Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1476
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43290
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Found at i:713 original size:259 final size:264
Alignment explanation
Indices: 1--867 Score: 1377
Period size: 260 Copynumber: 3.3 Consensus size: 264
*
1 TTCCGGGTGAAAATTATGTGCCCGGTC-GGGTACACAGTCCTCCATATAGATGAAAAATTACCTG
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTG
65 AATGTCTACTCATAGTATTTTTCAAAGAAGGGTCCTCTCTCGTAATCTCTTCACGCGGTAGAGAC
66 AATGTCTACTCATAGTA-TTTTCAAAGAAGGGT-CTCTCTCGT-ATCTCTTCACGCGGTAGAGA-
130 GCATTACTAGCCTCGG-CTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACG
127 -CATTACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAAC-
*
194 GCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTC-GTGCATGCATTTACCC-GGAC
190 GCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGAC
257 AGCGACACGG
255 AGCGACACGG
*
267 -TCCGGGTGAAAATTATGTGCCCGGTCTGGGGTACACAGTCCTCCATATA-A--AGAAATTAACC
1 TTCCGGGTGAAAATTATGTGCCCGGTC-GGGGTACACAGTCCTCCATATATATGAAAAATT-ACC
* *
328 TG-ATGTCTAATCATAGTATTTTTCAAAGAAGGGTCTCTCTTGTATCTCTTCACGC-GTAGACG-
64 TGAATGTCTACTCATAGTA-TTTTCAAAGAAGGGTCTCTCTCGTATCTCTTCACGCGGTAGA-GA
*
390 CATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGC
127 CATTACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGC
455 AATACGCACGTTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTTGCATGCATTTACCCGGGAC
192 AATACGCACG-TTTTCTTCGTATCAGTAGATAGACCGACCTCTC-TGCATGCATTTACCCGGGAC
520 AGCGACACGG
255 AGCGACACGG
530 TTCC-GGTGAAAATTA-GTGCCCGGTCGGGGTACACAGTCCTCCATATATATG-AAAATTAACCT
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATT-ACCT
592 GAATGTCTACTCATAGTA-TTTC-AAGAAGGGTCTCTCTCGTATCTCTTCACGCGGTAGAGACAT
65 GAATGTCTACTCATAGTATTTTCAAAGAAGGGTCTCTCTCGTATCTCTTCACGCGGTAGAGACAT
655 TACTAGCCTCGGACTCA-CCT-A-ATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAAT
130 TACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAAT
*
717 ACGCAAG-TTTCTTCGTATCAGTAGATA-ACCGACCTCTCTGCATGCATTTACCCGGGACAGCGA
195 ACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGACAGCGA
780 CACGG
260 CACGG
785 TTCCGGGTGAAAATTATGT-CCCGGTCGGGGTACACAGTCCTCC--ATATATGAAAAATTACCTG
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTG
*
847 AATGTGTACTCATAGTATTTT
66 AATGTCTACTCATAGTATTTT
868 TTTTTAAGAC
Statistics
Matches: 570, Mismatches: 11, Indels: 51
0.90 0.02 0.08
Matches are distributed among these distances:
254 28 0.05
255 43 0.08
256 46 0.08
257 22 0.04
259 73 0.13
260 79 0.14
261 60 0.11
262 67 0.12
263 44 0.08
264 55 0.10
265 31 0.05
266 1 0.00
267 21 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (264 bp):
TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTG
AATGTCTACTCATAGTATTTTCAAAGAAGGGTCTCTCTCGTATCTCTTCACGCGGTAGAGACATT
ACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATA
CGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGACAGCGAC
ACGG
Found at i:888 original size:259 final size:263
Alignment explanation
Indices: 1--893 Score: 1371
Period size: 259 Copynumber: 3.4 Consensus size: 263
1 TTCCGGGTGAAAATTATGTGCCCGGTC-GGGTACACAGTCCTCCATATAGATGAAAAATT-ACCT
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATAT--AT-AAAAATTAACCT
64 GAATGTCTACTCATAGTATTTTTCAAAGAAGGGTCCTCTCTCGTAATCTCTTCACGCGGTAGAGA
63 GAATGTCTACTCATAGTATTTTTCAAAGAAGGG-CCTCTCTCGT-ATCTCTTCACGCGGTAGAGA
129 CGCATTACTAGCCTCGG-CTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAAC
126 --CATTACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAAC
*
193 GGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTC-GTGCATGCATTTACCC-GGA
189 -GCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGA
256 CAGCGACACGG
253 CAGCGACACGG
267 -TCCGGGTGAAAATTATGTGCCCGGTCTGGGGTACACAGTCCTCCATATA-AAGAAATTAACCTG
1 TTCCGGGTGAAAATTATGTGCCCGGTC-GGGGTACACAGTCCTCCATATATAA-AAATTAACCTG
* * *
330 -ATGTCTAATCATAGTATTTTTCAAAGAAGGGTCTCTCTTGTATCTCTTCACGC-GTAGACG-CA
64 AATGTCTACTCATAGTATTTTTCAAAGAAGGGCCTCTCTCGTATCTCTTCACGCGGTAGA-GACA
*
392 TTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAA
128 TTACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAA
457 TACGCACGTTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTTGCATGCATTTACCCGGGACAG
193 TACGCACG-TTTTCTTCGTATCAGTAGATAGACCGACCTCTC-TGCATGCATTTACCCGGGACAG
522 CGACACGG
256 CGACACGG
530 TTCC-GGTGAAAATTA-GTGCCCGGTCGGGGTACACAGTCCTCCATATATATGAAAATTAACCTG
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATA--AAAATTAACCTG
*
593 AATGTCTACTCATAGTA--TTTC-AAGAAGGGTCTCTCTCGTATCTCTTCACGCGGTAGAGACAT
64 AATGTCTACTCATAGTATTTTTCAAAGAAGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACAT
655 TACTAGCCTCGGACTCA-CCT-A-ATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAAT
129 TACTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAAT
*
717 ACGCAAG-TTTCTTCGTATCAGTAGATA-ACCGACCTCTCTGCATGCATTTACCCGGGACAGCGA
194 ACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGACAGCGA
780 CACGG
259 CACGG
785 TTCCGGGTGAAAATTATGT-CCCGGTCGGGGTACACAGTCCTCCATATATGAAAAATT-ACCTGA
1 TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATAT-AAAAATTAACCTGA
* ** *
848 ATGTGTACTCATAGTATTTTTTTTTAAGACGGGCCTCTCTCGTATC
65 ATGTCTACTCATAGTA--TTTTTCAAAGAAGGGCCTCTCTCGTATC
894 CTTTAACGCA
Statistics
Matches: 589, Mismatches: 13, Indels: 57
0.89 0.02 0.09
Matches are distributed among these distances:
254 21 0.04
255 40 0.07
256 52 0.09
257 23 0.04
258 3 0.01
259 92 0.16
260 79 0.13
261 60 0.10
262 67 0.11
263 46 0.08
264 54 0.09
265 32 0.05
267 20 0.03
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (263 bp):
TTCCGGGTGAAAATTATGTGCCCGGTCGGGGTACACAGTCCTCCATATATAAAAATTAACCTGAA
TGTCTACTCATAGTATTTTTCAAAGAAGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACATTA
CTAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATAC
GCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTGCATGCATTTACCCGGGACAGCGACA
CGG
Found at i:1346 original size:141 final size:143
Alignment explanation
Indices: 962--3235 Score: 3492
Period size: 140 Copynumber: 16.1 Consensus size: 143
952 CAAATAACTA
* * *
962 GTTTTTGATTATAACTCTTAAATGGTTC-AAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
1026 ATTTTTATGTTC--TATA-TTTGTTTAATTCATTTTTTATATAAATTACTCCGTCGAGCGGTTTT
66 ATTTCTATGTTCTATATATTTTGTTTAATTCA-TTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
1088 AACGCTTTTTAGCG
130 GACGCTTTTTAGCG
*
1102 G-TTTCGATTATAACTCATAAATGGTTC-AAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* **
1165 ATTTTTTATGTTCTATATATTTTGTTT-ATTTTTTTTATATATAAATTACTCCGCCGAGCGG-TT
66 A-TTTCTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTACTCCGCCGAGCGGTTT
*
1228 TAACGCTTTTTTAGCG
129 TGACGC-TTTTTAGCG
*
1244 GTTTTC-AATAT-ACTCAT-AATGGTTCAAAATAGAGTCAAAAAGTTATAAGTATGA-CCCCTAT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTC-AAAAGTTATAAGTATGACCCCCTAT
* * * *
1305 TATTTTTATGTTCTATATA-TTTGTTTATTTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
65 CATTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
1369 GACGCTTTTTAGCG
130 GACGCTTTTTAGCG
1383 G-TTTCGATTATAA--CATAAATGGTTCAAAATAGAGTCAAAA-TTATAAGTA-GACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* **
1443 ATTT-TTTGTTCTATATA-TTTGTTT--TTTTTTTTATATATAAATTACTCCG-CGAGCGGTTTT
66 ATTTCTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTACTCCGCCGAGCGGTTTT
*
1503 AACGCTTTTTAGCG
130 GACGCTTTTTAGCG
* *
1517 GTTTTCAATTATAAC-CATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
1581 ATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
66 A-TTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
1646 GACGCTTTTTAGCG
130 GACGCTTTTTAGCG
*
1660 GTTTTCGGTAATT-TAACTCATAAATGGTTCAAAAATAGAGTCAAAAATTATAAGTATGACCCCC
1 GTTTTC-G--ATTATAACTCATAAATGGTTC-AAAATAGAGTCAAAAGTTATAAGTATGACCCCC
*
1724 TATCATTTTTTATG-TCTATATATTTTG-TTAATTCATTTTTATAT-AATTACTCCGCCGAGCGG
62 TATCA-TTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGG
1786 -TTTGACGCTTTTTAGCG
126 TTTTGACGCTTTTTAGCG
*
1803 GTTTTCGATTATAACTCATAAATGGTTC--AATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1866 ATTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTG
66 ATTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTG
1931 ACGCTTTTTAGCG
131 ACGCTTTTTAGCG
*
1944 G-TTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATT-TAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
2007 ATTTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTTT
66 A-TTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
2072 TGAACGCTTTTTAGCG
129 TG-ACGCTTTTTAGCG
2088 GTTTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTA
1 G--TTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTA
* *
2153 TCATTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTT
64 TCATTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTT
*
2218 TTAACGCTTTTTAGCG
128 TTGACGCTTTTTAGCG
2234 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAA-TTATAAGTATGA-CCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
*
2297 -TTTACTATGTTCTATATATTTTGTTTAATTC-TTTTTATATAAATTCCTCCGCCGAGCGG-TTT
66 ATTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
2359 GACGCTTTTTAGCG
130 GACGCTTTTTAGCG
2373 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC---C
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
2435 ATTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTTTT
66 ATTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
2500 AACGCTTTTTAGCG
130 GACGCTTTTTAGCG
*
2514 GTTTTCGATTATAACTCATATATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGA-CCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
2578 ATTTACTATGTTTCTATAT-TTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
66 ATTT-CTATG-TTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
2642 TGACGCTTTTTAGCG
129 TGACGCTTTTTAGCG
* *
2657 GTTTTCAATTATAACTCATAAATGG-TCAAAATAGAGTCAAAAGTTATAAGTA-GACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
2720 ATTTACTATGTTCTATATATTTTG-TTAATTCA-TTTTATATAAAATTACTCCGCCGAGCGGTTT
66 ATTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATAT-AAATTACTCCGCCGAGCGGTTT
2783 TGACG-TTTTTAGCG
129 TGACGCTTTTTAGCG
*
2797 GTTTTCGATTATAACTCATAAATGGTTC-AAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
*
2861 ATTACTATGTTC--TATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTG
66 ATTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTG
*
2924 ACGTTTTTTAGCG
131 ACGCTTTTTAGCG
*
2937 GTTTTCGATTAT-ACTCATAAATGGTTCAAAATAGAGTCAAAAGTTA-AAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
3000 ATTTACTATGTTCTATATATTTTGTTTTAATTCA--TTTATATAAATTACTCCGCCGAGCGGTTT
66 ATTT-CTATGTTCTATATATTTTG-TTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
3063 TGACGCTTTTTAGCG
129 TGACGCTTTTTAGCG
3078 GTTTTCGA-T-TAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
*
3141 ATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 A-TTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
