Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1473
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 155800
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2093 original size:61 final size:62
Alignment explanation
Indices: 2024--2167 Score: 227
Period size: 62 Copynumber: 2.3 Consensus size: 62
2014 CCCTTTTAGC
* * * **
2024 TTTAGTCCTCGAAGAGTAGGATGCC-TTTTTCTTTTAAAGCCCACATGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTTATTTTAAAGCCCACACAAGTTGGTGGCACCT
*
2085 TTTAGTCCTCAAAGAGCAAGATGCCTTTTTTATTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTTATTTTAAAGCCCACACAAGTTGGTGGCACCT
2147 TTTAGTCCTCAAAGAGCAGGA
1 TTTAGTCCTCAAAGAGCAGGA
2168 CGCATTTCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
61 22 0.29
62 53 0.71
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTTTATTTTAAAGCCCACACAAGTTGGTGGCACCT
Found at i:3190 original size:20 final size:20
Alignment explanation
Indices: 3145--3200 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
3135 CATAAGTAAA
3145 TGTATCGATACATGCTTATAAT
1 TGTATCGATACAT--TTATAAT
* *
3167 TGTATCGATACATTTCTCAT
1 TGTATCGATACATTTATAAT
3187 TGTATCGATACATT
1 TGTATCGATACATT
3201 CTAGGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 19 0.59
22 13 0.41
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTTATAAT
Found at i:5684 original size:79 final size:77
Alignment explanation
Indices: 5555--6113 Score: 447
Period size: 79 Copynumber: 7.2 Consensus size: 77
5545 TTTCTTTCCA
* * * * *
5555 AAAATA-TCAATTTTTCGTCTTGGGGATATTCCAACCCCGTTATTTCCGAGGGGATACTCCCACC
1 AAAATATTAAATTTTT-ATCTTGGGGATACT-CAACCCCGTTATTTCTGAGGGGATACTCCAACC
5619 CCGCTTTTATTTTC
64 CCGCTTTTATTTTC
* * *
5633 AAAACATTAAATTTTTCATCTTGGGGATACTCCAACCTCGTTATTT-TCGAGGGCATACTCCAAC
1 AAAATATTAAATTTTT-ATCTTGGGGATACT-CAACCCCGTTATTTCT-GAGGGGATACTCCAAC
** *
5697 CCCATTTTTATTTCC
63 CCCGCTTTTATTTTC
* *
5712 AAAATATTAAAATTTTTATCTTGGGGATACTCAAGCCCCATTAATTCTGAGGGGATACTCCAACC
1 AAAATATT-AAATTTTTATCTTGGGGATACTCAA-CCCCGTTATTTCTGAGGGGATACTCCAACC
**
5777 TTGCTTTTATTTTC
64 CCGCTTTTATTTTC
* * *
5791 AAAATATTAAATTTTTTATCTCGGGGATACT--A-CTCGTTATTTCTAAGGGGATACTCCAACCC
1 AAAATATTAAA-TTTTTATCTTGGGGATACTCAACCCCGTTATTTCTGAGGGGATACTCCAACCC
*
5853 CGTTTTTATTTTC
65 CGCTTTTATTTTC
* * * * * * * *
5866 AAAATATTAAATTTTTATCTTAGGGATATTCTAACCCCATCAATTCTTAGGGGACACTCTAACCC
1 AAAATATTAAATTTTTATCTTGGGGATACTC-AACCCCGTTATTTCTGAGGGGATACTCCAACCC
*
5931 CGTTTTTA-TTTC
65 CGCTTTTATTTTC
*** * * ** * * * *
5943 TAAAATGCCAAAATTTTCATCTT-GGGATATTCCAACCCTATCAATTCTAAGGGGATACTCTAAC
1 -AAAAT-ATTAAATTTTTATCTTGGGGATACT-CAACCCCGTTATTTCTGAGGGGATACTCCAAC
* * *
6007 TCCGTTTTTATTTCC
63 CCCGCTTTTATTTTC
* * * * *
6022 AAAGTATTAAAGTTTTT-TC-AGGGG-TACTCTAATCCCATTATTTCTAAGGGGATACTCCAACC
1 AAAATATTAAA-TTTTTATCTTGGGGATACTC-AACCCCGTTATTTCTGAGGGGATACTCCAACC
*** *
6084 CTATTTTTA-TTCC
64 CCGCTTTTATTTTC
6097 AAAAATATTAAATTTTT
1 -AAAATATTAAATTTTT
6114 CTTCCATTTT
Statistics
Matches: 399, Mismatches: 64, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
74 16 0.04
75 57 0.14
76 46 0.12
77 14 0.04
78 100 0.25
79 157 0.39
80 9 0.02
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (77 bp):
AAAATATTAAATTTTTATCTTGGGGATACTCAACCCCGTTATTTCTGAGGGGATACTCCAACCCC
GCTTTTATTTTC
Found at i:6069 original size:232 final size:232
Alignment explanation
Indices: 5594--6114 Score: 565
Period size: 232 Copynumber: 2.2 Consensus size: 232
5584 TCCAACCCCG
** * * * *
5594 TTATTTCCGAGGGGATACTCCCACCCCGCTTTTATTTTCAAAACATTAAATTTTTCATCTTGGGG
1 TTATTTCTAAGGGGATACTCCAACCCCGTTTTTATTTTCAAAATATTAAATTTTTCATCTTAGGG
* * * * **
5659 ATACTCCAACCTCGTTATTTTCGAGGGCATACTCCAACCCCATTTTTATTTCCAAAATATTAAAA
66 ATACTCCAACCCCATAATTTTC-AGGGCACACTCCAACCCCATTTTTATTTCCAAAATACCAAAA
* * * *
5724 TTTTTATCTTGGGGATACTCAAGCCCCATTAATTCTGAGGGGATACTCCAACCTTGCTTTTATTT
130 TTTTCATCTTGGGGATACTCAAGCCCCATCAATTCTAAGGGGATACTCCAACCTCGCTTTTATTT
* * * * *
5789 TCAAAATATTAAATTTTTTATCTCGGGGATACTACTCG
195 CCAAAATATTAAAGTTTTTATCTAGGGGATACTACCCA
5827 TTATTTCTAAGGGGATACTCCAACCCCGTTTTTATTTTCAAAATATTAAATTTTT-ATCTTAGGG
1 TTATTTCTAAGGGGATACTCCAACCCCGTTTTTATTTTCAAAATATTAAATTTTTCATCTTAGGG
* * * * * * *
5891 ATATTCTAACCCCATCAATTCTT-AGGGGACACTCTAACCCCGTTTTTATTTCTAAAATGCCAAA
66 ATACTCCAACCCCAT-AATT-TTCAGGGCACACTCCAACCCCATTTTTATTTCCAAAATACCAAA
* * * *
5955 ATTTTCATCTT-GGGATATTCCAA-CCCTATCAATTCTAAGGGGATACTCTAA-CTCCGTTTTTA
129 ATTTTCATCTTGGGGATACT-CAAGCCCCATCAATTCTAAGGGGATACTCCAACCT-CGCTTTTA
*
6017 TTTCCAAAGTATTAAAGTTTTT-TC-AGGGG-TACTCTAATCCCA
192 TTTCCAAAATATTAAAGTTTTTATCTAGGGGATA--CT-A-CCCA
** *
6059 TTATTTCTAAGGGGATACTCCAACCCTATTTTTA-TTCCAAAAATATTAAATTTTTC
1 TTATTTCTAAGGGGATACTCCAACCCCGTTTTTATTTTC-AAAATATTAAATTTTTC
6115 TTCCATTTTT
Statistics
Matches: 242, Mismatches: 36, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
228 2 0.01
229 4 0.02
230 6 0.02
231 60 0.25
232 115 0.48
233 53 0.22
234 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (232 bp):
TTATTTCTAAGGGGATACTCCAACCCCGTTTTTATTTTCAAAATATTAAATTTTTCATCTTAGGG
ATACTCCAACCCCATAATTTTCAGGGCACACTCCAACCCCATTTTTATTTCCAAAATACCAAAAT
TTTCATCTTGGGGATACTCAAGCCCCATCAATTCTAAGGGGATACTCCAACCTCGCTTTTATTTC
CAAAATATTAAAGTTTTTATCTAGGGGATACTACCCA
Found at i:6123 original size:33 final size:33
Alignment explanation
Indices: 6086--6150 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
6076 CTCCAACCCT
6086 ATTTTTATTCCAAAAATATTAAATTTTTCTTCC
1 ATTTTTATTCCAAAAATATTAAATTTTTCTTCC
6119 ATTTTTATTCCAAAAATATTAAATTTTTCTTC
1 ATTTTTATTCCAAAAATATTAAATTTTTCTTC
6151 TCGAGGATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (33 bp):
ATTTTTATTCCAAAAATATTAAATTTTTCTTCC
Found at i:6131 original size:154 final size:154
Alignment explanation
Indices: 5682--6103 Score: 372
Period size: 154 Copynumber: 2.7 Consensus size: 154
5672 GTTATTTTCG
* * *
5682 AGGGCATACTCCAACCCCATTTTTATTTCCAAAATATTAAAATTTTTATCTTGGGGATACTC-AA
1 AGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT-AAATTTTTATC-TAGGGATACTCTAA
* * * **** * ** * *
5746 GCCCCATTAATTCTGAGGGGATACTCCAACCTTGCTTTTATTTTC-AAAATATTAAATTTTTTAT
64 -CCCCATCAATTCTAAGGGGACACTCCAACCCCATTTTTA-TTCCAAAAATACCAAAATTTTCAT
* ** * * * *
5810 CTCGGGGA-TACTACTCGT-T-ATTTCTA
127 CTTGGATATTCCAAC-CCTATCAATTCTA
* *
5836 AGGGGATACTCCAACCCCGTTTTTATTTTCAAAATATTAAATTTTTATCTTAGGGATATTCTAAC
1 AGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATTAAATTTTTATC-TAGGGATACTCTAAC
* * * * * *
5901 CCCATCAATTCTTAGGGGACACTCTAACCCCGTTTTTATTTCTAAAATGCCAAAATTTTCATCTT
65 CCCATCAATTCTAAGGGGACACTCCAACCCCATTTTTATTCCAAAAATACCAAAATTTTCATCTT
5966 GGGATATTCCAACCCTATCAATTCTA
130 -GGATATTCCAACCCTATCAATTCTA
* * * * *
5992 AGGGGATACTCTAACTCCGTTTTTATTTCCAAAGTATTAAAGTTTTT-TC-AGGGGTACTCTAAT
1 AGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATTAAA-TTTTTATCTAGGGATACTCTAAC
* * * *
6055 CCCATTATTTCTAAGGGGATACTCCAACCCTATTTTTATTCCAAAAATA
65 CCCATCAATTCTAAGGGGACACTCCAACCCCATTTTTATTCCAAAAATA
6104 TTAAATTTTT
Statistics
Matches: 220, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
152 4 0.02
153 69 0.31
154 92 0.42
155 5 0.02
156 45 0.20
157 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (154 bp):
AGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATTAAATTTTTATCTAGGGATACTCTAACC
CCATCAATTCTAAGGGGACACTCCAACCCCATTTTTATTCCAAAAATACCAAAATTTTCATCTTG
GATATTCCAACCCTATCAATTCTA
Found at i:7779 original size:28 final size:28
Alignment explanation
Indices: 7747--8167 Score: 369
Period size: 28 Copynumber: 14.6 Consensus size: 28
7737 AGCCCATAAA
**
7747 TAGTGGCACCCTTTCAAAGCCCATGAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
7775 TAGTGGCACCCTTTTCACAAGCCCGCACAAGT
1 TAGTGGCACCC-TTTCA-AAG-CC-CACAAGT
* * *
7807 CAGTGGCACCCTTTTAAAGCTCACAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* ** *
7835 TAGTGGCACCCTTTTAAAGCTTATAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* *
7863 TAGTGGCACCCTTTTAAAGCCCACGAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* *
7891 CAGTGGCACCCTTTCAAAGCCCATAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* *
7919 TAGTGGCACGCTCTCAAAGCCCACAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
** *
7947 CGGTGGCAACCTTTCTCAAAGCCCACAAGT
1 TAGTGGC-ACCCTT-TCAAAGCCCACAAGT
* *
7977 TAGTGGCACCTTTTTAAAGCCCACAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* * * *
8005 TGGTGGCACCTTTTTAAAGCCCATAAGT
1 TAGTGGCACCCTTTCAAAGCCCACAAGT
* *
8033 TAATGGCA-CCTTCTCAAAGCCCACAACT
1 TAGTGGCACCCTT-TCAAAGCCCACAAGT
* * *
8061 TAAATGGCACCCTTTTAAAGTCCACAAGT
1 T-AGTGGCACCCTTTCAAAGCCCACAAGT
* * **
8090 CAGTGGCACCCTCTCTAAAGTGCACAAGT
1 TAGTGGCACCCTTTC-AAAGCCCACAAGT
* * * *
8119 TGGTAGTATCCCCTCTT-AAAGCCCATAAGT
1 TAGTGGCA--CCCT-TTCAAAGCCCACAAGT
*
8149 TAGTGGCAACCCTCTCAAA
1 TAGTGGC-ACCCTTTCAAA
8168 AAGCCTACAC
Statistics
Matches: 322, Mismatches: 56, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
27 3 0.01
28 191 0.59
29 57 0.18
30 44 0.14
31 11 0.03
32 16 0.05
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (28 bp):
TAGTGGCACCCTTTCAAAGCCCACAAGT
Found at i:7896 original size:56 final size:56
Alignment explanation
Indices: 7728--8167 Score: 416
Period size: 56 Copynumber: 7.7 Consensus size: 56
7718 AGTAAAGTAA
* **
7728 CCTTCTTAAAGCCCATAA-ATAGTGGCACCCTTTCAAAGCCCATGAGTTAGTGGCAC
1 CCTT-TTAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
* * * *
7784 CCTTTTCACAAGCCCGCACAAGTCAGTGGCACCCTTTTAAAGCTCACAAGTTAGTGGCAC
1 CCTTTT-A-AAG-CC-CATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
** * * *
7844 CCTTTTAAAGCTTATAAGTTAGTGGCACCCTTTTAAAGCCCACGAGTCAGTGGCAC
1 CCTTTTAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
* * * ** *
7900 CCTTTCAAAGCCCATAAGTTAGTGGCACGCTCTCAAAGCCCACAAGTCGGTGGCAA
1 CCTTTTAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
* * * *
7956 CCTTTCTCAAAGCCCACAAGTTAGTGGCACCTTTTTAAAGCCCACAAGTTGGTGGCAC
1 CCTTT-T-AAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
* * * *
8014 CTTTTTAAAGCCCATAAGTTAATGGCA-CCTTCTCAAAGCCCACAACTTAAATGGCAC
1 CCTTTTAAAGCCCATAAGTTAGTGGCACCCTT-TCAAAGCCCACAAGTT-AGTGGCAC
* * * * ** * * *
8071 CCTTTTAAAGTCCACAAGTCAGTGGCACCCTCTCTAAAGTGCACAAGTTGGTAGTATCC
1 CCTTTTAAAGCCCATAAGTTAGTGGCACCCTTTC-AAAGCCCACAAGTTAGTGGCA--C
* *
8130 CCTCTTAAAGCCCATAAGTTAGTGGCAACCCTCTCAAA
1 CCTTTTAAAGCCCATAAGTTAGTGGC-ACCCTTTCAAA
8168 AAGCCTACAC
Statistics
Matches: 314, Mismatches: 56, Indels: 25
0.79 0.14 0.06
Matches are distributed among these distances:
55 5 0.02
56 128 0.41
57 38 0.12
58 66 0.21
59 31 0.10
60 46 0.15
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (56 bp):
CCTTTTAAAGCCCATAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAC
Found at i:7993 original size:114 final size:113
Alignment explanation
Indices: 7726--8239 Score: 428
Period size: 114 Copynumber: 4.4 Consensus size: 113
7716 CTAGTAAAGT
* * * **
7726 AACC-TTCTTAAAGCCCATAA-ATAGTGGCACCCTTTCAAAGCCCATGAGTTAGTGGCACCCTTT
1 AACCTTTC-TAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCC-TT
* * * * * *
7789 TCACAAGCCCGCACAAGTCAGTGGCACCCTTTTAAAGCTCACAAGTTAGTGGC
64 TCA-AAG-CC-CATAAGTTAGTGGCACCCTCTCAAAGCCCACAAGTCAGTGGC
* ** * * *
7842 ACCCTTT-TAAAGCTTATAAGTTAGTGGCACCCTTTTAAAGCCCACGAGTCAGTGGCACCCTTTC
1 AACCTTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCCTTTC
* *
7906 AAAGCCCATAAGTTAGTGGCACGCTCTCAAAGCCCACAAGTCGGTGGC
66 AAAGCCCATAAGTTAGTGGCACCCTCTCAAAGCCCACAAGTCAGTGGC
* * *
7954 AACCTTTCTCAAAGCCCACAAGTTAGTGGCACCTTTTTAAAGCCCACAAGTTGGTGGCACCTTTT
1 AACCTTTCT-AAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCCTTT
* * * * * *
8019 TAAAGCCCATAAGTTAATGGCACCTTCTCAAAGCCCACAACTTAAATGGC
65 CAAAGCCCATAAGTTAGTGGCACCCTCTCAAAGCCCACAA-GTCAGTGGC
* * * * ** * * *
8069 ACCCTTT-TAAAGTCCACAAGTCAGTGGCACCCTCTCTAAAGTGCACAAGTTGGTAGTATCCCCT
1 AACCTTTCTAAAGCCCACAAGTTAGTGGCACCCT-TTTAAAGCCCACAAGTTAGTGGCA--CCCT
* *
8133 CTT-AAAGCCCATAAGTTAGTGGCAACCCTCTCAAAAAGCCTACACAAGTCGGTGGT
63 -TTCAAAGCCCATAAGTTAGTGGC-ACCCTCTC--AAAGCC--CACAAGTCAGTGGC
