genome.fa.s1485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1485
Parameters: 2 7 7 80 10 50 1000
Length:  106114

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973--1052	20	3.8	20	75	15	79	26	15	15	43	1.85
1038--1076	13	3.0	13	96	0	69	30	17	15	35	1.91
1197--1243	21	2.3	21	79	20	55	34	19	4	42	1.70
1199--1241	20	2.2	19	84	16	52	32	18	4	44	1.71
3610--3635	13	2.0	13	100	0	52	38	15	15	30	1.88
5853--5897	21	2.1	21	84	8	56	53	4	20	22	1.63
7701--7731	15	2.1	15	93	0	53	48	16	22	12	1.80
9745--9822	19	3.7	20	76	17	77	26	15	15	42	1.87
9809--9847	13	3.0	13	96	0	69	30	17	15	35	1.91
9968--10014	21	2.3	21	79	20	55	34	19	4	42	1.70
9970--10012	20	2.2	19	84	16	52	32	18	4	44	1.71
12389--12414	13	2.0	13	100	0	52	38	15	15	30	1.88
13595--13950	159	2.2	160	76	9	334	37	12	17	32	1.87
13189--15106	612	3.2	608	85	5	2687	37	13	16	32	1.88
14746--15242	159	3.1	158	68	10	382	36	13	17	32	1.89
19332--19392	9	7.1	9	72	10	56	44	1	40	13	1.53
19311--19420	42	2.6	41	87	5	157	41	0	43	13	1.50
19377--19426	18	2.8	18	81	6	57	44	0	46	10	1.37
22900--22963	12	5.9	11	77	15	55	37	1	45	15	1.56
22888--23006	42	2.9	41	86	6	159	44	1	40	13	1.54
28464--28539	12	6.9	11	75	15	52	39	2	48	9	1.49
28454--28572	42	2.8	41	88	5	159	43	3	44	8	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35581--35621	21	2.0	21	95	0	73	39	17	12	31	1.86
35194--38411	612	5.2	611	84	3	4010	37	13	17	32	1.88
39246--39274	15	1.9	15	100	0	58	79	6	6	6	1.06
44989--45049	9	7.1	9	72	10	56	11	42	1	44	1.50
44961--45079	42	2.8	42	88	0	175	9	45	1	43	1.46
44979--45070	24	4.2	23	73	18	79	10	44	1	43	1.46
50572--50603	9	3.6	9	91	0	55	43	0	43	12	1.42
50542--50673	42	3.1	42	86	2	167	45	1	43	9	1.44
58482--60020	612	2.5	603	85	4	2115	36	13	16	33	1.88
59575--60428	454	1.9	454	89	0	1334	37	12	16	33	1.87
60029--61551	626	2.5	616	86	3	2003	37	13	16	32	1.88
61167--64922	318	12.2	318	67	14	1933	36	14	17	31	1.89
61167--61640	159	3.0	158	68	11	401	37	15	16	30	1.90
61231--61771	159	3.4	157	68	16	414	36	14	16	31	1.89
61485--64975	611	5.7	612	90	1	5142	36	14	17	31	1.89
66578--66640	12	5.8	12	69	27	50	44	0	42	12	1.42
66579--66677	42	2.3	42	92	1	162	45	0	42	12	1.41
70299--70330	15	2.1	15	100	0	64	9	28	0	62	1.26
71886--71920	12	2.9	12	84	16	54	11	48	0	40	1.39
76917--78689	624	3.0	572	85	6	2165	38	12	16	32	1.87
77491--83151	624	9.0	611	73	13	3876	37	14	16	32	1.88
78677--78774	48	2.0	48	98	0	187	34	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80387--83150	602	4.5	609	82	7	3200	37	14	16	32	1.89
84875--84945	12	6.5	11	71	21	51	39	1	49	9	1.45
84871--84981	21	5.5	18	67	26	62	40	0	48	9	1.43
84870--84984	42	2.7	42	89	2	178	41	0	47	9	1.42
89603--89631	15	1.9	15	100	0	58	79	6	6	6	1.06
90392--90467	12	6.9	11	77	15	61	39	1	48	10	1.46
90412--90472	9	7.1	9	72	10	56	42	1	44	11	1.50
90382--90500	42	2.8	42	92	0	184	43	0	45	10	1.43
95476--98689	611	5.3	611	85	4	3945	36	13	16	32	1.89
98687--100437	610	2.9	608	85	4	2344	37	13	16	32	1.88
100866--100918	16	3.4	15	77	10	61	32	5	1	60	1.31
101172--101255	26	3.0	28	72	18	77	42	2	0	54	1.13
101566--101597	3	10.7	3	100	0	64	68	0	0	31	0.90
101684--101771	21	4.0	22	71	12	65	40	0	1	57	1.06
101742--101818	31	2.5	33	77	14	83	45	1	1	51	1.17
101997--102140	45	3.1	45	67	14	121	56	8	0	34	1.35

Tables:   1

The End!