3206 GACGCTTTTTAGCG
130 GACGCTTTTTAGCG
*
3220 GTTTTCGATTAGAACT
1 GTTTTCGATTATAACT
3236 TCCAAACAAG
Statistics
Matches: 2000, Mismatches: 60, Indels: 144
0.91 0.03 0.07
Matches are distributed among these distances:
134 30 0.01
135 27 0.01
136 48 0.02
137 36 0.02
138 81 0.04
139 303 0.15
140 349 0.17
141 349 0.17
142 217 0.11
143 240 0.12
144 86 0.04
145 21 0.01
146 42 0.02
147 152 0.08
148 19 0.01
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (143 bp):
GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
ATTTCTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTG
ACGCTTTTTAGCG
Found at i:2493 original size:280 final size:285
Alignment explanation
Indices: 962--4490 Score: 3718
Period size: 280 Copynumber: 12.3 Consensus size: 285
952 CAAATAACTA
* *
962 GTTTTTGATTATAACTCTTAAATGGTTC-AAATAGAGTCAAAAGTTATAAGTATGACCCCCT-AT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTCA-
** *
1025 TATTTTTATGTTC--TATA-TTTGTTTAATTCATTTTTTATATAAATTACTCCGTCGAGCGGTTT
65 T-TTACTATGTTCTATATATTTTGTTTAATTCA-TTTTTATATAAATTACTCCGCCGAGCGGTTT
1087 TAACGCTTTTTAGCGG-TTTCGATTATAACTCATAAATGGTTC-AAATAGAGTCAAAAATTATAA
128 TAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTC-AAAATTATAA
** **
1150 GTATGACCCCCTATCATTTTTTATGTTCTATATATTTTGTTT-ATTTTTTTTATATATAAATTAC
192 GTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTAC
*
1214 TCCGCCGAGCGG-TTTAACGCTTTTTTAGCG
256 TCCGCCGAGCGGTTTTGACGC-TTTTTAGCG
* * *
1244 GTTTTC-AATAT-ACTCAT-AATGGTTCAAAATAGAGTCAAAAAGTTATAAGTATGACCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTC-AAAAGTTATAAGTATGACCCC-CTC
* * *
1306 ATTT-TTATGTTCTATATA-TTTGTTTATTTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
64 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
1369 GACGCTTTTTAGCGG-TTTCGATTATAA--CATAAATGGTTCAAAATAGAGTCAAAATTATAAGT
129 AACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAATTATAAGT
* **
1431 A-GACCCCCTATCATTT--TTTGTTCTATATA-TTTGTTT--TTTTTTTTATATATAAATTACTC
194 ATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTACTC
*
1490 CG-CGAGCGGTTTTAACGCTTTTTAGCG
258 CGCCGAGCGGTTTTGACGCTTTTTAGCG
* *
1517 GTTTTCAATTATAAC-CATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--TC
** *
1581 ATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
64 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
1646 GACGCTTTTTAGCGGTTTTCGGTAATT-TAACTCATAAATGGTTCAAAAATAGAGTCAAAAATTA
129 AACGCTTTTTAGCGGTTTTC-G--ATTATAACTCATAAATGGTTC-AAAATAGAGTC-AAAATTA
**
1710 TAAGTATGACCCCCTATCATTTTTTATG-TCTATATATTTTG-TTAATTCATTTTTATAT-AATT
189 TAAGTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATT
1772 ACTCCGCCGAGCGG-TTTGACGCTTTTTAGCG
254 ACTCCGCCGAGCGGTTTTGACGCTTTTTAGCG
*
1803 GTTTTCGATTATAACTCATAAATGGTTC--AATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--TC
1866 ATTT-CTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
64 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
1930 GACGCTTTTTAGCGG-TTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATT-TAAG
129 AACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTC-AAAATTATAAG
* *
1993 TATGACCCCCTATCATTTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACT
193 TATGACCCCCTATCA-TTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACT
2058 CCGCCGAGCGGTTTTGAACGCTTTTTAGCG
257 CCGCCGAGCGGTTTTG-ACGCTTTTTAGCG
2088 GTTTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTA
1 G--TTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--
* *
2153 TCATTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTT
62 TCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTT
2218 TTAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAATTATAA
127 TTAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAATTATAA
*
2283 GTATGA-CCCCTATC-TTTACTATGTTCTATATATTTTGTTTAATTC-TTTTTATATAAATTCCT
192 GTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACT
2345 CCGCCGAGCGG-TTTGACGCTTTTTAGCG
257 CCGCCGAGCGGTTTTGACGCTTTTTAGCG
2373 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC-CAT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTCAT
* *
2437 TTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTTTTAA
66 TTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTAA
*
2502 CGCTTTTTAGCGGTTTTCGATTATAACTCATATATGGTTCAAAATAGAGTCAAAAGTTATAAGTA
131 CGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAA-TTATAAGTA
2567 TGA-CCCCTATCATTTACTATGTTTCTATAT-TTTTGTTTAATTCATTTTTATATAAATTACTCC
195 TGACCCCCTATCATTTACTATG-TTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCC
2630 GCCGAGCGGTTTTGACGCTTTTTAGCG
259 GCCGAGCGGTTTTGACGCTTTTTAGCG
* *
2657 GTTTTCAATTATAACTCATAAATGG-TCAAAATAGAGTCAAAAGTTATAAGTA-GACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--TC
2720 ATTTACTATGTTCTATATATTTTG-TTAATTCA-TTTTATATAAAATTACTCCGCCGAGCGGTTT
64 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATAT-AAATTACTCCGCCGAGCGGTTT
*
2783 TGACG-TTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTC-AAATAGAGTCAAAAGTTATAA
128 TAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAA-TTATAA
*
2846 GTATGACCCCCTATTA-TTACTATGTTC--TATATTTTGTTTAATTCATTTTTATATAAATTACT
192 GTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACT
*
2908 CCGCCGAGCGGTTTTGACGTTTTTTAGCG
257 CCGCCGAGCGGTTTTGACGCTTTTTAGCG
*
2937 GTTTTCGATTAT-ACTCATAAATGGTTCAAAATAGAGTCAAAAGTTA-AAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--TC
3000 ATTTACTATGTTCTATATATTTTGTTTTAATTCA--TTTATATAAATTACTCCGCCGAGCGGTTT
64 ATTTACTATGTTCTATATATTTTG-TTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
*
3063 TGACGCTTTTTAGCGGTTTTCGA-T-TAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAA
128 TAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAA-TTATAA
**
3126 GTATGACCCCCTATCATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACT
192 GTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACT
3191 CCGCCGAGCGGTTTTGACGCTTTTTAGCG
257 CCGCCGAGCGGTTTTGACGCTTTTTAGCG
* * ** * * **
3220 GTTTTCGATTAGAACTTCCAAACAAGCCCCCTTCATTGCCATGAACAATACAAATCATCATTTTT
1 GTTTTCGATTATAAC-T-CATA-AA-------TGGTT--C---AA-AATA-GAGTCA--A---AA
* ** * * * *
3285 GTTCATATAAT-TG-CACCATTGAGTGTTTGGGCTCT-TT-T-TATGTTTTGTTTTAA-TCATCG
44 GTT-ATA-AGTATGAC-CCCCTCA---TTT--ACTATGTTCTATATATTTTG-TTTAATTCAT--
* * * * * * ** *
3344 GTTTCAATATCGGGTCAAATGTTTAATAATAAGCC-CCTTATC-ATTGACTAATACTATTTGAGC
98 -TTT---TAT---AT-AAA----T--TACT---CCGCC-GAGCGGTT--TTAACGCT-TTTTAGC
* ** * * * *
3407 GTAATATTTTTATTATGCATCTTAACTCTTAAAACGGTTC-AAATAGAGCCCAAAAGTGTACAA-
142 G--GT-TTTCGATTA-------TAACTCAT-AAATGGTTCAAAATAGAG-TCAAAA-T-TATAAG
* *** * * * * * * * * *
3470 -AAGAAAACCTTTCGTTTACTTTGTAC--T-T-TTCTCTTTATATT-TTCTTTTACAT-AATTGC
193 TATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTA-ATTCAT-TTTTATATAAATTAC
* *
3528 TCCGTCGAGCGGTTTTAACGCTTTTTTAGCG
256 TCCGCCGAGCGGTTTTGACGC-TTTTTAGCG
* * * *
3559 GTTTTCAATTATAACTC-TTAACGGTTTCAAAATAGAGTTTAAAAGTTATAAGTATGACCCCCTA
1 GTTTTCGATTATAACTCATAAATGG-TTCAAAATAGAG-TCAAAAGTTATAAGTATGACCCCC--
* * ** *
3623 TCATTAACTATGTTCTATATA--TT-TTTAATTCATTTTTA-AT-AATCTGCTCCATCGAGCGTT
62 TCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAAT-TACTCCGCCGAGCGGT
* * * ** * * *
3683 TTTAACGCTTTTTAGCGGTTTTCAATAATAACTCTTAAACAGTTCAAAATAGAATTAAAAGTATA
126 TTTAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAATTATA
* *
3748 AGTATGACCCCCTATCATTTACTATGTTCTATATA-TTTATTCAATTTCATTTTTATAT-AATCT
191 AGTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAA-TTCATTTTTATATAAAT-T
* * *
3811 GCTCCGTCGAGCGG-TTTAACGCTTTTTAGCG
254 ACTCCGCCGAGCGGTTTTGACGCTTTTTAGCG
* * * *
3842 GTTTTCAATTAT-ACTCTTAAACGGTTCAAAATAGAGTTAAAAGTTATAA-TATGACCCCCT-AT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTCAT
* * * * *
3904 CATTACTATGTT-TATATA-TTTATTTAATTTCATTTTTAAAT-AACTGCTCCGTCGAGCGGTTT
66 --TTACTATGTTCTATATATTTTGTTTAA-TTCATTTTTATATAAATTACTCCGCCGAGCGGTTT
* * * *
3966 TAACGCTTTTTA-CGGTTTTCAATTATAACTCTTAAACGGTTC-AAATAGAGTTAAAAATTATAA
128 TAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAG-TCAAAATTATAA
* * * *
4029 GTATGACCCCCTATCATTAACTATGTTCTATATA-TTTATTTAATTCATTTTTGTAT-AATCTGC
192 GTATGACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAAT-TAC
** *
4092 TCCATCGAGCGGTTTTTAACGCTTTTTAGCG
256 TCCGCCGAGCGG-TTTTGACGCTTTTTAGCG
* * ** *
4123 GTTTTC-A-TAAAACTCTTAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCC--TC
* * * *
4186 ATTTACTATGTTCTATATA-TTTATTCAATTCATTTTTATAT-AATCTGCTCCGTCGAGCGGTTT
64 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAAT-TACTCCGCCGAGCGG-TT
* * *
4249 TTAACGCTTTTTAGCGGTTTTCGATTATAACTCTTAAA-CGTTGAAAATAGAGTCAAAAGTTATA
127 TTAACGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAA-TTATA
4313 AGTATGA-CCCCTATCATTCATAACTA-GTTTCTATATA--TTGTTTAA-TCAATTTTTATATAA
191 AGTATGACCCCCTATCATT--T-ACTATG-TTCTATATATTTTGTTTAATTC-ATTTTTATATAA
* *
4373 ATTACTCCGTCGAGCGGTTTTGACGCTTTTTAACG
251 ATTACTCCGCCGAGCGGTTTTGACGCTTTTTAGCG
** * *
4408 GTTTTGACGATTATAACTCTCATAACACAGTTCAAAATAGAGTTAAAACTTATAAGTATGACCCC
1 GTTTT--CGATTATAA--CTCATAA-ATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCC
*
4473 CTATCATTGACTATGTTC
61 C--TCATTTACTATGTTC
4491 ATAATTATAT
Statistics
Matches: 2866, Mismatches: 185, Indels: 382
0.83 0.05 0.11
Matches are distributed among these distances:
273 22 0.01
274 61 0.02
275 34 0.01
276 26 0.01
277 61 0.02
278 26 0.01
279 144 0.05
280 507 0.18
281 286 0.10
282 182 0.06
283 340 0.12
284 228 0.08
285 187 0.07
286 87 0.03
287 103 0.04
288 37 0.01
289 48 0.02
290 87 0.03
291 52 0.02
292 62 0.02
293 5 0.00
294 7 0.00
295 3 0.00
296 1 0.00
297 2 0.00
298 1 0.00
299 2 0.00
300 4 0.00
301 4 0.00
302 2 0.00
303 1 0.00
304 1 0.00
306 5 0.00
307 5 0.00
308 21 0.01
309 6 0.00
310 2 0.00
311 6 0.00
312 2 0.00
313 5 0.00
314 7 0.00
315 7 0.00
316 5 0.00
317 10 0.00
318 5 0.00
319 5 0.00
321 1 0.00
322 1 0.00
323 7 0.00
324 2 0.00
325 3 0.00
327 5 0.00
328 4 0.00
329 6 0.00
330 7 0.00
332 1 0.00
333 4 0.00
334 1 0.00
335 2 0.00
337 1 0.00
338 33 0.01
339 33 0.01
340 1 0.00
342 31 0.01
343 15 0.01
344 4 0.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (285 bp):
GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTCAT
TTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTTAA
CGCTTTTTAGCGGTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAATTATAAGTAT
GACCCCCTATCATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGC
CGAGCGGTTTTGACGCTTTTTAGCG
Found at i:3890 original size:142 final size:142
Alignment explanation
Indices: 3514--4490 Score: 1384
Period size: 142 Copynumber: 6.9 Consensus size: 142
3504 TTATATTTTC
*
3514 TTTTACATAAT-TGCTCCGTCGAGCGGTTTTAACGCTTTTTTAGCGGTTTTCAATTATAACTCTT
1 TTTTATATAATCTGCTCCGTCGAGCGGTTTTAACGC-TTTTTAGCGGTTTTCAATTATAACTCTT
* *
3578 -AACGGTTTCAAAATAGAGTTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATA
65 AAACAG-TTCAAAATAGAG-TTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATA
3642 TATTT-TTAATTCAT
128 TATTTATTAATTCAT
* * *
3656 TTTTA-ATAATCTGCTCCATCGAGCGTTTTTAACGCTTTTTAGCGGTTTTCAATAATAACTCTTA
1 TTTTATATAATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTA
*
3720 AACAGTTCAAAATAGAATTAAAAG-TATAAGTATGACCCCCTATCATTTACTATGTTCTATATAT
66 AACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATAT
3784 TTATTCAATTTCAT
131 TTATT-AA-TTCAT
3798 TTTTATATAATCTGCTCCGTCGAGCGG-TTTAACGCTTTTTAGCGGTTTTCAATTAT-ACTCTTA
1 TTTTATATAATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTA
*
3861 AACGGTTCAAAATAGAGTTAAAAGTTATAA-TATGACCCCCTATCA-TTACTATGTT-TATATAT
66 AACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATAT
3923 TTATTTAATTTCAT
131 TTA-TTAA-TTCAT
*
3937 TTTTAAATAA-CTGCTCCGTCGAGCGGTTTTAACGCTTTTTA-CGGTTTTCAATTATAACTCTTA
1 TTTTATATAATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTA
* * *
4000 AACGGTTC-AAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATAT
66 AACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATAT
4064 TTATTTAATTCAT
131 TTA-TTAATTCAT
* * *
4077 TTTTGTATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTC-A-TAAAACTCTT
1 TTTTATATAATCTGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTT
4140 AAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATA
65 AAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATA
4205 TTTATTCAATTCAT
130 TTTATT-AATTCAT
*
4219 TTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCGATTATAACTCTT
1 TTTTATATAATCTGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTT
* *
4284 AAAC-GTTGAAAATAGAGTCAAAAGTTATAAGTATGA-CCCCTATCATTCATAACTA-GTTTCTA
65 AAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATT--T-ACTATG-TTCTA
4346 TATATTGT-TTAA-TCAAT
126 TATATT-TATTAATTC-AT
* * * *
4363 TTTTATATAAAT-TACTCCGTCGAGCGGTTTTGACGCTTTTTAACGGTTTTGACGATTATAACTC
1 TTTTATAT-AATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTT--CAATTATAACTC
* *
4427 TCATAACACAGTTCAAAATAGAGTTAAAACTTATAAGTATGACCCCCTATCATTGACTATGTTC
63 T--TAA-ACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTC
4491 ATAATTATAT
Statistics
Matches: 767, Mismatches: 33, Indels: 65
0.89 0.04 0.08
Matches are distributed among these distances:
138 50 0.07
139 112 0.15
140 43 0.06
141 138 0.18
142 215 0.28
143 81 0.11
144 41 0.05
145 33 0.04
146 1 0.00
147 10 0.01
148 3 0.00
149 29 0.04
150 11 0.01
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (142 bp):
TTTTATATAATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTA
AACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATAT
TTATTAATTCAT
Found at i:5661 original size:22 final size:24
Alignment explanation
Indices: 5633--5700 Score: 104
Period size: 22 Copynumber: 2.9 Consensus size: 24
5623 GAAAAAGTAG
5633 AAGTGTACTCATAGAAAAAA-AAA
1 AAGTGTACTCATAGAAAAAATAAA
5656 AA-TGTACTCATAGAAAAAATAAA
1 AAGTGTACTCATAGAAAAAATAAA
* *
5679 AAGTGTACTCATATAAACAATA
1 AAGTGTACTCATAGAAAAAATA
5701 TTTTTCTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 17 0.41
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.22
Consensus pattern (24 bp):
AAGTGTACTCATAGAAAAAATAAA
Found at i:5700 original size:24 final size:23
Alignment explanation
Indices: 5633--5700 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 23
5623 GAAAAAGTAG
5633 AAGTGTACTCATAGAAAAA-AAA
1 AAGTGTACTCATAGAAAAATAAA
*
5655 AAATGTACTCATAGAAAAAATAAA
1 AAGTGTACTCATAG-AAAAATAAA
*
5679 AAGTGTACTCATATAAACAATA
1 AAGTGTACTCATAGAAA-AATA
5701 TTTTTCTTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
22 13 0.32
23 8 0.20
24 19 0.47
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.22
Consensus pattern (23 bp):
AAGTGTACTCATAGAAAAATAAA
Found at i:12825 original size:12 final size:12
Alignment explanation
Indices: 12808--12841 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
12798 TGTGCAACGT
12808 TTTTTTTTTTTG
1 TTTTTTTTTTTG
12820 TTTTTTTTTTTG
1 TTTTTTTTTTTG
12832 TTTTTTTTTT
1 TTTTTTTTTT
12842 CTTTATGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:12860 original size:1 final size:1
Alignment explanation
Indices: 12807--12841 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
12797 TTGTGCAACG
* *
12807 TTTTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12842 CTTTATGTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:16704 original size:174 final size:174
Alignment explanation
Indices: 16407--17757 Score: 2603
Period size: 174 Copynumber: 7.8 Consensus size: 174
16397 ACCATCTCAT
*
16407 ATATATATGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* * *
16472 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCGTCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
16537 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
16581 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* *
16646 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
16711 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
16755 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
*
16820 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGAACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
16885 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
16929 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* *
16994 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
17059 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
17103 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
17168 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
17233 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
17277 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
17342 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
17407 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
*
17451 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATGTTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
*
17516 GTTAACGCATTAGCGGTTATCTACAACGGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
17581 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
17625 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
17690 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
17755 TAA
131 TAA
17758 GTACGGGAGT
Statistics
Matches: 1163, Mismatches: 14, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 1163 1.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.24
Consensus pattern (174 bp):
ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
Found at i:18609 original size:455 final size:455
Alignment explanation
Indices: 17758--20355 Score: 5034
Period size: 455 Copynumber: 5.7 Consensus size: 455
17748 CGGCAAATAA
* *
17758 GTACGGGAGTCTCCCCGCAGCTTAAAAAATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
17823 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
*
17888 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGAAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
*
17953 TTCCGCGTGGAAGCCTTATTACAAGCCTGGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
18018 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
18083 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
*
18148 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGTTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
**
18213 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTGTGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
18278 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
18343 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
* *
18408 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCCTAATATCTATTTTGTTTACGTTCTTA
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
18473 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
*
18538 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
18603 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
18668 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
18733 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
18798 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
*
18863 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
*
18928 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
18993 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
19058 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
* *
19123 GTACGGGAGTCTCCCTGCAGCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
19188 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
19253 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
19318 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
19383 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
* *
19448 GCATTGACCCGGGACAGCAACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
19513 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
*
19578 GTACGGGAGTCTCCCCGCAGCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
19643 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
19708 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
19773 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
19838 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
*
19903 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
19968 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
20033 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
20098 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
20163 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
20228 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
20293 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGC
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGC
20356 TTAAAATATC
Statistics
Matches: 2117, Mismatches: 26, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
455 2117 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (455 bp):
GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
Found at i:20601 original size:302 final size:302
Alignment explanation
Indices: 20055--20653 Score: 1189
Period size: 302 Copynumber: 2.0 Consensus size: 302
20045 CCCCGCAGCA
20055 TAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGACTG
1 TAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGACTG
20120 ACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCA
66 ACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCA
*
20185 AAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATTAC
131 AAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATTAC
20250 AAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATACG
196 AAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATACG
20315 CACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCT
261 CACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCT
20357 TAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGACTG
1 TAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGACTG
20422 ACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCA
66 ACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCA
20487 AAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATTAC
131 AAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATTAC
20552 AAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATACG
196 AAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATACG
20617 CACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTT
261 CACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTT
20654 CTGCATGCAT
Statistics
Matches: 296, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
302 296 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (302 bp):
TAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGACTG
ACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCA
AAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATTAC
AAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATACG
CACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCT
Found at i:21051 original size:757 final size:757
Alignment explanation
Indices: 19597--21112 Score: 2996
Period size: 757 Copynumber: 2.0 Consensus size: 757
19587 TCTCCCCGCA
19597 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
19662 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
*
19727 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
19792 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
*
19857 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
19922 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
19987 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
20052 GCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
456 GCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20117 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
521 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20182 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
586 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
*
20247 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
651 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
20312 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTT
716 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTT
20354 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20419 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20484 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
20549 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
20614 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
20679 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
20744 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
*
20809 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
456 GCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20874 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
521 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20939 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
586 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
21004 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
651 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
21069 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTT
716 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTT
21111 GC
1 GC
21113 ATGCATTGAC
Statistics
Matches: 755, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
757 755 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (757 bp):
GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
GCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTT
Found at i:21205 original size:455 final size:455
Alignment explanation
Indices: 20354--22976 Score: 4790
Period size: 455 Copynumber: 5.8 Consensus size: 455
20344 GACCTCTTTT
20354 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20419 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
*
20484 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
*
20549 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
20614 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
* *
20679 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
20744 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
20809 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20874 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20939 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
21004 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
*
21069 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
*
21134 ACACTGTTCCCGGTGAAAATTAAGTTCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
*
21199 CTTTAACTCGGACAGCCACTCTGTTCCGGCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
21264 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
21329 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
* *
21394 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCCTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
21459 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
21524 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
* *
21589 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
21654 CTTTAACTCGGACAGCCACTCTGTTCCG-CTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
21718 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
21783 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
21848 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
*
21913 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
*
21978 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
22043 ACACTGTTCCCGGTGAAAATTAAGT-CCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
22107 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
22172 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
22237 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
22302 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
22367 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
22432 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
22497 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
* *
22562 CTTTAACTCGGACAGCCACTCTGTTCCGCGTGAAAGTTTCGTT-CCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
*
22626 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACAATCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
22691 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
* *
22756 TCAAAAGAAGGGCCTCTCTTGTATCTCTTCACGCGGT--AGA-G-A------C------G-C--A
131 TC-AAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTA
* * *
22802 TTACAAGCCTCGGAATCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAA
195 TTACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAA
* * *
22867 TACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTC-TCTTGCATGCATTTACCCGGGACAG
260 TACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTC-TGCATGCATTGACCCGGGACAG
* * * * *
22931 CGACACGGTTCCGGGTGAAAATTATGTGGCCCGGTCGGGG-TACACA
324 CCACACTGTTCCCGGTGAAAATTAAGT-CCCCGGTCGGGGATACACA
22977 GTCCTCCATA
Statistics
Matches: 2126, Mismatches: 37, Indels: 29
0.97 0.02 0.01
Matches are distributed among these distances:
435 2 0.00
436 150 0.07
437 11 0.01
438 1 0.00
439 1 0.00
445 1 0.00
451 1 0.00
452 1 0.00
453 70 0.03
454 916 0.43
455 972 0.46
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (455 bp):
GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
Found at i:22454 original size:908 final size:908
Alignment explanation
Indices: 20354--22976 Score: 4856
Period size: 908 Copynumber: 2.9 Consensus size: 908
20344 GACCTCTTTT
20354 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20419 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20484 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
*
20549 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
20614 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
20679 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
20744 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCG-CTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
20809 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
455 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
20874 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
520 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
20939 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
585 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
*
21004 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
650 TACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
21069 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCC
715 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCC
21134 ACACTGTTCCCGGTGAAAATTAAGTTCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
780 ACACTGTTCCCGGTGAAAATTAAG-TCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
*
21199 CTTTAACTCGGACAGCCACTCTGTTCCGGCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
844 CTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
21264 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
21329 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
*
21394 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCCTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
21459 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
21524 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
21589 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
21654 CTTTAACTCGGACAGCCACTCTGTTCCGCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCAG
391 CTTTAACTCGGACAGCCACTCTGTTCCGCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCAG
21719 CTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGAC
456 CTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGAC
21784 TGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTT
521 TGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTT
21849 CAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATT
586 CAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATT
21914 ACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATA
651 ACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATA
21979 CGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCCA
716 CGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCCA
22044 CACTGTTCCCGGTGAAAATTAAGTCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATGCT
781 CACTGTTCCCGGTGAAAATTAAGTCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATGCT
22109 TTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
846 TTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
22172 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
1 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
22237 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
66 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
*
22302 TCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
131 TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
22367 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