* *
8189 AACCCTCTCTAAAGCCTACACAAG-TCGATGGCAACCCTTTTAAAGCCCACA
1 AA-CCTTTCTAAAGCC--CACAAGTTAG-TGGC-ACCCTTTTAAAGCCCACA
8240 CAAGTCGGTG
Statistics
Matches: 321, Mismatches: 57, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
112 40 0.12
113 25 0.08
114 106 0.33
115 26 0.08
116 61 0.19
117 11 0.03
119 6 0.02
120 5 0.02
121 9 0.03
122 6 0.02
123 1 0.00
124 20 0.06
125 5 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (113 bp):
AACCTTTCTAAAGCCCACAAGTTAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCACCCTTTC
AAAGCCCATAAGTTAGTGGCACCCTCTCAAAGCCCACAAGTCAGTGGC
Found at i:8275 original size:65 final size:63
Alignment explanation
Indices: 8167--8291 Score: 178
Period size: 65 Copynumber: 2.0 Consensus size: 63
8157 ACCCTCTCAA
* *
8167 AAAGCCTACACAAGTCGGTGGTAACCCTCTCTAAAGCCTACACAAGTCGATGGCAACCCTTTT
1 AAAGCCCACACAAGTCGGTGGTAACCCTCTCTAAAGCCTACACAAGTCGATGCCAACCCTTTT
* * * *
8230 AAAGCCCACACAAGTCGGTGGTATCCTTTCTTTGAAAGCCTACACAAGTCGGTGCCAACCCT
1 AAAGCCCACACAAGTCGGTGGTAACC-CTCTCT-AAAGCCTACACAAGTCGATGCCAACCCT
8292 CTCAAAAACC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 24 0.44
64 4 0.07
65 26 0.48
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (63 bp):
AAAGCCCACACAAGTCGGTGGTAACCCTCTCTAAAGCCTACACAAGTCGATGCCAACCCTTTT
Found at i:10902 original size:79 final size:79
Alignment explanation
Indices: 10819--11016 Score: 272
Period size: 79 Copynumber: 2.5 Consensus size: 79
10809 TCGAGGTTGA
* * *
10819 AGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTG-GAAAGTCAGTGCTTTAGAAA
1 AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAA-TCAATACTTTAGAAA
* * *
10883 TAAGGCCGGGGTTAG
65 TAAAGCCAGAGTTAG
* * * *
10898 AGTATCCCCACGAAAATAACGAGGTTGGAATATCCCCGATTGTGAGAAATCAATATTTTAGAAAT
1 AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATACTTTAGAAAT
*
10963 AAAGCCAGAGTTGG
66 AAAGCCAGAGTTAG
*
10977 AGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGAT
1 AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
11017 GAAATAATGG
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 99 0.96
80 4 0.04
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (79 bp):
AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAGAAATCAATACTTTAGAAAT
AAAGCCAGAGTTAG
Found at i:11005 original size:28 final size:28
Alignment explanation
Indices: 10972--11039 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
10962 TAAAGCCAGA
10972 GTTGGAGTATCCCCTCGA-AAATAACAGG
1 GTTGGAGTATCCCC-CGAGAAATAACAGG
**
11000 GTTGGAGTAT-CCCCGATGAAATAATGGG
1 GTTGGAGTATCCCCCGA-GAAATAACAGG
11028 GTTGGAGTATCC
1 GTTGGAGTATCC
11040 TCGATTGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 3 0.09
27 3 0.09
28 28 0.80
29 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (28 bp):
GTTGGAGTATCCCCCGAGAAATAACAGG
Found at i:11009 original size:107 final size:107
Alignment explanation
Indices: 10891--11090 Score: 260
Period size: 107 Copynumber: 1.9 Consensus size: 107
10881 AATAAGGCCG
*
10891 GGGTTAGAGTATCCCC-ACGAAAATAACGAGGTTGGAATATCCCCGATTGTGAGAAATCAA-TAT
1 GGGTTAGAGTATCCCCGACG-AAATAACGAGGTTGGAATATCCCCGATTGTGAAAAAT-AAGTAT
*
10954 TTTAGAAATAAAGCCAGAGTTGGAGTATCCCCTCGAAAATAACA
64 TTTAGAAATAAAACCAGAGTTGGAGTATCCCCTCGAAAATAACA
* * * * * * *
10998 GGGTTGGAGTATCCCCGATGAAATAATGGGGTTGGAGTATCCTCGATTGTGAAAAATAAGTGTTT
1 GGGTTAGAGTATCCCCGACGAAATAACGAGGTTGGAATATCCCCGATTGTGAAAAATAAGTATTT
* * *
11063 TGGAAATAAAATCGGAGTTGGAGTATCC
66 TAGAAATAAAACCAGAGTTGGAGTATCC
11091 TCGATTGTGG
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
106 2 0.03
107 75 0.95
108 2 0.03
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (107 bp):
GGGTTAGAGTATCCCCGACGAAATAACGAGGTTGGAATATCCCCGATTGTGAAAAATAAGTATTT
TAGAAATAAAACCAGAGTTGGAGTATCCCCTCGAAAATAACA
Found at i:11090 original size:51 final size:51
Alignment explanation
Indices: 11026--11141 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
11016 TGAAATAATG
* *
11026 GGGTTGGAGTATCCTCGATTGTGAAAAATAAGTGTTTTGGAAATAAAATC-
1 GGGTTGGAGTATCCTCGATTGTGAAAAATAAGTGTTTTAGAAATAAAACCA
* **
11076 GGAGTTGGAGTATCCTCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCA
1 GG-GTTGGAGTATCCTCGATTGTGAAAAATAAGTGTTTTAGAAATAAAACCA
11128 GGGTTGGAGTATCC
1 GGGTTGGAGTATCC
11142 CCTCGAAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
50 2 0.03
51 55 0.93
52 2 0.03
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (51 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATAAGTGTTTTAGAAATAAAACCA
Found at i:11216 original size:49 final size:50
Alignment explanation
Indices: 11155--11272 Score: 168
Period size: 51 Copynumber: 2.4 Consensus size: 50
11145 CGAAAAATAA
11155 CGGGGTTGGAGTATCCCCGATGGTGG-AATCGATGTTTT-GAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGGTGGAAATCGATGTTTTAG-AAATAAAAC
* * * *
11204 CGGGGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGGTGG-AAATCGATGTTTTAGAAATAAAAC
11255 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
11273 TTCGAAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
49 24 0.39
51 36 0.59
52 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (50 bp):
CGGGGTTGGAGTATCCCCGATGGTGGAAATCGATGTTTTAGAAATAAAAC
Found at i:11227 original size:129 final size:129
Alignment explanation
Indices: 10996--11303 Score: 419
Period size: 129 Copynumber: 2.4 Consensus size: 129
10986 TCGAAAATAA
* * *
10996 CAGGGTTGGAGTAT-CCC-CGATGAAATAATGGGGTTGGAGTATCCTCGATTGTGAAAAATAAGT
1 CAGGGTTGGAGTATCCCCTCGA--AAATAACGGGGTTGGAGTATCCCCGATGGTG-AAAATAAGT
* * * *
11059 GTTTTGGAAATAAAATCGGAGTTGGAGTATCCTCGATTGTGGAAAATTGGTGTTTTAGAAATAAA
63 GTTTTGAAAATAAAACCGGAGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAA
11124 AC
128 AC
* *
11126 CAGGGTTGGAGTATCCCCTCGAAAAATAACGGGGTTGGAGTATCCCCGATGGTG-GAAT-CGATG
1 CAGGGTTGGAGTATCCCCTCG-AAAATAACGGGGTTGGAGTATCCCCGATGGTGAAAATAAG-TG
*
11189 TTTTGAAAATAAAACCGGGGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAA
64 TTTTGAAAATAAAACCGGAGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAA
11254 C
129 C
* *
11255 CGGGGTTGGAGTATCCCCTTCG-AAATAACAGGGTTGGAGTATCCCCGAT
1 CAGGGTTGGAGTATCCCC-TCGAAAATAACGGGGTTGGAGTATCCCCGAT
11304 TATTTAAAAT
Statistics
Matches: 161, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
128 27 0.17
129 83 0.52
130 17 0.11
131 31 0.19
132 2 0.01
133 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (129 bp):
CAGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGGTGAAAATAAGTGTT
TTGAAAATAAAACCGGAGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAAC
Found at i:11301 original size:79 final size:78
Alignment explanation
Indices: 11206--11412 Score: 245
Period size: 80 Copynumber: 2.6 Consensus size: 78
11196 AATAAAACCG
* ** *
11206 GGGTAGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAACAGGGGTTGGAGTATCC
11271 CCTTC-GAAATAAC
66 CC-TCAGAAATAAC
* ** * * * *
11284 AGGGTTGGAGTATCCCCGATTATTTAAAATTAGTGCTTTGAAAAATAAAACAGGGGTTTGAGTAT
1 -GGGTTGGAGTATCCCCGATTGTAAAAAATTGGTG-TTTTAGAAATAAAACAGGGGTTGGAGTAT
*
11349 TCCCTCAGAAATAAC
64 CCCCTCAGAAATAAC
* *
11364 GAGGTTGGAGTATCCCTGATTGTAAAAAATTGGTGTTTTGGAAATAAAA
1 G-GGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAA
11413 ACTTGAATGA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 43 0.40
80 64 0.60
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAGAAATAAAACAGGGGTTGGAGTATCC
CCTCAGAAATAAC
Found at i:14510 original size:42 final size:40
Alignment explanation
Indices: 14464--14649 Score: 108
Period size: 41 Copynumber: 4.4 Consensus size: 40
14454 CTTGGGGACT
14464 AAGGAAAAAAGGAAATAAAATGCATCATCCCCTTTGGAGACA
1 AAGGAAAAAAGGAAATAAAATGCATCAT-CCCTTT-GAGACA
* ** **
14506 AAGG-AAAAACGAAACT-AAATGTGTCATGCTTTTTGAGGACA
1 AAGGAAAAAAGGAAA-TAAAATGCATCAT-CCCTTTGA-GACA
* * * * *
14547 AAGG-AAAAAGGAGAATAAAGTACGTCTTACTCTTTGAGAACTA
1 AAGGAAAAAAGGA-AATAAAATGCATCAT-CCCTTTGAG-AC-A
* * *
14590 GAAGGGAAAAGAAGGAAATGAAGTGCATCATGCTCTTTGAGGACA
1 -AA-GGAAAA-AAGGAAATAAAATGCATCAT-CCCTTTGA-GACA
14635 AAGGAAAAAAGGAAA
1 AAGGAAAAAAGGAAA
14650 AGACATCCTG
Statistics
Matches: 115, Mismatches: 18, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
40 2 0.02
41 39 0.34
42 30 0.26
43 7 0.06
44 4 0.03
45 3 0.03
46 24 0.21
47 6 0.05
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.19
Consensus pattern (40 bp):
AAGGAAAAAAGGAAATAAAATGCATCATCCCTTTGAGACA
Found at i:14763 original size:61 final size:61
Alignment explanation
Indices: 14678--15342 Score: 729
Period size: 61 Copynumber: 11.1 Consensus size: 61
14668 GGTAAAGGAG
* * * * *
14678 AAAAGGAAAAGGCATCCCATTCTTTGAGGACTGAAAAGCGCCACCAACTTCTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
14739 AAAAGGAAAATGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
14799 AAAAGGAAAAGGCGTCCTGCTCTTCGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
14860 ------AAAAGGCATCCTACTCTTTGAGGACTAGGAAA-TGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
* * *
14915 AAAAGGAAAAGGTGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
** * * *
14976 AAAAGGAAAAAACGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTAGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* ** * *
15037 AAAAAGAAAAAACGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGCGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
** * *
15099 ------AAAAGGCGT-CTACTCTTCAAGGACT-AAGAAATGCCACCAACTTATGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAA-AAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
15153 AAAAGGAAAAGACATCTTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTATGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
15214 AAAAAGAAAAGGTGTCCTATTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGACTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
15275 AAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAGCTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
*
15337 GAAAGG
1 AAAAGG
15343 CATCCTGCTC
Statistics
Matches: 518, Mismatches: 63, Indels: 45
0.83 0.10 0.07
Matches are distributed among these distances:
53 2 0.00
54 23 0.04
55 59 0.11
56 11 0.02
60 63 0.12
61 304 0.59
62 55 0.11
63 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (61 bp):
AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:15029 original size:177 final size:179
Alignment explanation
Indices: 14684--15342 Score: 761
Period size: 177 Copynumber: 3.7 Consensus size: 179
14674 GGAGAAAAGG
* * * *
14684 AAAAGGCATCCCATTCTTTGAGGACT-GAAAAGCGCCACCAACTTCTGTGGGCTTTAAAAGGAAA
1 AAAAGGCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* * * *
14748 ATGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGC
66 AGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAC
* *
14812 GTCCTGCTCTTCGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT-
131 GTCCTGCTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTA
*
14860 AAAAGGCATCCTACTCTTTGAGGACTAGGAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 AAAAGGCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* * *
14924 AGGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAC
66 AGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAC
*
14989 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTTA
131 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA
* * * *
15038 AAAAGAAAAAACGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGCGGGCTTT----
1 AAAAG-----GCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
** * *
15099 --AAAAGGCGT-CTACTCTTCAAGGACTAAGAA-ATGCCACCAACTTATGTGGGCTTTAAAAGGA
61 GGAAAAGGCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * * *
15160 AAAGACATCTTACTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAAA
125 AAAGACGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT----A
** * * * * *
15219 GAAAAGGTGTCCTATTCTTTGAGGA-TTGGAAGGTGCCACCAACTTGTGTGGACTTTAAAAGGAA
1 -AAAAGGCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA
* * * *
15283 AAGGTGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAGG
65 AAGGCGTCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
15343 CATCCTGCTC
Statistics
Matches: 412, Mismatches: 46, Indels: 42
0.82 0.09 0.08
Matches are distributed among these distances:
176 101 0.25
177 190 0.46
178 18 0.04
181 1 0.00
182 15 0.04
183 39 0.09
184 48 0.12
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (179 bp):
AAAAGGCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
AGGCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGAC
GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTA
Found at i:15136 original size:238 final size:237
Alignment explanation
Indices: 14678--15364 Score: 957
Period size: 238 Copynumber: 2.9 Consensus size: 237
14668 GGTAAAGGAG
* * * * * *
14678 AAAAGGAAAAGGCATCCCATTCTTTGAGGACT-GAAAAGCGCCACCAACTTCTGTGGGCTTTAAA
1 AAAAGGAAAAGACATCCTACTCTTTGAGGACTAG-AAGGTGCCACCAACTTATGTGGGCTTTAAA
* *
14742 AGGAAAATGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAA
65 AGGAAAAAGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGT-GGCTTTAAAAGGAA
*
14807 AAGGCGTCCTGCTCTTCGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
129 AAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
** * *
14871 TACTCTTTGAGGACTAGGAAATGCCACCAACTTGTGTGGGCTTT
194 TACTCTTCAAGGACTAAGAAATGCCACCAACTTATGTGGGCTTT
*** * *
14915 AAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGACATCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAA
* *
14980 GGAAAAAACGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGAA
66 GGAAAAAGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGT-GGCTTTAAAAGGAA
** * *
15045 AAAACGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGCGGGCTTTAAAAGGCGT-C
129 AAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
15109 TACTCTTCAAGGACTAAGAAATGCCACCAACTTATGTGGGCTTT
194 TACTCTTCAAGGACTAAGAAATGCCACCAACTTATGTGGGCTTT
*
15153 AAAAGGAAAAGACATCTTACTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAA
1 AAAAGGAAAAGACATCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAA
* * * ** *
15218 AGAAAAGGTGTCCTATTCTTTGAGGATTGGAAGGTGCCACCAACTTGTGTGGACTTTAAAAGGAA
66 GGAAAAAGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGG-CTTTAAAAGGAA
* * * *
15283 AAGGTGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCC
129 AAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCC
* **
15348 TGCTCTTTGAGGACTAA
194 TACTCTTCAAGGACTAA
15365 AAGGTGAAAG
Statistics
Matches: 397, Mismatches: 48, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
237 83 0.21
238 263 0.66
239 51 0.13
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (237 bp):
AAAAGGAAAAGACATCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTATGTGGGCTTTAAAA
GGAAAAAGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGCTTTAAAAGGAAAA
GGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTA
CTCTTCAAGGACTAAGAAATGCCACCAACTTATGTGGGCTTT
Found at i:15387 original size:95 final size:97
Alignment explanation
Indices: 15288--15477 Score: 242
Period size: 95 Copynumber: 1.9 Consensus size: 97
15278 AGGAAAAGGT
* * * *
15288 GTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAGCTTGTGTGGGCTTT-GA-AAGGCATCCTGC
1 GTCCTACTCTTTAAAGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAGAGAAGGCATCATGC
15351 TCTTTGAGGACT-AAAAGGTGAAAGGAAAGAGC
66 TCTTTGAGGACTGAAAA-GTGAAAGGAAAGAGC
* * * *
15383 GTCCTGCTTTTTAAAGACTGGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
1 GTCCTACTCTTTAAAGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT---A-GAGAAGGCATC
15448 ATGCTCTTTGAGGACTGAAAAGTGAAAGGA
62 ATGCTCTTTGAGGACTGAAAAGTGAAAGGA
15478 GAAAGTTTAG
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
95 43 0.54
100 2 0.03
101 31 0.39
102 4 0.05
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (97 bp):
GTCCTACTCTTTAAAGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAGAGAAGGCATCATGC
TCTTTGAGGACTGAAAAGTGAAAGGAAAGAGC
Found at i:15557 original size:13 final size:13
Alignment explanation
Indices: 15539--15566 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15529 GAAAATGCAG
15539 CTTGTGTTCCTTA
1 CTTGTGTTCCTTA
15552 CTTGTGTTCCTTA
1 CTTGTGTTCCTTA
15565 CT
1 CT
15567 GGTTTATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.25, G:0.14, T:0.54
Consensus pattern (13 bp):
CTTGTGTTCCTTA
Found at i:16450 original size:1 final size:1
Alignment explanation
Indices: 16446--16512 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
16436 CTTAAGCAAG
* * * * * * * * *
16446 TTTTTTTCTTTTCTCTTTTTTTCTTTTTTGTTTTTTTGTTTTTTTTTGTTCTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
16511 TT
1 TT
16513 AAAAATAAGG
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.07, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:16466 original size:15 final size:14
Alignment explanation
Indices: 16445--16509 Score: 78
Period size: 15 Copynumber: 4.6 Consensus size: 14
16435 GCTTAAGCAA
16445 GTTTTTTTCTTTTCT
1 GTTTTTTTCTTTT-T
*
16460 CTTTTTTTCTTTTTT
1 GTTTTTTTC-TTTTT
*
16475 GTTTTTTTGTTTTT
1 GTTTTTTTCTTTTT
*
16489 -TTTTGTTCTTTTT
1 GTTTTTTTCTTTTT
16502 GTTTTTTT
1 GTTTTTTT
16510 TTTAAAAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
13 11 0.26
14 11 0.26
15 16 0.38
16 4 0.10
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.85
Consensus pattern (14 bp):
GTTTTTTTCTTTTT
Found at i:16487 original size:20 final size:20
Alignment explanation
Indices: 16445--16512 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 20
16435 GCTTAAGCAA
*
16445 GTTTTTTTCTT-TTCTCTTTT
1 GTTTTTTTTTTGTTCT-TTTT
*
16465 -TTTCTTTTTTGTT-TTTTT
1 GTTTTTTTTTTGTTCTTTTT
16483 G-TTTTTTTTTGTTCTTTTT
1 GTTTTTTTTTTGTTCTTTTT
16502 GTTTTTTTTTT
1 GTTTTTTTTTT
16513 AAAAATAAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 15 0.37
19 15 0.37
20 11 0.27
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (20 bp):
GTTTTTTTTTTGTTCTTTTT
Found at i:26936 original size:52 final size:52
Alignment explanation
Indices: 26787--26915 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
26777 CGAAATATGA
26787 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* * *
26839 AAATTTGCCTGTATGTATCAATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
26891 AAATTTGCCCGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
26916 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:27002 original size:19 final size:19
Alignment explanation
Indices: 26978--27062 Score: 92
Period size: 19 Copynumber: 4.7 Consensus size: 19
26968 TAGCTTACAT
26978 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
* *
26997 TGTATCGATACAACACCTA
1 TGTATCGATACAAAACTTA
27016 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
27029 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAAC-TTA
27049 TGTATCGATACAAA
1 TGTATCGATACAAA
27063 TCATTGAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
19 29 0.52
20 13 0.23
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:27034 original size:13 final size:13
Alignment explanation
Indices: 27016--27040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27006 ACAACACCTA
27016 TGTATCGATACAT
1 TGTATCGATACAT
27029 TGTATCGATACA
1 TGTATCGATACA
27041 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:27038 original size:32 final size:33
Alignment explanation
Indices: 26997--27060 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
26987 ACAAAACTTA
26997 TGTATCGATACAACAC-CTATGTATCGATACAT
1 TGTATCGATACAACACTCTATGTATCGATACAT
*
27029 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAACACTCTATGTATCGATACA
27061 AATCATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (33 bp):
TGTATCGATACAACACTCTATGTATCGATACAT
Found at i:31688 original size:79 final size:77
Alignment explanation
Indices: 31605--31847 Score: 227
Period size: 79 Copynumber: 3.1 Consensus size: 77
31595 TCGGGGTTGA
* * * *
31605 AGTATCCCCTCGAAAATAAAGGAGTTAGAGTATCCTCGATTGTGGAAAGTCGGTGCTTTAGAAAT
1 AGTATCCCCTCGAAAATAAAGG-GTTGGAGTATCCCCGATTGTGGAAA-TTGGTGTTTTAGAAAT
** *
31670 AAGGCCGGGGTCAG
64 AAAACCGGAGTCAG
** * ** *
31684 AGTAT-CCCGAGAAAATAAGAGGGTTGGAATATCCCCGATTGTGAGAAATTAATATTTTAGAAAT
1 AGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATTGTG-GAAATTGGTGTTTTAGAAAT
**
31748 AAAACCGGAGTTGG
64 AAAACCGGAGTCAG
* * * *
31762 AGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAAT
1 AGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATTGTG-GAAATTGGTGTTTTAGAAAT
* **
31827 AAAATCGGAGTTGG
64 AAAACCGGAGTCAG
31841 AGTATCC
1 AGTATCC
31848 TCGATTGTGG
Statistics
Matches: 134, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
78 54 0.40
79 80 0.60
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (77 bp):
AGTATCCCCTCGAAAATAAAGGGTTGGAGTATCCCCGATTGTGGAAATTGGTGTTTTAGAAATAA
AACCGGAGTCAG
Found at i:31853 original size:130 final size:128
Alignment explanation
Indices: 31694--32109 Score: 478
Period size: 131 Copynumber: 3.2 Consensus size: 128
31684 AGTATCCCGA
* * ** *
31694 GAAAATAAGA-GG-GTTGGAATATCCCCGATTGTGAGAAATTAATATTTTAGAAATAAAACCGGA
1 GAAAATAAAACGGAGTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTAGAAATAAAACCGG-
* * ** *
31757 GTTGGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTT
65 GTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTT
* *
31821 GGAAATAAAATCGGAGTTGGAGTATCCTCGATTGTG-GAAAATTGGTGTTTTAGAAATAAAACCA
1 GAAAATAAAA-CGGAGTTGGAGTATCCCCGATTGTGAG-AAATTGGTGTTTTAGAAATAAAACC-
* * * * * *
31885 GGGTTGGAGTATCCTTTCGAAAAATAACAAGGTTGGGGTATCCCCGATGGTGGAAAATCGATGTT
63 GGGTTGGAGTATCCTCTCG-AAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTT
31950 TT
127 TT
* * * * *
31952 GAAAATAAAACCGAGGTTTGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAATAAAACTGG
1 GAAAATAAAACGGA-GTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTAGAAATAAAAC-CG
* * * *
32017 GGTTGGAGTATTCTCTTGAAAATAACAGGGTTGGAGTATCCTCGATTATGGAAAATTGGTGTTTT
64 GGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTT
*
32082 GAAAAATAAAACCGGGGTTGGAGTATCC
1 G-AAAATAAAA-CGGAGTTGGAGTATCC
32110 TCTCGAAAAT
Statistics
Matches: 240, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
127 8 0.03
129 3 0.01
130 100 0.42
131 127 0.53
132 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (128 bp):
GAAAATAAAACGGAGTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTAGAAATAAAACCGGG
TTGGAGTATCCTCTCGAAAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTT
Found at i:31899 original size:51 final size:50
Alignment explanation
Indices: 31783--31899 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 50
31773 GGAAATAATG
* * *
31783 GGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATC
1 GGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACC
*
31833 GGAGTTGGAGTATCCTCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACC
1 GG-GTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACC
31884 AGGGTTGGAGTATCCT
1 -GGGTTGGAGTATCCT
31900 TTCGAAAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 2 0.03
51 57 0.93
52 2 0.03
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (50 bp):
GGGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACC
Found at i:31977 original size:51 final size:51
Alignment explanation
Indices: 31914--32027 Score: 131
Period size: 51 Copynumber: 2.2 Consensus size: 51
31904 AAAAATAACA
* * *
31914 AGGTTGGGGTATCCCCGATGGTGGAAAATCGATGTTTT-GAAAATAAAACCG
1 AGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAG-AAATAAAACCG
* * * * *
31965 AGGTTTGAGTATCCCCAATTGTGAAAAATTGGTGTTTTAGAAATAAAACTG
1 AGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAACCG
*
32016 GGGTTGGAGTAT
1 AGGTTGGAGTAT
32028 TCTCTTGAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 51 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (51 bp):
AGGTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAGAAATAAAACCG
Found at i:32102 original size:80 final size:80
Alignment explanation
