Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold149
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 533615
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.25
Warning! 129246 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:5264 original size:28 final size:26
Alignment explanation
Indices: 5221--5295 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 26
5211 ATTTTTCATA
5221 ATCAGGGG-TACTCCAACCTCGTTATGT
1 ATCAGGGGATACTCCAACC-CGTTAT-T
5248 CATC-GGGGATACTCCAATCCCGTTATT
1 -ATCAGGGGATACTCCAA-CCCGTTATT
*
5275 TTCGAGGGGATACTCCAACCC
1 ATC-AGGGGATACTCCAACCC
5296 CGATTTTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
26 2 0.05
27 8 0.19
28 30 0.71
29 2 0.05
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (26 bp):
ATCAGGGGATACTCCAACCCGTTATT
Found at i:5340 original size:107 final size:106
Alignment explanation
Indices: 5082--5344 Score: 305
Period size: 107 Copynumber: 2.5 Consensus size: 106
5072 ACTATAACTT
* * * * * *
5082 CGATTTTATTTCCAAAACACCAATTTTTCACAATTGGAGATACTCAAACCTCGTTCTTTCATCGG
1 CGATTTTATTTCTAAAACATCAATTTTTCACAA-TCGAGATACTCCAACCTCGTTATGTCATCGG
*
5147 AGATACTCTAACCCCATTATTTCTGAGGGGATACTCCAACCC
65 AGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCC
* * * * * *
5189 CTG-CTTTATATCTAAAACATTAATTTTTCATAATCAGGGGTACTCCAACCTCGTTATGTCATCG
1 C-GATTTTATTTCTAAAACATCAATTTTTCACAATC-GAGATACTCCAACCTCGTTATGTCATCG
* * *
5253 GGGATACTCCAATCCCGTTATTT-TCGAGGGGATACTCCAACCC
64 GAGATACTCCAACCCCATTATTTCT-GAGGGGATACTCCAACCC
* *
5296 CGATTTTTTTTCTAAAATATCAATTTTTCACAATCGATGATACTCCAAC
1 CGATTTTATTTCTAAAACATCAATTTTTCACAATCGA-GATACTCCAAC
5345 TCTGATTTTA
Statistics
Matches: 127, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
106 4 0.03
107 122 0.96
108 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.34
Consensus pattern (106 bp):
CGATTTTATTTCTAAAACATCAATTTTTCACAATCGAGATACTCCAACCTCGTTATGTCATCGGA
GATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCC
Found at i:5417 original size:79 final size:79
Alignment explanation
Indices: 5334--5551 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
5324 CACAATCGAT
* * * *
5334 GATACTCCAACTCTGATTTTATTTTCAAAGCACCAATTTTCTATAATCAGGGATACTCCAACCCT
1 GATACTCCAACTCCGATTTTACTTTCAAAACACCGATTTTCTATAATCAGGGATACTCCAACCCT
5399 ATTATTTCCGAGGG
66 ATTATTTCCGAGGG
* * * * *
5413 GATACTCCAACCCCGATTTTAGTTTCAAAATACCGATTTTCTATAATTAGGGATATTCCAACCCT
1 GATACTCCAACTCCGATTTTACTTTCAAAACACCGATTTTCTATAATCAGGGATACTCCAACCCT
* **
5478 GTTATTTTTGAGGG
66 ATTATTTCCGAGGG
* * *
5492 GATACTCCAACTCCGATTTTACTTCCAAAACACTGATTTT-TCATAATCGGGGATACTCCA
1 GATACTCCAACTCCGATTTTACTTTCAAAACACCGATTTTCT-ATAATCAGGGATACTCCA
5552 TGTCGCAACG
Statistics
Matches: 119, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
78 1 0.01
79 118 0.99
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.34
Consensus pattern (79 bp):
GATACTCCAACTCCGATTTTACTTTCAAAACACCGATTTTCTATAATCAGGGATACTCCAACCCT
ATTATTTCCGAGGG
Found at i:9506 original size:52 final size:51
Alignment explanation
Indices: 9450--9834 Score: 256
Period size: 52 Copynumber: 7.4 Consensus size: 51
9440 AATTGTTCAT
* * **
9450 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCC-AC
* *
9502 AATC-GGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTCCAC
* ** * * ***** * * * * *
9553 ATTCAAGGATACTCCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACCTCC
1 AATCGGGGATACTCCAACCCCG--ATTTTATTTCCAAAACACCAA----TTTTCC-AC
* * ** * ***
9611 GA--GGGGATACTCCAACCCTGGCTTTATTTCCAAAATATTGA-TTTCTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTC-CAC
* * *
9660 AATCGGGGATAATCCAACCCCGTTTTTTATTTCCAAAACACTAATTTTCCAC
1 AATCGGGGATACTCCAACCCCG-ATTTTATTTCCAAAACACCAATTTTCCAC
* * * *
9712 AATCGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCC-AC
* * * *
9764 AATCGAGGATACTCCAACTCTGATTTTATTTCCAAAAACACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTCCAC
*
9816 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
9835 TCATTATTTC
Statistics
Matches: 250, Mismatches: 67, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
49 5 0.02
