATCAAAGTTCATCCCATA-AATAAGA-AAGGCATTGACTCTCGTAACAATCTCCATTCTTTTCAA
66 ATCAAAGTTCATCCC-TACAATAAGACAA-GCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * *
556559 GATTGGGCCCCAAAAACACATTGC-CTTTATTATGATACACAACATTGACGCTTTGGTGCCGCAA
129 GATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAA
* * * * *
556623 GAAAAGCTTTTCATTCTACCGTTTTTAATAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTT
193 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATT
*
556688 AATGGTCGTACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
258 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * *
556753 TGCATGATAATGATGCTTTGGTTTCTTAACAAAGACTTTTTTCCGACCAATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * ** *
556818 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACAGTTCTACATTCGTTTTGTAATTAG
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAG
*
556883 GCATTATAAACACATTATCCTCATTA
453 GCATTGTAAACACATTATCCTCATTA
556909 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
*
556974 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CCTATTCTTTTCAA
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC-ATTCTTTTCAA
* * * * * *
557038 GATTGAGACCCAAAAACACATTGTCTTCATTAAGATACACGACA-TGACGCGTTAGAGTCGCAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
*
557102 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* ** * * *
557167 ACGGTCATACTAATCCTTATGCTTTTCGGGATTGGGCACCATAGACGTAGTCTTCTTATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * **
557232 GCATGATAATTATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACTGATTATTATAAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * *
557297 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTTGTGATTAGG
389 TGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGG
* * *
557362 CACTATAAACACATTATCCTCTTTA
454 CATTGTAAACACATTATCCTCATTA
* * * * *
557387 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * * *
557451 ATCATAGTTCATCCCTTA-AATAGGAAAAGCATTC-ACTCTCGTAACAGTCTCCACTCTTTTCAA
66 ATCAAAGTTCATCCC-TACAATAAGACAAGCA-TCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * *
557514 GATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACAACATTGACGCTTTGGTGTCGCAA
129 GATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAA
* * * * *
557578 GAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAATGCTTGCCTCTTAAATAAAACAAATGTT
193 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATT
* * * * *
557643 AATGGTCATTCTAATCCCTATTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCACAAGTT
258 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * * *
557708 TGCATGACAATGATGCTTTGTTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * *
557773 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTTTAATTAG
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAG
* *
557838 GCATTTTACACACATTATCCTCATTA
453 GCATTGTAAACACATTATCCTCATTA
557864 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
* *
557929 AATGAAAGTTCATCCCTACAATAAGACAAG-ATTCGATTCTCGTAACAATC-CCCTCTCTTTTCA
65 AATCAAAGTTCATCCCTACAATAAGACAAGCA-TCGATTCTCGTAACAATCTCCAT-TCTTTTCA
* * *
557992 AGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCGTTGGAGTCGCAA
128 AGATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAA
* * *
558057 GAAAAGTTTTTCTTTCTACTGTTTTTGATAGAATCAAT-TTTCGCCTCTAAAATAAAACAAATAT
193 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTT-GCCTCTAAAATAAAACAAATAT
* * * *
558121 TAATGGTCATACTAATCCCTACTCTTTTTGGGATTGGGCACCATAGACGTAGTCTTCTCATAAGG
257 TAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGG
* * * ** *
558186 TTGCATGATAACGATGCTTTGGTTTCTCAA-AAAGGGTTTTCTTCTGACTGATTATTATCAAAGT
322 TTGCATGATAATGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAAAAGT
* * * * *
558250 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAATATTGTTCTTCAGTCGTTTTGTGATT
386 CTATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATT
* * * *
558315 AGGCACTATAAACACGTTATCCTCTTTA
451 AGGCATTGTAAACACATTATCCTCATTA
* * * * *
558343 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * *
558407 ATCAAAGTTGATCCCTAAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
* * * * *
558472 TTGGGTCCCAAAAACACATTGTCGTCATTATGATACACAACATTGACGCTTTGGTGTCGCAAGAA
131 TTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAA
* *
558537 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTAAT
196 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
* *
558602 GGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGCCTTCTCATAAGGTTGC
261 GGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGC
* * * *
558667 ATGATAATGATGCTTTGGTTTCTTAAGAAAGTCTTTTTTCCGACCAAATATTATAAAAGTCTATG
326 ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
* * * * * *
558732 TTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTCATTAGGCA
391 TTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGGCA
558797 TTGTAAACACATTATCCTCATTA
456 TTGTAAACACATTATCCTCATTA
* *
558820 GGATAAATGATTTTGATGATTTTCATTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
* * * ** *
558885 AATAAAATTTAATCCCTACAATAAGATGAGCATCGATTCTCGTAACAATC-CCCTCTCTTTTCAA
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT-TCTTTTCAA
* * * *
558949 GATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCATTGGAGTCACAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* *
559014 AAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAAAACAAATATTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * ** *
559079 ATGGTCAAACTAATCCCTATTCTTTTTAGGATTGGGCACCATAGACGTAGTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * * *
559144 GCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTATTAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * *
559209 TGTT--TGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTCGTTTTGTGATTAGG
389 TGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGG
* * *
559272 CACTATAAACACATTATCCTCTTTA
454 CATTGTAAACACATTATCCTCATTA
* * * * * *
559297 GGAAAAATGATATTGATGATTTTCTTTCCATTGAAATC-TGTTTTTTGCACTAATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * *
559361 ATCAAAGTTCTTCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTCTTTTCAAG
66 ATCAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * * *
559425 ATTGGGTCCCAAAAACACATTGC-CTTCAATATGATACACAACATTGATGCTTTGGTGTCGCAAG
130 ATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* * * *
559489 AAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAATAAATGTTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* *
559554 ATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTATTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * * *
559619 GCATGATAATGATGCTTTGGTTTTTTAAGAAAGACTTTTTTCCGACCAGTTATTATAAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * *
559684 TGTTCGTGCCA-AATATGAGCAAAACAAGGATTCTAGGACTATTC-TCTATTCGTTTTGTAATTA
389 TGTTCGTGCCACAA-ATGAGCCAAACAAGGATTCTAGTATTGTTCTTC-ATTCGTTTTGTAATTA
*
559747 GGCATTGTAAACACATTATCCTAATTA
452 GGCATTGTAAACACATTATCCTCATTA
* *
559774 GGATAAACGATATTGATGATTTTCTTTTCATGGTAATCTTTTTTTTTTTGCCCT-ATTTTCCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC--TTTTTTTTTGCCCTAATTTTCCTTA
* * * * *
559838 AAATGAAAGTTCATCCCCACAATAAGACAAGCATCGATTCTCGTAACAATCCCCACTATTTTCAA
64 AAATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
* * * * *
559903 GATTGAGACCCAAAAACACATTCTCTTGATTAGGATACACGACATTGACGCGTTGGAGTCGCAGG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
*
559968 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAAGCAATGTTTG-CTCTAAAATAAAACAAATATTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * * *
560032 TTGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTCTCATAAGGT
259 ATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* *
560096 TGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCGACCGATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * * *
560161 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAG
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAG
560226 GCATTGTAAACACATTATCCTCATTA
453 GCATTGTAAACACATTATCCTCATTA
560252 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
560317 AAT-AAGAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CCTATTCTTTTCA
65 AATCAA-AGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC-ATTCTTTTCA
* * * *
560380 AGATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGACGCTTTGGTGTCGCA
128 AGATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCA
*
560444 AGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTTG-CTCTAAAATAAAACAAATAT
192 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATAT
* * * *
560507 TATTGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTCTCATAAG
257 TAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTCTCATAAG
* *
560571 GTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCGACCGATTATTATAAAAGT
321 GTTGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGT
* * * * * * *
560636 CTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATT
386 CTATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATT
560701 AGGCATTGTAAACACATTATCCTCATTA
451 AGGCATTGTAAACACATTATCCTCATTA
560729 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
*
560794 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CCTATTCTTTTCAA
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC-ATTCTTTTCAA
* * * *
560858 GATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGACGCTTTGGTGTCGCAA
129 GATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAA
* * *
560922 GAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTT
193 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATT
560986 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
258 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * *
561051 TGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAAATATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * *
561116 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAAGTAG
388 ATGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAG
561181 GCATTGTAAACACATTATCCTCATTA
453 GCATTGTAAACACATTATCCTCATTA
* *
561207 GGATAAATGATTTTGATGATTTTCATTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAATTTTCCTTAA
* * ** *
561272 AATAAAAGTTAATCCCTACAATAAGATGAGCATCGATTCTCGTAACAATC-CCCTCTCTTTTCAA
65 AATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT-TCTTTTCAA
* * * *
561336 GATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCATTGGAGTCACAAG
129 GATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* *
561401 AAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAAAACAAATATTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * * *
561466 ATGGTCATACTAATCCCTATTCTTTTCAGGATTGGGCACCATAGACGTAGTCTTCCCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * ** * *
561531 GCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTTTGACCGATTATTATTAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * *
561596 TGTT--TGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTCGTTTTGTGATTAGG
389 TGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGG
* * *
561659 CACTATAAACACATTATCCTCTTTA
454 CATTGTAAACACATTATCCTCATTA
* * * * * *
561684 GGAAAAATGATATTGATGATTTTCTTTCCATTGAAATC-TGTTTTTTGCACTAATTTTCCTTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * * *
561748 ATCAAAGTTCTTCCCTTA-AATAAGAAAACCATTGACTCTCGTAACAATCTCCATTCTTTTCAAG
66 ATCAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAG
* * * *
561812 ATTGGGTCCCAAAAACACATTGC-CTTCAATATGATACACAACATTGACGCTTTGGTGTCGCAAG
130 ATTGGGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAG
* * * *
561876 AAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAATAAATGTTA
194 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* *
561941 ATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGCCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * *
562006 GCATGATAATGATGCTTTGGTTTCTTAAGAAAGTCTTTTTTCCGACCAAATATTATAAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * * * *
562071 TGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTCATTAGG
389 TGTTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGG
562136 CATTGTAAACACATTATCCTCATTA
454 CATTGTAAACACATTATCCTCATTA
* * *
562161 GGATAAATGATTTTGATGATTTTCATTTCATGGAAATCTTATTTTTTGCCCTAATTTTCCTTAAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
* * * ** *
562226 ATAAAATTTAATCCCTACAATAAGATGAGCATCGATTCTCGTAACAATC-CCCTCTCTTTTCAAG
66 ATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT-TCTTTTCAAG
* * * *
562290 ATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCATTGGAGTCACAAGA
130 ATTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGA
* *
562355 AAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAAAACAAATATTAA
195 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
* *
562420 TGGTCAAACTAATCCCTATTCTTTT
260 TGGTCATACTAATCCCCATTCTTTT
562445 TAGGATTGAG
Statistics
Matches: 9324, Mismatches: 1317, Indels: 296
0.85 0.12 0.03
Matches are distributed among these distances:
474 6 0.00
475 761 0.08
476 1393 0.15
477 2589 0.28
478 2308 0.25
479 1872 0.20
480 122 0.01
481 134 0.01
482 139 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (478 bp):
GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAATTTTCCTTAAA
ATCAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGA
TTGGGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
GGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGC
ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
TTCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTAATTAGGCA
TTGTAAACACATTATCCTCATTA
Found at i:556675 original size:955 final size:954
Alignment explanation
Indices: 551179--562444 Score: 14141
Period size: 955 Copynumber: 11.8 Consensus size: 954
551169 CCTCTCATAT
*
551179 GGATAAATGATATTGTTGATTTTCTTTTCATGGAAA---TATTTTCTTTGCCCT-ATTTTCCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTT-TTTGCCCTAATTTTCCTTA
* * * * * * * *
551240 AAATCAAAAGTTAATCCTTTA-AAAAAGACAAGCACCGATTCTCATAACAATCTCCATTATTTTC
65 AAAT-GAAAGTTCATCC-CTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTC
* * * * *
551304 AAGATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGCCGTTTTGGTGTCGCA
128 AAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCA
* * * * * *
551369 AGAAAAGCTTTTCTTTCCACCATTTTTAAGAGAATCAAAGTTTTCCTCTTAAATAAGACAAATAT
193 AGAAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATAT
* * * * *
551434 GAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACTATAAACGTAGTCTTCTCATGAGG
257 TAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGG
* * * *
551499 ATGCATGATAATGACGCTTGGGTTTCTCGAGAAAGGCTTTCTTCCGACCAATTATTAT-AAAGTC
322 TTGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTC
** *
551563 TATGTTCGTGCCTCAAATGAGCCAAACGTGGATTCTAGTATTGTTCTTCATTCACTTTT-TGATT
387 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTC-GTTTTGTGATT
* * * *
551627 GGGCACTATAAACACATCATCCTCCA-TAGGATAAAAGATATTTATGATTTTCATTT-CA-TGCA
451 AGGCACTATAAACACATTATCCT-CATTAGGATAAATGATATTGATGATTTTC-TTTCCATTG-A
* * ** * * * *
551689 AATCTTTTCTTTGCCCT-ATTTTCGATAAAATCAAAAGTTAATCCTTTAAAAAAGAAAAACATCG
513 AATCTTTTTTTTGCACTAATTTTCCTTAAAATC-AAAGTTCATCC-CTAAATAAGAAAAGCATCG
* * * * * * *
551753 GTTCTCGTAACAATCTCCACTCTTTCCAAGATTGGGACCTAAAATCACATTCCCTTCATCAGGAT
576 ATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGAT
* * * * * * * *
551818 ACA-AGACACTGCCACGTTGGTGCCACAAGAAAAGCTTTTCTTTCCACTGTTTTTAATAGAATCA
641 ACACA-ACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * *
551882 ATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCTTATTCTTTTCGGGATTGA
705 ATGTTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGG
* * * * *
551947 GCACCATAGACGTAGTCTTCTCATGAA-GTTGCATGATAATGATGCTTTGCTTTATCAGGAAAGA
770 GCACCATAAACGTAGTCTTCTCAT-AAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGA
* * * * *
552011 CTTTCTTCTGACCAATTATTATAAAAGTCTATGTTCATGCCACAAATGAGCCAAACAAGGATTCT
834 CTTTTTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCT
* * * * *
552076 AGTACT-TTCTATATTTGTTTCGTAATTAGGCACTGTAAACACATTATCCTCATTA
899 AGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* *
552131 GGATAAACGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTTGCCCTAATTTTCCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC-TTATTTTTTTGCCCTAATTTTCCTTA
* * * * *
552196 AAATGAAAGTTCATCCCTTCAACAAGACAAGCATCGATTCTCGCAACAATCTCCATTTTTTTCAA
65 AAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAA
* * * * * * *
552261 GATTG-GCACCCAAAAATACGTTCCCTTCATTAGGATACATGACGTTGATGCTTTTGCA-TCGCA
130 GATTGAG-ACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGC-TTTGGAGTCGCA
* * * * ** * *
552324 AGAGAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTACCTCTTATGTAAGACAAACAT
193 AGAAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATAT
* * * * * * * * *
552389 GAACGGTCATACTAATTCCCATTATTTCCCGGATTAGGCACCATCATAAACATAGTCTTCTCATT
257 TAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCA-C--CATAAACGTAGTCTTCTCATA
* * * * * * *
552454 AGGATGTATGATATTGATGCTTCGGTTTCTCAAGAAAAGCTTTCTTCTGACCAATTATTA-CAAA
319 AGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAA
* * * * * * * *
552518 GTCTAAG-TCTGTGCCTCAAATGAGCCAAACATGGATTCTAGTGTAGATCATCATTCATTTTGTT
384 GTCTATGTTC-GTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTG
* * * * * *
552582 ATTAGGCACTAAAAACACATTCTCCTCGTTAGGATAAAAGATATTGATGATTTTCTTTACATGGA
448 ATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGA
* *** *
552647 AATGTTTTCCATG-ACCT-A-TTTCTCTTAAAATCAAAGTTCATCCCTCAAATAAGACAA-CTAT
513 AATCTTTTTTTTGCA-CTAATTTTC-CTTAAAATCAAAGTTCATCCCT-AAATAAGAAAAGC-AT
* * * * * *
552708 CGATTCT-GTTAACAATCTCCTTTCTTTTCAAGATTGGGAACCAAAAACACTTTCCCATCTTTAG
574 CGATTCTCG-TAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAG
*** * * * * * * *
552772 GATACTTGACATTGATGCTCTGGTGTCGCTAGAAAAGATTTTCTTTTCACCGTTTTTTATAAAAT
638 GATACACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * * * *
552837 CAAAGTTTGCCTCTTAAA-AGAGACAAACATGAATGGTTATA-TAAATCCCCATTCTTTTCGGGA
703 CAATGTTTGCCTCTTAAATA-AAACAAATATTAATGGTCATACT-AATCCCTATTCTTTTCGGGA
* * * * * * *
552900 ATAGGCATCATAAACGAAGTCTTCTCATAAGGATGTATGATAATGATGCTTTGGTTTCTCAA-AA
766 TTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAA
* * * * * * * *
552964 AGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTACCTCAAATGAG-ACAAACAACG
831 A-GACTTTTTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCA-AAACAAGG
* * * * * * * *
553028 ATTCTAGCATTGTTCTTCATTCGTTTAGTGATTCGGCACTGTAAACACATTATCCTCTTTA
894 ATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* * * * * *
553089 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC---TTTTTTTGCACTTATTTTACTTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
* * * * * * **
553151 AATCAAAGTTCATCCCCTA-AATAAGAAAAGCATTGACTCTCATAGCAATCTTCATTCTTTTCAA
66 AATGAAAGTTCAT-CCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAA
* * * * * *
553215 GATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACAACATTGACGCTTTGGTGTCGTAA
130 GATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAA
* * *
553279 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTTTTAAATAAAACAAATGTT
194 GAAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATT
*
553344 AATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
258 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * *
553409 TGCATGACAATGATGCTTTGGTTTCAT-AAGAAAGACTTTTTTCCGACCAATTGTTATAAAAGTC
323 TGCATGATAATGATGCTTTGGTTTC-TCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTC
* * * * * * *
553473 TATTTTCGTGCCACAGATGAGCAAAACAAGGATTCTAGTACTGTTCTAT-ATTTGTTTTGTAATT
387 TATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-TCATTCGTTTTGTGATT
* ** * * *
553537 AGGCATTGCAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTTTTTTCATGGAAAT
451 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAAT
* * * *
553602 CTTTTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGATAAGCATCAATT
516 C-TTTTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCCTA-AATAAGAAAAGCATCGATT
* * *
553667 CTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTTATTAGGATAC
579 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGC-CTTCATTAGGATAC
* * * * *
553731 ACGACA-TGACGCGTTAGAGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAATG
643 ACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATG
* * *
553795 TTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCTTATGCTTTTCGGGATTGGGCA
708 TTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCA
* * * * * * *
553860 CCATAGACATAGTCATCTCATAAGGTTGCATGATAATTATGCTTTGGTTTCTCAAGAAGGGCTTT
773 CCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTT
* * * * * * * *
553925 CTTCTGACCGATTATTATAAAAGTCTATGTTCGCGCCTCAAATGAGCCAAACAAGGATTCTAGTA
838 TTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGA
* * * * * * *
553990 TTGTTCTTCAATCGTTTTGTGATTAGGCACTATAAACACATTATCCTCTTTA
903 CTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* * * * *
554042 GGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-TTTTTTTGCACTTATTTTCCTTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
* * * * * *
554105 AATCAAAGTTCATCCCTAAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTCTTTTCAAG
66 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
* * * ** *
554170 ATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACATAACATTGACGCTTTGGTGTCGCAAG
131 ATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAG
* * *
554234 AAAAGCTTTTCTTTCCACCATTTTTGAGAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTA
195 AAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* *
554299 ATGGTCATACTAATCCCCATTTTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * * *
554364 GCATGACAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTGTTATAAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * * * * *
554429 TTTTCGTGCCACATATGAGCAAAACAAGGATTCTAGTACTGTTCTAT-ATTTGTTTTGTAATTAG
389 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCT-TCATTCGTTTTGTGATTAG
* * *
554493 GCATTGTAAACACATTATCCTCATTAGGATAAA-GATATTGATGATTTTCTTTTCA-TGCAAATC
453 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTG-AAATC
* * * * *
554556 TTTTTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTTCAACAAGACAAGCATCGATT
517 --TTTTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGAAAAGCATCGATT
* * * * * * ** *
554621 CTCGCAAAAATCTCCATTTTTTTCAAGATTGGCACCCAAAAATACGTCCCCTTCTTTAGGATACA
579 CTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACA
* * * ** * * * * *
554686 CGACGTTGATGCTTTGGCATCGCAAGACAAGCTTTTTTTTCCATCTTTTTTGATAGAATCAAAGT
644 CAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGT
* * ** * * * * *
554751 TTACCTCTTAAGTAAGGCAAACATGAATGGTCATACTAATTCCCAATAT-TTCTC-GGATTAGGC
709 TTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAA-TCCCTAT-TCTTTTCGGGATTGGGC
* * * * * * * *
554814 ACCATCATAAACATACTCTTCTCATTAGGATGTATGATATTGATGCTTCGGTTTCTCAAGAAA-A
772 A-C--CATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGA
* * * * * * * *
554878 GCTTTCTTCTGACCAATTATTA-CAAAGTCTAAG-TCTGTGCCTCAAATGAGCCAAACATGGATT
834 -CTTTTTTCCGACCAATTATTATAAAAGTCTATGTTC-GTGCCACATATGAGCAAAACAAGGATT
* * * * * * * ** * *
554941 CTTGTG-TTGATC-ATCATTCATTTTCTTATTAGGCACTAAAAACACATTCTCCTCGTTA
897 CTAG-GACTGTTCTA-CATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* * * *** *
554999 GGATAAAAGATATTGATGATTTTCTTTACATGGAAAT-GT-TTTCCATGACCT-A-TTTCTCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTC-CTTA
* * *
555060 AAATCAAAGTTCATCCCT-CAAATAAGACAA-CTATCGATTCT-GTTAACAATCTCCTTTCTTTT
65 AAATGAAAGTTCATCCCTAC-AATAAGACAAGC-ATCGATTCTCG-TAACAATCCCCATTCTTTT
* * * * * * * ** * * *
555122 CAAGATTGGGAACCAAAAACACTTTCCCATCTTTAAGATACTTGACATTGATGCTCTGGTGTCGC
127 CAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGC
* * * * * * * * * * *
555187 TAGAAAAGATTTTCCTTCCACAGTTTTTTATAAAATCAAAGTTTGCCCCTTAAAA-GAGACAAAC
192 AAGAAAAGCTTTTCTTTCCAC-CTTTTTGATAGAATCAATGTTTGCCTC-TAAAATAAAACAAAT
* * * * * *
555251 ATGAATGGTTATA-TAAATCCCCATTCTTTTCGGGAATAGGCATCATAAACGAAGTCTTCTCATA
255 ATTAATGGTCATACT-AATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATA
* * * *
555315 AGGATGTATGATAATGATGCTTTGGTTTCTCAA-AAAGGGCTTTCTTCTGACCGATTATTATAAA
319 AGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAAA
* *
555379 AGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTAGTG
383 AGTCTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTG
* * * *
555444 ATTCGGCATTGTAAACACATTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGA
448 ATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGA
** * * * *
555509 AATCTTTTTTTTTTGCACTTGTTTTACTTTAAATCAAAGTTCATCCCCTAAATAAGAAAAACATT
513 AATC--TTTTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCAT-CCCTAAATAAGAAAAGCATC
* * * * *
555574 GATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGTCCCAAAAACGCATTGTCTTCATTATGA
575 GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGA
**
555639 TACACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCA
640 TACACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* *
555704 ATGTTTGCCTCTTAAATAAAACAAATGTTAATGGTCATACTAATCCCCATTCTTCTT-GGGATTG
705 ATGTTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTT-TTCGGGATTG
555768 GGCACCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGA
769 GGCACCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGA
* *
555833 CTTTTTTCAGTCCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCT
834 CTTTTTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCT
* *
555898 AGGACTATTGTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
899 AGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* ** * **
555954 CGATAAATGATATTGATGATTTTCTTTTTGTGGAAATCTTATTTTTTTCCCCTAATTACCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
*
556019 AATGAAAGTTCATCCCTACAGTAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
66 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
* * *
556084 ATTGAGACCCAAAAAGACATTCTCTTGATTAGGATACACGACATTGACGCGTTGGAGTCGCAAGA
131 ATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAGA
* * *
556149 AAAGCTTTTCTTTCCACCATTTTGATGGAATCGATGTTTGCCTCTAAAATAAAACAAATATTAAT
196 AAAGCTTTTCTTTCCACCTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
* * * * * * *
556214 GGTCATACTAATTCCTATCCTTTTCGGGGTTGCGCACCATAAACATAGTCTTCTCTTAAGGTTGC
261 GGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGC
* * * * *
556279 ATGATAACGATGCTTTGGTTTCCCAAGAAGGGCTTTCTTCTGACCAATTCTTATAAAAGTCTATG
326 ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
* *
556344 TTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTATGCA
391 TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCA
* * * * *
556409 CTATAAACACATTATCGTCTTTAGGATAAATGATTTTAATGATTGTCTTTCCATTGAAATCTTTT
456 CTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTT
* * * * *
556474 TTTTGCACTTATTTTCCTTTAAATCAAAGTTCATCCCATAAATAAGAAAGGCATTGACTCTCGTA
521 TTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGAAAAGCATCGATTCTCGTA
* * *
556539 ACAATCTCCATTCTTTTCAAGATTGGGCCCCAAAAACACATTGCCTTTATTATGATACACAACAT
585 ACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACACAACAT
* * * *
556604 TGACGCTTTGGTGCCGCAAGAAAAGCTTTTCATTCTACCGTTTTTAATAGAATCAATGTTTGCCT
650 TGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCT
* * *
556669 CTTAAATAAAACAAATGTTAATGGTCGTACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAA
715 CTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCATAAA
*
556734 CGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAACAAAGACTTTTTTCCGA
780 CGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGA
*
556799 CCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACAGTTCT
845 CCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCT
*
556864 ACATTCGTTTTGTAATTAGGCATTATAAACACATTATCCTCATTA
910 ACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
556909 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
*
556974 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCTATTCTTTTCAAG
66 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
* * * *
557039 ATTGAGACCCAAAAACACATTGTCTTCATTAAGATACACGACA-TGACGCGTTAGAGTCGCAAGA
131 ATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAGA
557103 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
196 AAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAA
* ** * * *
557168 CGGTCATACTAATCCTTATGCTTTTCGGGATTGGGCACCATAGACGTAGTCTTCTTATAAGGTTG
260 TGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTG
* * * **
557233 CATGATAATTATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACTGATTATTATAAAAGTCTAT
325 CATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTAT
*
557298 GTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGCATTGTTCTTCATTCGTTTTGTGATTAGGC
390 GTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGC
*
557363 ACTATAAACACATTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTT
455 ACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTT
* * * * *
557428 TTTTTGCACTTATTTTCCTTTAAATCATAGTTCATCCCTTAAATAGGAAAAGCATTC-ACTCTCG
520 TTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGAAAAGCA-TCGATTCTCG
* * * *
557492 TAACAGTCTCCACTCTTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACAAC
583 TAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACACAAC
* * *
557557 ATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAATGCTTGC
648 ATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGC
* * *
557622 CTCTTAAATAAAACAAATGTTAATGGTCATTCTAATCCCTATTCTTTTCAGGATTGGGCACCATA
713 CTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCATA
* * * *
557687 AACGTAGTCTTCTCACAAGTTTGCATGACAATGATGCTTTGTTTTCTTAAGAAAGACTTTTTTCC
778 AACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCC
557752 GACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTT
843 GACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTT
* * *
557817 CTACATTCGTTTTTTAATTAGGCATTTTACACACATTATCCTCATTA
908 CTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
557864 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
557929 AATGAAAGTTCATCCCTACAATAAGACAAG-ATTCGATTCTCGTAACAATCCCC-TCTCTTTTCA
66 AATGAAAGTTCATCCCTACAATAAGACAAGCA-TCGATTCTCGTAACAATCCCCAT-TCTTTTCA
*
557992 AGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCGTTGGAGTCGCAA
129 AGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAA
* * *
558057 GAAAAGTTTTTCTTTCTACTGTTTTTGATAGAATCAAT-TTTCGCCTCTAAAATAAAACAAATAT
194 GAAAAGCTTTTCTTTCCAC-CTTTTTGATAGAATCAATGTTT-GCCTCTAAAATAAAACAAATAT
* * * *
558121 TAATGGTCATACTAATCCCTACTCTTTTTGGGATTGGGCACCATAGACGTAGTCTTCTCATAAGG
257 TAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGG
* * * ** *
558186 TTGCATGATAACGATGCTTTGGTTTCTCAA-AAAGGGTTTTCTTCTGACTGATTATTATCAAAGT
322 TTGCATGATAATGATGCTTTGGTTTCTCAAGAAA-GGCTTTCTTCCGACCAATTATTATAAAAGT
* * *
558250 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAATATTGTTCTTCAGTCGTTTTGTGATT
386 CTATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATT
* *
558315 AGGCACTATAAACACGTTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAAT
451 AGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAAT
* * * * *
558380 CTTTTTTTTGCACTTATTTTCCTTTAAATCAAAGTTGATCCCTAAAATAAGAAAAGCATTGACTC
516 CTTTTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCCT-AAATAAGAAAAGCATCGATTC
* * * *
558445 TCGTAACAATCTCCATTCTTTTCAAGATTGGGTCCCAAAAACACATTGTCGTCATTATGATACAC
580 TCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACAC
558510 AACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTT
645 AACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTT
* * *
558575 TGCCTCTTAAATAAAACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACC
710 TGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACC
* *
558640 ATAAACGTAGCCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGTCTTTTT
775 ATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTT
*
558705 TCCGACCAAATATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACT
840 TCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACT
*
558770 GTTCTACATTCGTTTTGTCATTAGGCATTGTAAACACATTATCCTCATTA
905 GTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* *
558820 GGATAAATGATTTTGATGATTTTCATTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
* * * **
558885 AATAAAATTTAATCCCTACAATAAGATGAGCATCGATTCTCGTAACAATCCCC-TCTCTTTTCAA
66 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCAT-TCTTTTCAA
* *
558949 GATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCATTGGAGTCACAAG
130 GATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAG
* *
559014 AAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAAAACAAATATTA
195 AAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * ** *
559079 ATGGTCAAACTAATCCCTATTCTTTTTAGGATTGGGCACCATAGACGTAGTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * * *
559144 GCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTATTAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* *
559209 TGTT--TGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTCGTTTTGTGATTAGG
389 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGG
* * *
559272 CACTATAAACACATTATCCTCTTTAGGAAAAATGATATTGATGATTTTCTTTCCATTGAAATCTG
454 CACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTT
* * * *
559337 TTTTTTGCACTAATTTTCCTTTAAATCAAAGTTCTTCCCTTAAATAAGAAAAGCATTGACTCTCG
519 TTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGAAAAGCATCGATTCTCG
* * *
559402 TAACAATCTCCATTCTTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCAATATGATACACAAC
583 TAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACACAAC
* *
559467 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAATGTTTGC
648 ATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGC
* * * *
559532 CTCTTAAATAAAATAAATGTTAATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATA
713 CTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCATA
* *
559597 AACGTATTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTTTTAAGAAAGACTTTTTTCC
778 AACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCC
* * *
559662 GACCAGTTATTATAAAAGTCTATGTTCGTGCCAAATATGAGCAAAACAAGGATTCTAGGACTATT
843 GACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTT
*
559727 CT-CTATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTAATTA
908 CTAC-ATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* * *
559774 GGATAAACGATATTGATGATTTTCTTTTCATGGTAATCTTTTTTTTTTTGCCCT-ATTTTCCTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATC-TTATTTTTTTGCCCTAATTTTCCTTA
* * *
559838 AAATGAAAGTTCATCCCCACAATAAGACAAGCATCGATTCTCGTAACAATCCCCACTATTTTCAA
65 AAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAA
* * *
559903 GATTGAGACCCAAAAACACATTCTCTTGATTAGGATACACGACATTGACGCGTTGGAGTCGCAGG
130 GATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAG
*
559968 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAAGCAATGTTTG-CTCTAAAATAAAACAAATATTA
195 AAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
* * * *
560032 TTGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTCTCATAAGGT
259 ATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* *
560096 TGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTTTCTTCCGACCGATTATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * * * * *
560161 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAG
388 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAG
* * * *
560226 GCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT
453 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-
* *
560291 TATTTTTTTGCCCTAATTTTCCTTAAAAT-AAGAGTTCATCCCTACAATAAGACAAGCATCGATT
517 T-TTTTTTTGCACTAATTTTCCTTAAAATCAA-AGTTCATCCCTA-AATAAGAAAAGCATCGATT
* * * *
560355 CTCGTAACAATC-CCTATTCTTTTCAAGATTGAGTCCCAAAAACACATTGCTTTCATTATGATAC
579 CTCGTAACAATCTCC-ATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATAC
*
560419 ACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATG
643 ACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATG
* * *
560483 TTTG-CTCTAAAATAAAACAAATATTATTGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGC
708 TTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-GATTGGGC
* *
560546 ACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGGCTT
772 ACCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTT
* *
560611 TCTTCCGACCGATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGG
837 TTTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGG
* * * *
560676 ATTGCTCTACTTTTGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
902 ACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
560729 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
*
560794 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCTATTCTTTTCAAG
66 AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
* * * *
560859 ATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGACGCTTTGGTGTCGCAAG
131 ATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAG
* * *
560923 AAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTA
195 AAAAGCTTTTCTTTCCACC-TTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTA
560987 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
259 ATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTT
* * * *
561052 GCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAAATATTATAAAAGTCTA
324 GCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTA
* * * * * * * *
561117 TGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAAGTAGG
389 TGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGG
* * * *
561182 CATTGTAAACACATTATCCTCATTAGGATAAATGATTTTGATGATTTTCATTT-CATGGAAATCT
454 CACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTCCATTGAAATC-
* * * **
561246 TATTTTTTTGCCCTAATTTTCCTTAAAATAAAAGTTAATCCCTACAATAAGATGAGCATCGATTC
517 T-TTTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCCTA-AATAAGAAAAGCATCGATTC
* *
561311 TCGTAACAATC-CCCTCTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATAC
580 TCGTAACAATCTCCAT-TCTTTTCAAGATTGGGACCCAAAAACACATTGC-CTTCATTAGGATAC
* * * * * *
561374 ACGACATTGACGCATTGGAGTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATG
643 ACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATG
* *
561439 TTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCAGGATTGGGCA
708 TTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCA
* * * * * *
561504 CCATAGACGTAGTCTTCCCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTT
773 CCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTT
* * * * * * * *
561569 CTTT-TGACCGATTATTATTAAAGTCTATGTT--TGCCTCAAATGAGCCAAACAAGGATTCCAGT
838 -TTTCCGACCAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGG
* ** * * * *
561631 ATTGTTCTTTATTCGTTTTGTGATTAGGCACTATAAACACATTATCCTCTTTA
902 ACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
* * * * * *
561684 GGAAAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-GTTTTTTGCACTAATTTTCCTTTA
1 GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
* * * * * * *
561747 AATCAAAGTTCTTCCCTTA-AATAAGAAAACCATTGACTCTCGTAACAATCTCCATTCTTTTCAA
66 AATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAA
* * * * * *
561811 GATTGGGTCCCAAAAACACATTGC-CTTCAATATGATACACAACATTGACGCTTTGGTGTCGCAA
130 GATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAA
* * * *
561875 GAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAATAAATGTT
194 GAAAAGCTTTTCTTTCCAC-CTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATT
* *
561940 AATGGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGCCTTCTCATAAGGT
258 AATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGT
* * * *
562005 TGCATGATAATGATGCTTTGGTTTCTTAAGAAAGTCTTTTTTCCGACCAAATATTATAAAAGTCT
323 TGCATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCT
* * * * * * *
562070 ATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTCATTAG
388 ATGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAG
* * * *
562135 GCATTGTAAACACATTATCCTCATTAGGATAAATGATTTTGATGATTTTCATTT-CATGGAAATC
453 GCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTC-TTTCCATTGAAATC
* * * * **
562199 TTATTTTTTGCCCTAATTTTCCTTAAAATAAAATTTAATCCCTACAATAAGATGAGCATCGATTC
517 TT-TTTTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCCTA-AATAAGAAAAGCATCGATTC
* *
562264 TCGTAACAATC-CCCTCTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATAC
580 TCGTAACAATCTCCAT-TCTTTTCAAGATTGGGACCCAAAAACACATTGC-CTTCATTAGGATAC
* * * * * *
562327 ACGACATTGACGCATTGGAGTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATG
643 ACAACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATG
* *
562392 TTTGCCTCTAAAATAAAACAAATATTAATGGTCAAACTAATCCCTATTCTTTT
708 TTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTT
562445 TAGGATTGAG
Statistics
Matches: 9237, Mismatches: 932, Indels: 289
0.88 0.09 0.03
Matches are distributed among these distances:
951 67 0.01
952 146 0.02
953 879 0.10
954 2035 0.22
955 2864 0.31
956 1575 0.17
957 1192 0.13
958 473 0.05
959 6 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (954 bp):
GGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAA
AATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAG
ATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGAGTCGCAAGA
AAAGCTTTTCTTTCCACCTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAAT
GGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGC
ATGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAATTATTATAAAAGTCTATG
TTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCA
CTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTT
TTTTGCACTAATTTTCCTTAAAATCAAAGTTCATCCCTAAATAAGAAAAGCATCGATTCTCGTAA
CAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTGCCTTCATTAGGATACACAACATT
GACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTC
TTAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCATAAAC
GTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGAC
CAATTATTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTA
CATTCGTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTA
Found at i:562762 original size:366 final size:365
Alignment explanation
Indices: 562086--562810 Score: 1139
Period size: 366 Copynumber: 2.0 Consensus size: 365
562076 GTGCCACATA
* *
562086 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTCATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGACTGCTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* *
562151 ATCCTCATTAGGATAAATGATTTTGATGATTTTCATTTCATGGAAATCTTATTTTTTGCCCTAAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCATTTCAGGGAAATCTTATTTTTTGCCCTAAT
* **
562216 TTTCCTTAAAATAAAATTTAATCCCTACAATAAGATGAGCATCGATTCTCGTAACAATCCCCTCT
131 TTTCCTTAAAATAAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCTCT
*
562281 CTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCATTGGA
196 CTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACAACATTGACGCATTGGA
*
562346 GTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAAAAC
261 GTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAAC
* *
562411 AAATATTAATGGTCAAACTAATCCCTATTCTTTTTAGGAT
326 AAATATTAATGGTCAAACAAATCCCCATTCTTTTTAGGAT
* * **
562451 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTTTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGACTGCTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
562516 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAGGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCATTTCAGGGAAATCTTA-TTTTTTGCCCTAA
* *
562581 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAAT-CCCTA
130 TTTTCCTTAAAATAAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCT-
* * * *
562645 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGACGCTTT
194 CTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACAACATTGACGCATT
* * * * * *
562709 GGTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAA
258 GGAGTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAA
* *
562774 AACAAATATTAATGGTTATACAAATCCCCATTCTTTT
323 AACAAATATTAATGGTCAAACAAATCCCCATTCTTTT
562811 CGGGATTGGG
Statistics
Matches: 327, Mismatches: 30, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
365 111 0.34
366 214 0.65
367 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (365 bp):
TGAGCAAAACAAGGATTCTAGGACTGCTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
ATCCTCATTAGGATAAATGATATTGATGATTTTCATTTCAGGGAAATCTTATTTTTTGCCCTAAT
TTTCCTTAAAATAAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCTCT
CTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACAACATTGACGCATTGGA
GTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAAAC
AAATATTAATGGTCAAACAAATCCCCATTCTTTTTAGGAT
Found at i:563791 original size:477 final size:478
Alignment explanation
Indices: 562451--577701 Score: 21154
Period size: 479 Copynumber: 31.9 Consensus size: 478
562441 TTTTTAGGAT
* * **
562451 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTTTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
562516 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAGGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
562581 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CCTA
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * *
562645 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGACGCTTT
194 TTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTT
* * *
562709 GGTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAA
258 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * *
562774 AACAAATATTAATGGTTATACAAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
323 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
562839 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
388 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
562904 ATAAAAGTCTATGTTCGTGCCACATA
453 ATAAAAGTCTATGTTCGTGCCACATA
* * *
562930 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* *
562995 ATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCAAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* *
563060 TTTTCCTTAAAATCAAAGTTCATCCCTACAATAAGAGAAGCATCGATTCTCGTAACAATC-CCTA
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC-A
* * *
563124 TTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATATATGACATTGACGCGTTG
194 TTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTG
*
563189 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* ** *
563254 ACAAATATTAATGGTCATACTAATCCTTATTCTTTTCGGGATTGGGCACCATAGACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* * * * * * *
563319 TCATAAGCTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* * *
563384 TAAAAGTATATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * * * * *
563409 TGACCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * * * * *
563474 ATCCTCTTTAGGATAAATGATATTGATGATTTTCCTTCCTTTGAAATC-TTTTTGTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * *
563538 TTTCC-TATAAATGAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
131 TTTCCTTA-AAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* * * * *
563601 TTCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACGATATTGATGCTTT
194 TTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTT
* *
563665 GGTGTCGCAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
258 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * *
563730 AGCAAATGTTAATGGTCATACTAATCCCCATTCATTTCAGGATTGGGCACCATAAACGTAGTCTT
323 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
*
563795 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATT
388 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
563860 ATAAAAGTCTATGTTCGTGCCACATA
453 ATAAAAGTCTATGTTCGTGCCACATA
*
563886 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * *
563951 ATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTCCTCGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * *
564016 TTTTCCTTAAAATGAACGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CC-C
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
*
564079 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* * *
564144 AGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTTCCTCTAAAATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
* * * * *
564209 CGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTC
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTC
564273 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* * *
564338 TAAAAATCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * ** * * * * *
564363 TGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTTGTTTTGTGATTAAGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * * * *
564428 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTCTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
564492 TTTCCTTTAAATCAAAGTTCATCTCCTA-AATAAGAAAAGCATTGACTCCCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATC-CCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * *
564556 TCTTTTCAAGATTGAGTCCTAAAAACACATTGCT-TTCATTATGATACACAACATTGATGCTATG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* * *