Indices: 31963--32171 Score: 289
Period size: 80 Copynumber: 2.6 Consensus size: 80
31953 AAAATAAAAC
* * * *
31963 CGAGGTTTGAGTATCCCCAATTGTGAAAAATTGGTGTTTT-AGAAATAAAACTGGGGTTGGAGTA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAATAAAACCGGGGTTGGAGTA
* *
32027 TTCTCTTGAAAATAA
66 TCCTCTCGAAAATAA
* * *
32042 C-AGGGTTGGAGTATCCTCGATTATGGAAAATTGGTGTTTTGAAAAATAAAACCGGGGTTGGAGT
1 CGA-GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAATAAAACCGGGGTTGGAGT
32106 ATCCTCTCGAAAATAA
65 ATCCTCTCGAAAATAA
* *
32122 CGAGGTTGAAGTATCCCCGATTGTAAAAAATTGGTGTTTTG-AAAATAAAA
1 CGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAATAAAA
32172 ACATGAATAA
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 42 0.37
80 69 0.61
81 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (80 bp):
CGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAAATAAAACCGGGGTTGGAGTA
TCCTCTCGAAAATAA
Found at i:38207 original size:20 final size:21
Alignment explanation
Indices: 38161--38207 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
38151 AATTTCAAAT
*
38161 GCATGTATCGATACATTACGA
1 GCATGTATCGATACATTAAGA
38182 --ATTGTATCGATACA-TAAGA
1 GCA-TGTATCGATACATTAAGA
38201 GCATGTA
1 GCATGTA
38208 AGTGCAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 7
0.73 0.03 0.23
Matches are distributed among these distances:
19 5 0.23
20 16 0.73
21 1 0.05
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (21 bp):
GCATGTATCGATACATTAAGA
Found at i:38302 original size:22 final size:22
Alignment explanation
Indices: 38274--38318 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
38264 TCTCCAACGG
38274 ATACATCCTTGATCAAGCCTAT
1 ATACATCCTTGATCAAGCCTAT
38296 ATACATCCTTGATCAAGCCTAT
1 ATACATCCTTGATCAAGCCTAT
38318 A
1 A
38319 AATACAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (22 bp):
ATACATCCTTGATCAAGCCTAT
Found at i:38658 original size:35 final size:36
Alignment explanation
Indices: 38588--38659 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
38578 TTAAGTGATT
**
38588 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCCGTGAAAAAGATAGGGA
38624 GAGAGGTTCTATCTTAGCCCGTG-AAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCCGTGAAAAAGATAGGGA
38659 G
1 G
38660 GTTTCTATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 13 0.38
36 21 0.62
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.25
Consensus pattern (36 bp):
GAGAGGTTCTATCTTAGCCCGTGAAAAAGATAGGGA
Found at i:38671 original size:32 final size:34
Alignment explanation
Indices: 38588--38671 Score: 109
Period size: 36 Copynumber: 2.5 Consensus size: 34
38578 TTAAGTGATT
**
38588 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGGG
1 GAGAGGTTCTATCTTAGCCCGTGAAAAAGATA-GG
38623 AGAGAGGTTCTATCTTAGCCCGTG-AAAAGATAGG
1 -GAGAGGTTCTATCTTAGCCCGTGAAAAAGATAGG
*
38657 GAG-GTTTCTATCTTA
1 GAGAGGTTCTATCTTA
38672 ACCTTGAAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
32 11 0.24
33 3 0.07
34 2 0.04
35 8 0.18
36 21 0.47
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (34 bp):
GAGAGGTTCTATCTTAGCCCGTGAAAAAGATAGG
Found at i:39468 original size:150 final size:149
Alignment explanation
Indices: 39241--39681 Score: 469
Period size: 150 Copynumber: 2.9 Consensus size: 149
39231 ATGGGAAAAT
* * * * ** *
39241 AAAGGAAAAACCAAACCAATCCCTAATACATACCTTTGGCATAG-AA-GCGACCCGATAATTTCA
1 AAAGTAAAAA-CAAACCCATACCTAATTCATACCTTCAGCATAGAAATG-GACCCGATAATTTTA
* * * * * *
39304 CAAAACTAGGTTTCAAAGAAAAATGATGAAAAGGTCCCTAAGGTTTGCCATCGACTTAGAACTGC
64 TAAGACTAGGTTTCAAGGAAAAAGGCT-AAAAGGTCCCTAAGGTTT-CCATCGACTTAGAAGTGC
* *
39369 TCGGTGAT-CTGAGAGGACTTGAA
127 TCGGTGATCCTAAGA-AACTTGAA
* * *
39392 AAAGTAAAAGCAAACCTACT-CCTAATT-ATACCTTCAGCATAGAAATGGACCCGATAGTTTTAT
1 AAAGTAAAAACAAACCCA-TACCTAATTCATACCTTCAGCATAGAAATGGACCCGATAATTTTAT
* * * * *
39455 AAGACTAGGTTTCAGGGAAAAAGGCTAAAAGGTCCCTAAGGTCTTCCATTGTCTTAGAAGTACCC
65 AAGACTAGGTTTCAAGGAAAAAGGCTAAAAGGTCCCTAAGGT-TTCCATCGACTTAGAAGTGCTC
**
39520 AATGATCCTAAGAAACTTGAA
129 GGTGATCCTAAGAAACTTGAA
* * * *
39541 AAGGTAAAAACAAACCCATACCTAATTCATACCTTCAGCGTAGAAGTGGACTCGATAATTTTATA
1 AAAGTAAAAACAAACCCATACCTAATTCATACCTTCAGCATAGAAATGGACCCGATAATTTTATA
* * * *
39606 GGACTAGGTTTCGAGGAAAAAGGCTAAAAGGTCCCTAAGGTGTACCATCGACATAGAAGTGCTCG
66 AGACTAGGTTTCAAGGAAAAAGGCTAAAAGGTCCCTAAGGT-TTCCATCGACTTAGAAGTGCTCG
*
39671 GTGACCCTAAG
130 GTGATCCTAAG
39682 GGACTTAAAA
Statistics
Matches: 240, Mismatches: 43, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
148 1 0.00
149 77 0.32
150 152 0.63
151 10 0.04
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (149 bp):
AAAGTAAAAACAAACCCATACCTAATTCATACCTTCAGCATAGAAATGGACCCGATAATTTTATA
AGACTAGGTTTCAAGGAAAAAGGCTAAAAGGTCCCTAAGGTTTCCATCGACTTAGAAGTGCTCGG
TGATCCTAAGAAACTTGAA
Found at i:49992 original size:20 final size:20
Alignment explanation
Indices: 49964--50001 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
49954 GTAAAAAGAC
*
49964 AGAATGTATTGATACATTGA
1 AGAACGTATTGATACATTGA
49984 AGAACGTATTGATACATT
1 AGAACGTATTGATACATT
50002 CATACATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (20 bp):
AGAACGTATTGATACATTGA
Found at i:50012 original size:20 final size:20
Alignment explanation
Indices: 49989--50060 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
49979 ATTGAAGAAC
*
49989 GTATTGATACATTCATACAT
1 GTATCGATACATTCATACAT
50009 GTATCGATACATTCATACAT
1 GTATCGATACATTCATACAT
*
50029 GTATCGATACATTGAATA-AT
1 GTATCGATACATT-CATACAT
50049 GTATCGATACAT
1 GTATCGATACAT
50061 CTGGGTAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 46 0.94
21 3 0.06
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTCATACAT
Found at i:51038 original size:68 final size:70
Alignment explanation
Indices: 50873--51044 Score: 285
Period size: 69 Copynumber: 2.5 Consensus size: 70
50863 CAGTGGTGAC
* * *
50873 TTGAAAAGGGTTGCCACTGACTTGCGTGGGCTTTTTTCAAAAAAAAAGGTGCCACTAACTTGTGT
1 TTGAAAAGAGTTGCCACTGACTCGTGTGGGCTTTTTTCAAAAAAAAAGGTGCCACTAACTTGTGT
50938 GGGCT
66 GGGCT
* *
50943 TTGAAAAGAGTTGCCACTAACTCGTGTGGGCTTTTTT-TAAAAAAAAGGTGCCACTAACTTGTGT
1 TTGAAAAGAGTTGCCACTGACTCGTGTGGGCTTTTTTCAAAAAAAAAGGTGCCACTAACTTGTGT
51007 GGGCT
66 GGGCT
51012 TTGAAAAGAG-TGCCACTGACTCGTGTGGGCTTT
1 TTGAAAAGAGTTGCCACTGACTCGTGTGGGCTTT
51045 GAAAAGAGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
68 22 0.23
69 41 0.43
70 33 0.34
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (70 bp):
TTGAAAAGAGTTGCCACTGACTCGTGTGGGCTTTTTTCAAAAAAAAAGGTGCCACTAACTTGTGT
GGGCT
Found at i:51098 original size:28 final size:28
Alignment explanation
Indices: 50985--51651 Score: 640
Period size: 28 Copynumber: 23.3 Consensus size: 28
50975 TTTTTTAAAA
* *
50985 AAAAGGTGCCACTAACTTGTGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
51015 AAAAGAGTGCCACTGACTCGTGTGGGCTTTG
1 AAAAGA-TGCCACTGACT--TGTGGGCTTTG
* *
51046 AAAAGAGTTACCACTAACTTGTGGGCTTTG
1 AAAAGA--TGCCACTGACTTGTGGGCTTTG
* *
51076 AAAAGATGCCACTAACTTATGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
51104 AAAAGAGTGCCACCGACTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
* *
51133 AAATGATGCCACTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
51161 AAAAGAGTGCCACTAACTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
* * *
51190 AAATGGTGCCACTGACTTGCATGAGCTTTG
1 AAAAGATGCCACTGACTTG--TGGGCTTTG
* * *
51220 AAAGGGTGCCACTAACTTG-GGAGCTTTG
1 AAAAGATGCCACTGACTTGTGG-GCTTTG
* * * *
51248 ATAGGGTGCCACTGACTTGCGTGAGCTTTG
1 AAAAGATGCCACTGACTT--GTGGGCTTTG
* * * *
51278 AAAGGGTGCCATTGACTGGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
51306 AAAAGGTGCCACTGACTCGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
51334 AAAGGATGCAACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * * * *
51362 AAAGGGTGCCACCGACTCGTGGGCGTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* ** *
51390 AAAGGATGCCACCAACTTGTGGGCTTTA
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * * **
51418 AAAAGAGTTACCACCGGCTCATGGG-TTTG
1 AAAAGA--TGCCACTGACTTGTGGGCTTTG
* * *
51447 AAAGGATGCCACTGACTGGTGGGCTTTA
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
51475 AAAAGAGTGCCACTAACTTATGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
* *
51504 AAAAGGTGCCACTGACTTATGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
51532 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
51560 AAAA-AGTGTCACTGACTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
*
51588 AAAAGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
51616 AAAGGGTGCCACTGACTTGT-GGCTTTT
1 AAAAGATGCCACTGACTTGTGGGCTTTG
51643 AAAGAGATG
1 AAA-AGATG
51652 AACATTCTAG
Statistics
Matches: 542, Mismatches: 77, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.04
28 319 0.59
29 81 0.15
30 82 0.15
31 28 0.05
32 9 0.02
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (28 bp):
AAAAGATGCCACTGACTTGTGGGCTTTG
Found at i:52879 original size:11 final size:11
Alignment explanation
Indices: 52856--52922 Score: 66
Period size: 11 Copynumber: 6.1 Consensus size: 11
52846 ATCTGGACCC
52856 TTTTTTGTTTT
1 TTTTTTGTTTT
* *
52867 TTTGTTATTTT
1 TTTTTTGTTTT
* *
52878 TTTCTTG-GTT
1 TTTTTTGTTTT
52888 TTTTTTGTTTT
1 TTTTTTGTTTT
52899 TTTTTTGGTTTT
1 TTTTTT-GTTTT
52911 TTCTTTT-TTTT
1 TT-TTTTGTTTT
52922 T
1 T
52923 GGTATGAAGG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
10 8 0.17
11 27 0.59
12 7 0.15
13 4 0.09
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:52892 original size:32 final size:30
Alignment explanation
Indices: 52856--52922 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 30
52846 ATCTGGACCC
*
52856 TTTTTTGTTTTTTTGTTATTTTTTTCTTGGTT
1 TTTTTTGTTTTTTTGTTAGTTTTTTCTT--TT
* *
52888 TTTTTTGTTTTTTTTTTGGTTTTTTCTTTT
1 TTTTTTGTTTTTTTGTTAGTTTTTTCTTTT
52918 TTTTT
1 TTTTT
52923 GGTATGAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
30 7 0.22
32 25 0.78
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (30 bp):
TTTTTTGTTTTTTTGTTAGTTTTTTCTTTT
Found at i:52912 original size:21 final size:20
Alignment explanation
Indices: 52856--52922 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 20
52846 ATCTGGACCC
52856 TTTTTT-GTTTTTTTGTTATTT
1 TTTTTTGGTTTTTTT-TT-TTT
52877 TTTTCTTGGTTTTTTTTGTTTT
1 TTTT-TTGGTTTTTTTT-TTTT
52899 TTTTTTGGTTTTTTCTTTTTT
1 TTTTTTGGTTTTTT-TTTTTT
52920 TTT
1 TTT
52923 GGTATGAAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
21 21 0.50
22 12 0.29
23 9 0.21
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (20 bp):
TTTTTTGGTTTTTTTTTTTT
Found at i:66697 original size:13 final size:13
Alignment explanation
Indices: 66679--66704 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66669 ACACCAAAGT
66679 ATGTATCGATACA
1 ATGTATCGATACA
66692 ATGTATCGATACA
1 ATGTATCGATACA
66705 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:66702 original size:33 final size:33
Alignment explanation
Indices: 66660--66724 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
66650 TAGCCAAACT
* *
66660 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
66693 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
66725 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:73632 original size:7 final size:7
Alignment explanation
Indices: 73622--73667 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
73612 TTACTTTTTT
73622 TTTCTTC
1 TTTCTTC
73629 TTTCTTC
1 TTTCTTC
73636 TTTCTTC
1 TTTCTTC
73643 TTTCTTC
1 TTTCTTC
73650 TTTCTTC
1 TTTCTTC
73657 TTTCTT-
1 TTTCTTC
73663 TTTCT
1 TTTCT
73668 CTCCCTCTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
6 5 0.13
7 34 0.87
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTCTTC
Found at i:73647 original size:21 final size:20
Alignment explanation
Indices: 73615--73667 Score: 88
Period size: 21 Copynumber: 2.6 Consensus size: 20
73605 TAGTTTTTTA
*
73615 CTTTTTTTTTCTTCTTTCTT
1 CTTTCTTTTTCTTCTTTCTT
73635 CTTTCTTCTTTCTTCTTTCTT
1 CTTTCTT-TTTCTTCTTTCTT
73656 CTTTCTTTTTCT
1 CTTTCTTTTTCT
