Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1472
Parameters: 2 7 7 80 10 50 1000
Length:  78153

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
565--606
18
2.4
17
84
7
57
61
2
11
23
1.42
1834--2106
141
1.9
139
87
4
397
40
8
7
43
1.63
3615--3660
20
2.3
20
85
14
60
65
0
2
32
1.05
8181--8298
52
2.3
52
89
2
175
45
10
15
28
1.78
28607--28649
18
2.4
18
88
7
61
55
0
2
41
1.12
28838--28871
15
2.1
16
89
10
52
47
0
2
50
1.16
30976--31014
8
4.9
8
84
9
53
20
0
0
79
0.73
30977--31006
9
3.4
9
95
4
53
16
0
0
83
0.65
31006--31053
18
2.8
18
84
12
57
37
14
0
47
1.44
31817--31891
30
2.5
30
77
16
75
32
4
16
48
1.64
31840--31902
30
2.1
30
82
8
76
41
0
14
44
1.45
32841--32902
16
3.6
17
73
12
56
61
3
0
35
1.12
33029--33064
17
2.2
17
95
5
65
61
0
0
38
0.96
37251--37301
10
5.1
10
81
9
50
66
0
5
27
1.14
37252--37300
26
2.0
24
84
8
62
69
0
6
24
1.11
38398--38448
23
2.3
23
86
6
70
49
0
0
50
1.00
38802--38859
22
2.7
21
73
7
55
36
1
0
62
1.06
39910--39954
15
2.9
17
71
21
53
53
0
0
46
1.00
40310--40370
31
1.9
33
83
12
83
29
1
4
63
1.24
40930--40998
32
2.2
32
86
0
93
40
0
1
57
1.07
40988--41033
12
3.9
12
81
16
60
26
2
0
71
0.97
40905--41024
40
3.0
40
69
21
99
35
0
0
64
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45226--45275
20
2.4
21
90
3
75
48
12
14
26
1.78
49949--50340
28
13.8
28
83
5
421
21
16
30
31
1.95
49949--50340
113
3.4
112
82
6
457
21
16
30
31
1.95
49981--50343
141
2.6
139
82
5
433
21
16
30
30
1.95
51572--51665
1
94.0
1
72
0
53
2
2
11
84
0.81
51572--51665
8
10.6
8
76
17
71
2
2
11
84
0.81
51572--51664
21
4.3
21
74
20
68
2
2
11
83
0.82
54375--54399
13
1.9
13
100
0
50
36
16
16
32
1.90
54471--54495
13
1.9
13
100
0
50
32
16
16
36
1.90
70643--70873
116
2.0
116
93
0
390
31
18
16
34
1.93
78030--78083
24
2.4
21
79
11
54
31
5
3
59
1.38

Tables:   1

The End!