50 1 0.00
51 69 0.28
52 118 0.47
53 26 0.10
54 13 0.05
56 14 0.06
57 3 0.01
58 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCCAC
Found at i:9582 original size:25 final size:26
Alignment explanation
Indices: 9554--9605 Score: 61
Period size: 28 Copynumber: 2.0 Consensus size: 26
9544 ATTTTTCACA
*
9554 TTCA-AGGATACTCCAACCTCGTTAT
1 TTCACAGGATACTCCAACCCCGTTAT
*
9579 TTCATCGGGGATACTCCAACCCCGTTA
1 TTCA-C-AGGATACTCCAACCCCGTTA
9606 CCTCCGAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 4 0.18
28 18 0.82
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (26 bp):
TTCACAGGATACTCCAACCCCGTTAT
Found at i:9920 original size:263 final size:262
Alignment explanation
Indices: 9450--9946 Score: 832
Period size: 263 Copynumber: 1.9 Consensus size: 262
9440 AATTGTTCAT
*
9450 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTTAATCGGGATACTC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATCGGGATACTC
* *
9515 CAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACATTCAAGGATACTCCAACCTCGTTATT
66 CAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCATTATT
*
9580 TCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCTGGCTTTATTTCCAAA
131 TCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAA
* *
9645 ATATTGATTTCTCACAATCGGGGATAATCCAACCCCGTTTTTTATTTCCAAAACACTAATTTTCC
196 ATATTAATTTCTCACAATCAGGGATAATCCAACCCCGTTTTTTATTTCCAAAACACTAATTTTCC
9710 AC
261 AC
* * *
9712 AATCGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTCAATCGAGGATACT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATCG-GGATACT
* *
9777 CCAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCATTAT
65 CCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCATTAT
* *
9842 TTCGTCGGGGATACTCCAACCCCGTTACCTCTGAGGGGATACTCCAACCCCGGCTTTATTTCCAA
130 TTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAA
** * *
9907 AATATTAATTTCTCGTAATTAGGGATACTCCAACCCCGTT
195 AATATTAATTTCTCACAATCAGGGATAATCCAACCCCGTT
9947 ATTTCCGAGG
Statistics
Matches: 217, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
262 53 0.24
263 164 0.76
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (262 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATCGGGATACTC
CAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCATTATT
TCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAA
ATATTAATTTCTCACAATCAGGGATAATCCAACCCCGTTTTTTATTTCCAAAACACTAATTTTCC
AC
Found at i:9939 original size:79 final size:79
Alignment explanation
Indices: 9849--10081 Score: 272
Period size: 79 Copynumber: 2.9 Consensus size: 79
9839 TATTTCGTCG
** *
9849 GGGATACTCCAACCCCGTTACCTCTGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTA
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAATATTA
* **
9914 ATTTCTCGTAATTA
66 ATTTCTCATAACCA
* * * * *
9928 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTATTTCC-TAATCATC
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAAT-ATT
* * *
9992 GATTTTTCATAACCG
65 AATTTCTCATAACCA
* * *
10007 GGGATACTCCAACCCCGTTATTTTTAAGGGGATACTCCAACCCC-GTTCTTATCTCCAAAATATT
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGTT-TTATTTCCAAAATATT
10071 AAATTTCTCAT
65 -AATTTCTCAT
10082 CGGGACATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
78 5 0.04
79 110 0.87
80 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCCAAAATATTA
ATTTCTCATAACCA
Found at i:11306 original size:40 final size:39
Alignment explanation
Indices: 11258--11335 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
11248 GGTAAAAAGA
*
11258 CATAATGTATCAATACATTGAAGAATATATCGATACATT
1 CATAATGTATCAATACATTGAAAAATATATCGATACATT
* * * *
11297 CATACATGTATCGATATATTGAAAAATGTATTGATACAT
1 CATA-ATGTATCAATACATTGAAAAATATATCGATACAT
11336 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (39 bp):
CATAATGTATCAATACATTGAAAAATATATCGATACATT
Found at i:11308 original size:20 final size:20
Alignment explanation
Indices: 11261--11335 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
11251 AAAAAGACAT
* * *
11261 AATGTATCAATACATTGAAG
1 AATGTATCGATACATTCAAA
* *
