genome.fa.s1483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1483
Parameters: 2 7 7 80 10 50 1000
Length:  87939

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512--559	19	2.4	20	89	6	71	56	0	8	35	1.30
922--961	20	2.0	20	90	9	64	62	0	0	37	0.95
1584--1655	2	36.5	2	85	13	78	52	1	4	41	1.29
1592--1670	39	2.0	39	95	4	142	54	2	7	35	1.42
3843--3898	26	2.2	26	87	3	78	64	0	0	35	0.94
3867--3897	16	1.9	16	93	0	53	70	0	0	29	0.87
3853--3927	26	3.0	25	76	20	68	61	0	0	38	0.96
3893--3935	16	2.7	16	86	10	61	58	0	0	41	0.98
18285--18355	27	2.6	27	86	6	90	46	22	7	23	1.76
20237--20282	21	2.1	22	84	4	58	19	30	19	30	1.97
24027--24079	22	2.4	24	75	18	60	41	0	0	58	0.98
24051--24083	14	2.2	16	89	10	52	36	0	0	63	0.95
24064--24119	25	2.4	24	82	11	71	33	0	1	64	1.04
24329--24516	49	4.0	46	76	17	149	37	1	1	59	1.14
24384--24516	38	3.6	35	77	14	135	39	0	0	59	1.08
24387--24515	8	15.0	9	72	17	89	37	0	0	60	1.08
24418--24499	36	2.4	33	83	6	101	37	1	1	59	1.13
24387--24513	24	5.4	24	77	15	140	37	0	0	60	1.08
24366--24525	50	3.1	51	74	16	154	40	0	1	57	1.11
24599--24633	18	1.9	18	88	0	52	20	2	20	57	1.54
24854--24916	28	2.2	28	97	0	117	49	0	1	49	1.10
26049--26082	13	2.6	13	85	0	50	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26049--26101	14	3.5	14	76	23	54	83	0	16	0	0.66
26123--26167	19	2.6	17	83	16	58	40	0	0	60	0.97
26172--26248	22	3.4	22	70	20	61	23	3	9	63	1.40
27801--27843	21	2.0	22	86	9	61	46	0	0	53	1.00
29978--30006	10	2.7	11	89	10	51	58	0	10	31	1.31
32122--32395	95	2.9	95	93	0	458	35	17	26	20	1.95
32122--32396	48	5.8	48	91	1	437	35	17	26	20	1.95
32648--33413	32	24.9	32	85	5	863	21	18	29	29	1.97
32506--33413	64	14.9	64	81	7	904	22	18	29	29	1.97
32607--33412	150	5.3	154	86	5	912	22	18	29	29	1.97
46266--46295	2	15.0	2	100	0	60	50	0	0	50	1.00
47771--47804	18	1.9	17	88	5	50	58	0	0	41	0.98
49034--49089	29	2.0	28	82	10	69	48	0	0	51	1.00
52804--52874	27	2.6	27	86	6	90	23	5	23	46	1.74
57371--57441	27	2.6	27	88	6	99	22	7	23	46	1.76
61073--61144	27	2.7	26	86	4	90	25	8	19	47	1.77
61229--61301	13	5.6	13	80	0	56	16	36	6	39	1.75
62668--63049	204	1.9	204	96	0	710	31	18	22	27	1.97
65864--65941	27	2.9	27	88	3	104	25	10	19	44	1.82
65870--65958	27	3.4	25	83	11	85	28	10	17	43	1.82
66996--67032	17	2.2	17	90	0	56	29	21	18	29	1.97
69684--69723	16	2.6	16	92	4	64	27	22	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70144--70266	14	9.3	14	69	23	70	38	0	1	60	1.07
70151--70255	15	6.2	18	65	26	68	37	0	0	61	1.02
70145--70226	33	2.6	32	83	11	89	40	0	1	58	1.06
70151--70266	20	6.3	18	69	20	71	37	0	1	61	1.07
70581--70635	23	2.3	24	79	17	62	45	1	5	47	1.36
75452--75551	27	3.7	27	90	0	137	24	8	22	46	1.78
76053--76117	23	3.1	23	66	25	70	26	0	16	56	1.40
76026--76117	40	2.3	40	96	0	166	25	1	18	55	1.49
76038--76101	17	3.4	17	69	22	56	23	0	23	53	1.47
76168--76208	21	2.0	20	85	4	55	26	2	4	65	1.25
77593--78088	153	3.2	153	78	6	409	28	15	15	40	1.88
86694--86768	20	3.7	20	77	7	78	37	10	14	37	1.81

Tables:   1

The End!