genome.fa.s1468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1468
Parameters: 2 7 7 80 10 50 1000
Length:  51892

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--8338	476	17.6	475	82	4	9907	35	14	18	32	1.90
4--8344	952	8.8	949	89	2	12165	35	14	18	32	1.90
1410--7754	159	40.1	159	65	12	839	35	13	18	32	1.90
8619--8745	34	3.8	35	82	10	151	31	22	12	33	1.92
9335--9359	13	1.9	13	100	0	50	36	16	16	32	1.90
9317--9380	32	2.0	32	84	9	85	40	15	14	29	1.86
9471--9521	23	2.1	24	89	7	77	39	5	7	47	1.57
9732--10401	159	4.2	156	71	8	474	35	13	18	31	1.90
11963--12035	24	3.3	24	74	21	95	43	0	42	13	1.44
11984--12015	9	3.6	9	91	0	55	43	0	43	12	1.42
11954--12085	42	3.1	42	85	2	158	47	0	40	11	1.45
17395--18633	159	7.9	159	68	11	528	37	13	17	31	1.89
17021--18703	469	3.6	470	85	3	2071	37	13	17	31	1.89
22897--22965	33	2.1	32	86	10	95	39	17	11	31	1.85
24462--25889	472	3.0	472	82	5	1735	37	13	17	31	1.89
26492--27926	475	3.0	469	84	4	1720	36	13	18	31	1.89
30773--31720	476	2.0	476	84	2	1260	35	13	18	32	1.90
32399--33234	464	1.8	461	83	3	1135	37	13	18	31	1.89
34712--34861	19	8.7	19	70	27	113	36	11	15	36	1.83
34753--34873	13	7.9	13	67	28	53	34	12	16	36	1.86
34736--34898	32	5.1	32	91	0	265	34	12	15	36	1.85
34815--34874	13	4.2	13	73	22	57	33	13	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48882--48945	12	5.5	11	72	20	51	81	14	3	1	0.89
50356--50630	28	9.7	29	82	8	307	32	30	17	20	1.95
50369--50630	57	4.6	58	86	6	299	32	29	17	20	1.96
50694--50971	49	5.8	49	76	11	290	23	26	17	32	1.97
50730--50872	43	3.2	43	79	13	180	25	23	16	33	1.96
50634--50872	91	2.7	89	91	2	374	25	24	17	33	1.96
50776--50971	52	4.0	49	77	7	200	22	26	17	33	1.96
50779--50961	99	1.8	100	83	3	244	23	26	18	31	1.97
51685--51761	31	2.4	32	87	8	113	33	12	18	35	1.89

Tables:   1

The End!