11281 AATATATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
11301 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCAAA
*
11321 AATGTATTGATACAT
1 AATGTATCGATACAT
11336 CTGGGTAAAA
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:12019 original size:28 final size:28
Alignment explanation
Indices: 11911--12556 Score: 794
Period size: 28 Copynumber: 22.6 Consensus size: 28
11901 CACCAACTTG
**
11911 TGTGGGCTTTGAAAAGAGTTGCCACCAACT
1 TGTGGGCTTTGAAAAG-G-TGCCACTGACT
*
11941 CGTGTGGGCTTTAAAAAGAGTGCCACTGACT
1 --TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
11972 TGTGGGC-TTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
11999 TGTGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
12027 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* * *
12056 TGTGGGTTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
12084 TGTGGGCTTTG-AAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
12112 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
12141 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
12169 TGTGGGCTTTGAAAAGAGTGCCATTGATT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* * *
12198 TGTGGGTTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
12226 TGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
12254 TGTGGGCTTTCAAAAGAGTGCCACTAACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
12283 TGTGGGCTTTGAAAAGGTACCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * * *
12311 TGTGGGCTTTAAAAATAGTGCCACTAATT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
*
12340 TGTGGGCTTTGAAAACAGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* * *
12369 TATGGGCTTTGAAATGAGTGCCATTGACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
12398 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
12426 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
*
12454 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
*
12483 TGTGGGCTTTGAAAACAGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
* *
12512 TGTGGGCTTTGAAAGGGTGCTACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* *
12540 CGTGGACTTTGAAAAGG
1 TGTGGGCTTTGAAAAGG
12557 ATGAACATTC
Statistics
Matches: 540, Mismatches: 61, Indels: 30
0.86 0.10 0.05
Matches are distributed among these distances:
27 27 0.05
28 249 0.46
29 236 0.44
30 2 0.00
31 9 0.02
32 17 0.03
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:12067 original size:57 final size:57
Alignment explanation
Indices: 11911--12555 Score: 818
Period size: 57 Copynumber: 11.3 Consensus size: 57
11901 CACCAACTTG
** *
11911 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTAAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
11972 TGTGGGC-TTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
12027 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGTTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
12084 TGTGGGCTTTGAAAGGA-TGCTACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACT
* * * *
12141 TGTAGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACT
* * * *
12198 TGTGGGTTTTG-AAAGGGTGCCATTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTGACT
* * *
12254 TGTGGGCTTTCAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAGGTACCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * * * *
12311 TGTGGGCTTTAAAAATAGTGCCACTAATTTGTGGGCTTTGAAAACAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA-GGTGCCACTGACT
* * * *
12369 TATGGGCTTTGAAATGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* *
12426 TGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTGACT
* * *
12483 TGTGGGCTTTGAAAACAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* *
12540 CGTGGACTTTGAAAAG
1 TGTGGGCTTTGAAAAG
12556 GATGAACATT
Statistics
Matches: 510, Mismatches: 64, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
55 19 0.04
56 94 0.18
57 291 0.57
58 91 0.18
59 5 0.01
60 3 0.01
61 7 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (57 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:12110 original size:85 final size:85
Alignment explanation