73668 CTCCCTCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 11 0.35
21 20 0.65
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (20 bp):
CTTTCTTTTTCTTCTTTCTT
Found at i:79209 original size:24 final size:25
Alignment explanation
Indices: 79182--79245 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
79172 AAAAAATATG
*
79182 TTTAATAATAATATTTATAT-ATTT
1 TTTAATAATAATATTTAAATAATTT
79206 TTT-ATAATTAA-ATTTAAATAATTT
1 TTTAATAA-TAATATTTAAATAATTT
*
79230 TTTATTAATAAATATT
1 TTTAATAAT-AATATT
79246 AATTCAACCT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
23 11 0.33
24 14 0.42
25 5 0.15
26 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTAATAATAATATTTAAATAATTT
Found at i:79238 original size:25 final size:22
Alignment explanation
Indices: 79175--79247 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 22
79165 TTTTTTAAAA
* *
79175 AAATATGTTTAATAATAATATTT
1 AAATATTTTTTATAATAA-ATTT
*
79198 ATATATTTTTTATAATTAAATTT
1 AAATATTTTTTATAA-TAAATTT
79221 AAATAATTTTTTATTAATAAATATT
1 AAAT-ATTTTTTA-TAATAAAT-TT
79246 AA
1 AA
79248 TTCAACCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
23 19 0.45
24 16 0.38
25 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (22 bp):
AAATATTTTTTATAATAAATTT
Found at i:79489 original size:22 final size:22
Alignment explanation
Indices: 79464--79505 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
79454 ATTTAGATTC
79464 TTAAGGTTGTGTTTTAACAATT
1 TTAAGGTTGTGTTTTAACAATT
79486 TTAAGGTTGTGTTTTAACAA
1 TTAAGGTTGTGTTTTAACAA
79506 AACAGAGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.48
Consensus pattern (22 bp):
TTAAGGTTGTGTTTTAACAATT
Found at i:83378 original size:13 final size:13
Alignment explanation
Indices: 83360--83384 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83350 CTATTTATAG
83360 TGTATCGATACAA
1 TGTATCGATACAA
83373 TGTATCGATACA
1 TGTATCGATACA
83385 TGAATAGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:83509 original size:22 final size:22
Alignment explanation
Indices: 83454--83509 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
83444 AGTAACAACG
83454 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
83476 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
83497 ATGAACAGTGATG
1 ATGAACAGTGATG
83510 AATAGTGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:88210 original size:21 final size:20
Alignment explanation
Indices: 88181--88219 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
88171 GGCTAGTATG
*
88181 GGGACTGCCCGGTTGCGACTT
1 GGGACTG-CCGGTCGCGACTT
*
88202 GGGAGTGCCGGTCGCGAC
1 GGGACTGCCGGTCGCGAC
88220 CTGGTGGTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.10, C:0.28, G:0.44, T:0.18
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACTT
Found at i:88683 original size:13 final size:13
Alignment explanation
Indices: 88665--88702 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
88655 ATAATCCCCC
88665 TGTATCGATACAG
1 TGTATCGATACAG
* *
88678 TGTATCGAAACAT
1 TGTATCGATACAG
88691 TGTATCGATACA
1 TGTATCGATACA
88703 AAGAAAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:91072 original size:13 final size:13
Alignment explanation
Indices: 91054--91079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91044 CAATTTTTTG
91054 TGTATCGATACAT
1 TGTATCGATACAT
91067 TGTATCGATACAT
1 TGTATCGATACAT
91080 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:91144 original size:21 final size:20
Alignment explanation
Indices: 91118--91194 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
91108 CTGCCAAGAA
91118 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACAT-TTTTTT
*****
91139 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTT
91159 ATGTATCGATACATTTTTTT
1 ATGTATCGATACATTTTTTT
91179 CATGTATCGATACATT
1 -ATGTATCGATACATT
91195 GCAACATGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTT
Found at i:91164 original size:20 final size:20
Alignment explanation
Indices: 91139--91211 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
91129 CATCTTTTTT
91139 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
91159 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
91180 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
91200 ATGTATCGATAC
1 ATGTATCGATAC
91212 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:91178 original size:41 final size:41
Alignment explanation
Indices: 91118--91211 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
91108 CTGCCAAGAA
*
91118 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
91159 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
91200 ATGTATCGATAC
1 ATGTATCGATAC
91212 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:91820 original size:48 final size:48
Alignment explanation
Indices: 91765--91860 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
91755 AAATTTTACG
91765 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
91813 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
1 AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
91861 TTATCTCCCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (48 bp):
AATTTGTACATTCTCCCCCTTAATAAGGTAATTCACGCATTCTCTCCT
Found at i:93720 original size:13 final size:13
Alignment explanation
Indices: 93702--93739 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
93692 ATAAACACCC
93702 TGTATCGATACAG
1 TGTATCGATACAG
*
93715 TGTATCGATACAT
1 TGTATCGATACAG
93728 TGTATCGATACA
1 TGTATCGATACA
93740 AATAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:95831 original size:15 final size:15
Alignment explanation
Indices: 95811--95841 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
95801 ATTTCGTTTG
*
95811 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
95826 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
95841 G
1 G
95842 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:99759 original size:13 final size:13
Alignment explanation
Indices: 99741--99766 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99731 CAATTTTTTG
99741 TGTATCGATACAT
1 TGTATCGATACAT
99754 TGTATCGATACAT
1 TGTATCGATACAT
99767 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:99851 original size:20 final size:20
Alignment explanation
Indices: 99826--99899 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
99816 CATCTTTTTT
99826 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
99846 ATGTATCGATACATTTTTTTTC
1 ATGTATCGATACA--TTGCAAC
99868 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
99888 ATGTATCGATAC
1 ATGTATCGATAC
99900 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 28 0.64
22 16 0.36
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:99865 original size:41 final size:42
Alignment explanation
Indices: 99805--99899 Score: 174
Period size: 42 Copynumber: 2.3 Consensus size: 42
99795 CTGCCAAGAA
99805 ATGTATCGATACATCTTTTTT-ATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
*
99846 ATGTATCGATACATTTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
99888 ATGTATCGATAC
1 ATGTATCGATAC
99900 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:102534 original size:21 final size:21
Alignment explanation
Indices: 102505--102549 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
102495 AAGTTTTTAT
*
102505 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
102525 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
102547 TTT
1 TTT
102550 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:104807 original size:34 final size:32
Alignment explanation
Indices: 104750--104814 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
104740 TACAAGCCAA
* *
104750 TGTATCGATACAATTTTTTTGTATATCGATACAT
1 TGTATCGATACAA--TCTTTGTGTATCGATACAT
104784 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAAT-CTTTGTGTATCGATACA
104815 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 1 0.04
32 15 0.54
33 1 0.04
34 11 0.39
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (32 bp):
TGTATCGATACAATCTTTGTGTATCGATACAT
Found at i:105766 original size:28 final size:28
Alignment explanation
Indices: 105706--106172 Score: 519
Period size: 28 Copynumber: 16.5 Consensus size: 28
105696 TATGTGGGCA
105706 TTGTGGGCTTTGAAAGGATATGCCACTGAC
1 TTGTGGGCTTTGAAAGG--ATGCCACTGAC
*
105736 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
*
105764 TTGTGGGCTTTGAAAGG-TACCACTGAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* *
105791 TTGTGGGCTTTAAAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* *
105819 TTGTGAGCTTTGAAAAGG-TACCACTGAC
1 TTGTGGGCTTTG-AAAGGATGCCACTGAC
* * *
105847 TTGTGGGCTTTGGAAGGGTGCCACTGATT
1 TTGTGGGCTTTGAAAGGATGCCACTGA-C
*
105876 TATGTGGGCTTTGAAAGGGTGCCACTGAC
1 T-TGTGGGCTTTGAAAGGATGCCACTGAC
* *
105905 TTGTGGTCTTTTG-AAGAGATGCCACTAAC
1 TTGTGGGC-TTTGAAAG-GATGCCACTGAC
*
105934 TTGTGGGCTTTGAAAGGATGCCACTGAT
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* * * * *
105962 TTATGGGCCTTGAAAGGGTGCCGCTGAT
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
*
105990 TTGTGGGCTTTGAAAGAATGCCACTGAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* *
106018 TTATGGTCTTTTG-AAGAGATGCCACTGAC
1 TTGTGGGC-TTTGAAAG-GATGCCACTGAC
* *
106047 TTGTGGGCTTTGAAAGGATGCTACTAAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* * *
106075 TTGTGGGCTTTGAAAGGGTGCTACTAAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* * *
106103 TTGTGGGCTTCGAAAAGATGCCATTGAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* *
106131 TTATGGGCGTTGAAAGGATGCCACTGAC
1 TTGTGGGCTTTGAAAGGATGCCACTGAC
* * *
106159 CTATTGGCTTTGAA
1 TTGTGGGCTTTGAA
106173 GAGATGAACG
Statistics
Matches: 373, Mismatches: 53, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
27 29 0.08
28 247 0.66
29 55 0.15
30 42 0.11
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
TTGTGGGCTTTGAAAGGATGCCACTGAC
Found at i:105887 original size:141 final size:140
Alignment explanation
Indices: 105706--106157 Score: 543
Period size: 141 Copynumber: 3.2 Consensus size: 140
105696 TATGTGGGCA
*
105706 TTGTGGGCTTTGAAAGGATATGCCACTGACT-TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGG
1 TTGTGGGCTTTGAAAGG--ATGCCACTGATTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGG
* * * *
105770 GCTTTGAAAGGTACCACTGACTTGTGGGCTTTAAAAGGATGCCACTAACTTGTGAGCTTTGAAAA
64 GCTTTGAAAGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAA
*
105835 GGTACCACTGAC
129 GGTGCCACTGAC
* * *
105847 TTGTGGGCTTTGGAAGGGTGCCACTGATTTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGT
1 TTGTGGGCTTTGAAAGGATGCCACTGA-TTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * * *
105912 CTTTTGAAGAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGATTTATGGGCCTTGAAA
65 C-TTTGAA-AGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA
* * *
105977 GGGTGCCGCTGAT
128 AGGTGCCACTGAC
* * *
105990 TTGTGGGCTTTGAAAGAATGCCACTGACTTA--TGGTCTTTTG-AAGAGATGCCACTGACTTGTG
1 TTGTGGGCTTTGAAAGGATGCCACTGA-TTATGTGGGC-TTTGAAAG-GGTGCCACTGACTTGTG
* * * *
106052 GGCTTTGAAAGGATGCTACTAACTTGTGGGCTTTGAAAGGGTGCTACTAACTTGTGGGCTTCGAA
63 GGCTTTGAAAGG-TGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAA
* *
106117 AAGATGCCATTGAC
127 AAGGTGCCACTGAC
* *
106131 TTATGGGCGTTGAAAGGATGCCACTGA
1 TTGTGGGCTTTGAAAGGATGCCACTGA
106158 CCTATTGGCT
Statistics
Matches: 263, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
139 9 0.03
140 3 0.01
141 140 0.53
142 28 0.11
143 83 0.32
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (140 bp):
TTGTGGGCTTTGAAAGGATGCCACTGATTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGC
TTTGAAAGGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGG
TGCCACTGAC
Found at i:106049 original size:113 final size:113
Alignment explanation
Indices: 105706--106155 Score: 552
Period size: 113 Copynumber: 4.0 Consensus size: 113
105696 TATGTGGGCA
105706 TTGTGGGCTTTGAAAGGATATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 TTGTGGGCTTTGAAAGG--ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
