genome.fa.s1467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1467
Parameters: 2 7 7 80 10 50 1000
Length:  113544

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571--595	13	1.9	13	100	0	50	0	4	8	88	0.64
552--594	15	2.8	16	85	7	61	0	6	6	86	0.72
12845--13077	79	2.9	77	78	5	243	30	15	28	25	1.96
13032--13108	28	2.8	28	85	0	91	22	19	35	23	1.96
13115--13215	52	1.9	53	81	2	123	35	9	23	30	1.88
12981--13424	212	2.1	210	88	3	642	32	13	26	28	1.94
13246--13315	27	2.5	28	86	2	88	22	20	32	24	1.97
13303--13424	51	2.4	51	84	5	147	33	11	22	31	1.90
15785--15810	13	2.0	13	100	0	52	38	15	15	30	1.88
15767--15830	33	1.9	33	87	0	92	42	17	15	25	1.88
15854--15924	32	2.2	32	92	0	124	36	15	12	35	1.86
15862--15926	19	3.8	18	71	24	68	38	13	12	35	1.83
15962--16038	21	3.7	21	89	3	111	35	16	11	36	1.86
20564--20619	19	2.9	19	87	10	71	85	10	1	1	0.74
20561--20632	23	3.1	23	88	7	94	84	9	2	2	0.82
20562--20608	8	5.9	8	85	9	69	87	10	0	2	0.63
20561--20632	11	6.4	11	78	15	67	84	9	2	2	0.82
21816--21841	13	2.0	13	100	0	52	38	15	15	30	1.88
24072--24123	21	2.4	21	78	9	61	63	3	9	23	1.41
28144--28190	21	2.3	20	82	10	60	31	19	4	44	1.70
30537--30599	32	1.9	32	87	6	90	39	15	14	30	1.87
31745--32120	29	12.9	29	86	3	515	29	30	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31742--32074	57	5.8	57	90	2	515	29	31	14	24	1.95
31745--32121	86	4.3	86	89	3	542	29	30	15	24	1.96
32684--32762	40	2.0	39	82	7	97	36	12	12	37	1.82
34955--35300	97	3.6	96	94	1	602	25	31	14	28	1.95
38672--38840	20	8.9	20	71	17	126	42	10	15	30	1.81
38624--38851	92	2.5	92	91	0	377	43	10	16	28	1.82
40117--40314	110	1.8	109	82	3	254	35	11	17	35	1.86
40711--40765	27	2.0	27	100	0	110	29	14	3	52	1.58
40793--40824	12	2.4	14	90	10	50	78	0	0	21	0.76
42382--42427	20	2.3	21	81	11	60	36	2	0	60	1.09
42391--42428	20	1.9	20	94	0	67	36	2	0	60	1.11
42753--43298	269	2.0	271	89	4	839	31	17	19	31	1.95
44536--44617	18	4.9	18	64	26	54	43	0	0	56	0.99
44545--44617	17	4.1	18	78	15	71	41	0	0	58	0.98
45585--45629	10	4.5	10	81	10	56	71	0	2	26	0.98
45585--45629	21	2.2	20	88	7	65	71	0	2	26	0.98
46136--46429	145	2.0	144	84	5	378	36	8	12	42	1.74
47934--47964	5	6.2	5	92	0	53	54	0	3	41	1.16
48285--48446	72	2.2	73	79	6	166	46	9	4	40	1.56
49304--49337	16	2.1	16	100	0	68	76	0	0	23	0.79
49788--49843	30	1.9	28	85	7	76	60	3	3	32	1.31
56164--56219	19	2.9	19	91	2	94	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56204--56228	13	1.9	13	100	0	50	36	16	16	32	1.90
56788--56892	55	1.9	55	92	1	176	35	20	6	38	1.79
61630--61808	48	3.8	48	87	1	243	36	15	26	21	1.93
61916--62709	56	13.9	56	80	7	724	23	18	29	28	1.98
61917--62617	28	24.4	28	83	6	640	23	18	28	28	1.98
62493--62568	32	2.5	30	81	12	91	22	22	23	31	1.98
61917--62877	28	34.0	27	80	10	259	24	17	30	27	1.97
62579--62881	54	5.6	55	87	4	393	28	14	32	24	1.94
62610--62881	81	3.3	81	89	2	393	28	13	33	24	1.94
72247--72271	13	1.9	13	100	0	50	32	16	16	36	1.90
74649--74702	26	2.1	26	100	0	108	33	14	18	33	1.92
78393--78445	20	2.7	20	88	5	72	33	20	11	33	1.88
78474--78529	19	2.9	19	89	2	85	37	14	17	30	1.90
78763--78822	21	2.9	21	92	2	95	26	10	11	51	1.69
79561--79599	11	3.5	11	89	3	60	74	0	23	2	0.94
80528--81102	161	3.5	161	85	6	784	38	10	10	40	1.75
80968--81215	129	1.9	127	85	1	343	32	10	12	44	1.76
81872--82437	158	3.6	157	77	7	549	22	18	21	37	1.94
81901--82493	314	1.9	313	80	3	683	22	16	21	38	1.93
85537--85562	13	2.0	13	100	0	52	30	15	15	38	1.88
85517--85580	32	2.0	33	90	3	103	29	12	14	43	1.81
85611--85684	20	3.7	20	82	8	78	29	17	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86177--86243	37	1.9	35	88	11	102	29	25	11	32	1.92
86701--86726	13	2.0	13	100	0	52	30	15	15	38	1.88
86681--86744	32	2.0	33	87	3	94	28	14	17	40	1.88
87074--87143	35	2.0	35	100	0	140	40	25	5	28	1.78
88528--88552	13	1.9	13	100	0	50	32	16	16	36	1.90
91748--91814	37	1.9	35	88	11	102	29	25	11	32	1.92
92272--92329	13	4.0	13	76	23	62	29	15	17	37	1.90
92252--92347	32	3.0	32	93	1	156	28	14	17	39	1.89
92285--92347	19	3.6	19	76	24	84	28	15	19	36	1.92
92677--92746	35	2.0	35	100	0	140	40	25	5	28	1.78
94425--94467	20	2.1	20	82	4	50	9	27	44	18	1.80
94898--94948	13	3.9	13	97	0	93	31	15	19	33	1.93
96884--96914	15	2.1	15	93	0	53	12	22	16	48	1.80
102247--102292	10	3.7	13	80	19	62	32	23	15	28	1.95
104426--104494	34	2.0	35	97	2	131	27	5	26	40	1.78
104829--104905	31	2.5	31	78	17	90	37	19	18	24	1.94
105346--105412	37	1.9	35	88	11	102	32	11	25	29	1.92
108614--108638	13	1.9	13	100	0	50	36	16	16	32	1.90
110022--110092	36	2.0	36	94	2	126	28	7	25	39	1.82
110438--110463	13	2.0	13	100	0	52	38	15	15	30	1.88
110420--110483	32	2.0	33	87	3	94	40	17	14	28	1.88

Tables:   1

The End!