Indices: 11911--12555 Score: 812
Period size: 85 Copynumber: 7.5 Consensus size: 85
11901 CACCAACTTG
* * *
11911 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTAAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTTG-AAAG-GATGCCACTAACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
11976 GGC-TTGAAAGGGTGCCACTGACT
62 GGCTTTGAAAGGGTGCCACTGACT
*
11999 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGT
1 TGTGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
*
12063 TTTGAAAGGGTGTCACTGACT
65 TTTGAAAGGGTGCCACTGACT
* *
12084 TGTGGGCTTTGAAAGGATGCTACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTAGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
12149 TTGAAAGGGTGCCACTGACT
66 TTGAAAGGGTGCCACTGACT
* * * * * * *
12169 TGTGGGCTTTGAAAAGAGTGCCATTGATTTGTGGGTTTTG-AAAGGGTGCCATTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
12233 TTTGAAAGGATGCCACTAACT
65 TTTGAAAGGGTGCCACTGACT
* * *
12254 TGTGGGCTTTCAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAAG-GTACCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* ** * *
12318 TTTAAAAATAGTGCCACTAATT
65 TTT-GAAAGGGTGCCACTGACT
** * * * *
12340 TGTGGGCTTTGAAAACAGTGCCACTGACTTATGGGCTTTGAAATGAGTGCCATTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
12405 TTTGAAAGGGTGCCACTGACT
65 TTTGAAAGGGTGCCACTGACT
* * *
12426 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
**
12491 TTGAAAACAGTGCCACTGACT
66 TTG-AAAGGGTGCCACTGACT
* * * * *
12512 TGTGGGCTTTGAAAGGGTGCTACTGACTCGTGGACTTTGAAAAG
1 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAG
12556 GATGAACATT
Statistics
Matches: 495, Mismatches: 55, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
84 39 0.08
85 252 0.51
86 167 0.34
87 21 0.04
88 16 0.03
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (85 bp):
TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
TTGAAAGGGTGCCACTGACT
Found at i:13810 original size:12 final size:12
Alignment explanation
Indices: 13769--13818 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
13759 CCCTTTTCTC
13769 TTTTTTTTGGCTAT
1 TTTTTTTTGG-T-T
*
13783 TTTTTCTTGG--
1 TTTTTTTTGGTT
13793 TTTTTTTTGGTT
1 TTTTTTTTGGTT
*
13805 TTTTTTTTTGTT
1 TTTTTTTTGGTT
13817 TT
1 TT
13819 AATTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 9 0.29
12 13 0.42
14 9 0.29
ACGTcount: A:0.02, C:0.04, G:0.14, T:0.80
Consensus pattern (12 bp):
TTTTTTTTGGTT
Found at i:19709 original size:17 final size:17
Alignment explanation
Indices: 19689--19724 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19679 ACAGAAGATG
* *
19689 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
19706 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
19723 AA
1 AA
19725 ATATGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:26159 original size:23 final size:23
Alignment explanation
Indices: 26130--26182 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
26120 CCTTTAAATG
*
26130 ACAAAAAAAGTCAAAAGCAAAAGC
1 ACAAAAAAA-TCAAAAGAAAAAGC
* *
26154 ACAAAAAAATGAAAAGAAAAAGT
1 ACAAAAAAATCAAAAGAAAAAGC
26177 ACAAAA
1 ACAAAA
26183 GCAAATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.72, C:0.11, G:0.11, T:0.06
Consensus pattern (23 bp):
ACAAAAAAATCAAAAGAAAAAGC
Found at i:26465 original size:9 final size:9
Alignment explanation
Indices: 26451--26475 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26441 AATCCTAAAA
26451 AAAAAAACC
1 AAAAAAACC
26460 AAAAAAACC
1 AAAAAAACC
26469 AAAAAAA
1 AAAAAAA
26476 AAAAACCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAACC
Found at i:27574 original size:27 final size:27
Alignment explanation
Indices: 27537--27864 Score: 478
Period size: 27 Copynumber: 12.0 Consensus size: 27
27527 GTGGCATTTT
* *
27537 CTTTTAAAGTCCACAACTCTGTGGCATC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
* **
27565 TTTTTAAGTCCACAACTCTATGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
27592 CTTTTAAAGTCCACAACTCCGTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
27620 CTTTTAAGACCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