564620 GTGTCGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTCGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
**
564684 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGATATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
564749 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
*
564814 TAAAAATCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * *
564839 TAAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAGGCAATGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
564904 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCAAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * *
564969 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGAGAAGCATCGATACTCGTAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
565034 TTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTTACG-TGTTA
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCT-TTG
** *
565098 GAGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * *
565163 ACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCATAGACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* * * * * *
565228 TCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* *
565293 TAAAAGTCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * * * *
565318 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * *
565383 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
565447 TTTTCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
565511 TCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACGATATTGATGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
*
565575 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * * *
565640 GCAAATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTATTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* *
565705 TCATAAGGTTGCAAGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
565770 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
*
565795 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * *
565860 ATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTCCTCGAAATCTTATTTTTTTGCCCTGA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* *
565925 TTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CC-C
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* *
565988 TCTTTTCAAGATTGAGACCCAAAAACACATTCTGTTCATTAGGATACACGACATTGACGCATTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* * *
566053 AGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTTCCTCTAAAATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
* * * * *
566118 CGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTC
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTC
566182 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* * *
566247 TAAAAATCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * ** * * * * *
566272 TGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTTGTTTTGTGATTAAGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * * * *
566337 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTCTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
566401 TTTCCTTTAAATCAAAGTTCATCTCCTA-AATAAGAAAAGCATTGACTCCCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATC-CCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * *
566465 TCTTTTCAAGATTGAGTCCTAAAAACACATTGCT-TTCATTATGATACACAACATTGATGCTATG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* * *
566529 GTGTCGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTCGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
**
566593 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGATATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
566658 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
*
566723 TAAAAATCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * *
566748 TAAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAGGCAATGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
566813 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCAAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * *
566878 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGAGAAGCATCGATACTCGTAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
566943 TTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTTACG-TGTTA
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCT-TTG
** *
567007 GAGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * * *
567072 ACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATGGGGCACCATAGACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* * * * * *
567137 TCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* *
567202 TAAAAGTCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * * * *
567227 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * *
567292 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * *
567356 TTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
567420 TCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACGATATTGATGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
*
567484 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * *
567549 ACAAATGTTAATTGTCATACTAATCCCCATTGTTTTCAGGATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
*
567614 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
567679 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * *
567704 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAGGCAATGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
567769 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* *
567834 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATACTCGTAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * *
567899 TTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGAATAAATGACATTGACG-TGCTA
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCT-TTG
* *
567963 GAGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTAAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* *
568028 ACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTGGGCACCA-AAGACGTAGTCTT
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAA-ACGTAGTCTT
* * * * * * *
568092 CTCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGATCGATTATT
388 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
* *
568157 ATAAAAGTCTATGTTCGTGCCTCAAA
453 ATAAAAGTCTATGTTCGTGCCACATA
* * * * * * *
568183 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * *
568248 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
568312 TTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCTAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * *
568376 TCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACGATATTGATGCTTTT
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* *
568440 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTACCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * *
568505 ACAAATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTATTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
*
568570 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
568635 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
*
568660 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
568725 ATCCTCATTATGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTTTGCCCT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC---TTTTTTTTTGCCCT
*
568790 AATTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CC
128 AATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC
* *
568854 CTCTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCGT
193 AT-TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTT
* *
568919 TGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATA
257 TGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATA
* * * *
568984 AAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCAGGATTGGGCACCATAGACGTAGTCT
322 AAACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
* * * * * * * *
569049 TCTCATAAGGTTGTATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGATCGATTAT
387 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTAT
* *
569114 TATAAAAGTCTATGTT--TGCCTCAAA
452 TATAAAAGTCTATGTTCGTGCCACATA
* * * * * * * * *
569139 TGAGCCAAACAAGGGTTCCAGTATTGTTCTTCTTTCGTTTTGTGATTAGGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
** * * * *
569204 ATCCTTTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTCTGTTTTGCACTT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTT-T-TTTTGCCCTA
* * * * *
569269 ATTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCC
129 ATTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCC
* * * * * *
569333 ATTCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCAATATGATACACAACATTGATGCTT
193 ATTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTT
*
569397 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATA
257 TGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATA
*
569462 AAACAAATGTTAATGGTCGTACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
322 AAACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
* * * *
569527 CCTAATAAGGTTGCTTGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTAT
387 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTAT
569592 TATAAAAGTCTATGTTCGTGCCACATA
452 TATAAAAGTCTATGTTCGTGCCACATA
* * *
569619 TGAGCAAAACAAGGATTCTAGGAATATTCTACATTCGTTTTCTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
569684 ATCCTCATTATGATAAATGATATTGAT-ATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCT-AT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
** * *
569747 TTTCCTTTGAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACT
131 TTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* * * *
569812 ATTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGATGCGTTGAA
196 CTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGA
*
569877 GTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAATGTTTGCCTC-TATAATAAAA
261 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTA-AATAAAA
* * * * * *
569941 TAAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTGTTC
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTC
* * * * *
570005 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* *
570070 TAAAAGTCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * *** * * * * *
570095 TGAGCCAAACAAGGACTCCAGTATTGTTCTTTTTTCGTTTTCTGATTAGGTACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
570160 ATCCTCATTAGGATAAATGATATTGATGAGTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * *
570225 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCATTACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * *
570290 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* * **
570355 AGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAATGTCTGCCTCTTCCATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
* *
570420 CAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATACACGTAGTCTTCT
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCT
570485 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTAT
390 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTAT
*
570550 AAAAGTCTATGTTCGTGCCACATT
455 AAAAGTCTATGTTCGTGCCACATA
*
570574 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * **
570639 ATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTGG
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
*
570704 TTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCC--
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* *
570767 TCTTTTCAAGATTGAGAACCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* * *
570832 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAATGTTTTCCTCTAAAATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
** * * * *
570897 TGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTCTTC
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTTC
* * * * *
570961 TCATAAGGTTGCATGATAATAATGCTTTGGTTTCTTAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* *
571026 TAAAAGTCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * ** * * * *
571051 TGAGCTAAACAAGGATTCCAGTATTGTTCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * * * *
571116 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTCTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
571180 TTTCCTTTAAATCAAAGTTCATCCCCTA-AATAAGAAAAGCATTGACTCCCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCAT-CCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
571244 TCTTCTCAAGATTGAGTCCCAAAAACACATTGCT-TTCATTATGATACACAACATTGATGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* *
571308 GTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
571373 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
571438 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
*
571503 TAAAAATCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * *
571528 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGTAATTAGGCAATGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
571593 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGAAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
*
571658 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * *
571723 TTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTGAC-TTGTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCT-TTG
* *
571787 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAATGTTTGCCTCTAAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
** * * ** *
571852 ACAAATAATAATGGTCACACTAATCCCTATTCTTTTCAAGATTGGGCACCATAGACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* * * * * *
571917 TCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
* *
571982 TAAAAGTCTATGTTCGTGCCTCAAA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * * * * * * *
572007 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCATTTTTTGATTAGGCAATATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * *
572072 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
572136 TTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCTAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
572200 TCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCTTTATGATACACAACATTGACGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
*
572264 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* *
572329 ACAAATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
572394 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
572459 TAAAA--CTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * *
572482 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTCTGTAATTAGGTATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
**
572547 ATCCTCATTATAATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTTTGCCCTA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATC--TTTTTTTTTGCCCTA
* *
572612 ATTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATC-CCC
129 ATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCA
* *
572676 TCTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACACGTT
194 T-TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTT
* *
572741 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAATGTTTGCCTCTAAAATAA
258 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * ** *
572806 AACAAATATTAATGGTCATACTAATCCCTATTCTTTTTAGGATTGGGCACCATAGACGTAGTCTT
323 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
* * * * * * * *
572871 CTCCTAAGGTTGTATGATAACGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATT
388 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
* *
572936 ATAAAAGTCTATGTT--TGCCTCAAA
453 ATAAAAGTCTATGTTCGTGCCACATA
* * * * * * * *
572960 TGAGCCAAACAAGGGTTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * * * * * *
573025 ATCCTCTTTGGGATAATTGATAATGATGATTTTCTTTCCATTGAAA--TTTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * *
573088 TTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * *
573152 TCTTTTCAAGATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACAACATTGACGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* *
573216 GAGTCGCAAGAAAAGCTTTTCTTTCCAGCGTTTTTGATAGAATCAATGTTTGCCTTTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* *
573281 ACAAATGTTAATGGCCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTCC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
*
573346 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
573411 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* *
573436 TGAGCAAAACAAGGATTCTAGGAATATTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * *
573501 ATCCTCATTATGATAAATGATATTGACGTTTTTCTTTTCATGGAAATCTGTTTTTTTTGCCCT-A
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCT-TTTTTTTTGCCCTAA
* * * *
573565 TTTTCCTTAGAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCATAACACTCTCCAC
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
573630 TATTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCGTTGA
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
573695 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTC-TATAATAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTA-AATAAA
* * * * *
573759 ACAAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATTGGGCACCATAGACGTAGTGTT
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGG-GATTGGGCACCATAAACGTAGTCTT
* * * * * *
573823 CTCATAGGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTATT
388 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
* *
573888 ATAAAAGTCTATGTTCGTGCCTCAAA
453 ATAAAAGTCTATGTTCGTGCCACATA
* * * * * * *** * * * *
573914 TAAACCAAACAAGGACTCCAGTATTGTTCTTTTTTCGTTTTCTGATTAGGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
573979 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* *
574044 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCATAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
574109 TCTTTTCAACATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTGACGCGTTGA
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* *
574174 AGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAATGTTTGCCTCTTACATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
*
574239 CAAATGTTAATGGTCATACTAAT-CCCATTCATTTT-GGGATTGGGCACCATACACGTAGTCTTC
325 CAAATGTTAATGGTCATACTAATCCCCATTC-TTTTCGGGATTGGGCACCATAAACGTAGTCTTC
*
574302 TCATAAGGTTGCATGATAATGATGCTTCGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
574367 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
*
574392 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
574457 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
*
574522 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCATAACAAATC-CCA
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAAC-AATCTCCA
* * * * * *
574586 TTCTTTTCAAGATTGATACCGAAAAACACTTTCTCTTCATTAGGATAAATGACATTGACGCGTTG
194 TTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTG
*
574651 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* *
574716 ACAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACATAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
** *
574781 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCAAACAAATTATTA
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTA
574846 TAAAAGTCTATGTTCGTGCCACATA
454 TAAAAGTCTATGTTCGTGCCACATA
* * * *
574871 TGAGCAAAACAAGGATTCTAGGACTGCTCTACATTTGTTTTGTAATTAGGCGTTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * *
574936 ATCCTCATTATGATAAATGATATTGATGATTTTCATTTCATGGAAATCTTATTTTTTTGTCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* *
575001 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCATAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * *
575066 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATAAATGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
*
575131 AGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
*
575196 CAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACGTAGTCTTCT
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCT
**
575261 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCAACCAATTATTAT
390 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTAT
*
575326 AAAAGTCTATGTTCATGCCACATA
455 AAAAGTCTATGTTCGTGCCACATA
* * *
575350 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTTGTTTTGTAATTAGGCATTTTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
*
575415 ATCCTCATTAGGATAAATGATATTGATGTTTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * *
575480 TTTTCCTTAAAATGAAAGTTCATCCCTATAATAAGACAAGCATCGATTCTCATAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * *
575545 TCTTTTCAAGATTGAGACCCAAAAACACGTTCTCTTCATTAGGATAAATGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* *
575610 AGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
260 AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAA
*
575675 CAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACGTAGTCTTCT
325 CAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCT
**
575740 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCAACCAATTATTAT
390 CATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTAT
*
575805 AAAAGTCTATGTTCATGCCACATA
455 AAAAGTCTATGTTCGTGCCACATA
* * *
575829 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTTGTTTTGTAATTAGGCATTTTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* *
575894 ATCCTCATTAGGATAAATGATATTGATGTTTTTTTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTT-TTTTTTTGCCCTAA
* * * *
575959 TTTTCCTTAAAATGAAAGTTCATCCCTATAATAAGACAAGCATCGATTATCATAACAATCCCCAT
130 TTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * * *
576024 TCTTTTCAAGATTGAGACCCCAAAACACGTTCTCTTTATTAGGATAAAAGACATTGACGCGTTGG
195 TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGG
* * *
576089 AGTCGCAAGAAAAGCTTTT-TTTCCCACCGTTTTTGATAGAATTAATGTTTGCCTCTAAAACAAA
260 AGTCGCAAGAAAAGCTTTTCTTT-CCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* * * * *
576153 ACAAATATTAATGGTCATACTAATCCCTAATCTTTTCGGGATTGGGCACCATAGACGTAGTATTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* * * *
576218 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCATA-AAAGGCTTTCTTCCGACCAATTATT
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTA-AGAAAGACTTTTTTCTGACCAATTATT
*
576282 ATTAAAA-TCTATGTTCGTGCCACAAA
453 A-TAAAAGTCTATGTTCGTGCCACATA
* ** * *
576308 TGAGCCAAACGGGGATTCTAGTACTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * *
576373 ATCCTCATTAAGATAAATGATATTGATGATTTTCTTTTCATAGAAATC-CTTTTTTTGCCCTAAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * * * * *
576437 TTTCCATAAAATCAAAGTTCGTCGCTTCAGTAAGTCAAGCATCGATTCTCGCAACAATCTCCTTT
131 TTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
* * * * * *
576502 CTTTTCAA-ACTT-AGCACCTAAAAATACGTTCCCTTCATTAGGATACACGACGTTGATGCTTTG
196 CTTTTCAAGA-TTGAG-ACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTG
* * * * * * *
576565 GCA-TCACAAGACAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTACCTCTTAAGTAA
259 G-AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* ** * * * * ** * *
576629 GACAAACATGAATGGTCATACTAATTCCCTTTCTTTCCCAGATTAGGCACCATCATAAGCATAGT
323 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCAT-A-AA-CGTAGT
* * * * * * *
576694 CTTCTCATAAGGATGTATTATATTGATGCTTCGGTTTCTCAAGAAA-AGCTTTATTCTGACCAAT
385 CTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGA-CTTTTTTCTGACCAAT
* * * *
576758 TATTATAAAA-TCTAAGTTCATGCCTCAAA
449 TATTATAAAAGTCTATGTTCGTGCCACATA
* * * * * * **
576787 TGAGCCAAACATGGATTCTAGTG-TTGAT-TATCATTCATTTTGTTATTAGGCACTAAAAACACA
1 TGAGCAAAACAAGGATTCTAG-GATTGTTCTA-CATTCGTTTTGTAATTAGGCATTGTAAACACA
* * * * * *** *
576850 TTCTCCTCATTGGGATAAATGATATTGATGATTTTCTTTACTTGGAAAT-GTTTTCCATGACCT-
64 TTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTA
* * ** ** * *
576913 ATTTTTCTTAAAATCAAAGTTCATCCCTTTAATTCGACAA-CTATCGATTCTTGTAAAAATCTCC
129 ATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGC-ATCGATTCTCGTAACAATCTCC
* * * * * * * ** * *
576977 ACTCTTTTCAAGATTGGGATCCAAAAACACTTTCCCATCTTTAGGATACTTGACATTGATGCTCT
193 ATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTT
* * * * * * *
577042 GGTGTCGCTAGAAAAGATTTTCTTTCCACTGTTTTTCATAAAATCAAAGTTTGCCTCTTAAATAA
258 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * * * * * ** * *
577107 GACAAACCG-GAATGGTTATACTAATCCCCATTCTTTTCGGGAATAGGTGCCATAAATGAAGTCT
323 AACAAA-TGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
* * * * * * *
577171 TCTTATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTAT
387 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTAT
* * *
577236 TATAAAAGTCTATGTTTGCGCTC-CAAA