* * * **
105771 CTTTGAAAG-GTACCACTGACTTGTGGGCTTTAAAAG-GATGCCACTAAC
64 CTTTGAAAGAATGCCACTGACTTATGGGCTTTTGAAGAGATGCCACTAAC
* * * *
105819 TTGTGAGCTTTGAAAAGG-TACCACTGACTTGTGGGCTTTGGAAGGGTGCCACTGATTTATGTGG
1 TTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA-CT-TGTGG
** * *
105883 GCTTTGAAAGGGTGCCACTGACTTGTGGTCTTTTGAAGAGATGCCACTAAC
63 GCTTTGAAAGAATGCCACTGACTTATGGGCTTTTGAAGAGATGCCACTAAC
* * * * *
105934 TTGTGGGCTTTGAAAGGATGCCACTGATTTATGGGCCTTGAAAGGGTGCCGCTGATTTGTGGGCT
1 TTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
* *
105999 TTGAAAGAATGCCACTGACTTATGGTCTTTTGAAGAGATGCCACTGAC
66 TTGAAAGAATGCCACTGACTTATGGGCTTTTGAAGAGATGCCACTAAC
* * * *
106047 TTGTGGGCTTTGAAAGGATGCTACTAACTTGTGGGCTTTGAAAGGGTGCTACTAACTTGTGGGCT
1 TTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
* * *
106112 TCGAAA-AGATGCCATTGACTTATGGGC-GTTGAA-AGGATGCCACT
66 TTGAAAGA-ATGCCACTGACTTATGGGCTTTTGAAGA-GATGCCACT
106156 GACCTATTGG
Statistics
Matches: 297, Mismatches: 32, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
111 36 0.12
112 16 0.05
113 156 0.53
114 35 0.12
115 54 0.18
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (113 bp):
TTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
TTGAAAGAATGCCACTGACTTATGGGCTTTTGAAGAGATGCCACTAAC
Found at i:107429 original size:13 final size:13
Alignment explanation
Indices: 107411--107496 Score: 50
Period size: 14 Copynumber: 6.3 Consensus size: 13
107401 TCTGGACCCC
107411 TTTTTTTGTTTGTT
1 TTTTTTTGTTTG-T
107425 TTTTTTTGTATT-T
1 TTTTTTTGT-TTGT
* *
107438 TTCTTTTGGTTTTT
1 TT-TTTTTGTTTGT
*
107452 TCTTATTCTTTTTTGT
1 T-TT-TT-TTGTTTGT
* * *
107468 TTTTTCTCTTGGT
1 TTTTTTTGTTTGT
107481 TTTTTTTGTTT-T
1 TTTTTTTGTTTGT
107493 TTTT
1 TTTT
107497 AATTTTTTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
12 5 0.09
13 18 0.32
14 20 0.36
15 7 0.12
16 6 0.11
ACGTcount: A:0.02, C:0.06, G:0.10, T:0.81
Consensus pattern (13 bp):
TTTTTTTGTTTGT
Found at i:107477 original size:22 final size:20
Alignment explanation
Indices: 107413--107505 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 20
107403 TGGACCCCTT
*
107413 TTTTTGTTTGTTTTTTTTTGTA
1 TTTTT-TTTGTTTTTTTCT-TA
*
107435 TTTTTCTTTTGGTTTTTTCTTA
1 -TTTT-TTTTGTTTTTTTCTTA
*
107457 TTCTTTTTTGTTTTTTCTCTTGG
1 TT-TTTTTTGTTTTTT-TCTT-A
*
107480 TTTTTTTTGTTTTTTT-TAA
1 TTTTTTTTGTTTTTTTCTTA
107499 TTTTTTT
1 TTTTTTT
107506 GGTACGAAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
19 7 0.12
20 1 0.02
21 13 0.22
22 21 0.35
23 17 0.28
24 1 0.02
ACGTcount: A:0.04, C:0.05, G:0.10, T:0.81
Consensus pattern (20 bp):
TTTTTTTTGTTTTTTTCTTA
Found at i:121395 original size:20 final size:20
Alignment explanation
Indices: 121370--121444 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
121360 AAAAAGACAG
* *
121370 AATGTATCGATATATTGAAA
1 AATGTATCGATACATTAAAA
* *
121390 AATGTATCGATACATTCATA
1 AATGTATCGATACATTAAAA
* *
121410 CATATATCGATACATTAAAA
1 AATGTATCGATACATTAAAA
121430 AATGTATCGATACAT
1 AATGTATCGATACAT
121445 CTGGGTAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTAAAA
Found at i:121431 original size:40 final size:40
Alignment explanation
Indices: 121374--121515 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 40
121364 AGACAGAATG
* *
121374 TATCGATATATTGAAAAATGTATCGATACATTCATACATA
1 TATCGATACATTAAAAAATGTATCGATACATTCATACATA
***
121414 TATCGATACATTAAAAAATGTATCGATACA-TC-TGGGTA
1 TATCGATACATTAAAAAATGTATCGATACATTCATACATA
* * *
121452 -A---A-A-A-GACAAAATGTATCGATACATTCATACATG
1 TATCGATACATTAAAAAATGTATCGATACATTCATACATA
* *
121485 TATCGATACATTGAAAAATGTATCCATACAT
1 TATCGATACATTAAAAAATGTATCGATACAT
121516 CTGGGTAAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
31 17 0.22
32 3 0.04
33 3 0.04
34 2 0.03
37 2 0.03
38 4 0.05
39 3 0.04
40 44 0.56
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (40 bp):
TATCGATACATTAAAAAATGTATCGATACATTCATACATA
Found at i:121486 original size:91 final size:91
Alignment explanation
Indices: 121320--121496 Score: 273
Period size: 91 Copynumber: 1.9 Consensus size: 91
121310 TTTTAACTAG
**** * *
121320 ATATATCGATACATTTTTCAATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATATAT
1 ATATATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
*
121385 TGAAAAATGTATCGATACATTCATAC
66 TCAAAAATGTATCGATACATTCATAC
121411 ATATATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
1 ATATATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
* *
121476 TCATACATGTATCGATACATT
66 TCAAAAATGTATCGATACATT
121497 GAAAAATGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
91 77 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (91 bp):
ATATATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACAT
TCAAAAATGTATCGATACATTCATAC
Found at i:121487 original size:20 final size:20
Alignment explanation
Indices: 121459--121515 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
121449 GTAAAAAGAC
121459 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* * *
121479 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCA
*
121499 AAAATGTATCCATACAT
1 AAAATGTATCGATACAT
121516 CTGGGTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:121514 original size:91 final size:91
Alignment explanation
Indices: 121339--121515 Score: 264
Period size: 91 Copynumber: 1.9 Consensus size: 91
121329 TACATTTTTC
* * *
121339 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATATATTGAAAAATGTATCGATACA
1 AATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCGATACA
* * *
121404 TTCATACATATATCGATACATTAAAA
66 TTCAAAAATATATCCATACATTAAAA
* *
121430 AATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCATACATGTATCGATACA
1 AATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCGATACA
* *
121495 TTGAAAAATGTATCCATACAT
66 TTCAAAAATATATCCATACAT
121516 CTGGGTAAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
91 76 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (91 bp):
AATGTATCGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTCAAAAATGTATCGATACA
TTCAAAAATATATCCATACATTAAAA
Found at i:121543 original size:72 final size:72
Alignment explanation
Indices: 121388--121598 Score: 361
Period size: 72 Copynumber: 2.9 Consensus size: 72
121378 GATATATTGA
* *
121388 AAAATGTATCGATACATTCATACATATATCGATACATTAAAAAATGTATCGATACATCTGGGT-A
1 AAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
121452 AAAAGAC
66 AAAAGAC
*
121459 AAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCCATACATCTGGGTAA
1 AAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
121524 AAAAGAC
66 AAAAGAC
* * *
121531 AAAATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGCATCGATACATCTTGGTAA
1 AAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
121596 AAA
66 AAA
121599 TGTGACTTTT
Statistics
Matches: 132, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 60 0.45
72 72 0.55
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (72 bp):
AAAATGTATCGATACATTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAA
AAAAGAC
Found at i:121559 original size:20 final size:20
Alignment explanation
Indices: 121531--121587 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
121521 TAAAAAAGAC
121531 AAAATGTATCGATACATTCA
1 AAAATGTATCGATACATTCA
* * * *
121551 TACATGTATCAATACATTGA
1 AAAATGTATCGATACATTCA
*
121571 AAAATGCATCGATACAT
1 AAAATGTATCGATACAT
121588 CTTGGTAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:122947 original size:28 final size:27
Alignment explanation
Indices: 122857--122988 Score: 110
Period size: 27 Copynumber: 4.7 Consensus size: 27
122847 TTTGGTTAGA
122857 AAAAATTTAATT-AAAAATGCCATGTGT
1 AAAAATTTAATTAAAAAATG-CATGTGT
*
122884 AAAGGAAATCTAA-T-AAAAATAGTCATAG-GT
1 -AA--AAATTTAATTAAAAAAT-G-CAT-GTGT
*
122914 ACAAATTTAAATTAAAAAATGCATGTGTT
1 AAAAATTT-AATTAAAAAATGCATGTG-T
* * *
122943 AAAATTTTAATTAAAAATTTCATGTGT
1 AAAAATTTAATTAAAAAATGCATGTGT
122970 AAAAATTTAATTAAAAAAT
1 AAAAATTTAATTAAAAAAT
122989 CTATAGATGA
Statistics
Matches: 85, Mismatches: 10, Indels: 19
0.75 0.09 0.17
Matches are distributed among these distances:
27 24 0.28
28 24 0.28
29 17 0.20
30 19 0.22
31 1 0.01
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAAATTTAATTAAAAAATGCATGTGT
Found at i:122972 original size:27 final size:28
Alignment explanation
Indices: 122916--122988 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
122906 TCATAGGTAC
*
122916 AAATTTAAATTAAAAAATGCATGTGTTA
1 AAATTTTAATTAAAAAATGCATGTGTTA
* *
122944 AAATTTTAATTAAAAATTTCATGTG-TA
1 AAATTTTAATTAAAAAATGCATGTGTTA
*
122971 AAAATTTAATTAAAAAAT
1 AAATTTTAATTAAAAAAT
122989 CTATAGATGA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 18 0.45
28 22 0.55
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (28 bp):
AAATTTTAATTAAAAAATGCATGTGTTA
Found at i:123511 original size:7 final size:7
Alignment explanation
Indices: 123499--123537 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
123489 ATTTTTAAAT
123499 AATTTAA
1 AATTTAA
123506 AATTTAA
1 AATTTAA
123513 AATTTAA
1 AATTTAA
123520 AATAATTAA
1 AAT--TTAA
*
123529 AAATTAA
1 AATTTAA
123536 AA
1 AA
123538 AAATTATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 23 0.79
9 6 0.21
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AATTTAA
Found at i:123563 original size:15 final size:15
Alignment explanation
Indices: 123513--123565 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
123503 TAAAATTTAA
*
123513 AATTTAAAATAATTAA
1 AATTTAAAATAATT-T
* *
123529 AAATTAAAA-AAATT
1 AATTTAAAATAATTT
123543 ATATTTAAAATAATTT
1 A-ATTTAAAATAATTT
123559 AATTTAA
1 AATTTAA
123566 CATAGAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
16 13 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTTAAAATAATTT
Found at i:123908 original size:2 final size:2
Alignment explanation
Indices: 123901--123934 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
123891 GCCAAATTTA
123901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123935 TAGAGCATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:129573 original size:17 final size:17
Alignment explanation
Indices: 129531--129572 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
129521 AAATCGATCT
*
129531 AAATTT-AAATTATTTC
1 AAATTTAAAATAATTTC
129547 AAATTTAAAATAATTT-
1 AAATTTAAAATAATTTC
129563 AAATTTAAAA
1 AAATTTAAAA
129573 AGTCAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
AAATTTAAAATAATTTC
Found at i:129883 original size:2 final size:2
Alignment explanation
Indices: 129878--129923 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
129868 TTTTTGGGAC
*
129878 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129920 TA TA
1 TA TA
129924 AATACATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:130303 original size:21 final size:21
Alignment explanation
Indices: 130271--130314 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
130261 TAAAAATTTC
130271 TTTAAATCTATCCAATTTTTT
1 TTTAAATCTATCCAATTTTTT
*
130292 TTTAGAAT-TATCCACTTTTTT
1 TTTA-AATCTATCCAATTTTTT
130313 TT
1 TT
130315 AATTTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.25, C:0.14, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTAAATCTATCCAATTTTTT
Found at i:130487 original size:16 final size:16
Alignment explanation
Indices: 130462--130497 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
130452 AAATGATAAT
*
130462 AATAATAATAAAAAAA
1 AATAAAAATAAAAAAA
*
130478 AATAAAAATAAAAATA
1 AATAAAAATAAAAAAA
130494 AATA
1 AATA
130498 GCCTTTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AATAAAAATAAAAAAA
Found at i:131748 original size:45 final size:47
Alignment explanation
Indices: 131697--131801 Score: 135
Period size: 45 Copynumber: 2.3 Consensus size: 47
131687 GGTTAATTTG
*
131697 TTTTTTAATATAAATATAATTTTAATCATTATTTAACT-TTA-AAATA
1 TTTTTTAATATAAATATAATTTTAATAATT-TTTAACTATTATAAATA
* * * *