27647 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
27674 CTTTTAAGTCCATAACTCCGTGGCA-T
1 CTTTTAAGTCCACAACTCCGTGGCACC
**
27700 CTCTTTAAGTCCACAACTTTGTGGCACC
1 CT-TTTAAGTCCACAACTCCGTGGCACC
*
27728 CTTTTAAAGTCCACAACTCCTTGGCACC
1 CTTTT-AAGTCCACAACTCCGTGGCACC
*
27756 CCTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
27783 CTTTTAAGTCCACAACTCCGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
*
27810 CTTTTAAGTCCACAACTCCGTGGCATC
1 CTTTTAAGTCCACAACTCCGTGGCACC
* *
27837 CTTTTAAATCCACAACTCTGTGGCACC
1 CTTTTAAGTCCACAACTCCGTGGCACC
27864 C
1 C
27865 ATTCCAAAGC
Statistics
Matches: 272, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.01
27 216 0.79
28 54 0.20
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (27 bp):
CTTTTAAGTCCACAACTCCGTGGCACC
Found at i:27787 original size:136 final size:136
Alignment explanation
Indices: 27537--27864 Score: 550
Period size: 136 Copynumber: 2.4 Consensus size: 136
27527 GTGGCATTTT
* * *
27537 CTTTTAAAGTCCACAACTCTGTGGCATCTTTTTAAGTCCACAACTCTATGGCACCCTTTTAAAGT
1 CTTTT-AAGTCCACAACTCCGTGGCATCTCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGT
*
27602 CCACAACTCCGTGGCACCCTTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
65 CCACAACTCCGTGGCACCCCTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
27667 TGGCACC
130 TGGCACC
* *
27674 CTTTTAAGTCCATAACTCCGTGGCATCTCTTTAAGTCCACAACTTTGTGGCACCCTTTTAAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCATCTCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGTC
* *
27739 CACAACTCCTTGGCACCCCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
66 CACAACTCCGTGGCACCCCTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
27804 GGCACC
131 GGCACC
*
27810 CTTTTAAGTCCACAACTCCGTGGCATC-CTTTTAAATCCACAACTCTGTGGCACCC
1 CTTTTAAGTCCACAACTCCGTGGCATCTC-TTTAAGTCCACAACTCTGTGGCACCC
27865 ATTCCAAAGC
Statistics
Matches: 179, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
135 1 0.01
136 173 0.97
137 5 0.03
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (136 bp):
CTTTTAAGTCCACAACTCCGTGGCATCTCTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGTC
CACAACTCCGTGGCACCCCTTTAAGACCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
GGCACC
Found at i:27902 original size:32 final size:32
Alignment explanation
Indices: 27847--28256 Score: 651
Period size: 32 Copynumber: 12.8 Consensus size: 32
27837 CTTTTAAATC
* * *
27847 CACAACTCTGTGGC-ACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
27878 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
27910 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
27942 CACAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
27974 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
28006 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
28038 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
28070 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
28102 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
28134 CACAAGTCAGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
28166 CATAAGTCGGTGGCAACTCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
28198 CACAAGTCGGTGGCGACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** * * *
28230 TGCAAGTCAGTGGCGACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
28257 TCACCATTTT
Statistics
Matches: 356, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
31 12 0.03
32 344 0.97
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:29476 original size:17 final size:15
Alignment explanation
Indices: 29456--29506 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
29446 TTAGGTAAAA
29456 AAGAAAGAAAGAAGATG
1 AAGAAAGAAAGAA-A-G
29473 AAG-AAGAAAGAAAG
1 AAGAAAGAAAGAAAG
* *
29487 AA-AAAGAAAAAAAA
1 AAGAAAGAAAGAAAG
29501 AAGAAA
1 AAGAAA
29507 AAATATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 14 0.47
15 4 0.13
16 9 0.30
17 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (15 bp):
AAGAAAGAAAGAAAG
Found at i:29507 original size:17 final size:17
Alignment explanation
Indices: 29453--29508 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
