genome.fa.s1471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1471
Parameters: 2 7 7 80 10 50 1000
Length:  59440

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5677--5728	11	4.7	11	80	15	63	86	5	7	0	0.70
5677--5736	21	2.8	21	87	10	77	85	8	6	0	0.76
5676--5730	12	4.8	12	73	13	53	87	5	7	0	0.68
5676--5748	23	3.2	22	83	9	83	83	10	5	0	0.80
7185--7358	29	6.0	29	84	4	226	27	30	16	25	1.97
7179--7349	86	2.0	86	88	2	254	28	30	16	23	1.96
7334--7518	34	5.7	34	76	10	179	18	34	13	32	1.90
7244--7549	61	5.0	61	79	8	253	21	33	15	29	1.94
7585--7813	32	7.3	32	91	4	328	28	35	19	16	1.93
7806--8126	49	6.7	49	80	9	369	27	23	17	32	1.96
7801--8082	92	3.1	92	93	0	465	26	24	17	31	1.97
8139--8265	67	1.9	68	85	1	175	23	24	12	39	1.89
8206--8400	53	3.7	52	78	4	158	24	25	15	34	1.94
7987--8483	227	2.2	224	84	5	628	24	24	14	36	1.93
8258--8400	55	2.7	52	76	4	151	24	25	15	34	1.94
11835--13024	476	2.5	475	86	3	1642	37	13	17	31	1.89
13824--13878	20	2.8	20	91	0	92	34	10	20	34	1.87
16446--16484	15	2.5	16	83	4	53	33	28	2	35	1.71
20863--20894	15	2.1	15	94	0	55	28	28	0	43	1.55
22608--22672	20	3.6	20	63	26	54	41	15	13	29	1.86
24847--28188	475	7.2	476	84	4	3959	36	14	18	31	1.90
24856--27327	159	15.7	157	65	14	645	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28191--29744	474	3.3	474	85	2	2021	35	14	18	30	1.91
30732--30785	27	2.0	27	96	0	99	25	20	31	22	1.98
32979--33053	20	3.8	20	82	3	89	44	13	10	32	1.78
34643--34700	29	2.0	29	100	0	116	37	17	10	34	1.84
33590--36583	476	6.3	475	79	7	2833	37	13	18	30	1.90
37021--40596	158	22.7	159	65	13	538	36	13	18	31	1.90
36578--41552	476	10.5	475	82	2	5749	36	13	18	31	1.90
48276--48403	52	2.5	52	96	1	240	31	17	17	34	1.93
48391--48444	21	2.7	20	82	8	65	38	12	18	29	1.88
48464--48530	33	2.0	33	85	0	89	41	13	10	34	1.79
49457--50710	49	25.7	49	87	2	1733	30	17	26	25	1.97
50710--50882	33	5.2	33	89	4	269	20	17	33	28	1.95
50703--50882	67	2.8	66	89	5	269	20	17	33	28	1.95
50864--51686	105	8.0	105	82	9	831	32	11	34	20	1.89
50884--51686	34	23.6	34	84	8	821	33	11	34	20	1.89
51153--51212	27	2.2	27	87	0	84	28	15	38	18	1.91
51671--51753	31	2.7	31	98	0	157	21	19	31	27	1.97
52696--52726	12	2.6	12	100	0	62	0	0	6	93	0.35

Tables:   1

The End!