196 TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
22432 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
261 ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
* *
22497 ACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
326 ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
*
22562 CTTTAACTCGGACAGCCACTCTGTTCCGCGTGAAAGTTTCGTT-CCGTACGGGAGTCTCCCCGCA
391 CTTTAACTCGGACAGCCACTCTGTTCCGC-TGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
*
22626 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACAATCTCCATGAAGA
455 GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
22691 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
520 CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
* *
22756 TCAAAAGAAGGGCCTCTCTTGTATCTCTTCACGCGGT--AGA-G-A------C------G-C--A
585 TC-AAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTA
* *
22802 TTACAAGCCTCGGAATCACCCTAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAA
649 TTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAA
* * * *
22867 TACGCACGTTTTCTTCGTATCAGTAGATAGACCGACCTCTCTTGCATGCATTTACCCGGGACAGC
714 TACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGC
* * * *
22932 GACACGGTTCCGGGTGAAAATTATGTGGCCCGGTCGGGG-TACACA
779 CACACTGTTCCCGGTGAAAATTAAGT--CCCGGTCGGGGATACACA
22977 GTCCTCCATA
Statistics
Matches: 1687, Mismatches: 22, Indels: 27
0.97 0.01 0.02
Matches are distributed among these distances:
890 147 0.09
891 6 0.00
892 12 0.01
893 1 0.00
899 1 0.00
905 1 0.00
906 1 0.00
907 3 0.00
908 671 0.40
909 428 0.25
910 416 0.25
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (908 bp):
GCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGA
CTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
TCAAAGACGGGCCTCTCTCGAATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTAT
TACAAGCCTCGGACTCAACCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAAT
ACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCATGCATTGACCCGGGACAGCC
ACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATG
CTTTAACTCGGACAGCCACTCTGTTCCGCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCAG
CTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCATATACACTCTCCATGAAGAC
TGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTT
CAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCGCGTGGAAGCCTTATT
ACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGCCCCTATATAGAACGCAATA
CGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATGCATTGACCCGGGACAGCCA
CACTGTTCCCGGTGAAAATTAAGTCCCGGTCGGGGATACACATAGACCGGTCTCTCTTGCATGCT
TTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCGTACGGGAGTCTCCCCGCA
Found at i:23377 original size:268 final size:266
Alignment explanation
Indices: 22706--24095 Score: 2467
Period size: 268 Copynumber: 5.2 Consensus size: 266
22696 CAGTCAACAG
*
22706 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAAAAGAAGGGCCT
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTTC-AAAGAAGGGTCT
*
22771 CTCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGAATCACCCTAATATCTATTTT
63 CTCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTT
22836 GTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCG
128 GTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCG
22901 ACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGGCCCGGT
193 ACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGT-GCCCGGT
22966 CGGGGTACAC
257 CGGGGTACAC
22976 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAG-TATTTTCAAAGAAGGGTCTC
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAGAT-TTTTCAAAGAAGGGTCTC
23040 -CTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTG
64 TCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTG
23104 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGG
129 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACC-G
23169 ACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTG-AAATTATGTGCCCGGTC
193 ACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTC
23233 GGGGGTACAC
258 -GGGGTACAC
23243 AGTCCTCC-A-ATATGAAAAATTACCTGAATGTCTACTCATAG-TTTTTCAAAGAAGGGTCTCTC
1 AGTCCTCCAATATATGAAAAATTACCTGAATGTCTACTCATAGATTTTTCAAAGAAGGGTCTCTC
*
23305 TCGTATCTCTTCACGCGGTAGAGACGCATTACATTA-CTAGCTCGGACTCACCCTAATATCTATT
66 TTGTATCTCTTCACGCGGTAGAGACGCATTACA--AGC---CTCGGACTCACCCTAATATCTATT
23369 TTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTC-TCGTATCAGTAGATAGAC
126 TTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGAC
23433 CGACCTCTCTT-CATGC-TTTACCCGGGACAGCGACACGGTTCCGGGTGTGAAAATTATGTGCCC
191 CGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCC-GG-GTGAAAATTATGTGCCC
23496 GGTCGGGGTACAC
254 GGTCGGGGTACAC
23509 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAAAGAAGGGTCTC
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTTCAAAGAAGGGTCTC
23574 TCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTG
64 TCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTG
23639 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGA
129 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGA
23704 CCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTCG
194 CCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTCG
23769 GGGTACAC
259 GGGTACAC
23777 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAAAGAAGGGTCTC
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTTCAAAGAAGGGTCTC
* *
23842 TCTCGTATCTCTTCACGCGGTAGAGACGCATTACTAGCCTCGGACTCACCCTAATATCTATTTTG
64 TCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTG
23907 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGA
129 TTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGA
23972 CCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTCG
194 CCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTCG
24037 GGGTACAC
259 GGGTACAC
*
24045 AGTCCTCCATATATATGAAAAATTACCTGAATGTGTACTCATAGTATTTTT
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTT
24096 TTTTAAGACG
Statistics
Matches: 1092, Mismatches: 7, Indels: 44
0.96 0.01 0.04
Matches are distributed among these distances:
263 18 0.02
264 92 0.08
265 9 0.01
266 39 0.04
267 258 0.24
268 507 0.46
269 45 0.04
270 71 0.07
271 53 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (266 bp):
AGTCCTCCAATATATGAAAAATTACCTGAATGTCTACTCATAGATTTTTCAAAGAAGGGTCTCTC
TTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTT
TACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGACCGACC
TCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGGTCGGG
GTACAC
Found at i:23757 original size:535 final size:538
Alignment explanation
Indices: 22706--24095 Score: 2512
Period size: 535 Copynumber: 2.6 Consensus size: 538
22696 CAGTCAACAG
*
22706 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAAAAGAAGGGCCT
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTTC-AAAGAAGGGTCT
* *
22771 CTCTTGTATCTCTTCACGCGGTAGAGACGCATTAC---A--AGCCTCGGAATCACCCTAATATCT
63 CTCTCGTATCTCTTCACGCGGTAGAGACGCATTACATTACTAGCCTCGGACTCACCCTAATATCT
22831 ATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATA
128 ATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATA
22896 GACCGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGGC
193 GACCGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGT-GC
22961 CCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTA-TTT
257 CCGGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTT
23025 TCAAAGAAGGGTCTCCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCC
322 TCAAAGAAGGGTCTCCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCC
23090 TAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATC
387 TAATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATC
23155 AGTAGATAGACCGGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAT
452 AGTAGATAGACCGGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAT
23220 TATGTGCCCGGTCGGGGGTACAC
517 TATGTGCCCGGTC-GGGGTACAC
23243 AGTCCTCC-A-ATATGAAAAATTACCTGAATGTCTACTCATAG-TTTTTCAAAGAAGGGTCTCTC
1 AGTCCTCCAATATATGAAAAATTACCTGAATGTCTACTCATAGATTTTTCAAAGAAGGGTCTCTC
23305 TCGTATCTCTTCACGCGGTAGAGACGCATTACATTACTAG-CTCGGACTCACCCTAATATCTATT
66 TCGTATCTCTTCACGCGGTAGAGACGCATTACATTACTAGCCTCGGACTCACCCTAATATCTATT
23369 TTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTC-TCGTATCAGTAGATAGAC
131 TTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGAC
23433 CGACCTCTCTT-CATGC-TTTACCCGGGACAGCGACACGGTTCCGGGTGTGAAAATTATGTGCCC
196 CGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCC-GG-GTGAAAATTATGTGCCC
23496 GGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTC
259 GGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTC
23561 AAAGAAGGGTCTCTCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCT
324 AAAGAAGGGTCTC-CTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCT
23626 AATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCA
388 AATATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCA
23691 GTAGATAGACC-GACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAAT
453 GTAGATAGACCGGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTG-AAAT
23755 TATGTGCCCGGTCGGGGTACAC
517 TATGTGCCCGGTCGGGGTACAC
23777 AGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAAAGAAGGGTCTC
1 AGTCCTCCA-ATATATGAAAAATTACCTGAATGTCTACTCATAG-ATTTTTCAAAGAAGGGTCTC
23842 TCTCGTATCTCTTCACGCGGTAGAGACG-----CATTACTAGCCTCGGACTCACCCTAATATCTA
64 TCTCGTATCTCTTCACGCGGTAGAGACGCATTACATTACTAGCCTCGGACTCACCCTAATATCTA
23902 TTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAG
129 TTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAG
23967 ACCGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCC
194 ACCGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCC
*
24032 GGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTGTACTCATAGTATTTTT
259 GGTCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTT
24096 TTTTAAGACG
Statistics
Matches: 830, Mismatches: 4, Indels: 39
0.95 0.00 0.04
Matches are distributed among these distances:
531 45 0.05
532 32 0.04
533 70 0.08
534 167 0.20
535 284 0.34
536 112 0.13
537 47 0.06
538 26 0.03
539 47 0.06
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (538 bp):
AGTCCTCCAATATATGAAAAATTACCTGAATGTCTACTCATAGATTTTTCAAAGAAGGGTCTCTC
TCGTATCTCTTCACGCGGTAGAGACGCATTACATTACTAGCCTCGGACTCACCCTAATATCTATT
TTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTAGATAGAC
CGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAAATTATGTGCCCGG
TCGGGGTACACAGTCCTCCATATATATGAAAAATTACCTGAATGTCTACTCATAGTATTTTTCAA
AGAAGGGTCTCCTTGTATCTCTTCACGCGGTAGAGACGCATTACAAGCCTCGGACTCACCCTAAT
ATCTATTTTGTTTACGTTCTTGCGCCTATATAGAACGCAATACGCACGTTTTCTTCGTATCAGTA
GATAGACCGGACCTCTCTTGCATGCATTTACCCGGGACAGCGACACGGTTCCGGGTGAAATTATG
TGCCCGGTCGGGGTACAC
Found at i:24669 original size:144 final size:144
Alignment explanation
Indices: 24190--26363 Score: 3843