131743 -TTTTTAATGTAAATATGATTTTAATAATTTTTAATTATTATATATA
1 TTTTTTAATATAAATATAATTTTAATAATTTTTAACTATTATAAATA
131789 TTTTTTAATATAA
1 TTTTTTAATATAA
131802 TAACTTTTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
44 6 0.12
45 29 0.58
46 4 0.08
47 11 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (47 bp):
TTTTTTAATATAAATATAATTTTAATAATTTTTAACTATTATAAATA
Found at i:132915 original size:50 final size:50
Alignment explanation
Indices: 132851--133006 Score: 267
Period size: 50 Copynumber: 3.1 Consensus size: 50
132841 AGGTGTTGCC
*
132851 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGTCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGCCGTA
* * *
132901 ATTGTTGATTATTCTTCACCAACCTTTGACAATTGAGAGAGGTGGCCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGCCGTA
*
132951 ATTGTTGACTATTCTTCATCAACCTTTGACAATCGAGAGAGGTGGCCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGCCGTA
133001 ATTGTT
1 ATTGTT
133007 AACTCTAAGT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 98 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGGCCGTA
Found at i:139481 original size:20 final size:20
Alignment explanation
Indices: 139439--139484 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
139429 GTTACAAGCT
*
139439 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCACC
*
139459 ATGTATCGATAC-ATTGTACC
1 ATGTATCGATACAATT-CACC
139479 ATGTAT
1 ATGTAT
139485 TGTACAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:139564 original size:19 final size:20
Alignment explanation
Indices: 139520--139570 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
139510 CTGCCAATCT
* **
139520 CATGTATCAATACAATTGTC
1 CATGTATCGATACAATTGAA
139540 CATGTATCGATACAATT-AA
1 CATGTATCGATACAATTGAA
139559 CATGTATCGATA
1 CATGTATCGATA
139571 TAATGTATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:141699 original size:16 final size:16
Alignment explanation
Indices: 141678--141710 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
141668 ACGCTTAACT
141678 ATTCATTAGAGGCACA
1 ATTCATTAGAGGCACA
141694 ATTCATTAGAGGCACA
1 ATTCATTAGAGGCACA
141710 A
1 A
141711 GAGTCATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (16 bp):
ATTCATTAGAGGCACA
Found at i:142021 original size:26 final size:26
Alignment explanation
Indices: 141992--142041 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
141982 TTGAATCTTG
141992 CTTAATCTTGCATATGTTGAATTCTA
1 CTTAATCTTGCATATGTTGAATTCTA
142018 CTTAATCTTGCATATGTTGAATTC
1 CTTAATCTTGCATATGTTGAATTC
142042 AACCACCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (26 bp):
CTTAATCTTGCATATGTTGAATTCTA
Found at i:144117 original size:122 final size:122
Alignment explanation
Indices: 143900--144144 Score: 454
Period size: 122 Copynumber: 2.0 Consensus size: 122
143890 TGAATTATCA
* * *
143900 AATCTATCAAGTGTTTTTGGGTTTCTTTGAGTTTTGGTGCCATTATGTTGAGGAATTCAGATGCC
1 AATCTATCAAATGTTTTTGGGTTTCTTCGAGTTTTGGTGCCATTATGTCGAGGAATTCAGATGCC
143965 TCAAAATTGATTTCAAGAGTGATGTTTAGAGATTCCATAGATCTAGGAGTGTCTAAT
66 TCAAAATTGATTTCAAGAGTGATGTTTAGAGATTCCATAGATCTAGGAGTGTCTAAT
144022 AATCTATCAAATGTTTTTGGGTTTCTTCGAGTTTTGGTGCCATTATGTCGAGGAATTCAGATGCC
1 AATCTATCAAATGTTTTTGGGTTTCTTCGAGTTTTGGTGCCATTATGTCGAGGAATTCAGATGCC
*
144087 TCAAAATTGATTTCAAGAGTGATGTTTAGAGATTTCATAGATCTAGGAGTGTCTAAT
66 TCAAAATTGATTTCAAGAGTGATGTTTAGAGATTCCATAGATCTAGGAGTGTCTAAT
144144 A
1 A
144145 GTGGGTTCCT
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
122 119 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (122 bp):
AATCTATCAAATGTTTTTGGGTTTCTTCGAGTTTTGGTGCCATTATGTCGAGGAATTCAGATGCC
TCAAAATTGATTTCAAGAGTGATGTTTAGAGATTCCATAGATCTAGGAGTGTCTAAT
Found at i:146525 original size:51 final size:51
Alignment explanation
Indices: 146461--146629 Score: 196
Period size: 51 Copynumber: 3.3 Consensus size: 51
146451 AAAATAGCGG
* * *
146461 GGTTGGAGTATCCCCGATTATGAGAAATTAGTGTTTTGGAAATAAAATCGTA
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTAGAAATAAAATCG-A
* *
146513 -GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGA
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTAGAAATAAAATCGA
* * ** * * * *
146563 GGTTGGAGTACCCCCGATTATAAAAAAACAATATTTTTAGATATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTAGAAATAAAATCGA
146615 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
146630 TCGAAAATAA
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
50 1 0.01
51 69 0.70
52 29 0.29
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTAGAAATAAAATCGA
Found at i:146685 original size:76 final size:76
Alignment explanation
Indices: 146592--146781 Score: 281
Period size: 76 Copynumber: 2.5 Consensus size: 76
146582 ATAAAAAAAC
* **
146592 AATATTTTTAGATATAAAGTCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCC
1 AATA-TTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCC
*
146657 TGATGAAAAATT
65 CGATGAAAAATT
* * *
146669 AATATTTTAGAAATAAAACCGAGGTTGGAGTAACCCTTCGAAAATAACGGGGTTGGAGTATCCCC
1 AATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
146734 GATGAAAAATT
66 GATGAAAAATT
* * *
146745 GATGTTTTAGAAATAAAACCGGGGCTGGAGTATCCCC
1 AATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
146782 GAGATGAAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
76 96 0.96
77 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (76 bp):
AATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
GATGAAAAATT
Found at i:146914 original size:102 final size:103
Alignment explanation
Indices: 146720--147000 Score: 326
Period size: 102 Copynumber: 2.8 Consensus size: 103
146710 AAATAACGGG
* *
146720 GTTGGAGTATCCCCGATGA--AAAATTGATGTTTT-AGAAATAAAACCGGGGCTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTATGAAAATTGATGTTTTGA-AAATAAAACCGGGGTTGGAGTATCCCC
***
146782 GA--GATGAAAAATTGGTGTTTTTGGAAATAAAATCAGA
65 GATTGATGAAAAATTGGTGTTTTCAAAAATAAAATCAGA
* * *
146819 GTTGGAGTATCCCTGATTATAGAAAATTGGTGTTTTGAAAATAAAACTGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAT-GAAAATTGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCC
* *
146884 GATTG-TGGAAAATTGGTG-TTTCAAAAATAAAATCGGA
65 GATTGATGAAAAATTGGTGTTTTCAAAAATAAAATCAGA
** * * * *
146921 GTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCTCC
1 GTTGGAGTATCCCCGATTATGA-AAATTGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCC
*
146986 GATT-ATGAACAATTG
65 GATTGATGAAAAATTG
147001 AGAAACTTAA
Statistics
Matches: 153, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
99 17 0.11
101 2 0.01
102 120 0.78
103 13 0.08
104 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (103 bp):
GTTGGAGTATCCCCGATTATGAAAATTGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCG
ATTGATGAAAAATTGGTGTTTTCAAAAATAAAATCAGA
Found at i:146957 original size:153 final size:150
Alignment explanation
Indices: 146717--147000 Score: 340
Period size: 153 Copynumber: 1.9 Consensus size: 150
146707 CGAAAATAAC
* * *
146717 GGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGCTGGAGTATCCCC
1 GGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTCAAAAATAAAACCGGAGCTGGAGTATCCCC
*** * *
146782 GAGATGAAAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTATC-CCTGATTATAGAA-AA
66 GAGATGAAAAATCAATGATTTTGGAAATAAAACCAGAGTTGGAGTATCTCC-GATTAT-GAACAA
146845 TTGGTGTTTTGAAAATAAAACT
129 TTGGTGTTTTGAAAATAAAACT
* * * *
146867 GGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTCAAAAATAAAATCGGAGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGA---TGAAAAATTGATGTTTCAAAAATAAAACCGGAGCTGGAGTATC
* * * * *
146932 CCCGATTATGAGAAATCAAT-ATTTTGGAAATAAAGCCGGGGTTGGAGTATCTCCGATTATGAAC
63 CCCGA-GATGAAAAATCAATGATTTTGGAAATAAAACCAGAGTTGGAGTATCTCCGATTATGAAC
146996 AATTG
127 AATTG
147001 AGAAACTTAA
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
150 19 0.17
152 3 0.03
153 78 0.70
154 11 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (150 bp):
GGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTCAAAAATAAAACCGGAGCTGGAGTATCCCC
GAGATGAAAAATCAATGATTTTGGAAATAAAACCAGAGTTGGAGTATCTCCGATTATGAACAATT
GGTGTTTTGAAAATAAAACT
Found at i:146963 original size:51 final size:52
Alignment explanation
Indices: 146720--146993 Score: 255
Period size: 51 Copynumber: 5.4 Consensus size: 52
146710 AAATAACGGG
* * *
146720 GTTGGAGTATCCCCG---ATGA-AAAATTGATGTTTT-AGAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTATGAGAAAATTGGTGTTTTGA-AAATAAAATCGGA
* * * *
146768 GCTGGAGTATCCCCGA-GATGA-AAAATTGGTGTTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTATGAGAAAATTGGTG-TTTTGAAAATAAAATCGGA
* *
146819 GTTGGAGTATCCCTGATTAT-AGAAAATTGGTGTTTTGAAAATAAAA-CTGGG
1 GTTGGAGTATCCCCGATTATGAGAAAATTGGTGTTTTGAAAATAAAATC-GGA
* **
146870 GTTGGAGTATCCCCGATTGTG-GAAAATTGGTGTTTCAAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAGAAAATTGGTGTTTTGAAAATAAAATCGGA
*** * * ** *
146921 GTTGGAGTATCCCCGATTATGAG-AAATCAATATTTTGGAAATAAAGCCGGG
1 GTTGGAGTATCCCCGATTATGAGAAAATTGGTGTTTTGAAAATAAAATCGGA
*
146972 GTTGGAGTATCTCCGATTATGA
1 GTTGGAGTATCCCCGATTATGA
146994 ACAATTGAGA
Statistics
Matches: 187, Mismatches: 29, Indels: 17
0.80 0.12 0.07
Matches are distributed among these distances:
48 14 0.07
50 14 0.07
51 145 0.78
52 14 0.07
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAGAAAATTGGTGTTTTGAAAATAAAATCGGA
Found at i:149405 original size:19 final size:18
Alignment explanation
Indices: 149377--149439 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
149367 AGCGATACAT
*
149377 TGTATTGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
149396 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
149409 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
149428 TGTATCGATACA
1 TGTATCGATACA
149440 TTTTCTGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
16 2 0.05
18 1 0.03
19 22 0.59
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:149410 original size:32 final size:32
Alignment explanation
Indices: 149369--149441 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
149359 AGTTTCGTAG
*
149369 CGATACATTGTATTGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
149401 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
149433 CGATACATT
1 CGATACATT
149442 TTCTGTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:149414 original size:13 final size:13
Alignment explanation
Indices: 149396--149420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
149386 ACAAAACTTA
149396 TGTATCGATACAT
1 TGTATCGATACAT
149409 TGTATCGATACA
1 TGTATCGATACA
149421 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:150201 original size:43 final size:44
Alignment explanation
Indices: 150142--150333 Score: 177
Period size: 43 Copynumber: 4.4 Consensus size: 44
150132 AAAAAAGTAC
150142 GTCCTGCT-TTTCGAGGA-AAAAGGAAAAAAGGAAAATGAAATGT
1 GTCCTGCTCTTT-GAGGACAAAAGGAAAAAAGGAAAATGAAATGT
* *
150185 GTCCTGCTCTTTGAGGACTAAAAGGGAAAAGAAGG-AAA-CAAA-GA
1 GTCCTGCTCTTTGAGGAC-AAAA-GGAAAA-AAGGAAAATGAAATGT
* * * *
150229 GCACCTTGCTCTTTGAGGAC-AAAGGAGAAAAGGAAAACGAAATGC
1 G-TCC-TGCTCTTTGAGGACAAAAGGAAAAAAGGAAAATGAAATGT
* * *
150274 GTCTTGCTCTTTAAGGACAAAA-G-AAAGAGGAAAAT-AAAGTGT
1 GTCCTGCTCTTTGAGGACAAAAGGAAAAAAGGAAAATGAAA-TGT
150316 GTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAC
150334 TACAAAGTGC
Statistics
Matches: 122, Mismatches: 15, Indels: 25
0.75 0.09 0.15
Matches are distributed among these distances:
41 3 0.02
42 31 0.25
43 35 0.29
44 15 0.12
45 11 0.09
46 23 0.19
47 4 0.03
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (44 bp):
GTCCTGCTCTTTGAGGACAAAAGGAAAAAAGGAAAATGAAATGT
Found at i:150401 original size:26 final size:26
Alignment explanation
Indices: 150372--150455 Score: 66
Period size: 28 Copynumber: 3.2 Consensus size: 26
150362 TTGAAAAGAA
150372 AAAGGCGTCCTGCTCTTTGAGGACTG
1 AAAGGCGTCCTGCTCTTTGAGGACTG
* ** * *
150398 AAAGGTG-CCACCAACTTGTGTGG-CTTTG
1 AAAGGCGTCCTGC-TCTT-TGAGGAC--TG
150426 AAAGGCGTCCTGCTCTTTGAGGACT-
1 AAAGGCGTCCTGCTCTTTGAGGACTG
150451 AAAGG
1 AAAGG
