Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1477
Parameters: 2 7 7 80 10 50 1000
Length:  27218

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1163--2838
29
58.5
29
81
8
1676
29
30
16
23
1.97
2692--2852
28
5.5
31
82
6
112
29
30
18
22
1.97
3404--3475
19
3.6
20
74
7
65
33
12
11
43
1.78
9656--10043
210
1.9
209
89
1
607
30
15
16
37
1.90
11040--11075
17
2.1
18
94
5
65
11
38
5
44
1.63
13578--13623
22
2.0
22
87
4
65
43
6
0
50
1.28
14412--14455
23
1.9
23
90
0
70
45
0
2
52
1.13
15402--15456
6
9.2
6
79
16
53
25
1
1
70
1.06
15405--15438
17
1.9
18
94
5
61
23
2
2
70
1.15
15976--16014
20
1.9
21
89
5
62
35
7
0
56
1.28
19007--19057
16
3.3
15
83
8
66
56
5
5
31
1.47
18988--19057
16
4.5
15
76
7
59
51
7
7
34
1.57
22190--22219
3
10.0
3
100
0
60
0
33
0
66
0.92
22736--22812
19
4.1
19
98
1
147
57
0
0
42
0.99
22736--22805
5
14.8
5
82
11
94
57
0
0
42
0.99
22862--22904
17
2.5
17
80
3
50
46
0
2
51
1.13
22853--22906
16
3.4
16
72
23
51
48
1
1
48
1.23
23409--23470
26
2.4
25
80
20
67
58
0
3
38
1.15
23431--23527
37
2.6
36
77
9
106
54
0
5
40
1.23
23642--23715
22
3.2
21
78
14
58
45
2
1
50
1.24
23953--23984
2
16.5
2
93
6
57
50
0
0
50
1.00
24406--24469
32
2.0
32
90
0
101
37
23
12
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24926--24967
18
2.3
18
84
8
59
23
2
2
71
1.10
25440--25485
22
2.0
22
83
4
56
65
0
0
34
0.93
26462--26564
13
7.0
13
75
23
89
36
14
17
31
1.90
26487--26550
19
3.7
19
76
23
86
37
12
18
31
1.88
26474--26563
32
2.8
32
98
0
171
36
14
17
31
1.90

Tables:   1

The End!