Period size: 144 Copynumber: 15.1 Consensus size: 144
24180 CAAATAACTA
* * *
24190 GTTTTTGATTATAACTCTTAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** *
24255 ATTTTTTATGTTCTATATA-TTTGTTTAATTCATTTTTATATAAATTACTCCGTCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
24319 AACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
24333 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** **
24398 ATTTTTTATGTTCTATATATTTTGTTT-ATTTTTTTTATATATAAATTACTCCGCCGAGCGGTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTACTCCGCCGAGCGGTTT
*
24462 TAACGC-TTTTAGCG
130 TGACGCTTTTTAGCG
* *
24476 GTTTTCAATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** * *
24541 ATTTTTTATGTTCTATATATTTTGTTTATTTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
24606 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
24620 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** **
24685 ATTTTTTATGTTCTATATATTTTGTTT-ATTTTTTTTATATATAAATTACTCCGCCGAGCGGTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTT-TATATAAATTACTCCGCCGAGCGGTTT
*
24749 TAACGCTTTTTAGCG
130 TGACGCTTTTTAGCG
* *
24764 GTTTTCAATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** *
24829 ATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTCT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
24894 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
24908 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
** *
24973 ATTTTTTATGTTCTATATATTTTGTATAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
25038 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
25052 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
25117 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
25182 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
25196 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
25261 ATTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
25326 AACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
25340 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAATTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
25405 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
25470 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
25484 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
* *
25549 ATTTACTATGTTCTATATATTTTGTTTAATTTATTTTTACATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
25614 AACGCTTTTTAGCG
131 GACGCTTTTTAGCG
*
25628 GTTTTCGATTATAACTCATATATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
25693 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
25758 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
* *
25772 GTTTTCAATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
25837 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
25902 GACGTTTTTTAGCG
131 GACGCTTTTTAGCG
*
25916 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
25981 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
*
26046 GACGTTTTTTAGCG
131 GACGCTTTTTAGCG
*
26060 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATT
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
26125 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
26190 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
26204 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
1 GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
**
26269 ATTTTTTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
66 ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
26334 GACGCTTTTTAGCG
131 GACGCTTTTTAGCG
26348 GTTTTCGATTATAACT
1 GTTTTCGATTATAACT
26364 TCCAAACAAG
Statistics
Matches: 1962, Mismatches: 63, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
143 221 0.11
144 1734 0.88
145 7 0.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (144 bp):
GTTTTCGATTATAACTCATAAATGGTTCAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATC
ATTTACTATGTTCTATATATTTTGTTTAATTCATTTTTATATAAATTACTCCGCCGAGCGGTTTT
GACGCTTTTTAGCG
Found at i:26874 original size:144 final size:143
Alignment explanation
Indices: 26665--27660 Score: 1609
Period size: 144 Copynumber: 6.9 Consensus size: 143
26655 TTACATAAAT
*
26665 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACGGTTCAAAA
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
26730 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
66 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
*
26795 TTTTTAAATAATC
131 TTTTTATATAATC
* *
26808 TGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATAATAACTCTTAAACAGTTCAAA
1 TGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAA
* * *
26873 ATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATATTTATTCAATTC
65 ATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTC
26938 ATTTTTATATAATC
130 ATTTTTATATAATC
*
26952 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACGGTTCAAAA
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
27017 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
66 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
*
27082 TTTTTAAATAATC
131 TTTTTATATAATC
* *
27095 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTTCAATTATAACTCTTAAACGGTTCAAAA
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
*
27160 TAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
66 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
*
27225 TTTTTGTATAATC
131 TTTTTATATAATC
* *
27238 TGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATAATAACTCTTAAACAGTTCAAA
1 TGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAA
* *
27303 ATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATATTTATTCAATTC
65 ATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTC
27368 ATTTTTATATAATC
130 ATTTTTATATAATC
* *
27382 TGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCGATTATAACTCTTAAACAGTTGAAA
1 TGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAA
* *
27447 ATAGAGTCAAAAGTTATAAGTATGACCCCCTATCATTCATTAACTATGTTCTATATATTTGTTTA
65 ATAGAGTTAAAAGTTATAAGTATGACCCCC--T-A-TCATTAACTATGTTCTATATATTTATTTA
27512 A-TCAATTTTTATATAAAT-
126 ATTC-ATTTTTATAT-AATC
* * * *
27530 TACTCCGTCGAGCGGTTTTGACGCTTTTTAACGGTTTTGACGATTATAACTCTCATAACACAGTT
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTT--CAATTATAACTCT--TAA-ACAGTT
* *
27595 CAAAATAGAGTTAAAACTTATAAGTATGACCCCCTATCATTGACTATGTTCTATATATTTATTTA
61 CAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTA
27660 A
126 A
27661 AATTTAAACC
Statistics
Matches: 798, Mismatches: 42, Indels: 21
0.93 0.05 0.02
Matches are distributed among these distances:
143 289 0.36
144 347 0.43
146 1 0.00
147 24 0.03
148 79 0.10
149 17 0.02
150 1 0.00
151 3 0.00
152 37 0.05
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.40
Consensus pattern (143 bp):
TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
TTTTTATATAATC
Found at i:27082 original size:287 final size:287
Alignment explanation
Indices: 26665--27660 Score: 1629
Period size: 287 Copynumber: 3.4 Consensus size: 287
26655 TTACATAAAT
*
26665 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACGGTTCAAAA
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
26730 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
66 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
* *
26795 TTTTTAAATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATAATAACTCT
131 TTTTTAAATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCT
*
26860 TAAACAGTTCAAAATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATAT
196 TAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATAT
*
26925 ATTTATTCAATTCATTTTTATATAATC
261 ATTTATTTAATTCATTTTTATATAATC
*
26952 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACGGTTCAAAA
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
27017 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
66 TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
*
27082 TTTTTAAATAATCTGCTCCGTCGAGCGG-TTTTAACGCTTTTTAACGGTTTTCAATTATAACTCT
131 TTTTTAAATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCT
* * *
27146 TAAACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATAT
196 TAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATAT
*
27211 ATTTATTTAATTCATTTTTGTATAATC
261 ATTTATTTAATTCATTTTTATATAATC
* *
27238 TGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATAATAACTCTTAAACAGTTCAAA
1 TGCTCCGTCGAGCGG-TTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAA
* *
27303 ATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATATATTTATTCAATTC
65 ATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTC
* *
27368 ATTTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCGATTATAACTC
130 ATTTTTAAATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTC
* *
27433 TTAAACAGTTGAAAATAGAGTCAAAAGTTATAAGTATGACCCCCTATCATTCATTAACTATGTTC
195 TTAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCA-T--TT-ACTATGTTC
*
27498 TATATATTTGTTTAA-TCAATTTTTATATAAAT-
256 TATATATTTATTTAATTC-ATTTTTATAT-AATC
* * * *
27530 TACTCCGTCGAGCGGTTTTGACGCTTTTTAACGGTTTTGACGATTATAACTCTCATAACACAGTT
1 TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTT--CAATTATAACTCT--TAA-ACAGTT
* *
27595 CAAAATAGAGTTAAAACTTATAAGTATGACCCCCTATCATTGACTATGTTCTATATATTTATTTA
61 CAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTA
27660 A
126 A
27661 AATTTAAACC
Statistics
Matches: 663, Mismatches: 33, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
286 134 0.20
287 295 0.44
288 78 0.12
289 1 0.00
291 24 0.04
292 45 0.07
293 14 0.02
295 3 0.00
296 69 0.10
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.40
Consensus pattern (287 bp):
TGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAA
TAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATATTTATTTAATTCA
TTTTTAAATAATCTGCTCCGTCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCT
TAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTACTATGTTCTATAT
ATTTATTTAATTCATTTTTATATAATC
Found at i:27366 original size:430 final size:434
Alignment explanation
Indices: 26653--27660 Score: 1740
Period size: 430 Copynumber: 2.3 Consensus size: 434
26643 TATTATTTTC
* *
26653 TTTTACATAAATTGCTCCGTCGAGCGGTTTTAACGCTTTTTAGCGGTTTTCAATTATAACTCTTA
1 TTTTAAATAAATTGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTTCAATTATAACTCTTA
*
26718 AACGGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTAACTATGTTCTATATAT
66 AACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATAT
26783 TTATTTAATTCATTTTTAAATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTC
131 TTATTTAATTCATTTTTAAATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTC
26848 AATAATAACTCTTAAACAGTTCAAAATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTAC
196 AATAATAACTCTTAAACAGTTCAAAATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTAC
26913 TATGTTCTATATATTTATTCAATTCATTTTTATATAATCTGCTCCGTCGAGCGG-TTTTAACGCT
261 TATGTTCTATATATTTATTCAATTCATTTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGCT
* *
26977 TTTTAGCGGTTTTCAATTATAACTCTTAAACGGTTCAAAATAGAGTTAAAAGTTATAAGTATGAC
326 TTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAATAGAGTCAAAAGTTATAAGTATGAC
27042 CCCC-T-A-TCATTAACTATGTTCTATATATTTATTTAATTC-AT
391 CCCCATCATTCATTAACTATGTTCTATATATTTATTTAA-TCAAT
27083 TTTTAAAT-AATCTGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTTCAATTATAACTCTT
1 TTTTAAATAAAT-TGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTTCAATTATAACTCTT
27147 AAACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATA
65 AAACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATA
**
27212 TTTATTTAATTCATTTTTGTATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTT
130 TTTATTTAATTCATTTTTAAATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTT
*
27277 CAATAATAACTCTTAAACAGTTCAAAATAGAGTTAAAAGTTATAAGTATGACCCCCTATCATTTA
195 CAATAATAACTCTTAAACAGTTCAAAATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTA
27342 CTATGTTCTATATATTTATTCAATTCATTTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGC
260 CTATGTTCTATATATTTATTCAATTCATTTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGC
* *
27407 TTTTTAGCGGTTTTCGATTATAACTCTTAAACAGTTGAAAATAGAGTCAAAAGTTATAAGTATGA
325 TTTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAATAGAGTCAAAAGTTATAAGTATGA
*
27472 CCCCCTATCATTCATTAACTATGTTCTATATATTTGTTTAATCAAT
390 CCCCC-ATCATTCATTAACTATGTTCTATATATTTATTTAATCAAT
* * * *
27518 TTTTATATAAATTACTCCGTCGAGCGGTTTTGACGCTTTTTAACGGTTTTGACGATTATAACTCT
1 TTTTAAATAAATTGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTT--CAATTATAACTCT
* * *
27583 CATAACACAGTTCAAAATAGAGTTAAAACTTATAAGTATGACCCCCTATCATTGACTATGTTCTA
64 --TAA-ACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTA
27648 TATATTTATTTAA
126 TATATTTATTTAA
27661 AATTTAAACC
Statistics
Matches: 547, Mismatches: 18, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
429 3 0.01
430 304 0.56
431 75 0.14
433 1 0.00
434 3 0.01
435 74 0.14
436 3 0.01
437 12 0.02
439 3 0.01
440 69 0.13
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.40
Consensus pattern (434 bp):
TTTTAAATAAATTGCTCCGTCGAGCGGTTTTAACGCTTTTTAACGGTTTTCAATTATAACTCTTA
AACGGTTCAAAATAGAGTTAAAAATTATAAGTATGACCCCCTATCATTAACTATGTTCTATATAT
TTATTTAATTCATTTTTAAATAATCTGCTCCATCGAGCGGTTTTTAACGCTTTTTAGCGGTTTTC
AATAATAACTCTTAAACAGTTCAAAATAGAATTAAAAGTTATAAGTATGACCCCCTATCATTTAC
TATGTTCTATATATTTATTCAATTCATTTTTATATAATCTGCTCCGTCGAGCGGTTTTTAACGCT
TTTTAGCGGTTTTCAATTATAACTCTTAAACAGTTCAAAATAGAGTCAAAAGTTATAAGTATGAC
CCCCATCATTCATTAACTATGTTCTATATATTTATTTAATCAAT
Found at i:28846 original size:23 final size:24
Alignment explanation
Indices: 28820--28888 Score: 113
Period size: 24 Copynumber: 2.9 Consensus size: 24
28810 GAAAAAGTAG
28820 AAGTGTACTCATAGAAAAAA-AAA
1 AAGTGTACTCATAGAAAAAATAAA
28843 AAGTGTACTCATAGAAAAAATAAA
1 AAGTGTACTCATAGAAAAAATAAA
* *
28867 AAGTGTACTCATATAAACAATA
1 AAGTGTACTCATAGAAAAAATA
28889 TTTTTCTTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
23 20 0.47
24 23 0.53
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.22
Consensus pattern (24 bp):
AAGTGTACTCATAGAAAAAATAAA
Found at i:28861 original size:24 final size:23
Alignment explanation
Indices: 28820--28879 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
28810 GAAAAAGTAG
28820 AAGTGTACTCATAGAAAAAAAAA
1 AAGTGTACTCATAGAAAAAAAAA
28843 AAGTGTACTCATAGAAAAAATAAA
1 AAGTGTACTCATAGAAAAAA-AAA
28867 AAGTGTACTCATA
1 AAGTGTACTCATA
28880 TAAACAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.22
Consensus pattern (23 bp):
AAGTGTACTCATAGAAAAAAAAA
Found at i:36023 original size:12 final size:12
Alignment explanation
Indices: 36006--36039 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
35996 TGTGCAACGT
36006 TTTTTTTTTTTG
1 TTTTTTTTTTTG
36018 TTTTTTTTTTTG
1 TTTTTTTTTTTG
36030 TTTTTTTTTT
1 TTTTTTTTTT
36040 CTTTATGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:36058 original size:1 final size:1
Alignment explanation
Indices: 36005--36039 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
35995 TTGTGCAACG
* *
36005 TTTTTTTTTTTTGTTTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
36040 CTTTATGTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:39896 original size:174 final size:174
Alignment explanation
Indices: 39599--40947 Score: 2496
Period size: 174 Copynumber: 7.8 Consensus size: 174
39589 ACCATCTCAT
*
39599 ATATATATGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* * *
39664 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCGTCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
39729 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
39773 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* * *
39838 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCCAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
39903 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
39947 ATATAT-AGAAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTA
1 ATATATAAG-AAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTA
*
40011 TGTTAACGCA-TAGCGGTTATCTACAACAGATAGACGAACTGGGGCAAGACCATCTACACGGCAA
65 TGTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAA
40075 ATAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
130 ATAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
40120 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* *
40185 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40250 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
40294 ATATATAAG-AAAATTACCTGAATGTGTACTCATAGCA-TTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
40357 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40422 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
40466 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
40531 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40596 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
*
40640 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATGTTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
*
40705 GTTAACGCATTAGCGGTTATCTACAACGGATAGACGGACT-GGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40769 T-AACCTTCAATGCGAGGAGGTTGACGAGGCC-ACACAACACTCC
131 TAAACCTTCAATGCGAGGAGGTTGACGA-GCCAACACAACACTCC
40812 ATATATAAGAAAAATTACCTGAATGGTGTAACTCATAGCATTTTCAAACACCGACCTCTGATATT
1 ATATATAAGAAAAATTACCTGAAT-GTGT-ACTCATAGCATTTTCAAACACCGACCTCTGATATT
40877 ATGTTAACGCATTAGCGGTTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGC
64 ATGTTAACGCATTAGCGG-TTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGC
40942 AAATAA
128 AAATAA
40948 GTACGGGAGT
Statistics
Matches: 1148, Mismatches: 16, Indels: 19
0.97 0.01 0.02
Matches are distributed among these distances:
172 204 0.18
173 256 0.22
174 639 0.56
175 23 0.02
176 25 0.02
177 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (174 bp):
ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCC
Found at i:40578 original size:346 final size:348
Alignment explanation
Indices: 39599--40947 Score: 2496
Period size: 346 Copynumber: 3.9 Consensus size: 348
39589 ACCATCTCAT
*
39599 ATATATATGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
* * *
39664 GTTAACGCATTATCGGTTATCTACAACAGATAGACGGACTAGGGCAAGACCGTCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
39729 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCTG
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCTG
*
39794 AATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTATCGGTTATC
196 AATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTTATC
*
39859 TACAACAGATAGACGGACTAGGGCCAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAGG
261 TACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAGG
39924 TTGACGAGCCAACACAACACTCC
326 TTGACGAGCCAACACAACACTCC
39947 ATATAT-AGAAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTA
1 ATATATAAG-AAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTA
*
40011 TGTTAACGCA-TAGCGGTTATCTACAACAGATAGACGAACTGGGGCAAGACCATCTACACGGCAA
65 TGTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAA
40075 ATAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCT
130 ATAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCT
*
40140 GAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTATCGGTTAT
195 GAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTTAT
40205 CTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAG
260 CTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAG
40270 GTTGACGAGCCAACACAACACTCC
325 GTTGACGAGCCAACACAACACTCC
40294 ATATATAAG-AAAATTACCTGAATGTGTACTCATAGCA-TTTCAAACACCGACCTCTGATATTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
40357 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40422 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCTG
131 TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCTG
40487 AATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTTATC
196 AATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTTATC
*
40552 TACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAGG
261 TACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAGG
40617 TTGACGAGCCAACACAACACTCC
326 TTGACGAGCCAACACAACACTCC
*
40640 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATGTTAT
1 ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
*
40705 GTTAACGCATTAGCGGTTATCTACAACGGATAGACGGACT-GGGCAAGACCATCTACACGGCAAA
66 GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
40769 T-AACCTTCAATGCGAGGAGGTTGACGAGGCC-ACACAACACTCCATATATAAGAAAAATTACCT
131 TAAACCTTCAATGCGAGGAGGTTGACGA-GCCAACACAACACTCCATATATAAGAAAAATTACCT
40832 GAATGGTGTAACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTT
195 GAAT-GTGT-ACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGG-T
*
40897 TATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAATAA
257 TATCTACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAA
40948 GTACGGGAGT
Statistics
Matches: 981, Mismatches: 11, Indels: 17
0.97 0.01 0.02
Matches are distributed among these distances:
345 35 0.04
346 369 0.38
347 335 0.34
348 190 0.19
349 52 0.05
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (348 bp):
ATATATAAGAAAAATTACCTGAATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTAT
GTTAACGCATTAGCGGTTATCTACAACAGATAGACGGACTGGGGCAAGACCATCTACACGGCAAA
TAAACCTTCAATGCGAGGAGGTTGACGAGCCAACACAACACTCCATATATAAGAAAAATTACCTG
AATGTGTACTCATAGCATTTTCAAACACCGACCTCTGATATTATGTTAACGCATTAGCGGTTATC
TACAACAGATAGACGGACTAGGGCAAGACCATCTACACGGCAAATAAACCTTCAATGCGAGGAGG
TTGACGAGCCAACACAACACTCC
Found at i:43082 original size:453 final size:455
Alignment explanation
Indices: 40948--43290 Score: 4336
Period size: 454 Copynumber: 5.2 Consensus size: 455
40938 CGGCAAATAA
* *
40948 GTACGGGAGTCT-CCCGCAGCTTAAAAAATCCTCAGACCAAGCAACCACCGGT-CAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
41011 TATACACTCTCCATGAAGACTGACCAGTCCAACAGAGTCCTCCATATATATGAAAAATTA-CTGA