452 TATAAAAGTCTATGTTCGTGC-CACATA
* * * * * * * * *
577263 TGAGCGAAACAAGGATTCTAGTATTGTTCTTCCTTGGTTTCGTGATTAGGCACTATAAACACATT
1 TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
* * * *
577328 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATC-TTTTTTTTGCACTTAT
66 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
* * * * * *
577392 TTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCCCGTAACAATCTCCAT
131 TTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATCTCCAT
* * * * *
577456 TCTTTTCAACATTGGGTCCCAAAAACACATTGC-CTTCATTATGATACACAACATTGACGCTTTG
195 TCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATACACGACATTGACGCTTTG
* * * *
577520 GTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAATGTTTGCCTCCTAAATAAA
259 GAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
*
577585 ACAAATGTTAATTGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
324 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
*
577650 TCATAAGGATGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTC
389 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTC
577702 CTTGAAAGAT
Statistics
Matches: 13097, Mismatches: 1525, Indels: 302
0.88 0.10 0.02
Matches are distributed among these distances:
474 310 0.02
475 369 0.03
476 1192 0.09
477 4034 0.31
478 2093 0.16
479 4618 0.35
480 171 0.01
481 310 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (478 bp):
TGAGCAAAACAAGGATTCTAGGATTGTTCTACATTCGTTTTGTAATTAGGCATTGTAAACACATT
ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTTTTTTTTGCCCTAAT
TTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCATCGATTCTCGTAACAATCTCCATT
CTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGGATACACGACATTGACGCTTTGGA
GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAAC
AAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTC
ATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTATA
AAAGTCTATGTTCGTGCCACATA
Found at i:567967 original size:956 final size:956
Alignment explanation
Indices: 562451--577690 Score: 23367
Period size: 956 Copynumber: 15.9 Consensus size: 956
562441 TTTTTAGGAT
* * * * * * ** * * *
562451 TGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTTTTTTGTAATTAGGCATTGTAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * ** * *
562516 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAGGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-TTTTTTTGCACTTA
* * * * *
562581 TTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCGTAACAATC-CCT
129 TTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCC-
* * *
562644 ATTCTTTTCAAGATTGAGTCCCAAAAACACATTGCTTTCATTATGATACACAACATTGACGCTTT
192 ATTCTTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTT
* *
562709 GGTGTCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAGTGTTTGCCTCTTAAATAA
257 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * *
562774 AACAAATATTAATGGTTATACAAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
322 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
*
562839 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
387 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATT
* * * *
562904 ATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTT
452 ATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTT
*
562969 TTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTC
517 TTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
* * *
563034 ATGGAAATCTTATTTTTTTGCCCAAATTTTCCTTAAAATCAAAGTTCATCCCTACAATAAGAGAA
582 ATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAA
*
563099 GCATCGATTCTCGTAACAATCCCTATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCAT
647 GCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCAT
* *
563164 TAGGATATATGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
712 TAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
*
563229 AATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCTTATTCTTTTCGGG
777 AATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGG
* *
563294 ATTGGGCACCATAGACGTAGTCTTCTCATAAGCTTGCATGATAACGATGCTTTGGTTTCTCAAGA
842 ATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGA
*
563359 AGGGCTTTCTTCTGACCGATTATTATAAAAGTATATGTTCGTGCCTCAAA
907 AGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* *
563409 TGACCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * *
563474 ATCCTCTTTAGGATAAATGATATTGATGATTTTCCTTCCTTTGAAATCTTTTTGTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
* *
563539 TTCCTATAAATGAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* *
563604 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACGATATTGATGCTTTGGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
* *
563669 TCGCAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAGCA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* *
563734 AATGTTAATGGTCATACTAATCCCCATTCATTTCAGGATTGGGCACCATAAACGTAGTCTTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
563799 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
563864 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
* * * *
563929 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTCCTCG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
* *
563994 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAACGTTAATCCCTACAATAAGACAAGCAT
586 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
564059 CGATTCTCGTAACAATCCCC--TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
651 CGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
*
564122 ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
716 ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * *
564187 AATGTTTTCCTCTAAAATAAAACGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATT
781 AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-GATT
* *
564251 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAG
845 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGG
* * * *
564316 ACTTTTTTCTGACCAATTATTATAAAAATCTATGTTCGTGCCTCAAA
910 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * *
564363 TGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTTGTTTTGTGATTAAGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* *
564428 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTCTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
*
564493 TTCCTTTAAATCAAAGTTCATCTCC-TAAATAAGAAAAGCATTGACTCCCGTAACAATCTCCATT
131 TTCCTTTAAATCAAAGTTCATC-CCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATT
* * * *
564557 CTTTTCAAGATTGAGTCCTAAAAACACATTGCTTTCATTATGATACACAACATTGATGCTATGGT
195 CTTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGT
* *
564622 GTCGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTCGCCTCTTAAATAAAAC
260 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAAC
**
564686 AAATGTTAATGGTCATACTAATCCCCATTCTTTTCGATATTGGGCACCATAAACGTAGTCTTCTC
325 AAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTC
*
564751 ATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTATA
390 ATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATA
* * * * * *
564816 AAAATCTATGTTCGTGCCACATATAAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTG
455 AAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTG
*
564881 TAATTAGGCAATGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
520 TAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* *
564946 GAAATCTTATTTTTTTGCCCAAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGAGAAGCA
585 GAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCA
* *
565011 TCGATACTCGTAACAATCCCCATTTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
650 TCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
* * * * * **
565076 GATAAATGACATTTACGTGTTAGAGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
715 GATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
565141 CAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATT
780 CAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATT
*
565206 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGG
845 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGG
565271 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
910 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
*
565318 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
565383 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
*
565448 TTTCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* *
565513 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACGATATTGATGCTTTGGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
*
565578 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAGCA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* * *
565643 AATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTATTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
*
565708 TAAGGTTGCAAGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
565773 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
* * * *
565838 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTCCTCG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
* *
565903 AAATCTTATTTTTTTGCCCTGATTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCAT
586 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
*
565968 CGATTCTCGTAACAATCCCC--TCTTTTCAAGATTGAGACCCAAAAACACATTCTGTTCATTAGG
651 CGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
* *
566031 ATACACGACATTGACGCATTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
716 ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * *
566096 AATGTTTTCCTCTAAAATAAAACGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGATT
781 AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-GATT
* *
566160 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAG
845 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGG
* * * *
566225 ACTTTTTTCTGACCAATTATTATAAAAATCTATGTTCGTGCCTCAAA
910 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * *
566272 TGAGCCAAACAAGGATTCCAGTATTGTTCTTTATTTGTTTTGTGATTAAGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* *
566337 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTCTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
*
566402 TTCCTTTAAATCAAAGTTCATCTCC-TAAATAAGAAAAGCATTGACTCCCGTAACAATCTCCATT
131 TTCCTTTAAATCAAAGTTCATC-CCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATT
* * * *
566466 CTTTTCAAGATTGAGTCCTAAAAACACATTGCTTTCATTATGATACACAACATTGATGCTATGGT
195 CTTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGT
* *
566531 GTCGCAAGAAAAGCTTTT-TTTCTACCGTTTTTGATAGAATCAATGTTCGCCTCTTAAATAAAAC
260 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAAC
**
566595 AAATGTTAATGGTCATACTAATCCCCATTCTTTTCGATATTGGGCACCATAAACGTAGTCTTCTC
325 AAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTC
*
566660 ATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTATA
390 ATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATA
* * * * * *
566725 AAAATCTATGTTCGTGCCACATATAAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTG
455 AAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTG
*
566790 TAATTAGGCAATGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
520 TAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATG
* *
566855 GAAATCTTATTTTTTTGCCCAAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGAGAAGCA
585 GAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCA
* *
566920 TCGATACTCGTAACAATCCCCATTTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
650 TCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
* * * * * **
566985 GATAAATGACATTTACGTGTTAGAGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
715 GATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
*
567050 CAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATG
780 CAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATT
*
567115 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGG
845 GGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGG
567180 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
910 GCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
*
567227 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
567292 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
567357 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* *
567422 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACGATATTGATGCTTTGGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
567487 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* * *
567552 AATGTTAATTGTCATACTAATCCCCATTGTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
567617 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
* * * *
567682 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
*
567747 AATTAGGCAATGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
567812 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
586 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
* * *
567877 CGATACTCGTAACAATCCCCATTTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGA
651 CGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
* * * * * *
567942 ATAAATGACATTGACGTGCTAGAGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
716 ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
568007 AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTG
781 AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTG
* *
568072 GGCACCAAAGACGTAGTCTTCTCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGG
846 GGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGGG
*
568137 CTTTCTTCTGATCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
911 CTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
*
568183 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCAATATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
568248 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
*
568313 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCTATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* * *
568378 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACGATATTGATGCTTTTGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
*
568443 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTACCTCTTAAATAAAACA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* * *
568508 AATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTATTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
568573 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
568638 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
*
568703 AATTAGGCATTGTAAACACATTATCCTCATTATGATAAATGATATTGATGATTTTCTTTTCATGG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
* *
568768 AAATCTTTTTTTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGC
586 AAATC--TTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGC
568833 ATCGATTCTCGTAACAATCCCC-TCTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATT
649 ATCGATTCTCGTAACAATCCCCAT-TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATT
568897 AGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
713 AGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
* *
568962 GTCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCAGGA
778 ATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGA
* *
569027 TTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGTATGATAACGATGCTTTGGTTTCTCAAGAA
843 TTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAA
*
569092 GGGCTTTCTTCTGATCGATTATTATAAAAGTCTATGTT--TGCCTCAAA
908 GGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* *
569139 TGAGCCAAACAAGGGTTCCAGTATTGTTCTTCTTTCGTTTTGTGATTAGGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
*
569204 ATCCTTTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTCTGTTTTGCACTT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-TTT-T-TTTTGCACTT
569269 ATTTTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
128 ATTTTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
* * *
569334 TTCTTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCAATATGATACACAACATTGATGCTTTG
193 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTG
569399 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
258 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAA
* *
569464 ACAAATGTTAATGGTCGTACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTCC
323 ACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTC
* *
569529 TAATAAGGTTGCTTGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
388 TCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTA
* *
569594 TAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGAATATTCTACATTCGTTT
453 TAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTT
* *
569659 TCTAATTAGGCATTGTAAACACATTATCCTCATTATGATAAATGATATTGAT-ATTTTCTTTTCA
518 TGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCA
**
569723 TGGAAATCTT-TTTTTTTGCCCT-ATTTTCCTTTGAATGAAAGTTCATCCCTACAATAAGACAAG
583 TGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAG
* * * *
569786 CATCGATTCTCGTAACAGTCTCCACTATTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATT
648 CATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATT
* * *
569851 AGGATACACGACATTGATGCGTTGAAGTCGCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGA
713 AGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
* * *
569916 ATCAATGTTTGCCTCTATAATAAAATAAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAG
778 ATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-G
*
569980 ATTGGGCACCATAGACGTAGTGTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGA
842 ATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGA
570045 AGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
907 AGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* ** * *
570095 TGAGCCAAACAAGGACTCCAGTATTGTTCTTTTTTCGTTTTCTGATTAGGTACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * * * * *
570160 ATCCTCATTAGGATAAATGATATTGATGAGTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-TTTTTTTGCACTTA
* * * * * * * *
570225 TTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCATTACAATCCCCA
129 TTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
* * * * * *
570289 TTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATAAATGACATTGACGCGTT
193 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGC-CTTCATTATGATACACGACATTGATGCTTT
* * * **
570353 GGAGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAATGTCTGCCTCTTCCATAA
257 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* *
570418 AACAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATACACGTAGTCTT
322 AACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTT
*
570483 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATT
387 CTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATT
*
570548 ATAAAAGTCTATGTTCGTGCCACATTTGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTT
452 ATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTT
* *
570613 TTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAACGATTTTGATGATTTTCTTTTC
517 TTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
** *
570678 ATGGAAATCTTATTTTTTTGCCCTGGTTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAA
582 ATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAA
* *
570743 GCATCGATTCTCGTAACAATCTCC--TCTTTTCAAGATTGAGAACCAAAAACACATTCTCTTCAT
647 GCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCAT
*
570806 TAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAG
712 TAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* ** *
570871 AATCAATGTTTTCCTCTAAAATAAAATGAATATTAATGGTCATACTAATCCCTATTGTTTT-GGA
777 AATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-
* *
570935 GATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATAATGCTTTGGTTTCTTAAG
841 GATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAG
571000 AAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
906 AAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * *
571051 TGAGCTAAACAAGGATTCCAGTATTGTTCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* *
571116 ATCCTCTTTAGGATAAGTGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTCTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
* *
571181 TTCCTTTAAATCAAAGTTCATCCCCTAAATAAGAAAAGCATTGACTCCCGTAACAATCTCCATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* * *
571246 TTCTCAAGATTGAGTCCCAAAAACACATTGCTTTCATTATGATACACAACATTGATGCTTTGGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
*
571311 TCGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
571376 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
*
571441 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
* * * * *
571506 AAATCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGATTGCTCTACTTTTGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
* *
571571 AATTAGGCAATGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGA
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
571636 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
586 AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
*
571701 CGATTCTCGTAACAATCCCCATTTTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
651 CGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
* * ** *
571766 ATAAATGACATTGACTTGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATC
716 ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * **
571831 AATGTTTGCCTCTAAAATAAAACAAATAATAATGGTCACACTAATCCCTATTCTTTTCAAGATTG
781 AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTG
*
571896 GGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAACGATGCTTTGGTTTCTCAAGAAGGG
846 GGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGGG
571961 CTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
911 CTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * *
572007 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCATTTTTTGATTAGGCAATATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
572072 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
*
572137 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCTATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* * * *
572202 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCTTTATGATACACAACATTGACGCTTTGGTG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
572267 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* *
572332 AATGTTAATTGTCATACTAATCCCCATTCTTTTCAGGATTGGGCACCATAAACGTAGTCTTCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
*
572397 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
*
572462 AA--CTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTCTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
* **
572525 AATTAGGTATTGTAAACACATTATCCTCATTATAATAAATGATATTGATGATTTTCTTTTCATGG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
* *
572590 AAATCTTTTTTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTAATCCCTACAATAAGACAAGCA
586 AAATC-TTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCA
572655 TCGATTCTCGTAACAATCCCC-TCTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTA
650 TCGATTCTCGTAACAATCCCCAT-TCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTA
* *
572719 GGATACACGACATTGACACGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAG
714 GGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
**
572784 TCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTTAGGAT
779 TCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGAT
* * *
572849 TGGGCACCATAGACGTAGTCTTCTCCTAAGGTTGTATGATAACGATGCTTTGGTTTCTCAAGAAG
844 TGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAG
572914 GGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTT--TGCCTCAAA
909 GGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
*
572960 TGAGCCAAACAAGGGTTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * *
573025 ATCCTCTTTGGGATAATTGATAATGATGATTTTCTTTCCATTGAAAT-TTTTTTTTGCACTTATT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
573089 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
131 TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
* * * *
573154 TTTTCAAGATTGGGTCCCAAAAACACATTGCCTTCATTATGATACACAACATTGACGCTTTGGAG
196 TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
* *
573219 TCGCAAGAAAAGCTTTTCTTTCCAGCGTTTTTGATAGAATCAATGTTTGCCTTTTAAATAAAACA
261 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
* *
573284 AATGTTAATGGCCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTCCTCA
326 AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