150456 GTGAGAAGAG
Statistics
Matches: 42, Mismatches: 10, Indels: 13
0.65 0.15 0.20
Matches are distributed among these distances:
25 8 0.19
26 11 0.26
27 8 0.19
28 12 0.29
29 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
AAAGGCGTCCTGCTCTTTGAGGACTG
Found at i:150515 original size:155 final size:156
Alignment explanation
Indices: 150316--151099 Score: 760
Period size: 155 Copynumber: 4.8 Consensus size: 156
150306 AATAAAGTGT
* * * *
150316 GTCCTGCTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCGTC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCATC
150381 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGT-GGCTTTGAAAGGCGTCCTGCTCTTTG
65 CTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
150445 AGGACT-AAAGGGTGAGAA-GAGAGAGC
129 AGGACTGAAAGGGTGAGAAGGAGAGAGC
* *
150471 GTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
150536 TACTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTAA
66 TGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
* *** *
150601 GGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG-GC
130 GGACT-G-AAA-G----------G-GTGAG-AAGGAGAGAGC
* *
150642 GTCTTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GCGTC
1 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATC
* * * * *
150705 CTGCTCTTTGAGGACTTGGAAGTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTTTTTT
65 CTGCTCTTTGAGGAC-TGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
** ** * * *
150770 AGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAGAGGT
129 AGGACT-GAAAGGGTGA--GA---A-G-GAG-----AGA-GC
* * * * *
150812 GTCATGCTCTTTGAGGACTAG-GGAGTGCCACCAACTGGAGTGGTCTTTAAAAGGAAAAGGCATC
1 GTCCTGCTCTTTGAGGACTAGAAG-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATC
* * * *
150876 CTGCTCTTTGAGGACTGAGAAGTGCCACTAACTTATGTGGGCTTTAAAAGGCGTCCTGCTCTTCG
65 CTGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
*
150941 AGGACT-AAAGGGTGA-AAGGAGAGAGT
129 AGGACTGAAAGGGTGAGAAGGAGAGAGC
* * * *
150967 GTCCTGCTCTTTGAGGACTAG-GGAGTGCCACCAACTGGAGTGGTCTTTAAAAGGAAAAGGCATC
1 GTCCTGCTCTTTGAGGACTAGAAG-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATC
* *
151031 CTGCTCTTTGAGGACTAAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
65 CTGCTCTTTGAGGACTGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
151096 AGGA
129 AGGA
151100 TAGGAAAATG
Statistics
Matches: 527, Mismatches: 63, Indels: 78
0.79 0.09 0.12
Matches are distributed among these distances:
154 46 0.09
155 206 0.39
156 3 0.01
157 1 0.00
158 3 0.01
159 1 0.00
161 2 0.00
162 1 0.00
163 2 0.00
166 1 0.00
168 2 0.00
169 9 0.02
170 130 0.25
171 116 0.22
172 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (156 bp):
GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
TGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAG
GACTGAAAGGGTGAGAAGGAGAGAGC
Found at i:150622 original size:55 final size:55
Alignment explanation
Indices: 150469--150946 Score: 430
Period size: 55 Copynumber: 8.4 Consensus size: 55
150459 AGAAGAGAGA
* * *
150469 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
* * * *
150530 ACATCCTACTCTTTGAGGACT-GAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
150585 GCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* *
150640 GCGTCTTGCTCTTTGAGGACT--AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA
1 GCGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-----GA-AAG
*
150700 GCGTCCTGCTCTTTGAGGACTTGG-AAGTGCCACCAACTTGTGTAGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGAC-TGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * * *
150755 GCATCCTGCTTTTTTAGGACTGGAAAATGCCACCAACTTATGTGGGCTTT-AAGAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AG
* * * * * *
150810 GTGTCATGCTCTTTGAGGACTAGG-GAGTGCCACCAACTGGAGTGGTCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
* * * *
150871 GCATCCTGCTCTTTGAGGACT-GAGAAGTGCCACTAACTTATGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAG
*
150926 GCGTCCTGCTCTTCGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
150947 AAAGGGTGAA
Statistics
Matches: 347, Mismatches: 46, Indels: 54
0.78 0.10 0.12
Matches are distributed among these distances:
53 3 0.01
54 27 0.08
55 173 0.50
56 7 0.02
59 3 0.01
60 23 0.07
61 107 0.31
62 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:150875 original size:116 final size:111
Alignment explanation
Indices: 150464--150947 Score: 489
Period size: 116 Copynumber: 4.2 Consensus size: 111
150454 GGGTGAGAAG
*
150464 AGAGAGCGTCCTACTCTTTGAGGACTA-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 AGAG-GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT-----G-AA
* * ** *
150528 AGACATCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGA
58 AGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAA
* * * *
150582 A-AGGCGTCCTGCTCTTTAAGGACT-GGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTC
1 AGAGGCGTCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
* *
150645 TTGCTCTTTGAGGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTAAA
65 CTGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTATGTGGGCTTT-AA
* *
150692 AGGAGAAAGCGTCCTGCTCTTTGAGGACTTGGAAGTGCCACCAACTTGTGTAGGCTTTGAAAGGC
1 A-GAG---GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGC
* * *
150757 ATCCTGCTTTTTTAGGACTG-GAAAATGCCACCAACTTATGTGGGCTTT-A
62 ATCCTGCTCTTTGAGGACTGAG-AAGTGCCACCAACTTATGTGGGCTTTAA
* * * * * *
150806 AGAGGTGTCATGCTCTTTGAGGACTAGGGAGTGCCACCAACTGGAGTGGTCTTTAAAAGGAAAAG
1 AGAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
*
150871 GCATCCTGCTCTTTGAGGACTGAGAAGTGCCACTAACTTATGTGGGCTTTAA
60 GCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAA
*
150923 A-AGGCGTCCTGCTCTTCGAGGACTA
1 AGAGGCGTCCTGCTCTTTGAGGACTA
150948 AAGGGTGAAA
Statistics
Matches: 310, Mismatches: 35, Indels: 44
0.80 0.09 0.11
Matches are distributed among these distances:
108 2 0.01
109 24 0.08
110 65 0.21
111 1 0.00
112 2 0.01
113 3 0.01
114 2 0.01
115 66 0.21
116 135 0.44
117 9 0.03
118 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (111 bp):
AGAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCC
TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTATGTGGGCTTTAA
Found at i:151112 original size:55 final size:55
Alignment explanation
Indices: 150967--151159 Score: 226
Period size: 55 Copynumber: 3.4 Consensus size: 55
150957 AGGAGAGAGT
* * * * * *
150967 GTCCTGCTCTTTGAGGACTAGGGAGTGCCACCAACTGGAGTGGTCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAGAAATGCCACCAACTCGTGTGGGCTTT-----G-AAAGGC
* *
151028 ATCCTGCTCTTTGAGGACTAAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
*
151083 GTCCTGCTCTTTGAGGA-TAGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTAAG-AAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
*
151138 GTCCTACTCTTTGAGGACTAAG
1 GTCCTGCTCTTTGAGGACTAAG
151160 GAGAAAAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
54 3 0.03
55 70 0.59
56 4 0.03
61 42 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTAAGAAATGCCACCAACTCGTGTGGGCTTTGAAAGGC
Found at i:151146 original size:27 final size:27
Alignment explanation
Indices: 151061--151146 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
151051 AGTGCCACCA
151061 ACTCGTGTGGGCTTTGAAAGGCGTCCT
1 ACTCGTGTGGGCTTTGAAAGGCGTCCT
* * * ** * ** *
151088 GCTC-TTTGAGGATAGGAAAATGCCACCA
1 ACTCGTGTG-GGCTTTG-AAAGGCGTCCT
151116 ACTCGTGTGGGCTTTGAAAGGCGTCCT
1 ACTCGTGTGGGCTTTGAAAGGCGTCCT
151143 ACTC
1 ACTC
151147 TTTGAGGACT
Statistics
Matches: 38, Mismatches: 18, Indels: 6
0.61 0.29 0.10
Matches are distributed among these distances:
26 3 0.08
27 18 0.47
28 14 0.37
29 3 0.08
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (27 bp):
ACTCGTGTGGGCTTTGAAAGGCGTCCT
Found at i:151343 original size:61 final size:60
Alignment explanation
Indices: 151163--151921 Score: 1003
Period size: 61 Copynumber: 12.5 Consensus size: 60
151153 GACTAAGGAG
* * *
151163 AAAAGGAAAAGGCGTCCTGCACTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
* *
151224 AAAAAGAAAAAAAAGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAAG---AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
151287 AAAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
* *
151348 AAAAAGAAAAGGCGTCCTGCTCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
151408 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
* *** * *
151469 AAAAGGAAAAAAATGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGATTT
1 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
151531 -----G-AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
151586 AAAAAGAAAAGGTGTCCTGCTTTTTGAGGACTAAAGGTGACACCAACTTGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
151646 AAAAGGAAAAGGTGTCGTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * ** *
151706 AAAAAGAAAAAGGTGTCCTACTCTTTGAGGATTGGAGGGGCCA-CAACTTGTGTGGGCTTT
1 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
151766 AAAAAGAAAAAAAGTGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAAG--AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
* **
151828 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTT
1 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
151889 GAAAATA-AAAAGGCGTCCTGCTCTTTGAGGACT
1 -AAAA-AGAAAAGGCGTCCTGCTCTTTGAGGACT
151922 GGAAGGGCTA
Statistics
Matches: 624, Mismatches: 57, Indels: 34
0.87 0.08 0.05
Matches are distributed among these distances:
55 48 0.08
57 1 0.00
60 189 0.30
61 256 0.41
62 73 0.12
63 33 0.05
64 24 0.04
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (60 bp):
AAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:151425 original size:121 final size:122
Alignment explanation
Indices: 151163--151921 Score: 1045
Period size: 121 Copynumber: 6.3 Consensus size: 122
151153 GACTAAGGAG
* *
151163 AAAAGGAAAAGGCGTCCTGCACTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
*
151228 AGAAAAAAAAGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
66 AG--AAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
* * *
151287 AAAAAGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTTTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
*
151352 AG-AAAAGGCGTCCTGCTCTTTAAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
66 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
*
151408 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
* *** * * *
151473 GGAAAAAAATGTCTTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGATTT
66 AGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTT
*
151531 -----G-AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * *
151590 AG-AAAAGGTGTCCTGCTTTTTGAGGACTAAAGGTGACACCAACTTGTGTGGGCTTT
66 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
* * *
151646 AAAAGGAAAAGGTGTCGTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTAAAA
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
* * * ** * *
151710 AGAAAAAGGTGTCCTACTCTTTGAGGATTGGAGGGGCCA-CAACTTGTGTGGGCTTT
66 AGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
* * * * *
151766 AAAAAGAAAAAAAGTGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTCGTGTGGGCTTTGA
1 -AAAAG-GAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAA
*
151830 AAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTT
64 AAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
**
151889 GAAAATAAAAAGGCGTCCTGCTCTTTGAGGACT
1 -AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACT
151922 GGAAGGGCTA
Statistics
Matches: 569, Mismatches: 54, Indels: 26
0.88 0.08 0.04
Matches are distributed among these distances:
115 26 0.05
116 22 0.04
117 57 0.10
118 1 0.00
120 51 0.09
121 171 0.30
122 134 0.24
123 45 0.08
124 62 0.11
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (122 bp):
AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
AGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTCGTGTGGGCTTT
Done.