genome.fa.s1484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1484
Parameters: 2 7 7 80 10 50 1000
Length:  61885

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6285--6318	14	2.3	15	90	5	52	17	0	2	79	0.86
6946--6981	15	2.5	14	91	8	63	91	5	2	0	0.49
10796--10820	13	1.9	13	100	0	50	32	16	16	36	1.90
10775--10837	33	1.9	32	87	3	90	33	20	15	30	1.94
10920--10945	13	2.0	13	100	0	52	30	15	15	38	1.88
10900--10967	33	2.1	32	91	8	111	35	16	16	32	1.91
12937--13119	79	2.3	79	85	5	253	33	15	24	26	1.95
13054--13169	51	2.3	51	84	0	142	32	13	25	27	1.94
12975--13211	130	1.8	130	86	3	343	34	13	23	28	1.92
12975--13249	130	2.1	129	83	4	329	34	13	23	29	1.92
12952--13328	209	1.8	209	87	1	567	34	14	23	28	1.93
13105--13624	158	3.3	154	82	5	537	35	12	22	29	1.90
13189--13624	236	1.8	237	87	4	657	36	12	21	29	1.90
13105--13624	79	6.6	79	78	8	450	35	12	22	29	1.90
16597--16691	41	2.3	41	92	1	154	37	14	22	25	1.92
16700--17187	61	8.1	61	83	7	604	29	19	26	25	1.98
16940--17033	29	3.1	29	62	26	68	30	19	25	24	1.98
18151--18192	23	1.9	21	85	9	57	2	16	2	78	0.96
18177--18235	1	59.0	1	79	0	55	0	0	11	88	0.53
18178--18233	24	2.3	24	90	3	85	0	0	12	87	0.54
18178--18224	8	5.9	8	94	0	85	0	0	12	87	0.55
30406--30558	79	1.9	79	81	5	184	34	9	23	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30492--30610	51	2.3	51	84	2	150	31	14	26	27	1.95
30413--30689	130	2.1	130	82	5	319	34	11	23	30	1.91
30544--30922	79	4.8	79	82	3	356	34	12	24	29	1.92
30392--30768	209	1.8	209	83	3	508	34	12	22	30	1.92
30544--30922	158	2.4	158	83	6	448	34	12	24	29	1.92
36705--36729	13	1.9	13	100	0	50	32	16	20	32	1.94
37561--37589	9	3.3	9	90	9	51	79	10	0	10	0.94
37991--38308	134	2.4	136	85	4	423	32	18	18	29	1.95
41594--41647	27	2.0	28	88	3	83	25	22	1	50	1.59
41840--42859	522	2.0	522	95	0	1824	31	19	21	27	1.97
50128--50180	20	2.8	18	80	11	61	43	16	11	28	1.83
50169--50232	33	1.9	33	93	6	112	37	17	14	31	1.89
54875--55059	52	3.5	51	80	4	208	31	10	27	31	1.90
54875--55097	52	4.3	51	80	7	202	31	11	26	30	1.91
55081--55182	27	3.7	27	92	3	152	22	18	33	25	1.97
55171--55288	51	2.3	52	81	8	134	36	11	19	33	1.87

Tables:   1

The End!