573349 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
391 TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
* *
573414 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGAATATTCTACATTCGTTTTGT
456 AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
* * *
573479 AATTAGGCATTGTAAACACATTATCCTCATTATGATAAATGATATTGACGTTTTTCTTTTCATGG
521 AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
*
573544 AAATCTGT-TTTTTTTGCCCT-ATTTTCCTTAGAATGAAAGTTCATCCCTACAATAAGACAAGCA
586 AAATCT-TATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCA
* * * * *
573607 TCGATTCTCATAACACTCTCCACTATTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
650 TCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAG
* * *
573672 GATACATGACATTGATGCGTTGAAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
715 GATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* *
573737 CAATGTTTGCCTCTATAATAAAACAAATATTAATGGTCATACTAATCCCTATTGTTTT-GGAGAT
780 CAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGG-GAT
* *
573801 TGGGCACCATAGACGTAGTGTTCTCATAGGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAG
844 TGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAG
573866 GGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
909 GGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * * ** *
573914 TAAACCAAACAAGGACTCCAGTATTGTTCTTTTTTCGTTTTCTGATTAGGCACTATAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * * * *
573979 ATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-TTTTTTTGCACTTA
* * * * * * *
574044 TTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCATAACAATCCCCA
129 TTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
* * * * * * *
574108 TTCTTTTCAACATTGAGACCCAAAAACACATT-CTCTTCATTAGGATAAATGACATTGACGCGTT
193 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGC-CTTCATTATGATACACGACATTGATGCTTT
** * *
574172 GAAGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAATGTTTGCCTCTTACATAA
257 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
*
574237 AACAAATGTTAATGGTCATACTAAT-CCCATTCATTTT-GGGATTGGGCACCATACACGTAGTCT
322 AACAAATGTTAATGGTCATACTAATCCCCATTC-TTTTCGGGATTGGGCACCATAAACGTAGTCT
* *
574300 TCTCATAAGGTTGCATGATAATGATGCTTCGGTTTCTTAAGAAAGACTTTTTTCTGACCAATTAT
386 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTAT
574365 TATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGT
451 TATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGT
574430 TTTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
516 TTTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
574495 CATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACA
581 CATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACA
* * * *
574560 AGCATCGATTCTCATAACAAAT-CCCATTCTTTTCAAGATTGATACCGAAAAACACTTTCTCTTC
646 AGCATCGATTCTCGTAAC-AATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTC
* * *
574624 ATTAGGATAAATGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGGTTTTGAT
710 ATTAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * *
574689 AGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTAATGGTCATACTAATCCCCATTCCTTTCG
775 AGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCG
* * *
574754 GGATTGGGCACCATAAACATAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAA
840 GGATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAA
* * * ** ** * *
574819 GAAAGACTTTTTTCAAACAAATTATTATAAAAGTCTATGTTCGTGCCACATA
905 GAAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * * * * * * * ** *
574871 TGAGCAAAACAAGGATTCTAGGACTGCTCTACATTTGTTTTGTAATTAGGCGTTGTAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * *
574936 ATCCTCATTATGATAAATGATATTGATGATTTTCATTT-CATGGAAATCTTATTTTTTTGTC-CT
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTC-TTTCCATTGAAATC-T-TTTTTTTG-CACT
* * * * * * * *
574999 AATTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGACAAGCATCGATTCTCATAACAATCCC
127 TATTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTC
* * * * * *
575063 CATTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCTTCATTAGGATAAATGACATTGACGCG
191 CATTCTTTTCAAGATTGAGTCCCAAAAACACATTGC-CTTCATTATGATACACGACATTGATGCT
* *
575127 TTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATGTTTGCCTCTTAAAT
255 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAAT
*
575192 AAAACAAATGTTAATGGTCATACTAATCCCCATTCCTTTCGGGATTGGGCACCATAAACGTAGTC
320 AAAACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTC
*
575257 TTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCAACCAATTA
385 TTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTA
* *
575322 TTATAAAAGTCTATGTTCATGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTTG
450 TTATAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCG
* *
575387 TTTTGTAATTAGGCATTTTAAACACATTATCCTCATTAGGATAAATGATATTGATGTTTTTCTTT
515 TTTTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTT
*
575452 TCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTATAATAAGAC
580 TCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGAC
* *
575517 AAGCATCGATTCTCATAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACGTTCTCTTC
645 AAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTC
* * * *
575582 ATTAGGATAAATGACATTGACGCGTTGGAGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
710 ATTAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * *
575647 AGAATCAATGTTTGCCTCTTAAATAAAACAAATGTTAATGGTCATACTAATCCCCATTCCTTTCG
775 AGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCG
* *
575712 GGATTGGGCACCATAAACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAA
840 GGATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAA
* * * ** * * * *
575777 GAAAGACTTTTTTCCAACCAATTATTATAAAAGTCTATGTTCATGCCACATA
905 GAAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * * * * * * * *
575829 TGAGCAAAACAAGGATTCTAGGACTGTTCTACATTTGTTTTGTAATTAGGCATTTTAAACACATT
1 TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
* * * * * * *
575894 ATCCTCATTAGGATAAATGATATTGATGTTTTTTTTTTCATGGAAATCTTATTTTTTTGCCCTAA
66 ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATC-T-TTTTTTTGCACTTA
* * * * * * * *
575959 TTTTCCTTAAAATGAAAGTTCATCCC-TATAATAAGACAAGCATCGATTATCATAACAATCCCCA
129 TTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGAAAAGCATTGACTCTCGTAACAATCTCCA
* * * * * * * * *
576023 TTCTTTTCAAGATTGAGACCCCAAAACACGTT-CTCTTTATTAGGATAAAAGACATTGACGCGTT
193 TTCTTTTCAAGATTGAGTCCCAAAAACACATTGC-CTTCATTATGATACACGACATTGATGCTTT
* * * *
576087 GGAGTCGCAAGAAAAGCTTTT-TTTCCCACCGTTTTTGATAGAATTAATGTTTGCCTCTAAAACA
257 GGTGTCGCAAGAAAAGCTTTTCTTT-CCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATA
* * * * *
576151 AAACAAATATTAATGGTCATACTAATCCCTAATCTTTTCGGGATTGGGCACCATAGACGTAGTAT
321 AAACAAATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
* * *
576216 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCATA-AAAGGCTTTCTTCCGACCAATTA
386 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTA-AGAAAGACTTTTTTCCGACCAATTA
* * ** *
576280 TTATTAAAA-TCTATGTTCGTGCCACAAATGAGCCAAACGGGGATTCTAGTACTGTTCTACATTC
450 TTA-TAAAAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTC
*
576344 GTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTAAGATAAATGATATTGATGATTTTCTT
514 GTTTTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * * * * *
576409 TTCATAGAAATC--CTTTTTTTGCCCTAATTTTCCATAAAATCAAAGTTCGTCGCTTCAGTAAGT
579 TTCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGA
* * * * * * *
576472 CAAGCATCGATTCTCGCAACAATCTCCTTTCTTTTCAA-ACTT-AGCACCTAAAAATACGTTCCC
644 CAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGA-TTGAG-ACCCAAAAACACATTCTC
* * * * * *
576535 TTCATTAGGATACACGACGTTGATGCTTTGGCA-TCACAAGACAAGCTTTTCTTTCCACCATTTT
707 TTCATTAGGATACACGACATTGACGCGTTGG-AGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * * * * * * *
576599 TGACAGAATCAAAGTTTACCTCTTAAGTAAGACAAACATGAATGGTCATACTAATTCCCT-TTCT
771 TGATAGAATCAATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAA-TCCCTATTCT
* ** * * * * * * * *
576663 TTCCCAGATTAGGCACCATCATAAGCATAGTCTTCTCATAAGGATGTATTATATTGATGCTTCGG
835 TTTCGGGATTGGGCACCAT-A-GA-CGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGG
** * * * *
576728 TTTCTCAAGAAAAGCTTTATTCTGACCAATTATTATAAAA-TCTAAGTTCATGCCTCAAA
897 TTTCTCAAGAAGGGCTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
* * * * * * *
576787 TGAGCCAAACATGGATTCTAGTGTTGATT-ATCATTCATTTTGTTATTAGGCACTAAAAACACAT
1 TGAGCCAAACAAGGATTCCAGTATTG-TTCTTCATTCGTTTTGTGATTAGGCACTATAAACACAT
* * * * * *** *
576851 TCTCCTCATTGGGATAAATGATATTGATGATTTTCTTTAC-TTGGAAATGTTTTCCATG-ACCTA
65 TATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATT-GAAATCTTTTTTTTGCACTTA
* * * ** * * * * *
576914 TTTTTCTTAAAATCAAAGTTCATCCCTTTAATTCGACAA-CTATCGATTCTTGTAAAAATCTCCA
129 TTTTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGC-ATTGACTCTCGTAACAATCTCCA
* * * * * * * ** *
576978 CTCTTTTCAAGATTGGGAT-CCAAAAACACTTTCCCATCTTTAGGATACTTGACATTGATGCTCT
193 TTCTTTTCAAGATTGAG-TCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTT
* * * * * *
577042 GGTGTCGCTAGAAAAGATTTTCTTTCCACTGTTTTTCATAAAATCAAAGTTTGCCTCTTAAATAA
257 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAA
* * * * * * ** * *
577107 GACAAACCG-GAATGGTTATACTAATCCCCATTCTTTTCGGGAATAGGTGCCATAAATGAAGTCT
322 AACAAA-TGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCT
* * * * * * * *
577171 TCTTATAAGGATGCATGATAATGATGCTTTGGTTTCTCAAGAAGGGCTTTCTTCTGACCGATTAT
386 TCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTAT
* * * * * * * * *
577236 TATAAAAGTCTATGTTTGCGCTC-CAAATGAGCGAAACAAGGATTCTAGTATTGTTCTTCCTTGG
451 TATAAAAGTCTATGTTCGTGC-CACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCG
* * * * *
577300 TTTCGTGATTAGGCACTATAAACACATTATCCTCTTTAGGATAAATGATATTGATGATTTTCTTT
515 TTTTGTAATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * *
577365 TCATTGAAATC-T-TTTTTTTGCACTTATTTTCCTTTAAATCAAAGTTCATCCCTTA-AATAAGA
580 TCATGGAAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCC-TACAATAAGA
* * * * * * * *
577427 AAAGCATTGACTCCCGTAACAATCTCCATTCTTTTCAACATTGGGTCCCAAAAACACATTGC-CT
644 CAAGCATCGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATT-CTCT
* * * * * *
577491 TCATTATGATACACAACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTG
708 TCATTAGGATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * *
577556 ATAGAATCAATGTTTGCCTCCT-AAATAAAACAAATGTTAATTGTCATACTAATCCCCATTCTTT
773 ATAGAATCAATGTTTGCCT-CTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTT
* *
577620 TCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGCTTTGGTTTCT
837 TCGGGATTGGGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCT
*
577685 TAAGAA
902 CAAGAA
577691 AGACTTTTTT
Statistics
Matches: 13258, Mismatches: 932, Indels: 190
0.92 0.06 0.01
Matches are distributed among these distances:
951 1 0.00
952 695 0.05
953 867 0.07
954 2239 0.17
955 2386 0.18
956 3930 0.30
957 883 0.07
958 1745 0.13
959 512 0.04
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (956 bp):
TGAGCCAAACAAGGATTCCAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACACATT
ATCCTCTTTAGGATAAATGATATTGATGATTTTCTTTCCATTGAAATCTTTTTTTTGCACTTATT
TTCCTTTAAATCAAAGTTCATCCCTTAAATAAGAAAAGCATTGACTCTCGTAACAATCTCCATTC
TTTTCAAGATTGAGTCCCAAAAACACATTGCCTTCATTATGATACACGACATTGATGCTTTGGTG
TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTGCCTCTTAAATAAAACA
AATGTTAATGGTCATACTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCA
TAAGGTTGCATGATAATGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCGACCAATTATTATAA
AAGTCTATGTTCGTGCCACATATGAGCAAAACAAGGATTCTAGGACTGTTCTACATTCGTTTTGT
AATTAGGCATTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGG
AAATCTTATTTTTTTGCCCTAATTTTCCTTAAAATGAAAGTTCATCCCTACAATAAGACAAGCAT
CGATTCTCGTAACAATCCCCATTCTTTTCAAGATTGAGACCCAAAAACACATTCTCTTCATTAGG
ATACACGACATTGACGCGTTGGAGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
AATGTTTGCCTCTAAAATAAAACAAATATTAATGGTCATACTAATCCCTATTCTTTTCGGGATTG
GGCACCATAGACGTAGTCTTCTCATAAGGTTGCATGATAATGATGCTTTGGTTTCTCAAGAAGGG
CTTTCTTCTGACCGATTATTATAAAAGTCTATGTTCGTGCCTCAAA
Found at i:578054 original size:362 final size:362
Alignment explanation
Indices: 577346--578392 Score: 1485
Period size: 362 Copynumber: 2.9 Consensus size: 362
577336 TAGGATAAAT
* * * * * * *
577346 GATATTGATGATTTTCTTTTCATTGAAATCTTTTT-TTTGCACTTATTTTCCTTTAAATCAAAGT
1 GATATTGATGATTTTCTTTACATGGAAATGTTTTTCGTT-C-CCTATTTTCCTTAAAATGAAAGT
* * ** * * * * **
577410 TCATCCCTTAAATAAGAAAAGCATTGACTCCCGTAACAATCTCCATTCTTTTCAACATTGGGTCC
64 TCATCCCTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAAC
* * * * * ** *
577475 CAAAAACACATTGCCTTCATTATGATACACAACATTGACGCTTTGGTGTCACAAGAAAAGCTTTT
129 CAAAAACACTTTTCCATCTTTAGGATACTTAACATTGACGCTCTGGTGTCACAAGAAAAGCTTTT
* * * * *
577540 CTTTCCACTGTTTTTGATAGAATCAATGTTTGCCTCCTAAATAAAACAAA-TGTTAATTGTCATA
194 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACT-TGAATGGTCATA
* *
577604 CTAATCCCCATTCTTTTCGGGATTGGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAA
258 CTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCATGATAA
577669 TGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCTTGAAA
323 TGATGCTTTGGTTTCTTAAGAAAGACTTTTTTCCTTGAAA
577709 GATATTGATGATTTTCTTTACATGGAAATGTTTTTCGTTCCCTATTTTCCTTAAAATGAAAGTTC
1 GATATTGATGATTTTCTTTACATGGAAATGTTTTTCGTTCCCTATTTTCCTTAAAATGAAAGTTC
* *
577774 ATCCCTTGAGTAAGGCAACCATCGATTCTTGTAACAATCTCCAATCTTTTCAACATTGGGAACCA
66 ATCCCTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAACCA
* *
577839 AAAACACTTTTCCATCTTTAGGATACTTGACATTGAGGCTCTGGTGTCACAAGAAAAGCTTTTCT
131 AAAACACTTTTCCATCTTTAGGATACTTAACATTGACGCTCTGGTGTCACAAGAAAAGCTTTTCT
* * *
577904 TTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTGAATGGCCATACTA
196 TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTTGAATGGTCATACTA
*
577969 ATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAAGCATGATAATGA
261 ATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCATGATAATGA
578034 TGCTTTGGTTTCTTAAGAAAGACTTTTTTCCTTGAAA
326 TGCTTTGGTTTCTTAAGAAAGACTTTTTTCCTTGAAA
* *
578071 GATATTGATGA--TT-TTTACATGGAAATGTTTTCCGTGCCCTATTTTCCTTAAAATGAAAGTTC
1 GATATTGATGATTTTCTTTACATGGAAATGTTTTTCGTTCCCTATTTTCCTTAAAATGAAAGTTC
*
578133 ATCCTTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAACCA
66 ATCCCTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAACCA
* * * * *
578198 AAAACACTTTTCCATCTTTAGGATACTTTACATTGATGCTCTGGTGTCGCTAGAAAAGCTTTTCA
131 AAAACACTTTTCCATCTTTAGGATACTTAACATTGACGCTCTGGTGTCACAAGAAAAGCTTTTCT
* * * * * *
578263 TTCCACCGTTTTTGAGAGAATCAAATTTTTCCTCCGAAATACGACAAACATGAATGGTCATACTA
196 TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTTGAATGGTCATACTA
* * * * *
578328 ATCCTCATTCTTTTCAGGAATAGGCACCATAAATGA-AGTCCTCTCATAAGGATGCATGATAATG
261 ATCCCCATTCTTTTCGGGATTAGGCACCATAAA-CATAGTCTTCTCATAAGGATGCATGATAATG
578392 A
325 A
578393 CGTTTTGATT
Statistics
Matches: 616, Mismatches: 65, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
359 282 0.46
360 3 0.00
362 295 0.48
363 34 0.06
364 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (362 bp):
GATATTGATGATTTTCTTTACATGGAAATGTTTTTCGTTCCCTATTTTCCTTAAAATGAAAGTTC
ATCCCTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAACCA
AAAACACTTTTCCATCTTTAGGATACTTAACATTGACGCTCTGGTGTCACAAGAAAAGCTTTTCT
TTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCCTAAATAAGACAAACTTGAATGGTCATACTA
ATCCCCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCATGATAATGA
TGCTTTGGTTTCTTAAGAAAGACTTTTTTCCTTGAAA
Found at i:579390 original size:471 final size:473
Alignment explanation
Indices: 578071--580505 Score: 2669
Period size: 471 Copynumber: 5.2 Consensus size: 473
578061 TTCCTTGAAA
* * * ** *
578071 GATATTGATGA--TT-TTTACATGGAAATGTTTTCCGTGCCCTATTTTCCTTAAAATGAAAGTTC
1 GATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * * *
578133 ATCCTTTGAGTAAGGCAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAACCA
66 ATCCATTAAATAAGACAA-CATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCA
* * * *** * * *
578198 AAAACACTTTTCCATCTTTAGGATACTTTACATTGATGCTCTGGTGTCGCTAGAAAAGCTTTTCA
130 AAAACACATTTCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * ** *
578263 TTCCACCGTTTTTGAGAGAATCAAATTTTTCCTCCGAAATACGACAAACATGAATGGTCATACTA
195 TTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTA
* * * * * * *
578328 ATCCTCATTCTTTTCAGGAATAGGCACCATAAATGAAGTCCTCTCATAAGGATGCATGATAATGA
260 ATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTGA
* * * ** *** * * *
578393 CGTTTTGATTTCACCGGCTGGGCTTTCTTTCGACCAACTGTTATAAAAGTCTAAGTTCGTGCC-T
325 CGCTTTGGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTAT-AAAGTCTAAGTTCATGCCTT
* * *
578457 CAAATGAGCCAAACAACGATTCCAATATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACA
389 CAAA-GAGCCAAACAA-GATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACA
578522 CATTATCCTCATTAGGATAAAT
452 CATTATCCTCATTAGGATAAAT
* * *
578544 GATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTTGCACTTATTTTCCTTTAAATCAAAGT
1 GATATTGATGATTTTCTTTTCATTGAAATC-TTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGT
* * * * ** * * *
578609 TTAACCCTTAAATAAGAAAAACATTGACTCTCATAACAATCTCCATTCTTTTCAAGATTAGGTCC
64 TCATCCATTAAATAAG-ACAACATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACC
* * * * * * *
578674 CAAAAACACGTTGCCTTCCTTATGATACACAACATTGAGGCTCTGGTGTCGCAAGAAAAGCTTTT
128 CAAAAACACATTTCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * *
578739 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTTGAATGGCCATAC
193 CTTTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATAC
* * *
578804 TAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAGGAAGCATGATATT
258 TAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATT
* ** * *
578869 GATGCTTCAGTTTCTCAAGAATGGCTTTC-TTCAGACCAATTATAATAAAGTCTAAGTTCATGCC
323 GACGCTTTGGTTTCTCAAGAAAGGCTTTCTTTC-GACCAATTATTATAAAGTCTAAGTTCATGCC
* * *
578933 TTGAAAGAGCCAAACAAGGATTCCAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
387 TTCAAAGAGCCAAACAA-GATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAAC
*
578998 ACACTATCCTCATTAGGATAAAT
451 ACATTATCCTCATTAGGATAAAT
* * *
579021 GATATTGATGATTTTCTTTTTATTAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAAGTT
1 GATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTT
* * * * * * *
579086 TATCCATTAAAAAAGA-AA-AGC-ATTCTCGTAACGATCTCCATTCCTATCAAGATTGGGACCCA
65 CATCCATTAAATAAGACAACATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCA
* * *
579148 AAAACACATTTCCTTCATTAGGATACACGACATTAATGCTTTGGTGCCGCAAGATAAGCTTTTCT
130 AAAACACATTTCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * *
579213 TTCCACCATTTTTG-TAGATTCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTA
195 TTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTA
* * * * * *
579277 ATCCCCATTCTTTCCGGGAATAGGCACCGTAAACGTTGTCTTCTCCTAAGGATACATGATATTGA
260 ATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTGA
* * **
579342 CACTTTGGTTTCTCAAGCAAGGCTTTCTTTCGACCAATTATTATAAAGTCTATCTTCATGCC-TC
325 CGCTTTGGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTATAAAGTCTAAGTTCATGCCTTC
* * * * *
579406 AAATGAGCCAAACATGGATTCTTGTATTGTTCTTCATTCATTTTGAGATTAGGAACTATAAACAT
390 AAA-GAGCCAAACA-AGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* **
579471 ATTATCCTCATAAGGATCTAT
453 ATTATCCTCATTAGGATAAAT
* * *
579492 GATATTAATGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTTATTTCCCTTAAAATCAAAGTT
1 GATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTT
* *
579557 CATCCATTAAATAAGACAACCATCGATTCTCG-AAGCAATCCCCATTCTTTTCAAGATTAGGACC
65 CATCCATTAAATAAGACAA-CATCAATTCTCGTAA-CAATCTCCATTCTTTTCAAGATTAGGACC
* * * *
579621 CAAAAACACATTCCCTTCATTAGGGTACACGACGTTGATGCTTTGGTGTCGCAAGACAAGCTTTT
128 CAAAAACACATTTCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * *
579686 TTTTCTACCGTTTTTCATAGAATCAAAGTTTACCACTTTACTAAGAGAAACATGAATGGTCATAC
193 CTTTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATAC
* *
579751 TAATCCCCATTCTTTTCGGGATTAGGCACCATCATAAACATAGTCTTCTCATAAGGATGTATGAT
258 TAATCCCCATTCTTTTCGGGATTAGGCA-C--CATAAACGTAGTCTTCTCATAAGGATGCATGAT
** ** * * *
579816 ATTGATTCTTCAGTTTCTCAAGAAATGCTTTCTTTTGACCAATTGTTATAAAGTCTAAGTTCATG
320 ATTGACGCTTTGGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTATAAAGTCTAAGTTCATG
* * * * *
579881 CC-TCTAATGAGCCAAACATAGATTCTAGTATTGATCATCATTAATTTTGTTATTAGGCACTA-A
385 CCTTC-AAAGAGCCAAACA-AGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATA
* *
579944 AAGCACATTCTCCTTATTAGGATAAAAT
448 AA-CACATTATCCTCATTAGGAT-AAAT
*
579972 -ATATTGATGA--------T--TT----TC----C-TTGCCCTCTTTTCCTT-AAATCAAAGTTC
1 GATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * *
580016 ATCCCTTGAATAAGATAACCATCAATTCTCGTAACAATCTCCACTCTTTTC-AGGTTAGGAACCA
66 ATCCATTAAATAAGACAA-CATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCA
* * * * *
580080 AAAACAC-TCTCCTATCTTTAGGATACTCGACATTGATGCTCTAGG-GTAGCAAGAAAAGCTTTT
130 AAAACACATTTCCT-TCATTAGGATACACGACATTGATGCT-TTGGTGTCGCAAGAAAAGCTTTT
* ** * *
580143 ATTTCCACAATTTTTGATAGAATCAAAGTTTACCTCTTAAATTAGACAAACATGAATGGTTATAC
193 CTTTCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATAC
* * *
580208 TAATCCCCATTCATTTCGAGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAAT
258 TAATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATT
* * * * * * *
580273 GACGCTTTGGTTTCTCAAGAAATGCTTTCTTCCAACCATTTACTATAAAAGTCTATGTTCGTGCC
323 GACGCTTTGGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTAT-AAAGTCTAAGTTCATGCC
* * *
580338 TTAAAAGAGCCAAACAAGATTCTAGTATTGTTCTTCACTCATTTTGTGATTAGGCAATATAAACA
387 TTCAAAGAGCCAAACAAGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACA
580403 CATTATCCTCATTAGGATAAAT
452 CATTATCCTCATTAGGATAAAT
* * * * *
580425 GGTATTGATGATTTTCTCTTCATTGAAATCTATTT-TTTGCACTTATTTTCCTTTAAATCAAACT
1 GATATTGATGATTTTCTTTTCATTGAAATCT-TTTCTTTGC-CCTATTTTCCTTAAAATCAAAGT
* *
580489 TCATCCCTTAATTAAGA
64 TCATCCATTAAATAAGA
580506 TTGGGACCCA
Statistics
Matches: 1645, Mismatches: 263, Indels: 106
0.82 0.13 0.05
Matches are distributed among these distances:
453 4 0.00
454 133 0.08
455 31 0.02
456 6 0.00
457 136 0.08
458 57 0.03
459 10 0.01
460 6 0.00
461 1 0.00
462 1 0.00
464 2 0.00
465 2 0.00
468 2 0.00
469 1 0.00
470 4 0.00
471 281 0.17
472 121 0.07
473 16 0.01
474 16 0.01
475 144 0.09
476 106 0.06
477 133 0.08
478 269 0.16
479 159 0.10
480 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (473 bp):
GATATTGATGATTTTCTTTTCATTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
ATCCATTAAATAAGACAACATCAATTCTCGTAACAATCTCCATTCTTTTCAAGATTAGGACCCAA
AAACACATTTCCTTCATTAGGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCGTTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATGGTCATACTAA
TCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATATTGAC
GCTTTGGTTTCTCAAGAAAGGCTTTCTTTCGACCAATTATTATAAAGTCTAAGTTCATGCCTTCA
AAGAGCCAAACAAGATTCTAGTATTGTTCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
ATCCTCATTAGGATAAAT
Found at i:581573 original size:477 final size:474
Alignment explanation
Indices: 580502--583984 Score: 2835
Period size: 477 Copynumber: 7.4 Consensus size: 474
580492 TCCCTTAATT
* * * ** * *
580502 AAGATTGGGACCCAAAAGCACATTACCTTC-TCAAGGATGCACAACATTAATGCTTTGGTGTCGC
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCAT-TAGGATATACAACATTGATGCTTTAGTGTCGC
* *
580566 AAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAGCA
64 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* *
580631 TGAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCATCTCATAAA
129 TGAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
580696 GAAGCATGATATTGATGCTTCAGTCTCTTAAGAATGGCTTTCTTTAGACCAGTTATTATAAAGTG
194 GAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAGTC
* *
580761 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATC-ATCATTCATTTTGTGATT
259 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTA-CATTCATTTTGTAATT
* * * *
580825 AGGCACTGTAAACACATTATCCTCACTACGATAAATGATATCGATGATTTTCTTTTCATGAAAAT
323 AGGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAAT
* *** * * ** * * *
580890 GTTTTCCATGCCCTATTTTCCTTAAAATAAAAGTTCATCCCTCGAATAAGGCAACCATCGATTCT
388 ATTTTTTTTGCCTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCT
* *
580955 TGTAACAATCTCTATTCTTTTC
453 CGTAACAATCTCCATTCTTTTC
* * * * * ** * *
580977 AAGATTGGGAACCAAAAGCACTTTCCCATCTTTAGGATACT-TGACATTGATGCTCTAGTGTCGT
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATA-TACAACATTGATGCTTTAGTGTCGC
* *
581041 TAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGCTTGCCTCTTAAATAAGACAAACA