66 TATACACTCTCCATGAAGACTGACCAGT-CAACAGAGTCCTCCATATATATGAAAAATTACCTGA
*
41075 ATGTCTACTCATAGTATTTTTCAAAGGACGGGCCTCTCTCGTATCTCTTCAACGCGGAAGAGACG
130 ATGTCTACTCATAGTATTTTTCAAA-GACGGGCCTCTCTCGTATCTCTTC-ACGCGGTAGAGACG
*
41140 CATTTCCGCGTGGAAGCCTTATTACAAGCCTGGGACTCACCCTAATATCTATTTTGTTTACGTTC
193 CATTTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTC
41205 TTG-CCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTG
258 TTGCCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTG
41269 CATGCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
323 CATGCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
*
41334 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGTTTCGTT
388 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTT
41399 CCC
453 CCC
**
41402 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTGTGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
41467 TATACACTC-CCATGAAGACTGACCAGTCAACAGAGT-CTCCATATATATG-AAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
41529 TGTCTACTCATAGTATTTTTCAAAGAC-GGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
* *
41593 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACT-AACCTAATATCTATTTTGTTTACGTTCTTA
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
*
41657 CCCCTATATAGAACGCAAATACGCACGGTTTCTTCGGCATAAGTAGATAGACCGA-CTCTTTTGC
261 CCCCTATATAGAACGC-AATACGCACGTTTTCTTC-GCATAAGTAGATAGACCGACCTCTTTTGC
*
41721 ATGCATTGGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACAC
324 ATGCATT-GACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
41786 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCCTGAAAAGGTTCG
388 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCG-CCTG-AAAGGTTCG
41851 TTCCC
451 TTCCC
41856 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
41921 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
41986 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
*
42051 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
*
42116 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
42181 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
42246 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
* *
42311 GTACGGGAGTCTCCCTGCAGCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
42376 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
42441 TGTCTACTCATAGTA-TTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
42505 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
42570 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
* *
42635 GCATTGACCCGGGACAGCAACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
42700 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
*
42765 GTACGGGAGTCTCCCCGCAGC-TTAAATATCCT-AGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
42828 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
66 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
42893 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
131 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
42958 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
196 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
43023 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
261 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
*
43088 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATA
326 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
43153 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
391 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
43218 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTC-CCCA
1 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
43282 TATAACACT
66 TAT-ACACT
Statistics
Matches: 1840, Mismatches: 30, Indels: 37
0.96 0.02 0.02
Matches are distributed among these distances:
449 28 0.02
450 64 0.03
451 53 0.03
452 246 0.13
453 383 0.21
454 448 0.24
455 269 0.15
456 37 0.02
457 165 0.09
458 103 0.06
459 44 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (455 bp):
GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
Found at i:43089 original size:907 final size:908
Alignment explanation
Indices: 40948--43290 Score: 4332
Period size: 907 Copynumber: 2.6 Consensus size: 908
40938 CGGCAAATAA
*
40948 GTACGGGAGTCT-CCCGCAGCTTAAAAAATCCTCAGACCAAGCAACCACCGGT-CAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGCTT-AAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
41011 TATACACTCTCCATGAAGACTGACCAGTCCAACAGAGTCCTCCATATATATGAAAAATTA-CTGA
65 TATACACTCTCCATGAAGACTGACCAGT-CAACAGAGTCCTCCATATATATGAAAAATTACCTGA
*
41075 ATGTCTACTCATAGTATTTTTCAAAGGACGGGCCTCTCTCGTATCTCTTCAACGCGGAAGAGACG
129 ATGTCTACTCATAGTATTTTTCAAA-GACGGGCCTCTCTCGTATCTCTTC-ACGCGGTAGAGACG
*
41140 CATTTCCGCGTGGAAGCCTTATTACAAGCCTGGGACTCACCCTAATATCTATTTTGTTTACGTTC
192 CATTTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTC
41205 TTG-CCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTG
257 TTGCCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTG
41269 CATGCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
322 CATGCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
*
41334 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGTTTCGTT
387 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTT
**
41399 CCCGTACGGGAGTCTCCCCGCAGCATAAAATATCCTGTGACCAAGCAACCACCGGTCCAAGTCTC
452 CCCGTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTC
41464 CCATATACACTCCCATGAAGACTGACCAGTCAACAGAGTCTCCATATATATGAAAATTACCTGAA
517 CCATATACACTCCCATGAAGACTGACCAGTCAACAGAGTCTCCATATATATGAAAATTACCTGAA
41529 TGTCTACTCATAGTATTTTTCAAAGACGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATT
582 TGTCTACTCATAGTATTTTTCAAAGACGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATT
41594 TCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCTAATATCTATTTTGTTTACGTTCTTACC
647 TCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCTAATATCTATTTTGTTTACGTTCTTACC
41659 CCTATATAGAACGCAAATACGCACGGTTTCTTCGGCATAAGTAGATAGACCGACTCTTTTGCATG
712 CCTATATAGAACGCAAATACGCACGGTTTCTTCGGCATAAGTAGATAGACCGACTCTTTTGCATG
* *
41724 CATTGGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATA
777 CATTGGACCCGGGACAGCAACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
41789 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCCTGAAAAGGTTCGTTC
842 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCCTGAAAAGGTTCGTTC
41854 CC
907 CC
*
41856 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
1 GTACGGGAGTCTCCCCGCAGC-TTAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
41921 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
65 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
41986 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
130 TGTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
*
42051 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTAACCCTAATATCTATTTTGTTTACGTTCTTG
195 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
*
42116 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTCTGCAT
260 CCCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCAT
42181 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
325 GCATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATA
42246 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
390 GACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCC
* *
42311 GTACGGGAGTCTCCCTGCAGCTTAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
455 GTACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCA
42376 TATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAA
520 TATACACTC-CCATGAAGACTGACCAGTCAACAGAGT-CTCCATATATATG-AAAATTACCTGAA
42441 TGTCTACTCATAGTA-TTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
582 TGTCTACTCATAGTATTTTTCAAAGAC-GGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCAT
* *
42505 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTG
646 TTCCGCGTGGAAGCCTTATTACAAGCCTCGGACT-AACCTAATATCTATTTTGTTTACGTTCTTA
*
42570 CCCCTATATAGAACGC-AATACGCACGTTTTCTTC-GCATAAGTAGATAGACCGACCTCTTTTGC
710 CCCCTATATAGAACGCAAATACGCACGGTTTCTTCGGCATAAGTAGATAGACCGA-CTCTTTTGC
*
42633 ATGCATT-GACCCGGGACAGCAACACTGTTCCCGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
774 ATGCATTGGACCCGGGACAGCAACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACAC
42697 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCG-CCTG-AAAGGTTCG
839 ATAGACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCCTGAAAAGGTTCG
42760 TTCCC
904 TTCCC
42765 GTACGGGAGTCTCCCCGCAGCTTAAATATCCT-AGACCAAGCAACCACCGGTCCAAGTCTCCCAT
1 GTACGGGAGTCTCCCCGCAGCTTAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCAT
42829 ATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAAT
66 ATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAAT
42894 GTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATT
131 GTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATT
42959 TCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGC
196 TCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGC
43024 CCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATG
261 CCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATG
*
43089 CATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTATGTCCCCGGTCGGGGATACACATAG
326 CATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAG
43154 ACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCG
391 ACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCG
43219 TACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTC-CCCAT
456 TACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCAT
43283 ATAACACT
521 AT-ACACT
Statistics
Matches: 1400, Mismatches: 23, Indels: 25
0.97 0.02 0.02
Matches are distributed among these distances:
906 7 0.00
907 481 0.34
908 101 0.07
909 388 0.28
910 100 0.07
911 147 0.10
912 132 0.09
913 44 0.03
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (908 bp):
GTACGGGAGTCTCCCCGCAGCTTAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCAT
ATACACTCTCCATGAAGACTGACCAGTCAACAGAGTCCTCCATATATATGAAAAATTACCTGAAT
GTCTACTCATAGTATTTTTCAAAGACGGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATT
TCCGCGTGGAAGCCTTATTACAAGCCTCGGACTCACCCTAATATCTATTTTGTTTACGTTCTTGC
CCCTATATAGAACGCAATACGCACGTTTTCTTCGCATAAGTAGATAGACCGACCTCTTTTGCATG
CATTGACCCGGGACAGCCACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAG
ACCGGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCTGAAAGGTTCGTTCCCG
TACGGGAGTCTCCCCGCAGCATAAAATATCCTCAGACCAAGCAACCACCGGTCCAAGTCTCCCAT
ATACACTCCCATGAAGACTGACCAGTCAACAGAGTCTCCATATATATGAAAATTACCTGAATGTC
TACTCATAGTATTTTTCAAAGACGGCCTCTCTCGTATCTCTTCACGCGGTAGAGACGCATTTCCG
CGTGGAAGCCTTATTACAAGCCTCGGACTAACCTAATATCTATTTTGTTTACGTTCTTACCCCTA
TATAGAACGCAAATACGCACGGTTTCTTCGGCATAAGTAGATAGACCGACTCTTTTGCATGCATT
GGACCCGGGACAGCAACACTGTTCCAGGTGAAAATTAAGTCCCCGGTCGGGGATACACATAGACC
GGTCTCTCTTGCATGCTTTAACTCGGACAGCCACTCTGTTCCGCCCTGAAAAGGTTCGTTCCC
Done.