64 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* * ** * *
581106 TTAATGGTCATACTAATCCCCATT-TTGTTCGTGATTAGGCACCATAAATGTAATCTTCACATAA
129 TGAATGGTCATACTAATCCCCATTCTT-TTCGAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * ** * * ** *
581170 GGATGCAGGATAATGATGCTTTGGTTTCCCAAGAAAAGG-TTTCTTCCGACCAATTATTCTAAAA
193 GGAAGCATGATATTGATGCTTCAGTTTCTCAAG-AATGGCTTTCTTTAGACCAATTATTAT-AAA
* * ** * **
581234 GTCTATGTTCGTGCCTCAAATGAGCCATACAAGGATTCTAGTACCGTTCTACATTTGTTTTGTAA
256 GTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAA
* * * *
581299 TTAGGCATTGTAAACACATTATCGTCATTAGGAAAAATGATATTGATGATTTTCTTTACATGGAA
321 TTAGGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAA
* *
581364 ATATTTTTTTTGCACTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGAAAAGCATTGAC
386 ATATTTTTTTTGC-CTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGACAAGCATTGAT
*
581429 TCTCGCAACAATCTCCATTCTTTTC
450 TCTCGTAACAATCTCCATTCTTTTC
* * * * * *
581454 AAGATTGGGTCCCAAAAACAAGTTGCCTTCATTATGATATACAACATTGACGCTTTGGTGTTGCA
1 AAGATTGGGACCCAAAAACAA-TTCCCTTCATTAGGATATACAACATTGATGCTTTAGTGTCGCA
* * * * * * *
581519 AGAAAAGCCTTTCTTTCCACCATTTTCGATAGAGTCAAAGTTTGCCTTTTAAATAAGATAAACTT
65 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * **
581584 GAATGG-CTATATTAATCCCCATTCTTTTCGGGATTAGGTGCCATAAACATAGTCTTCTCATAAG
130 GAATGGTC-ATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAG
581648 GAAGCATGATATTGATGCTTCAGTTT-TCAAGAATGGCTTTCTTTAGACCAATTATTATAAAGTC
194 GAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAGTC
*
581712 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTTCATTCATTTTGTAATTA
259 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAATTA
* *
581777 GGCACTATAAACACATTATCTTCATTAGGATAAATGATATTGATGATTTTCTTTTCAT-GAAA-A
324 GGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATA
** * *
581840 TTATTTTTACCCTTATTTTCCTTTAAATCAAAGTTCATCCCCTTAAA-AAGACAAGCATTGATTA
389 TT-TTTTTTGCCTTATTTTCCTTTAAATAAAAGTTCAT-CCCTTAAATAAGACAAGCATTGATTC
* * *
581904 TCATAACAATCTACTTTCTTTTC
452 TCGTAACAATCTCCATTCTTTTC
* * * *
581927 AAGATTGGGACCCAAAAACACATTCCCTTCAGTAGGATACACGACATTGATGCCTTAGTGTCGCA
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATATACAACATTGATGCTTTAGTGTCGCA
* * * * * * *
581992 AGAAAAGATTTTATTTCCATCGTTTTTGATAGAATTAATGTTTTCCTTTTAAATAAGACAAACAT
65 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* ** ** * * * ** *
582057 GAATGGT-AAAC--AT-GTC-TTCTCAT-AAGGATGTATG-A-TATTGATGCTTCAGT-TTCTC-
130 GAATGGTCATACTAATCCCCATTCTTTTCGA-GAT-TAGGCACCA-T-AAACAT-AGTCTTCTCA
* * ** ** ** * * * * *
582112 -AA-G-A--A--A-A--GCT--TTC---TTCTGACCAAT-TATTT-TAAAGTCTAAGT-TCAT-G
190 TAAGGAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAA
* * * ** * * * *
582158 ACTC-AA-AT-GTGCC-AAACATG-G--ATTCTAGCG-TT-GA-TCA-TCAT-T-CATTCTGTTA
255 AGTCTAAGTTCGTGCCTCAA-ATGAGCCAAACAAG-GATTCTAGT-ATTGATCTACATTC-ATT-
** * * *** * ** *
582210 TTAGGCACTAGAAACACAT-TCTGCACGTTA---GGA------TAAATCATATTGATGATTTTCT
315 TT-GTAATTAG--GCAC-TGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCT
* * *** * * * * * *
582265 TTACATGGAAATGTTTTCCCTACAC-TATTTTCCTTAAAATCAAAGTTCAACTCTTGAATAAGAC
376 TTTCATGGAAATATTTTTTTTGC-CTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGAC
* *
582329 AACCATTGATTCTCGTAACAATCTCCATTCTTCTC
440 AAGCATTGATTCTCGTAACAATCTCCATTCTTTTC
* * * * *
582364 AAGATTGGG-CCCAAAAACACATTCCGTTCATTAGGATACACGACATTG-TCGCTTTGGTGTCGT
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATATACAACATTGAT-GCTTTAGTGTCGC
* *
582427 AAGAAAAGCTTTTCTTTCCAACGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
64 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* * * * * * *
582492 TGAATGGTCATACTAATCCCTAGTC-TTTCTGGGACTT-GGCACCGTAAACGTTGTCTTTTCATA
129 TGAATGGTCATACTAATCCCCATTCTTTTC-GAGA-TTAGGCACCATAAACATAGTCTTCTCATA
** ** * ** *
582555 AGGATCCATGATATTGATGCTTTGGTTTCTCGAGAATGGCTTTCTTCCGACCAATTATTATAAAC
192 AGGAAGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAG
* * *** * * * *
582620 TCTATGTTCGTGCCACAAATGAGCCAAATGTGGATTCTAGTATTGTTCTTCACTCATTTTGTGAT
257 TCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAAT
* * *
582685 TAGGCACTATAAACACATTATCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTCTTGGAAA
322 TAGGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAA
* ** * * ** * *
582750 TCCTTTTTTTAACACTAATTTTCC-TTAGAATCAAAGTTCAGGCCTTAAATAAGACAACCATCGA
387 T-ATTTTTTTTGC-CTTATTTTCCTTTA-AATAAAAGTTCATCCCTTAAATAAGACAAGCATTGA
** *
582814 TTCTCGTAGTAATCTCCATTTTTTTC
449 TTCTCGTAACAATCTCCATTCTTTTC
* * * * * * * *
582840 AAGATTGGGACACAAAAACACATTTCCTTTATTAGGATACACAACGTTGATGCTTTGGAGTCACA
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATATACAACATTGATGCTTTAGTGTCGCA
* * * * * *
582905 CGACAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAGTTTGCCTCTTAAATACGACACACGT
65 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT
* * ** ** * * *
582970 CAATGGTTATAGGAATCCTTAATCTTCTCGGGATTAGGCACCATAAACATAGTCTTCTCATAA-G
130 GAATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * *
583034 AATGCATGATACTGATGCTTCAGTTTCTCAAGAAAGGTTTTCTTCAGACCAATTATTATAAAGTC
195 AA-GCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAGTC
* * * **
583099 TAAGTTCATGCCTCAAATAAGCCAAACAAGGATTCTAGTACTGA-CT---TTCA-TTCAT-ATT-
259 TAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAATTA
* * *
583157 ---A-TG-----A-TTTATCCTCATTAGGATAAATGATATTGATGAATTTCTTTTCATGGAAATC
324 GGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATA
** *** * * * * * * * * * * *
583212 TTTTCTTTACCCTTATAAGCATTAAAATCAAATTTCTTCCCCTAATTAAAAGAAGTATCGATTCT
389 TTTT-TTTTGCCTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCT
*
583277 TGTAACAATCTCCATTC-TTTC
453 CGTAACAATCTCCATTCTTTTC
* * * * * *** * ** * **
583298 AAGATTGGGGCCCAAAAGCACATTCACTTCAATAAGATACT-TGGCCTTGGCGCTTTGGTGTCAA
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATA-TACAACATTGATGCTTTAGTGTCGC
* *
583362 AAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAACA
64 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACA
* * ** * *
583427 TGAATGGTCATACTAATCCCCATTC-TTTCTGGGACTAGGCACTGTAAACGTTGTCTTCTCATAA
129 TGAATGGTCATACTAATCCCCATTCTTTTC-GAGATTAGGCACCATAAACATAGTCTTCTCATAA
** * * ** * *
583491 GGATCCATGATATTGATGGTTTC-GTTTCTCAAGAAAGGCTTTCTTCCGACCAAATATTATAAAC
193 GGAAGCATGATATTGAT-GCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAG
* * * * * * * *
583555 TCTATGTTCATGCCTTAAATGAGCCACACAAGGATTCTAGTATTGATGTTCATTCATTATGTGAT
257 TCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAAT
* * * *
583620 TATGCACTATCAGCACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCAT-GAAA
322 TAGGCACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAA
* ** * *
583684 -ATTATTTTTGCCCTTATTTTCCTTTAAATTTTAAGTTCAT-CCTTCAAAAAAGACAACCATTGA
387 TATTTTTTTTG-CCTTATTTTCCTTTAAA-TAAAAGTTCATCCCTT-AAATAAGACAAGCATTGA
* * *
583747 TTCCCGTCACAATCTCAATTCTTTTC
449 TTCTCGTAACAATCTCCATTCTTTTC
* * * * *
583773 AAGATTGGGACCCAAAAATACATTCCCTTCATTA-GATACACGACATTG-TCGCTTTGGTGTCGT
1 AAGATTGGGACCCAAAAACA-ATTCCCTTCATTAGGATATACAACATTGAT-GCTTTAGTGTCGC
*
583836 AAAAAAAGCTTTTCTTTCCACCGATTTTT-ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAAC
64 AAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAAC
* * * * *
583900 ATGACTGGTCATACTAATCCCCAGTC-TTTCTGGGACTT-GGCACCGTAAACATTGTCTT-TCAT
128 ATGAATGGTCATACTAATCCCCATTCTTTTC-GAGA-TTAGGCACCATAAACATAGTCTTCTCAT
**
583962 AAGGATCCATGATATTGATGCTT
191 AAGGAAGCATGATATTGATGCTT
583985 TGGTTTCTAG
Statistics
Matches: 2385, Mismatches: 494, Indels: 261
0.76 0.16 0.08
Matches are distributed among these distances:
435 1 0.00
436 144 0.06
437 76 0.03
438 3 0.00
439 4 0.00
440 14 0.01
441 10 0.00
442 10 0.00
443 8 0.00
444 6 0.00
445 11 0.00
446 5 0.00
447 8 0.00
448 2 0.00
449 3 0.00
450 3 0.00
451 5 0.00
452 7 0.00
453 7 0.00
454 5 0.00
456 10 0.00
457 6 0.00
458 251 0.11
459 63 0.03
460 58 0.02
461 3 0.00
462 5 0.00
463 11 0.00
464 7 0.00
465 12 0.01
466 6 0.00
467 11 0.00
468 16 0.01
469 16 0.01
470 9 0.00
471 3 0.00
472 11 0.00
473 218 0.09
474 217 0.09
475 415 0.17
476 226 0.09
477 473 0.20
478 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
AAGATTGGGACCCAAAAACAATTCCCTTCATTAGGATATACAACATTGATGCTTTAGTGTCGCAA
GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
AATGGTCATACTAATCCCCATTCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
AGCATGATATTGATGCTTCAGTTTCTCAAGAATGGCTTTCTTTAGACCAATTATTATAAAGTCTA
AGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGATCTACATTCATTTTGTAATTAGG
CACTGTAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCATGGAAATATT
TTTTTTGCCTTATTTTCCTTTAAATAAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGT
AACAATCTCCATTCTTTTC
Found at i:582454 original size:436 final size:436
Alignment explanation
Indices: 581627--582499 Score: 1206
Period size: 436 Copynumber: 2.0 Consensus size: 436
581617 TTAGGTGCCA
**
581627 TAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTCAGTTTTCAAGAATGGCTTTCTTT
1 TAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTCAGTTTTCAAGAAAAGCTTTCTTT
* * *
581692 AGACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGAT
66 AGACCAATTATTATAAAGTCTAAGTTCATGACTCAAATGAGCCAAACAAGGATTCTAGCATTGAT
* * * * *
581757 CTTCATTCATTTTGTAATTAGGCACTATAAACACATTATCTTCATTAGGATAAATGATATTGATG
131 CATCATTCATTCTGTAATTAGGCACTAGAAACACATTATCTGCATTAGGATAAATCATATTGATG
* * * * *
581822 ATTTTCTTTTCATGAAAATTATTTTTACCCTTATTTTCCTTTAAATCAAAGTTCATCCCCTTAAA
196 ATTTTCTTTACATGAAAATTATTTCTACACTTATTTTCCTTAAAATCAAAGTTCATACCCTTAAA
* * *
581887 AAGACAAGCATTGATTATCATAACAATCTACTTTCTTTTCAAGATTGGGACCCAAAAACACATTC
261 AAGACAACCATTGATTATCATAACAATCTACATTCTTCTCAAGATTGGGACCCAAAAACACATTC
*
581952 CCTTCAGTAGGATACACGACATTGATGCCTTAGTGTCGCAAGAAAAGATTTTATTTCCATCGTTT
326 CCTTCAGTAGGATACACGACATTGATGCCTTAGTGTCGCAAGAAAAGATTTTATTTCCAACGTTT
* * * *
582017 TTGATAGAATTAATGTTTTCCTTTTAAATAAGACAAACATGAATGG
391 TTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGG
* *
582063 TAAACAT-GTCTTCTCATAAGGATGTATGATATTGATGCTTCAGTTTCTCAAGAAAAGCTTTCTT
1 TAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTCAGTTT-TCAAGAAAAGCTTTCTT
* * * *
582127 CT-GACCAATTATTTTAAAGTCTAAGTTCATGACTCAAATGTGCCAAACATGGATTCTAGCGTTG
65 -TAGACCAATTATTATAAAGTCTAAGTTCATGACTCAAATGAGCCAAACAAGGATTCTAGCATTG
*
582191 ATCATCATTCATTCTGTTATTAGGCACTAGAAACACA-T-TCTGCACGTTAGGATAAATCATATT
129 ATCATCATTCATTCTGTAATTAGGCACTAGAAACACATTATCTGCA--TTAGGATAAATCATATT
*
582254 GATGATTTTCTTTACATGGAAATGT-TTTCCCTACAC-TATTTTCCTTAAAATCAAAGTTCA-AC
192 GATGATTTTCTTTACATGAAAAT-TATTT--CTACACTTATTTTCCTTAAAATCAAAGTTCATAC
* * * * *
582316 TCTTGAATAAGACAACCATTGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGG-CCCAAAA
254 CCTT-AAAAAGACAACCATTGATTATCATAACAATCTACATTCTTCTCAAGATTGGGACCCAAAA
* * * * * * *
582380 ACACATTCCGTTCATTAGGATACACGACATTG-TCGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
318 ACACATTCCCTTCAGTAGGATACACGACATTGAT-GCCTTAGTGTCGCAAGAAAAGATTTTATTT
*
582444 CCAACGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGG
382 CCAACGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGG
582499 T
1 T
582500 CATACTAATC
Statistics
Matches: 384, Mismatches: 44, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
434 5 0.01
435 39 0.10
436 266 0.69
437 70 0.18
438 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (436 bp):
TAAACATAGTCTTCTCATAAGGAAGCATGATATTGATGCTTCAGTTTTCAAGAAAAGCTTTCTTT
AGACCAATTATTATAAAGTCTAAGTTCATGACTCAAATGAGCCAAACAAGGATTCTAGCATTGAT
CATCATTCATTCTGTAATTAGGCACTAGAAACACATTATCTGCATTAGGATAAATCATATTGATG
ATTTTCTTTACATGAAAATTATTTCTACACTTATTTTCCTTAAAATCAAAGTTCATACCCTTAAA
AAGACAACCATTGATTATCATAACAATCTACATTCTTCTCAAGATTGGGACCCAAAAACACATTC
CCTTCAGTAGGATACACGACATTGATGCCTTAGTGTCGCAAGAAAAGATTTTATTTCCAACGTTT
TTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGG
Found at i:585595 original size:13 final size:13
Alignment explanation
Indices: 585576--585614 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
585566 ACTATTTATG
585576 ATGTATCGATACA
1 ATGTATCGATACA
*
585589 CTGTATCGATACA
1 ATGTATCGATACA
*
585602 ATGTATCAATACA
1 ATGTATCGATACA
585615 TGAATAGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:587859 original size:476 final size:478
Alignment explanation
Indices: 585720--588505 Score: 3292
Period size: 476 Copynumber: 5.9 Consensus size: 478
585710 AGTTATGAAA
* * *
585720 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTCTTCCGACCAAA
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCAGACCAAT
* * * *** * * *
585785 TATTATAAACTCTATA-TTCATGCCTCAAATTAGCCAAATGTGGATTCTAGTATTGTTCTTCACT
66 TATTATAAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATT
* * * *
585849 CATTTTGTGATTAGGCACTGTAAACACATTATCCTTATTAGGATAAAAGATATTGATGATTTTCT
130 CATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * *
585914 TTTCTTGGAAATCTTTTTTTTTACCCTAATTTT-CTTAAAATC-AAAGTTCATCCCTTAAATAAG
195 TTTCATGGAAATC-TTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAG
* ** * *
585977 ACAACCATCGATTCTCATAGTAATCTCCATTTTTTTCAAGATTGGGACACAAAAACACAATT-CC
259 ACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACAC-ATTCCC
* * * * * * * * *
586041 TTCATTAGGATACACAACGTTGATGCTTTGGAGTCACAGGATAAGCTTTT-TTTTCCACCGTTTT
323 TTCATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTT
* * * * * * *
586105 TGATAGAATCAAAGTTTGCCTCTTAAATACGACACACATCAATAGTCATACGAATCCCTAATCTT
388 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTT
*
586170 TTCGGGAGTAGGCACCATAAACATAG
453 TTCGGGATTAGGCACCATAAACATAG
* ** *
586196 TCTTCTCATAAGGATGCATGATATTGATGCTTCAGTTTCTCAAGAAAGG-TTTCTTCAGACCAAT
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCAGACCAAT
* * **
586260 TATTATAAAGTCTAAGTTCCTGCCTCAAATAAGCCAAACAAGGATTCTAGTACTGATCTTCATTC
66 TATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATTC
* * * * *
586325 A-----T-ATTATG----AT-------TTATCCTTATTAGGACAAATAATATTGATGAATTTCTT
131 ATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTT
*** * *
586373 TTCATGGAAATCTTTTCTTTGCCCTTATAAGCCTTAAAATC-AAAGTTCATCCCTTAATTAAAAC
196 TTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGAC
* * * * *
586437 AAGTATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGGCCCAAAAGCACATTCACTTC
261 AAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTC
* * * * **
586502 ATTAGGATACACGGCGTTGGCGCTTTGGTGTCAAAAGAAAAGCTTTTCA-TTCCACCGTTTTTGA
326 ATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTTTGA
* * * **
586566 TAGAATCAAAGTTTGCCTCTTAAATAAGTCAAGCATGAATGGTCATACCAGCCCCCATTCTTTTC
391 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTC
**
586631 GGGATTAGGTGCCATAAACATAG
456 GGGATTAGGCACCATAAACATAG
* ** ** * *
586654 TCTTCTCATATGGAGGCATGATATTGATGC-TTCAATTTCTCAAGAATGGCTTTCTTTAGACCAA
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGA-TTCTCAAGAAAGGCTTTCTTCAGACCAA
*
586718 TTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCTAAACAAGGATTCTAGTTTTGATCTTCATT
65 TTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATT
* * *
586783 CATTTTGTGATTAGGCACTATAAACAAATTATCCTCATTTGGATAAATGATA-T--TGATTTTC-
130 CATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * * *
586844 --T--TGGAAATGTTTTCTTTGCCC-TATTTTCCTTAAAATCTAAAGTTTATCTCTTAAATAAGG
195 TTTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGA
* * * * * *
586904 TAAGCATCGATTCTCATAACAATCTCCATTCTTTTCTACATTGGGATCGAAAAACACATTCCTTT
260 CAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTT
* * *
586969 CATTAGGACACACGACATTGACGCCTTGGGGTCGCAAGAAAAGCTTTT-ATTTCCACCGTTTTTT
325 CATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTTTG
* *
587033 ATAGAATCAAAGTTTGCCTCTTAAATAAGAAAAACTTGAATGGTCATACTAATCCCCATTCTTTT
390 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTT
*
587098 CGAGATTAGGCACCATAAAACATAG
455 CGGGATTAGGCACCAT-AAACATAG
* *** * *
587123 TCTTCTCATAAGGAACCATGATATTGATGCTACAGTTTCTCAAGAATGGCTTTCTTCAGACCAAT
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCAGACCAAT
* * * *
587188 TGTTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCGAACAAGGATTCGAGTTTTGATTTTCATTC
66 TATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATTC
* * * *
587253 ATTTTGTAATTAGACACTATAAACACATTATCCTCATTAGGATAATTGATATTGACGATTTTCCT
131 ATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * *
587318 TTCATGGAAATCTTTTCTTTGCCC-TATTTTTCTTAAAATCAAAAGTTCATCACTTAAAAAAGAC
196 TTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGAC
* * * *
587382 AAGCATCGATTCTCATAATAATCTCCATTCTTTTAAAGATTGAGACCTAAAAACACATTCCCTTC
261 AAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTC
* ** * * *
587447 ATTAGGACACATAACATAGACACCTTGGTGTCGCAAGAAAAGC-TTTCATTTCCATCGTTTTTGA
326 ATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTTTGA
* * * * *
587511 TAAAATCAAAGTTTGTCTCTTAAATAAGACAAGCATTAATTGTCATACTAATCCCCATTCTTTTC
391 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTC
* * *
587576 GGGATTAGGCACCGTAAACGTTG
456 GGGATTAGGCACCATAAACATAG
* * *
587599 TCTTCTCATAAGGATCCATAATATTGATGCTTTGGATTCTCTAGAAAGGCTTTCTTCCGACCAAT
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCAGACCAAT
* * * * * * * *
587664 TACTATAAAGTCTATGTTCATGCCTCAAATGAGCCACACAAGGACTCTAGTATTGATCTTTATCC
66 TATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATTC
* * * *
587729 ATTTTGCAATTAGGCACTATCAACACATTATTCTCATTAGGATTAATGATATTGATGATTTTCTT
131 ATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * **
587794 TTCATGAAAATCTTTTTTTTGCCCTTATTTTCCTTTGAATC-AAAGTTCATCCCTTAAATAAGAC
196 TTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGAC
* * * * **
587858 AACCATCGATTCTCATAACGATCTCCATTTTTTTCAATATTAAGACCCAAAAACACATTCCCTTC
261 AAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTC
* * * * * * * *
587923 ATTAGGATACATGACATTTATGCTTTGGTGTTGTAAGAAAAGCTTTTC-TTTCCACCTTTTTTTA
326 ATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTTTGA
* * *
587987 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAATGGTCATACTAATCCCAATTGTTTAT
391 TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTT-T
588052 -GGGATTAGGCACCATAAACATAG
455 CGGGATTAGGCACCATAAACATAG
* * * * **
588075 TCTTCTCATAAGGATGCATGATAATCACGCTTTGTTTTCTCAAGAAAGGCTTTCTTTC-GACCAA
1 TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTC-TTCAGACCAA
* * * *
588139 TTATCATAAAGTCTACA-TTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTTTTGTTCTTCAT
65 TTATTATAAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCAT
* * * *
588203 TCATTTTGTGATTGGGCACTATAAACACATTATCCTCATTAGGATAAATGACATTGATGATTTTA
129 TCATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTC
** *
588268 TTTTTGTGGAAATCTTTTC-TT-CACCTTATTTTCCTTAAAATCAAAAGTACATCCCCTTAAA-A
194 TTTTCATGGAAATCTTTTCTTTGC-CCTTATTTTCCTTAAAATCAAAAGTTCAT-CCCTTAAATA
* * * * *
588330 AGACTAGCATCGATTCTTATAACAATCTACTTTCTTTTCAAGATTGGGACCCAAAAATACATTCC
257 AGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCC
* *
588395 CTTCATTAGGATACACGACATTGATGCCTTGGTGTCGCAAGAAAA-CATTTT-ATTTCCACCATT
322 CTTCATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGC-TTTTCATTTCCACCGTT
* * * *
588458 TTTGATAGAATTAATGTTTTCCTTTTAAATAAGACAAACATGAATGGT
386 TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGT
588506 AAACATAGTC
Statistics
Matches: 1965, Mismatches: 299, Indels: 92
0.83 0.13 0.04
Matches are distributed among these distances:
457 17 0.01
458 294 0.15
459 75 0.04
464 1 0.00
465 6 0.00
467 14 0.01
468 214 0.11
469 176 0.09
470 3 0.00
472 7 0.00
473 7 0.00
474 2 0.00
475 90 0.05
476 797 0.41
477 262 0.13
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (478 bp):
TCTTCTCATAAGGATCCATGATATTGATGCTTTGGATTCTCAAGAAAGGCTTTCTTCAGACCAAT
TATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTTTTGATCTTCATTC
ATTTTGTAATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTT
TTCATGGAAATCTTTTCTTTGCCCTTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGAC
AAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACACATTCCCTTC
ATTAGGATACACGACATTGACGCCTTGGTGTCGCAAGAAAAGCTTTTCATTTCCACCGTTTTTGA
TAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTC
GGGATTAGGCACCATAAACATAG
Found at i:590169 original size:317 final size:318
Alignment explanation
Indices: 589639--590215 Score: 847
Period size: 317 Copynumber: 1.8 Consensus size: 318
589629 AAATGATATT
* * * **
589639 GATGATTTTCTTTTCATTGAAATCTTTTTTTTTGCACTTATTTTCCTTTGAATCAAAGTTCATCC
1 GATGATTTTCTTTTCATGGAAATCTTTTTTTGTGCACCTATTTTCCTTAAAATCAAAGTTCATCC
* * *
589704 CTTAAATAAGACTAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGATCCAAAAC
66 CTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAC
* * * * **
589769 ATATTGCCTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
131 ACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGAAAAGCTTTTAATTCCA
* *
589834 CTGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATA-AAACAAACATGAATGGTCATACTAATCC
196 CTGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATATAAA-AAACAAGAATAGTCATACTAATCC
589898 CCATTCTTTTCGGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATGCAAGATAAA
260 CCATTCTTTTCGGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATGCAAGATAAA
* * *
589957 GATGATTTTCTTTTTATGGAAATC-TTTTTTGTGC-CCTATTTTTCTTAAAATCAAAGTTTATCC
1 GATGATTTTCTTTTCATGGAAATCTTTTTTTGTGCACCTATTTTCCTTAAAATCAAAGTTCATCC
* * * *
590020 TTTCAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
66 CTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGACCC-AAAA
*
590085 CACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTAATTCC
130 CACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGAAAAGCTTTTAATTCC
* * **
590150 A-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGGAAAACAAGAATAGTCATACTAATC
195 ACT-GTTTTTAATAGAATCAAAGTTTGCCTCTTAAATATAAAAAACAAGAATAGTCATACTAATC
590214 CC
259 CC
590216 ATACTAATCC
Statistics
Matches: 228, Mismatches: 28, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
316 78 0.34
317 127 0.56
318 23 0.10
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.36
Consensus pattern (318 bp):
GATGATTTTCTTTTCATGGAAATCTTTTTTTGTGCACCTATTTTCCTTAAAATCAAAGTTCATCC
CTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGACCCAAAAC
ACATTCCCTTCATTAGGATACACGACATTGACACTTTGGTGTCACAAGAAAAGCTTTTAATTCCA
CTGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATATAAAAAACAAGAATAGTCATACTAATCCC
CATTCTTTTCGGGATTAGGCACCACAAACGTAGTCTTCTCATAAGGATGCAAGATAAA
Found at i:590989 original size:803 final size:794
Alignment explanation
Indices: 589419--590925 Score: 1701
Period size: 803 Copynumber: 1.9 Consensus size: 794
589409 CATAAATGGT
* * **
589419 CATACTAATCCCTATTCCTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATT
1 CATACTAATCCCTATTCCTTAC-GGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACG
* * * * **
589484 ATAATGATGCCTTGGTTTTTCAAGAAGGGCTTTCTTCCGACCAATTATTATAAAAGTCTATGTTC
65 ATAATGATGCCTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTATTATAAAAGTCTAAATTC
* *
589549 GTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTTTTTGTGATTAGGCACTATAAACACAT
130 GTGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTTTTTGTGATTAGGCACTAAAAACACAT
* * * * * ** *
589614 TATCTTCATTAGGATAAATGATATTGATGATTTTCTTTTCATTGAAATCTTTTTTTTTGCACTTA
195 TATCCTCATTAGGATAAATGATATTGATGATGTTCTTTACATGGAAATCGTTTTCCTTGCACATA
** * * *
589679 TTTTCCTTTGAATCAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCATAACAATCTCCAT
260 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCATAACAAACTCCAT
* * * * *
589744 TCTTTTCAAGATTAGGATCCAAAACATATTGCCTTCATTAGGATACATGACATTGACACTTTGGT
325 TCTTTTCAAGATTAGGAACCAAAACATATTCCCATCATTAGGATACATCACATTGACACTCTGGT
* * *
589809 GTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTAATAGAATCAAAGTTTGCCTCTTAAATAAAAC
390 GTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTAATAAAATCAAAGTTTGCCTCTTAAATAAAAC
* * ** *
589874 AAACATGAATGGTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCACAAACGTAGTCTTCTC
455 AAACATGAACGATCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACGTAATCTTCTC
* * * * **** * *
589939 ATAAGGATGCAAGATAAAGATGATTTTCTTTTTATGGAAATCTTTTTTGTGCCCTATTTTTCTTA
520 ATAAGGATGCAAGATAAAGATGATTTTCTTTTCATAGAAAGCTTTCTTCCAACCAATTATTCTTA
* * *
590004 AAATCAAAGTTTATCCTTTCAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAA
585 AAATCAAAGTTCATCC-TTCAATAAGACAACCAACGATTCTAGTAACAATCTCCATTCTTTTCAA
* * * * * *
590069 GATTGGGACCCAAAAACACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTGTCACAAG
649 GATTAGGACACAAAAACACATTCCCTTCATTAGGATAAAAGACATTGACGATTTGCTGTCACAAG
* ** *
590134 AAAAGCTTTTAATTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGGAAAACAAGA
714 AAAAGCTTTTAATTCCATCATTTTTGATAGAATCAAAGTTCATCCCTTAAATATGGAAAACAAGA
590199 ATAGTCATACTAATCC
779 ATAGTCATACTAATCC
* *
590215 CATACTAATCCCTATTCTTCTTAC-GATTAGGCACTC-TAAGCGTAGTCTTCTCATATGGATACA
1 CATACTAATCCCTATTC--CTTACGGATTAGGCAC-CATAAACGTAGTCTTCTCATAAGGATACA
* * *
590278 CGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGT-AAAGTCTAAAT
63 CGATAATGATGCCTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTATTATAAAAGTCTAAAT
* * * * * * *
590342 TCTTGCCACCAATGAGCCGAACATGGATTTTAGTATTGATCACCATTGATTTTGTTATTAGGTAC
128 TCGTGCCACAAATGAGCCAAACAAGGATTCTAGTATTG-------TT--TTTTGTGATTAGGCAC
*
590407 TAAAAACACATTCTCCTCATTAGGATAAAAT-ATATTGATGATGTTCTTTACATGGAAAT-GTTT
184 TAAAAACACATTATCCTCATTAGGAT-AAATGATATTGATGATGTTCTTTACATGGAAATCGTTT
*
590470 TCCTTGC-CATATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAACCATCGATTCTCAT
248 TCCTTGCACATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCAT
* * * * *
590534 AAGAAACTCTATTCTTTTCAAGATTGGGAACCAAAAACACT-TTCCCATCTTTAGGATACTTCAC
313 AACAAACTCCATTCTTTTCAAGATTAGGAACC-AAAACA-TATTCCCATCATTAGGATACATCAC
** * *
590598 ATTGATGCTCTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAAAATCAAAGTTTGC
376 ATTGACACTCTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTAATAAAATCAAAGTTTGC
* * * * *
590663 CTCTTAAATAAGACAGACATGAACGATCATACTAATCTCTATTCTTTTCAAGATTAGGCACCATA
441 CTCTTAAATAAAACAAACATGAACGATCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACA
* * * *
590728 AATGTAATCTTCTCATAAGGATGCATGATAATGATG-TTTTGGTTTCTCA-AGAAACGCTTTCTT
506 AACGTAATCTTCTCATAAGGATGCAAGATAAAGATGATTTT-CTTT-TCATAGAAA-GCTTTCTT
* * * * * * * *
590791 CCAACCAATTATT-TTAAAAGTCTATGTTCGTGCC-TCAAATGAGCCAATCAAGGATTCTAGTAT
568 CCAACCAATTATTCTTAAAA-TCAAAGTTCAT-CCTTC-AATAAGACAACCAACGATTCTAGTAA
*** * ** * *
590854 TGTTCTTCATTCATTTTGTA-ATTAGG-CACATAAACACATTATCC-TCATTAGGATAAAAGACA
630 CAATCTCCATTC-TTTTCAAGATTAGGACACAAAAACACATT-CCCTTCATTAGGATAAAAGACA
*
590916 TTGATGATTT
693 TTGACGATTT
590926 TCTTTTCTTG
Statistics
Matches: 583, Mismatches: 105, Indels: 39
0.80 0.14 0.05
Matches are distributed among these distances:
795 41 0.07
796 95 0.16
797 1 0.00
798 4 0.01
802 84 0.14
803 228 0.39
804 119 0.20
805 11 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (794 bp):
CATACTAATCCCTATTCCTTACGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATACACGA
TAATGATGCCTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTATTATAAAAGTCTAAATTCG
TGCCACAAATGAGCCAAACAAGGATTCTAGTATTGTTTTTTGTGATTAGGCACTAAAAACACATT
ATCCTCATTAGGATAAATGATATTGATGATGTTCTTTACATGGAAATCGTTTTCCTTGCACATAT
TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGATTCTCATAACAAACTCCATT
CTTTTCAAGATTAGGAACCAAAACATATTCCCATCATTAGGATACATCACATTGACACTCTGGTG
TCGCAAGAAAAGCTTTTCTTTCCACCGATTTTAATAAAATCAAAGTTTGCCTCTTAAATAAAACA
AACATGAACGATCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACGTAATCTTCTCA
TAAGGATGCAAGATAAAGATGATTTTCTTTTCATAGAAAGCTTTCTTCCAACCAATTATTCTTAA
AATCAAAGTTCATCCTTCAATAAGACAACCAACGATTCTAGTAACAATCTCCATTCTTTTCAAGA
TTAGGACACAAAAACACATTCCCTTCATTAGGATAAAAGACATTGACGATTTGCTGTCACAAGAA
AAGCTTTTAATTCCATCATTTTTGATAGAATCAAAGTTCATCCCTTAAATATGGAAAACAAGAAT
AGTCATACTAATCC
Found at i:591521 original size:474 final size:475
Alignment explanation
Indices: 589957--592365 Score: 3040
Period size: 475 Copynumber: 5.0 Consensus size: 475
589947 GCAAGATAAA
* * * * *
589957 GATGATTTTCTTTTTATGGAAATCTTTT-TTGTGCCCTATTTTTCTTAAAATCAAAGTTTATCCT
1 GATGATTTTCTTTTCATGGAAATCTTTTCCT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
* *
590021 TTCAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
65 TTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
* * **
590086 ACATTCCCTTCATTAGGATACACGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTAATTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * *
590151 TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGGA-AAACAAGAATAGTCATACTAATCC
195 CCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATA-AGACAAACATGAAT-G-----C---T--
* * *
590215 CATACTAATCCCTATTCTTCTTAC--GATTAGGCACTC-TAAGCGTAGTCTTCTCATATGGATAC
248 CATACTAATCCCTATTCTT-TT-CGGGATTAGGCAC-CATAAACGTAGTCTTCTCATAAGGATGC
* * * * * * **
590277 ACGATAATGATGCTTTGGTTTCTCAAGAAAGGCTTCCTTCCCACCAATTTTTGTAAAGTCTAAAT
310 ATGATAATGATGTTTTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTATGT
* * * * * * * ** * * *
590342 TCTTGCCACCAATGAGCCGAACATGGATTTTAGTATTGATCACCATTGATTTTGTTATTAGGTAC
375 TCGTGCCTCAAATGAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCAC
* * *
590407 TAAAAACACATTCTCCTCATTAGGATAAAATATATT
440 TATAAACACATTATCCTCATTAGGATAAAAGATATT
* * * *
590443 GATGATGTTCTTTACATGGAAATGTTTTCCTTGCCATATTTTCCTTAAAATCAAAGTTCATCCCT
1 GATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * *
590508 TGAATAAGACAACCATCGATTCTCATAAGAAACTCTATTCTTTTCAAGATTGGGAACCAAAAACA
66 TAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
* * * * * * **
590573 CTTTCCCATCTTTAGGATACTTCACATTGATGCTCTGGTGTTGCAAGAAAAGCTTTTCTTTCCAC
131 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * * * * *
590638 CGATTTTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAGACATGAACGATCATACTAATCTCT
196 CGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATACTAATCCCT
** * *
590703 ATTCTTTTCAAGATTAGGCACCATAAATGTAATCTTCTCATAAGGATGCATGATAATGATGTTTT
261 ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGTTTT
* *
590768 GGTTTCTCAAGAAACGCTTTCTTCCAACCAATTATTTTAAAAGTCTATGTTCGTGCCTCAAATGA
326 GGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAATGA
*
590833 GCCAATCAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCAC-ATAAACACATTATC
390 GCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCACTATAAACACATTATC
*
590897 CTCATTAGGATAAAAGACATT
455 CTCATTAGGATAAAAGATATT
* ** *
590918 GATGATTTTCTTTTCTTGGAAATCTTTTTTTTGCCCTTATTTTCCTTTAAATCAAAGTTCATCCC
1 GATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCC
* * * *
590983 TTAAATAAGACAACTATCGATTCTCTTGACAATCTCCATTCTTTTCAAGATTGTGACCCAAAAAC
65 TTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAAC
* * * *
591048 ATAATCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
130 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
*
591113 CCGTTTTTAATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATAC-AATCCC
195 CCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATACTAATCCC
* * * * *
591177 TTTTCTTTTTGGGATTAGGCACCATAAACGTAGTCTTCTCATAATGATGCAGGATAATGACGTTT
260 TATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGTTT
* * *
591242 TAGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTATTTTCGTGCCTCAAATAA
325 TGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGA
* * * *
591307 GCCAAACATGGAATCTAGTATTGTTCTTCATTCATTTTGTGATTGGGCACTATAAACACATTATC
390 GCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCACTATAAACACATTATC
*
591372 CACATTAGGATAAAAGATATT
455 CTCATTAGGATAAAAGATATT
* * * * * *
591393 AAGGATTTTCTTTTCATAGAAATGTTTACCTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCT
1 GATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * *
591458 TAAATATGACTAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACGCAAAAACA
66 TAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
591523 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
131 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * * * *
591588 CGTTTTTGATAGAATCAAGGTTTGACTCTTAAATAGGACAACCATGAATGGTCATATTAATCCCC
196 CGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATACTAATCCCT
* * * * *
591653 ATTCTTCTCGGGGTT-GACACCATAAACGTAGTCTTCTCATAAGGATTCATGAT-ATCGATGCTT
261 ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAAT-GATGTTT
* * * * * *
591716 TGGTTTCTTAAGAATGGCTCTCTACCGACCAATTATTATAAAGTCTATGTTCATGCCTCAAATGA
325 TGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGA
* * * * *
591781 GCTATACAAGGATTCTAGTGTTTTTCTTCATTCATTTTGTAATTAGGCACTATAAACAAATTATC
390 GCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCACTATAAACACATTATC
*
591846 CTCATTAGGATAAATGATATT
455 CTCATTAGGATAAAAGATATT
* * * * * * *
591867 GATGACTTTT-TTATCATGAAAATCTTTTCCTTACTCTTGTTTTGCTTAAAATCAAGGTTCATCC
1 GATGA-TTTTCTTTTCATGGAAATCTTTTCCTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCC
*
591931 CTTAAATAAGACAACCATCGATTCTCATAATAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
64 CTTAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAA
* * ** *
591996 CACATTCCCTTCCTTAGGATGCACAACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTT-C
129 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
** * * * * *
592060 ACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACAAATATTAATGGTCATACTAATCC
194 ACCGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATACTAATCC
* * * * *
592125 CCATTCTTTTCGGAATTGGGCACCGTAAACGTAGTCTTCTCATAAGGATGCATGAAAATGATGTT
259 CTATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGTT
* * *
592190 TCGGTTTCTCAAGAAAGGCTTTCTTTCAGCCAATTATTATAAAAGTCTATGTTCGTGCCTCAAAT
324 TTGGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTAT-AAAGTCTATGTTCGTGCCTCAAAT
* * * * *
592255 GAGCTAATCAAGGATTCTAGTATTGTTCTTCATTCGTTTTGTGATTAGGCACTATAAACATATTA
388 GAGCCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCACTATAAACACATTA
* *
592320 TCCTCATTCGGATAAATGATATT
453 TCCTCATTAGGATAAAAGATATT
592343 GATGATTTTCTTTTCATGGAAAT
1 GATGATTTTCTTTTCATGGAAAT
592366 TGTTAGGATC
Statistics
Matches: 1664, Mismatches: 243, Indels: 42
0.85 0.12 0.02
Matches are distributed among these distances:
473 3 0.00
474 529 0.32
475 552 0.33
476 371 0.22
477 1 0.00
485 3 0.00
486 204 0.12
487 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
GATGATTTTCTTTTCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
TAAATAAGACAACCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGACCCAAAAACA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
CGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATGCTCATACTAATCCCT
ATTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTCTCATAAGGATGCATGATAATGATGTTTT
GGTTTCTCAAGAAAGGCTTTCTTCCAACCAATTATTATAAAGTCTATGTTCGTGCCTCAAATGAG
CCAAACAAGGATTCTAGTATTGTTCTTCATTCATTTTGTAATTAGGCACTATAAACACATTATCC
TCATTAGGATAAAAGATATT
Found at i:592695 original size:13 final size:13
Alignment explanation
Indices: 592677--592734 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
592667 AAATTGCATA
592677 GTATCGATACATT
1 GTATCGATACATT
592690 GTATCGATACA-T
1 GTATCGATACATT
*
592702 G-A-CCA-A-A-T
1 GTATCGATACATT
592710 GTATCGATACATT
1 GTATCGATACATT
592723 GTATCGATACAT
1 GTATCGATACAT
592735 GACCAAATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
8 3 0.08
9 2 0.05
10 4 0.11
11 2 0.05
12 3 0.08
13 24 0.63
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:592698 original size:33 final size:33
Alignment explanation
Indices: 592656--592754 Score: 125
Period size: 33 Copynumber: 3.0 Consensus size: 33
592646 CACCTTTAAA
*
592656 TGTATCGATACAAATTG-CATA-GTATCGATACAT
1 TGTATCGATAC-AA-TGACAAATGTATCGATACAT
592689 TGTATCGATAC-ATGACCAAATGTATCGATACAT
1 TGTATCGATACAATGA-CAAATGTATCGATACAT
592722 TGTATCGATAC-ATGACCAAATGTATCGATACAT
1 TGTATCGATACAATGA-CAAATGTATCGATACAT
592755 GAAAAGAATG
Statistics
Matches: 62, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
30 2 0.03
31 1 0.02
32 3 0.05
33 56 0.90
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAATGACAAATGTATCGATACAT
Found at i:592714 original size:20 final size:20
Alignment explanation
Indices: 592689--592774 Score: 96
Period size: 20 Copynumber: 4.6 Consensus size: 20
592679 ATCGATACAT
592689 TGTATCGATACATGACCAAA
1 TGTATCGATACATGACCAAA
592709 TGTATCGATACAT-------
1 TGTATCGATACATGACCAAA
592722 TGTATCGATACATGACCAAA
1 TGTATCGATACATGACCAAA
**
592742 TGTATCGATACATGAAAAGAA
1 TGTATCGATACATGACCA-AA
592763 TGTATCGATACA
1 TGTATCGATACA
592775 AGTCATTGGC
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
13 13 0.23
20 29 0.52
21 14 0.25
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (20 bp):
TGTATCGATACATGACCAAA
Found at i:592824 original size:13 final size:13
Alignment explanation
Indices: 592806--592832 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
592796 GTAGCTAAAC
592806 TTGTATCGATACA
1 TTGTATCGATACA
592819 TTGTATCGATACA
1 TTGTATCGATACA
592832 T
1 T
592833 CATAAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:594969 original size:13 final size:13
Alignment explanation
Indices: 594951--594976 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
594941 CAATTTTTTG
594951 TGTATCGATACAT
1 TGTATCGATACAT
594964 TGTATCGATACAT
1 TGTATCGATACAT
594977 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:597529 original size:20 final size:20
Alignment explanation
Indices: 597504--597580 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
597494 ATAATCACCC
597504 TGTATCGATACAAAGAAAAA
1 TGTATCGATACAAAGAAAAA
* *
597524 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACAAAGAA-----AAA
* *
597549 TGTATCGATACACAGAAACA
1 TGTATCGATACAAAGAAAAA
597569 TGTATCGATACA
1 TGTATCGATACA
597581 TTTTGGACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
20 30 0.62
25 18 0.38
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAAA
Found at i:599629 original size:15 final size:15
Alignment explanation
Indices: 599593--599630 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
599583 TTCATCAATT
* *
599593 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
599608 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
599623 TCATTTTG
1 TCATTTTG
599631 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:601463 original size:21 final size:21
Alignment explanation
Indices: 601434--601478 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
601424 AAGTTTTCAT
*
601434 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
601454 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
601476 TTT
1 TTT
601479 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:603714 original size:13 final size:13
Alignment explanation
Indices: 603696--603721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
603686 CAATTTTTTG
603696 TGTATCGATACAT
1 TGTATCGATACAT
603709 TGTATCGATACAT
1 TGTATCGATACAT
603722 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:605126 original size:475 final size:472
Alignment explanation
Indices: 604106--605177 Score: 1306
Period size: 475 Copynumber: 2.2 Consensus size: 472
604096 TCCTAACACT
* * *
604106 TTCATTAGGATACATGACATTGATGGTTTGGTGCCGCAA-AACAAGCTTTTCTTTCCTCCGTTTT
1 TTCATTAGGATACATGACATTGAT-GATTGGT--TGCAAGAA-AAGCTTTTCTTTCCACCGTTTT
* * * *
604170 TGATAGAATCAAAGATTGCCACTTAAATAAGCCAAACATGAATGGTCATACTAATCCCCATTCTT
62 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* ** *
604235 TTCAGGATTAGGCACCACCATAAACATAGTCTTCTCATATGGATGTATGATATTGACGCTTCGGT
127 TTCAGGATTAGG--CCACCATAAACATAGTCTTCTCATAAGGATCCATGATAATGACGCTTCGGT
* * *
604300 TTCTCAAGAAAGGCTTTCTTTTGACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGCCA
190 TTCTCAAGAAAGGCTTCCTTCTGACCAATTATTGTAAAATCTAAGTTCGTGCCTCAAATGAGCCA
* * * *
604365 AACGAGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCT
255 AACGAGGATTCTAGTATTGATCATCATTCATTTTGTGACTACGCACTAAAAACACATTATCCTCT
* * ** ***
604430 CTAGGATAAATGATATTGATTTTTGCCTTTTCGTAGATATCTTTTCTTTGCCCTAGTTTCCTTAA
320 CTAGGATAAAAGATATTGATTTTT--CTTTTCGTAGAAATCTTTTCCATGCCCTAGTTTAAATAA
604495 AATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAA
383 AATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAA
* *
604560 GATTAGGTCCTAAAAACACATTCCC
448 GATTAGGACCTAAAAACACATTCCA
* * *
604585 TTCATTAAGATACATGACTTTGATGATTTGTTGTCCCAAGAAAAGCTTTTCTTTCCACCG-TTTT
1 TTCATTAGGATACATGACATTGATGATTGGTTG---CAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * *
604649 GATAGAATCAAAGTTTGCCTTTTAAATAAGGCAAACATGAATAGTCATACTAATTCCCATTCTTG
63 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT-
* * * * *
604714 TT-GGGATTAGG-CACCATAAGCGTAGTCTTCTCATAAGGATACCA-GATAATGATGCTTTGGTT
127 TTCAGGATTAGGCCACCATAAACATAGTCTTCTCATAAGGAT-CCATGATAATGACGCTTCGGTT
* * *
604776 TTTCATGAAAGGCTTCCTTCTGACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAAATGAGCCAA
191 TCTCAAGAAAGGCTTCCTTCTGACCAATTATTGTAAAATCTAAGTTCGTGCCTCAAATGAGCCAA
* **
604841 AC-ATGGATTCTAGTATTGATCATCCTTCATTTTGTTCCTACGC-CTTAAAAACACATTATCCTC
256 ACGA-GGATTCTAGTATTGATCATCATTCATTTTGTGACTACGCAC-TAAAAACACATTATCCTC
* * *
604904 AT-TAGGATAAAAGATATTGAGGATTTTT-TTTTCAG-GGAAATGTTTTCCATGCCCTATTTTAA
319 -TCTAGGATAAAAGATATT---GATTTTTCTTTTC-GTAGAAATCTTTTCCATGCCCTAGTTTAA
* * * * * * *
604966 ATAAAAT-GAAAGTTCATTCCTTAAATAAGATAGGCATCGATTCTCGTAACAATGTCCATTTTTT
379 ATAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTT
*
605030 TCAAGATTGGGAACC-AAAAACACATTCTCA
444 TCAAGATTAGG-ACCTAAAAACACATTC-CA
*
605060 TT-ATTAGGATACATGACATTGATGCATTGGCATTGCAAGAAAAGCTTTTATTTCCACCGTTTTT
1 TTCATTAGGATACATGACATTGATG-ATTGG--TTGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* *
605124 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATCGTTATACTAAT
63 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
605178 AATCCCTATA
Statistics
Matches: 512, Mismatches: 62, Indels: 42
0.83 0.10 0.07
Matches are distributed among these distances:
474 117 0.23
475 260 0.51
476 4 0.01
477 3 0.01
478 82 0.16
479 44 0.09
480 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (472 bp):
TTCATTAGGATACATGACATTGATGATTGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
AGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCCACCATAAACATAGTCTTCTCATAAGGATCCATGATAATGACGCTTCGGTTTCTCA
AGAAAGGCTTCCTTCTGACCAATTATTGTAAAATCTAAGTTCGTGCCTCAAATGAGCCAAACGAG
GATTCTAGTATTGATCATCATTCATTTTGTGACTACGCACTAAAAACACATTATCCTCTCTAGGA
TAAAAGATATTGATTTTTCTTTTCGTAGAAATCTTTTCCATGCCCTAGTTTAAATAAAATCAAAA
GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTAGGA
CCTAAAAACACATTCCA
Found at i:607528 original size:476 final size:477
Alignment explanation
Indices: 605483--608239 Score: 3633
Period size: 475 Copynumber: 5.8 Consensus size: 477
605473 GTACACTTTC
* * * ** *
605483 GACCAATTATTATAAAAGTCTATA-TTCATGCCTCAAATGAGCCACACAAGGATTCTAGTACAGT
1 GACCAATTATTAT-AAAGTCTA-AGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGA
* * * *
605547 TCTGCATTCGTTTTGTGAATAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGAC
64 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGAT
* * * * * *
605612 GATTTTCTTTTTATTGAAATCTTTTTTTTGCACTTATTTTCCTTTAAATC-AAAGTTCAACCCTT
129 GATTTTCTTTTCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAAGTTCATCCCTT
* * * *
605676 AAATAAGACAAGCATCGATTCTCGTAGCAATCTCTATTCTTTTCAAGATTGGGACCCAAAAACAC
193 AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACAC
* * * * * * * *
605741 ATTGCCTCCATTAGGATACATGACATTGACGCTTTGGTGTTGCAAGTAAAGCTTTTCTTTCCACT
258 ATTCCCTTCATTAGGACACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACC
* *
605806 GTTTTTGATAGAATCAAAGCTTGCCTCTTAAATAAGACAAACATGAACGGTCATACTAATCCCCA
323 GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCA
* * * * * * * * *
605871 TTGTTTTCGGGATTAGGGGCCACAAACATAGTCTTGTCGTAAGGAACCATGATATTGATGATTCA
388 TTCTTTTCGGGATTAGGTGCCAGAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAA
*
605936 GTTTCTCAATAATGGCTTTCTTC-A
453 GTTTCTCAAGAATGGCTTTCTTCTA
* * * *
605960 GACCAATTATTATTATAAAGTCTAAGTTCATGCCTCAAATGAGCCTAACAAGGATTCTAGCATTG
1 GACC-A--ATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTG
* * *
606025 ATCTTCATTCATTTTGCGATTAGGCACTATAAACACGTTATCCTCATTTGGATAAATGATATTGA
63 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGA
* ** * *
606090 TGA-TTT-TTTTCATGGAAATCTTTTATTCACCCTATTTTCCTTAAAATCTAAAGTTCTTCCCTT
128 TGATTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTT
* * * * *
606153 AAATAGGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCATCATTGGGATCGAAAAACAC
193 AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACAC
* * * *
606218 ATTCCCTTCATTAGGACGCACGACATTGACACCTTGGTGTCGTAAGAAAAGCTTTTATTTCCACC
258 ATTCCCTTCATTAGGACACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACC
* * * *
606283 ATTTTTGATAGAATCAAAGTTTACCTCTTAAAAAAGACAAAC-TGGAATGGTCAAACTAATCCCC
323 GTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT-GAATGGTCATACTAATCCCC
* * * * * * *
606347 ATTCCTTTCGAGATTAGCTGCCA-TAATCGTAGTCTTCTCATAAGGAAGCATGATATTAATGCTT
387 ATTCTTTTCGGGATTAGGTGCCAGAAAT-ATAGTCTTCTCATAAGGAATCATGATATTGATGCTT
*
606411 CAGTTTCTCAAGAATGGCTTTCTTC-A
451 AAGTTTCTCAAGAATGGCTTTCTTCTA
* * * * *
606437 GACCAATTATTCTAAAATCTAAGTTCGTGCCTTAAATGAGCTAAAAAAGGATTCCAGTATTGATC
1 GACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
* * *
606502 TTCATTCCTTTTGTGGTT-GGCACTATAAACACATTATCCTCATTAGGATAAATGATATTAATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
*
606566 TTTTCCTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAA
131 TTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAA
* * * * *
606631 TAAGACAAAGCATTG-TTTTGGTAACAATCTCCATTCTTTTCAACATTTGGACTAAAAAACACAT
196 TAAGAC-AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACACAT
* *
606695 TCCTTTCATTAGGACACACGACATTGACGCCTTT-GTGTTGCAAGAAAAGCTTTTATTTCCACCG
260 TCCCTTCATTAGGACACACGACATTGACG-CTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCG
606759 TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAA-CCCCAT
324 TTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCAT
* *
606823 TCTTTTCCGGATTAGGTGCCATAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAAG
389 TCTTTTCGGGATTAGGTGCCAGAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAAG
*
606888 TTTCTCAATAATGGCTTTCTT-TA
454 TTTCTCAAGAATGGCTTTCTTCTA
*
606911 GACCAATTATTATAAAGTCTAAGTCCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
1 GACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
*
606976 TTCATTCATTTTGTGGTTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
* * * *
607041 TTTTTTTTTCATTGAAATCTTTTCTTTGCTCTACTTTCCTTAAAATCAAAAGTTCATCCCTTAAA
131 TTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAA
* * * *
607106 TAAGACAAGCATCGATTTTGGTAACAATCTCCATTCTTTTCAACATTTGGAGCAAAAAACACATT
196 TAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACACATT
* * * *
607171 CCCTTCATTAGGACACATGACATTGACGGC-TTGGTGTCACAGGAAAAGCTTTTATTTCCATCGT
261 CCCTTCATTAGGACACACGACATTGAC-GCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGT
*
607235 TTTTGATAGAATGAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATT
325 TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATT
*
607300 TTTTTCGGGATTAGGTGCCAGAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAAGT
390 CTTTTCGGGATTAGGTGCCAGAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAAGT
607365 TTCTCAAGAATGGCTTTCTTCTA
455 TTCTCAAGAATGGCTTTCTTCTA
607388 -ACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
1 GACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
* *
607452 TTCATTCATTTTGTGATTAGGCACTATAAATACATTATCCTCATTAGGAGAAATGATATTGATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
* * *
607517 TTATCTTTTCATGGAAATCTTTTCTTTGCTCTCTTTTCCTTAAAATCAAAAGTTCATCCCTTGAA
131 TTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTT-AA
* ** * *
607582 A-AAGACAGGCATCGATTCTCAG-AACAATCTCCATTCTTTTCAA-AGTTAAGACCTAGAAACAC
195 ATAAGACAAGCATCGATTCTC-GTAACAATCTCCATTCTTTTCAACA-TTGGGACCAAAAAACAC
* * * * * *
607644 AATCCCTT-ATTTAGGACATACGACACTGCCGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCAC
258 ATTCCCTTCA-TTAGGACACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCAC
* * * * **
607708 CATTTTCGATAAAATCAAAGTTTGCCTTTTAAATAAGACAAACACAAATGGTCATACTAATCCCC
322 CGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCC
* * * * * *
607773 ATTC-TTTCTAGGACTAGGCGCCGTGAACGT-T-GTCTTCTCATAAGG-ATCCATGACATTGATG
387 ATTCTTTTC-GGGATTAGGTGCC-AGAA-ATATAGTCTTCTCATAAGGAAT-CATGATATTGATG
** * *
607834 CTTTGGATTCTCAAGAAAGG-TTTCTTCT-
448 CTTAAGTTTCTCAAGAATGGCTTTCTTCTA
* * * * * * *
607862 GACCAATTACTATAAAGGCTATGTTCGTGCCCCAAAAGAGCCACACAAGGATTCTAGTATTGATC
1 GACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
* *
607927 TTCATTCATTTTGTGATTAGGCACTA-AAACTCATTGTCCTCATTAGGATAAATGATATTGATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
* * * *
607991 ATTTCTTTTCATGAAAATCTTTTTTTTGCCCTTATTTTCCTTGAAATC-AAAGTTCATCCCTTAA
131 TTTTCTTTTCATGGAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAAGTTCATCCCTTAA
* * * * * *
608055 ATAAGACGACCATCGATTCTCGTAACAATCTCCATTCTTCTCAAGATTGGGACCCAAAAGCACAT
195 ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACACAT
* * * * *
608120 TACCTTCATTAGGATACATGACATTGACGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT
260 TCCCTTCATTAGGACACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGT
* * * *
608185 TTTTGATGGAATCATAGTTTACATCTTAAATAAGACAAACATGAATGGTCATACT
325 TTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACT
608240 TGTAGACACT
Statistics
Matches: 2014, Mismatches: 231, Indels: 73
0.87 0.10 0.03
Matches are distributed among these distances:
473 47 0.02
474 456 0.23
475 595 0.30
476 512 0.25
477 288 0.14
478 6 0.00
479 102 0.05
480 8 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (477 bp):
GACCAATTATTATAAAGTCTAAGTTCGTGCCTCAAATGAGCCAAACAAGGATTCCAGTATTGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTATCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAAGTTCATCCCTTAAA
TAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGACCAAAAAACACATT
CCCTTCATTAGGACACACGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTT
TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTC
TTTTCGGGATTAGGTGCCAGAAATATAGTCTTCTCATAAGGAATCATGATATTGATGCTTAAGTT
TCTCAAGAATGGCTTTCTTCTA
Found at i:608387 original size:34 final size:34
Alignment explanation
Indices: 608348--608635 Score: 323
Period size: 34 Copynumber: 8.7 Consensus size: 34
608338 CGTGGCACTC
608348 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
*
608382 TTTAAAGCCCACAGCTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
*
608416 TTCAAAGCCCACAACTCCGTGGCA----C-TCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
608445 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* *
608479 TTCAAAGCCCACAACGCCGTGGCA-C--C--C-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* *
608507 TTTAAAGCCCACAATTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTT--CTT
* * *
608544 TTCAAAGCCCACAACTCCGTGGCACTTTTTTC-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* * *
608577 TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTT-CTT
*
608613 TTT-AAGTCCACAACTCCGTGGCA
1 TTTAAAGCCCACAACTCCGTGGCA
608636 TCTTTTTCCT
Statistics
Matches: 221, Mismatches: 16, Indels: 33
0.82 0.06 0.12
Matches are distributed among these distances:
28 22 0.10
29 28 0.13
30 2 0.01
31 1 0.00
33 28 0.13
34 87 0.39
35 20 0.09
36 9 0.04
37 24 0.11
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
Found at i:608463 original size:63 final size:65
Alignment explanation
Indices: 608351--608642 Score: 357
Period size: 63 Copynumber: 4.4 Consensus size: 65
608341 GGCACTCTTT
*
608351 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAGCTCCGTGGCAC-CTTCTT-C
1 AAAGCCCACAACTCCGTGGCA----C-TCTTTTTAAAGCCCACAACTCCGTGGCACTCTTCTTCC
608414 TTTTC
61 TTTTC
608419 AAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTCTTCCTTTTC
* * * *
608482 AAAGCCCACAACGCCGTGGCAC-CCTTTTAAAGCCCACAATTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTCTT-CCTTTT
608546 C
65 C
* *
608547 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAAGCCCACAACTCCGTGGCAC--TCTT-TTT-AAAGCCCACAACTCCGTGGCACTCTTCTT-CC
608612 TTTT-
61 TTTTC
*
608616 -AAGTCCACAACTCCGTGGCA-TCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT
608643 CCTTCCCAAA
Statistics
Matches: 205, Mismatches: 11, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
62 26 0.13
63 66 0.32
64 4 0.02
65 30 0.15
68 41 0.20
69 3 0.01
70 35 0.17
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (65 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTCTTCCTTTTC
Found at i:608501 original size:97 final size:96
Alignment explanation
Indices: 608337--608642 Score: 362
Period size: 97 Copynumber: 3.2 Consensus size: 96
608327 TCGCCGGGCG
* *
608337 CCGTGGCACTC--TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACAGCTCC
1 CCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCC
608400 GTGGCACCTTCTTCTTTTCAAAGCCCACAACT
66 GTGGCACCTTCTTCTTTT-AAAGCCCACAACT
*
608432 CCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACGCC
1 CCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCC
*
608497 GTGGCA-C--C--CTTTTAAAGCCCACAATT
66 GTGGCACCTTCTTCTTTTAAAGCCCACAACT
* *
608523 CCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC-TTTCAAAGCCC
1 CCGTGGCACTC----T---TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCC
* *
608587 ACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACT
58 ACAACTCCGTGGCAC-CTTCTT--CTTTTAAAGCCCACAACT
608628 CCGTGGCA-TCTTTTT
1 CCGTGGCACTCTTTTT
608643 CCTTCCCAAA
Statistics
Matches: 183, Mismatches: 10, Indels: 34
0.81 0.04 0.15
Matches are distributed among these distances:
91 23 0.13
92 5 0.03
94 1 0.01
95 12 0.07
96 1 0.01
97 59 0.32
98 28 0.15
99 27 0.15
100 2 0.01
104 2 0.01
105 18 0.10
106 5 0.03
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.31
Consensus pattern (96 bp):
CCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCC
GTGGCACCTTCTTCTTTTAAAGCCCACAACT
Found at i:608680 original size:32 final size:31
Alignment explanation
Indices: 608643--608740 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 31
608633 GCATCTTTTT
608643 CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
*
608674 CTCTTCCTAAAGCCCACACAAGTCGGTGGCAA
1 C-CTTCCCAAAGCCCACACAAGTCGGTGGCAA
608706 CCTTCTTCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTC--CCAAAGCCCACACAAGTCGGTGGCAA
608739 CC
1 CC
608741 CCTCTAAGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
31 5 0.08
32 30 0.48
33 27 0.44
ACGTcount: A:0.28, C:0.38, G:0.18, T:0.16
Consensus pattern (31 bp):
CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
Found at i:608724 original size:33 final size:32
Alignment explanation
Indices: 608648--608740 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
608638 TTTTTCCTTC
608648 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
608679 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
608713 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
608741 CCTCTAAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:608863 original size:49 final size:49
Alignment explanation
Indices: 608745--609360 Score: 806
Period size: 49 Copynumber: 12.6 Consensus size: 49
608735 GCAACCCCTC
*
608745 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
608797 TAAGTCTAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
608846 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
608895 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
608944 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
608993 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * *
609045 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
609094 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
609143 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
** * *
609186 TAAGAGCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
609235 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
609278 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC--CTT-CATCTT
* *
609330 TAAGTTCAATGTAGCTGGCCTTGAATCAGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCA
609361 CTTTGACATC
Statistics
Matches: 500, Mismatches: 46, Indels: 36
0.86 0.08 0.06
Matches are distributed among these distances:
43 76 0.15
45 2 0.00
47 1 0.00
49 302 0.60
50 5 0.01
51 2 0.00
52 112 0.22
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:609096 original size:199 final size:199
Alignment explanation
Indices: 608745--609531 Score: 892
Period size: 199 Copynumber: 3.9 Consensus size: 199
608735 GCAACCCCTC
* * * * *
608745 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCTAATGTA
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT-CATCTTTAAGTCCAATATA
* * *
608810 GCTGGCCTTGACTCAGCACATTGGCACC--TTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
64 GCTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATC
* *
608873 AGCATATTGGCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
129 AGCACATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTT
608938 CATCTT
194 CATCTT
*
608944 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TTCATCTTTAAGTCCAATATAGC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTCATCTTTAAGTCCAATATAGC
* *
609008 TGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCA
66 TGGCCTTGAATCAGCATATTGGCACCTTTT-CATCTTTAAGTCCAATATAGCTGGCCTTGAATCA
* *
609073 GCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
130 GCACATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTC
609138 ATCTT
195 ATCTT
* *
609143 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTT-A-----AGAG--CAATATCG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTCATCTTTA-AGTCCAATATAG
* *
609200 CTGGCCTTGAATCAGCATATTGGCA--TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
65 CTGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCA
*
609263 GCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTT
130 GCACATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCT
609322 TCCATCTT
193 T-CATCTT
* * * * *
609330 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACTTTGACATCCTTTTTCTCATCCTTAAGCCCAAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC---TT-TCATCTTTAAGTCCAAT
* * * *
609395 ATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTCTTCTCATCATCATTTTTAAGTCCA
61 ATAGCTGGCCTTGAATCAGCATATTGG---------CAC-CTT-T--TCATC---TTTAAGTCCA
* * * *
609460 ATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTAGCTGGCCTTGA
110 ATATAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGA
609525 ATCAGCA
175 ATCAGCA
609532 CGTTGACATC
Statistics
Matches: 512, Mismatches: 31, Indels: 66
0.84 0.05 0.11
Matches are distributed among these distances:
184 39 0.08
186 6 0.01
187 41 0.08
188 2 0.00
190 44 0.09
191 5 0.01
192 1 0.00
193 33 0.06
194 1 0.00
195 2 0.00
196 43 0.08
197 4 0.01
198 3 0.01
199 206 0.40
200 2 0.00
208 2 0.00
211 1 0.00
212 1 0.00
214 5 0.01
217 38 0.07
221 1 0.00
223 32 0.06
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (199 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTCATCTTTAAGTCCAATATAGC
TGGCCTTGAATCAGCATATTGGCACCTTTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAG
CACATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCA
TCTT
Found at i:609213 original size:92 final size:92
Alignment explanation
Indices: 609091--609361 Score: 461
Period size: 92 Copynumber: 2.9 Consensus size: 92
609081 GCACCTTCAT
609091 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
609156 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
**
609183 CTTTAAGAGCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
609248 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
609275 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
609340 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGAATCAGCAC
609362 TTTGACATCC
Statistics
Matches: 168, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
92 126 0.75
94 5 0.03
95 37 0.22
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:609565 original size:171 final size:171
Alignment explanation
Indices: 609275--609669 Score: 655
Period size: 171 Copynumber: 2.3 Consensus size: 171
609265 ACATTGGCAC
*
609275 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTTCAAT
* *
609340 GTAGCTGGCCTTGAATCAGCACTTTGACATCCTTTTTCTCATCCTTAAGCCCAATATCGTTGGCC
63 GTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCCTTAAGCCCAATATCATTGGCC
*
609405 ATGAATCAACATATTGGCATCTTTATCACTCTTCTCATCATCAT
128 ATGAATCAACATATTGGCATCTTTATCACTATTCTCATCATCAT
* *
609449 TTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
* *
609514 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCCAATATCATTGGCCATG
66 GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCCTTAAGCCCAATATCATTGGCCATG
*
609579 AATCAACATATTGGCATCTTTATCACTATTCTCATCTTCAT
131 AATCAACATATTGGCATCTTTATCACTATTCTCATCATCAT
* * *
609620 CTTTAAGACCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
609670 ATCTCTAAAA
Statistics
Matches: 208, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
171 165 0.79
172 5 0.02
174 38 0.18
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (171 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTTCAATGTA
GCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCCTTAAGCCCAATATCATTGGCCATG
AATCAACATATTGGCATCTTTATCACTATTCTCATCATCAT
Found at i:610505 original size:33 final size:33
Alignment explanation
Indices: 610468--610534 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
610458 TTCAACGATT
610468 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
610501 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
610534 T
1 T
610535 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:610506 original size:13 final size:13
Alignment explanation
Indices: 610488--610512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
610478 CATAAAATGT
610488 TGTATCGATACAA
1 TGTATCGATACAA
610501 TGTATCGATACA
1 TGTATCGATACA
610513 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:610595 original size:13 final size:13
Alignment explanation
Indices: 610577--610601 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
610567 ATTACTCACA
610577 TGTATCGATACAT
1 TGTATCGATACAT
610590 TGTATCGATACA
1 TGTATCGATACA
610602 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:610666 original size:52 final size:52
Alignment explanation
Indices: 610610--610738 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
610600 CACTGATCTT
*
610610 TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
610662 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
610714 TGTATCGATACATGCAAATAAATTT
1 TGTATCGATACATGCAGACAAATTT
610739 TCATATTTCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGACAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:618047 original size:1 final size:1
Alignment explanation
Indices: 618008--618039 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
617998 AAAAAGATGC
618008 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
618040 GAGAAAAACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:619024 original size:30 final size:30
Alignment explanation
Indices: 618988--619068 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
618978 ATACCTTTTT
618988 AAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTC
* *
619018 AAAGTCCACGACTCAGTGGCATTTTTTCTT
1 AAAGTCCACGACTCAGTGGCATTTTGTCTC
* * *
619048 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
619069 CTTGTTCCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTC
Found at i:619114 original size:61 final size:60
Alignment explanation
Indices: 619046--619806 Score: 482
Period size: 63 Copynumber: 12.0 Consensus size: 60
619036 GCATTTTTTC
* *
619046 TTAAAGCCCACAACTCCGTGGCACTTGTTCCTTTTAAGTCCACAACTCCGTGGGCACCCTT
1 TTAAAGCCCACAACTCCGTGGCACTTTTTCCTTTTAAGCCCACAACTCCGT-GGCACCCTT
* * *
619107 TTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTT
1 TTAAAGCCCACAACTCCGTGGCAC-TTTTTCCT-TTTAAGCCCACAACTCCGTGGCACCCTT
* * *
619169 TTAAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAAACTCCGTGGCACCCTT
1 TT-AAAGCCCACAACTCCGTGGCAC-TTTTTCCT-TTTAAGCCCAC-AACTCCGTGGCACCCTT
* * * * *
619233 TTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCGT
1 TTAAAGCCCACAACTCCGTGGCAC-TTTTTCCT-TTTAAGCCCACAACTCCGTGGCACCCTT
* * * **
619295 TT-AAGCCAAAAACTACGTGGCACCTTTTTTTTTTTATAAGCCCAC-ACTCCGTGGCACCTTTTT
1 TTAAAGCCCACAACTCCGTGGCA-C-TTTTTCCTTT-TAAGCCCACAACTCCGTGGCACC-----
*
619358 CTG
58 CTT
*
619361 TTAAAGCCCACAACTCCGTGGCAC----T-CTTTAAAGCCCACAACTCCGTGGGCACCTTCTTCT
1 TTAAAGCCCACAACTCCGTGGCACTTTTTCCTTTTAAGCCCACAACTCCGT-GGCA-C--C--C-
619421 TT
59 TT
* * * * * *
619423 TTAAAG-CCACAGCTCCGTGGCACCTTCTT-CTTTTCAAAGCCCACGACTACGGGGCAACTCTT
1 TTAAAGCCCACAACTCCGTGGCA-CTTTTTCCTTTT--AAGCCCACAACTCCGTGGC-ACCCTT
* * * *
619485 TGTAAAGCCCACAACTCAGTGGCACTCTTTTTCTCTTTTCAAAACCCACGACTCCGTGGCACTC-
1 T-TAAAGCCCACAACTCCGTGGCA--CTTTTTC-CTTTT--AAGCCCACAACTCCGTGGCACCCT
619549 T
60 T
* * *
619550 TTAAAGCCCACAACTCCGTGGCAACCTTCTTCTTTTTAAAGCCCACAGCTCCGTGGCACCTTCTT
1 TTAAAGCCCACAACTCCGTGGC-A-CTTTTTCCTTTT-AAGCCCACAACTCCGTGGCACC--C-T
619615 CGT
60 --T
* * *
619618 TTCAAGCCCACAACT-CGTGGCAC-TCTT--TTTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TTAAAGCCCACAACTCCGTGGCACTTTTTCCTTTTAAGCCCACAACTCCGTGGCACC--C-T-T
* *
619678 TTCAAAAGCCCACAACGCCGTGGCAC-----CCTTTTAAAGCCCACAATTCCGTGGCACTCTTTT
1 TT--AAAGCCCACAACTCCGTGGCACTTTTTCCTTTT-AAGCCCACAACTCCGTGGCA-------
619738 TCCCTT
56 -CCCTT
* * *
619744 TTCAAAG-CCACAACTCCGTGGCACTTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTT
1 TT-AAAGCCCACAACTCCGTGGCACTTTTTCCTTT-TAAGCCCACAACTCCGTGGCACCCTT
619805 TT
1 TT
619807 TCCCTTTTAA
Statistics
Matches: 586, Mismatches: 56, Indels: 116
0.77 0.07 0.15
Matches are distributed among these distances:
59 8 0.01
60 13 0.02
61 111 0.19
62 115 0.20
63 122 0.21
64 81 0.14
65 13 0.02
66 17 0.03
67 51 0.09
68 30 0.05
69 23 0.04
70 2 0.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.30
Consensus pattern (60 bp):
TTAAAGCCCACAACTCCGTGGCACTTTTTCCTTTTAAGCCCACAACTCCGTGGCACCCTT
Found at i:619127 original size:29 final size:29
Alignment explanation
Indices: 619048--619806 Score: 292
Period size: 34 Copynumber: 24.0 Consensus size: 29
619038 ATTTTTTCTT
619048 AAAGCCCACAACTCCGTGGCACTTGTTCCTTTT-
1 AAAGCCCACAACTCCGTGGCAC-----CCTTTTC
*
619081 -AAGTCCACAACTCCGTGGGCACCCTTTT-
1 AAAGCCCACAACTCCGT-GGCACCCTTTTC
* **
619109 AAAGCCCACAATTCCGTGGCACTTTTTTC
1 AAAGCCCACAACTCCGTGGCACCCTTTTC
* *
619138 ATCTTTAAGTCCACAACTCCGTGGCACCCTTTTA
1 A-----AAGCCCACAACTCCGTGGCACCCTTTTC
* **
619172 AAAGCCCACAATTCCGTGGCACTTTTTTC
1 AAAGCCCACAACTCCGTGGCACCCTTTTC
*
619201 ATCTTTAAGTCCACAAACTCCGTGGCACCCTTTT-
1 A-----AAGCCCAC-AACTCCGTGGCACCCTTTTC
* * **
619235 AAAGCCCACAATTCTGTGGCACTTTTTTC
1 AAAGCCCACAACTCCGTGGCACCCTTTTC
* *
619264 ATCTTTAAGTCCACAACTCCGTGGCACCCGTTT-
1 A-----AAGCCCACAACTCCGTGGCACCCTTTTC
* * * * *
619297 -AAGCCAAAAACTACGTGGCACCTTTTTTTTTTT
1 AAAGCCCACAACTCCGTGGCACC-----CTTTTC
*
619330 ATAAGCCCAC-ACTCCGTGGCACCTTTTTC
1 A-AAGCCCACAACTCCGTGGCACCCTTTTC
*
619359 TGTTAAAGCCCACAACTCCGTGGCACTC-TTT-
1 ----AAAGCCCACAACTCCGTGGCACCCTTTTC
*
619390 AAAGCCCACAACTCCGTGGGCACCTTCTTCTTTTT
1 AAAGCCCACAACTCCGT-GGCA-C--C--CTTTTC
*
619425 AAAG-CCACAGCTCCGTGGCACCTTCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCA-C--C--CTTTTC
* * * *
619458 AAAGCCCACGACTACGGGGCAACTCTTTGT-
1 AAAGCCCACAACTCCGTGGC-ACCCTTT-TC
*
619488 AAAGCCCACAACTCAGTGGCACTCTTTTTCTCTTTTC
1 AAAGCCCACAACTCCGTGGCA--C-----C-CTTTTC
* * *
619525 AAAACCCACGACTCCGTGGCACTC-TTT-
1 AAAGCCCACAACTCCGTGGCACCCTTTTC
*
619552 AAAGCCCACAACTCCGTGGCAACCTTCTTCTTTTT
1 AAAGCCCACAACTCCGTGGC-A-C--C--CTTTTC
*
619587 AAAGCCCACAGCTCCGTGGCACCTTCTTCGTTTC
1 AAAGCCCACAACTCCGTGGCACC--C-T--TTTC
* *
619621 -AAGCCCACAACT-CGTGGCACTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCCTTTTC
619648 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTC
1 AAAGCCCACAACTCCGTGGCACC--C-T-TTTC
*
619681 AAAAGCCCACAACGCCGTGGCACCCTTTT-
1 -AAAGCCCACAACTCCGTGGCACCCTTTTC
*
619710 AAAGCCCACAATTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCA--------CCCTTTTC
**
619747 AAAG-CCACAACTCCGTGGCACTTTTTTCTTTC
1 AAAGCCCACAACTCCGTGGCAC---CCT-TTTC
*
619779 AAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACCCTTTT
619807 TCCCTTTTAA
Statistics
Matches: 565, Mismatches: 76, Indels: 174
0.69 0.09 0.21
Matches are distributed among these distances:
27 56 0.10
28 70 0.12
29 68 0.12
30 26 0.05
31 9 0.02
32 48 0.08
33 72 0.13
34 120 0.21
35 47 0.08
36 23 0.04
37 26 0.05
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (29 bp):
AAAGCCCACAACTCCGTGGCACCCTTTTC
Found at i:619349 original size:34 final size:34
Alignment explanation
Indices: 619305--619843 Score: 448
Period size: 34 Copynumber: 16.6 Consensus size: 34
619295 TTAAGCCAAA
* *
619305 AACTACGTGGCACCTTTTTTTTTTTATAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTA-AAGCCCAC
*
619340 -ACTCCGTGGCACCTTTTTC-TGTTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
619372 AACTCCGTGGCA-C----TC--TTTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
*
619399 AACTCCGTGGGCACCTTCTTCTTTTTAAAG-CCAC
1 AACTCCGT-GGCACCTTTTTCTTTTTAAAGCCCAC
* * *
619433 AGCTCCGTGGCACCTTCTTCTTTTCAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
* * * * *
619467 GACTACGGGGCAAC----TCTTTGTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
* *
619497 AACTCAGTGGCACTCTTTTTCTCTTTTCAAAACCCAC
1 AACTCCGTGGCAC-CTTTTTCT-TTTT-AAAGCCCAC
*
619534 GACTCCGTGGCA-C----TC--TTTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
*
619561 AACTCCGTGGCAACCTTCTTCTTTTTAAAGCCCAC
1 AACTCCGTGGC-ACCTTTTTCTTTTTAAAGCCCAC
* * * *
619596 AGCTCCGTGGCACCTTCTTC-GTTTCAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
619629 AACT-CGTGGCA-C----TCTTTTTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
* **
619657 AACTCCGTGGCACCTTCTTCTTTCAAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
*
619691 AACGCCGTGGCACC-----C-TTTTAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
* *
619719 AATTCCGTGGCACTCTTTTTCCCTTTTCAAAG-CCAC
1 AACTCCGTGGCAC-CTTTTT--CTTTTTAAAGCCCAC
* *
619755 AACTCCGTGGCACTTTTTTC-TTTCAAAGCCCAC
1 AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
* *
619788 AACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCAC
1 AACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCAC
*
619824 AACTCCGTGGCATCTTTTTC
1 AACTCCGTGGCACCTTTTTC
619844 CTTCCCAAGC
Statistics
Matches: 415, Mismatches: 44, Indels: 91
0.75 0.08 0.17
Matches are distributed among these distances:
27 39 0.09
28 47 0.11
29 11 0.03
30 23 0.06
31 4 0.01
32 24 0.06
33 71 0.17
34 83 0.20
35 45 0.11
36 43 0.10
37 25 0.06
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (34 bp):
AACTCCGTGGCACCTTTTTCTTTTTAAAGCCCAC
Found at i:619382 original size:94 final size:92
Alignment explanation
Indices: 619231--619843 Score: 375
Period size: 95 Copynumber: 6.4 Consensus size: 92
619221 CGTGGCACCC
* * * * * *
619231 TTTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCGTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-T-TTAAAGCCCACAACTCCGTGGCACTC-TT
* *
619296 T-AAGCCAAAAACTACGTGGCACCTTTTTTT
63 TAAAGCCCACAACT-CGTGGCACCTTTTTTT
619326 TTTTATAAGCCCAC-ACTCCGTGGCACCTTTTTCTGTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTA-AAGCCCACAACTCCGTGGCACCTTTTTCT-TTAAAGCCCACAACTCCGTGGCACTCTTT
* *
619390 AAAGCCCACAACTCCGTGGGCACCTTCTTCT
64 AAAGCCCACAACT-CGT-GGCACCTTTTTTT
* * * * *
619421 TTTTAAAG-CCACAGCTCCGTGGCACCTTCTTCTTTTCAAAGCCCACGACTACGGGGCAACTCTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-TTT-AAAGCCCACAACTCCGTGGC-ACTC-T
619485 TGTAAAGCCCACAACTCAGTGGCACTCTTTTTCTCT
62 T-TAAAGCCCACAACTC-GTGGCAC-CTTTTT-T-T
* * *
619521 TTTCAAAACCCACGACTCCGTGGCA-C----TCTTTAAAGCCCACAACTCCGTGGCAACCTTCTT
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTAAAGCCCACAACTCCGTGGC-A----C-T
* * *
619581 CTTTTTAAAGCCCACAGCTCCGTGGCACC-TTCTTC
60 C--TTTAAAGCCCACAACT-CGTGGCACCTTTTTTT
* * *
619616 GTTTCAAGCCCACAACT-CGTGGCA-C-TCTT-TTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTAAAGCCCACAACTCCGTGGCA----C-TC
* *
619677 TTTCAAAAGCCCACAACGCCGTGGCACC------C
61 TTT--AAAGCCCACAAC-TCGTGGCACCTTTTTTT
*
619706 TTTTAAAGCCCACAATTCCGTGGCACTCTTTTTCCCTTTTCAAAG-CCACAACTCCGTGGCACTT
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT--C-TTT-AAAGCCCACAACTCCGTGGCAC--
**
619770 TTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
59 ---TCTTT-AAAGCCCACAACT-CGTGGCAC-CTTTTT-TT
* *
619811 TTTTAAAGTCCACAACTCCGTGGCATCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
619844 CTTCCCAAGC
Statistics
Matches: 424, Mismatches: 45, Indels: 91
0.76 0.08 0.16
Matches are distributed among these distances:
90 15 0.04
91 7 0.02
93 11 0.03
94 90 0.21
95 99 0.23
96 38 0.09
97 32 0.08
98 49 0.12
99 26 0.06
100 12 0.03
101 14 0.03
102 1 0.00
104 6 0.01
105 24 0.06
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (92 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTAAAGCCCACAACTCCGTGGCACTCTTTAA
AGCCCACAACTCGTGGCACCTTTTTTT
Found at i:619507 original size:64 final size:62
Alignment explanation
Indices: 619421--619595 Score: 219
Period size: 64 Copynumber: 2.8 Consensus size: 62
619411 ACCTTCTTCT
*
619421 TTTTAAAG-CCACAGCTCCGTGGCACCTTCTTCTTTTCAAAGCCCACGACTACGGGGCAACTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACGACTACGGGGC-ACTC
* * * * *
619483 TTTGTAAAGCCCACAACTCAGTGGCACTCTTTTTCTCTTTTCAAAACCCACGACTCCGTGGCACT
1 TTT-TAAAGCCCACAACTCCGTGGCAC-C-TTCT-TCTTTTCAAAGCCCACGACTACGGGGCACT
619548 C
62 C
*
619549 -TTTAAAGCCCACAACTCCGTGGCAACCTTCTTCTTTTTAAAGCCCAC
1 TTTTAAAGCCCACAACTCCGTGGC-ACCTTCTTCTTTTCAAAGCCCAC
619596 AGCTCCGTGG
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
62 17 0.18
63 8 0.08
64 36 0.37
65 5 0.05
66 7 0.07
67 24 0.25
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (62 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACGACTACGGGGCACTC
Done.