29443 AAGTTAGGTA
* *
29453 AAAAAGAAAGAAAGAAG
1 AAAAAGAAAAAAAAAAG
** * *
29470 ATGAAGAAGAAAGAAAG
1 AAAAAGAAAAAAAAAAG
29487 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
29504 AAAAA
1 AAAAA
29509 ATATGAAATG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:34683 original size:11 final size:11
Alignment explanation
Indices: 34667--34691 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
34657 CGAGCAGTGG
34667 TACCACTTATA
1 TACCACTTATA
34678 TACCACTTATA
1 TACCACTTATA
34689 TAC
1 TAC
34692 TTTCATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (11 bp):
TACCACTTATA
Found at i:35580 original size:27 final size:27
Alignment explanation
Indices: 35543--35600 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
35533 CCATATTTTT
* *
35543 CTACTCAACCTCTATACCCGTCATATC
1 CTACTCAACCTCCATACCCATCATATC
* *
35570 CTACTTAACCTCCATACCCATTATATC
1 CTACTCAACCTCCATACCCATCATATC
35597 CTAC
1 CTAC
35601 CACGACCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.40, G:0.02, T:0.31
Consensus pattern (27 bp):
CTACTCAACCTCCATACCCATCATATC
Found at i:36833 original size:26 final size:27
Alignment explanation
Indices: 36803--36861 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
36793 CATTCACATA
**
36803 AAAAAACTACTTATTAATTTCACTTTT
1 AAAAAACTACCCATTAATTTCACTTTT
*
36830 AAAAAACTGCCCATTAATTTCACTTTT
1 AAAAAACTACCCATTAATTTCACTTTT
36857 AAAAA
1 AAAAA
36862 GATTGCTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (27 bp):
AAAAAACTACCCATTAATTTCACTTTT
Found at i:36969 original size:79 final size:79
Alignment explanation
Indices: 36823--36979 Score: 253
Period size: 79 Copynumber: 2.0 Consensus size: 79
36813 TTATTAATTT
* * *
36823 CACTTTTAAAAAACTGCCCATTAATTTCACTTTTAAAAAGATTGCTTATATTTTTTTACATATTA
1 CACTTTTAAAAAACTACCCATTAATTTCACTTTTAAAAAAATTACTTATATTTTTTTACATATTA
36888 ATCTAATAATCTTG
66 ATCTAATAATCTTG
* *
36902 CACTTTTAAAAGAACTACCTATTAATTTTACTTTTAAAAAAATTACTTATA-TTTTTTACATATT
1 CACTTTTAAAA-AACTACCCATTAATTTCACTTTTAAAAAAATTACTTATATTTTTTTACATATT
36966 AATCTAATAATCTT
65 AATCTAATAATCTT
36980 TGTCAAAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
79 38 0.53
80 34 0.47
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.45
Consensus pattern (79 bp):
CACTTTTAAAAAACTACCCATTAATTTCACTTTTAAAAAAATTACTTATATTTTTTTACATATTA
ATCTAATAATCTTG
Found at i:37613 original size:3 final size:3
Alignment explanation
Indices: 37605--37639 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
37595 AATTTAATTT
37605 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
37640 TATTATGCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:39079 original size:30 final size:30
Alignment explanation
Indices: 39018--39086 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
39008 CCACCTAAAC
*
39018 CTCCACGAGCAGCGGCACCAAGAGCGCCTG
1 CTCCACGAGCAGCGGCACCAAGAGAGCCTG
*
39048 CTTCACGAGCAGCGGCACCAAGAGTAG-CTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
39078 CTCCACGAG
1 CTCCACGAG
39087 TAACAGCAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.29, T:0.10
Consensus pattern (30 bp):
CTCCACGAGCAGCGGCACCAAGAGAGCCTG
Found at i:39147 original size:15 final size:15
Alignment explanation
Indices: 39129--39208 Score: 51
Period size: 15 Copynumber: 5.3 Consensus size: 15
39119 GCGCCTTTAA
39129 GAGCACCTGCTCCAT
1 GAGCACCTGCTCCAT
*
39144 GAGCA-CTGGCACCAAT
1 GAGCACCT-GCTCC-AT
* *
39160 -AGAACCAGCTCCAT
1 GAGCACCTGCTCCAT
* *
39174 GAGCA-GTGGCACCGA-
1 GAGCACCT-GCTCC-AT
39189 GAGCACCTGCTCCAT
1 GAGCACCTGCTCCAT
39204 GAGCA
1 GAGCA
39209 GCGGCACCGA
Statistics
Matches: 47, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
14 5 0.11
15 37 0.79
16 5 0.11
ACGTcount: A:0.28, C:0.34, G:0.25, T:0.14
Consensus pattern (15 bp):
GAGCACCTGCTCCAT
Found at i:39222 original size:30 final size:30
Alignment explanation
Indices: 39128--39223 Score: 131
Period size: 30 Copynumber: 3.2 Consensus size: 30
39118 AGCGCCTTTA
*
39128 AGAGCACCTGCTCCATGAGCA-CTGGCACCA
1 AGAGCACCTGCTCCATGAGCAGC-GGCACCG
* * * *
39158 ATAGAACCAGCTCCATGAGCAGTGGCACCG
1 AGAGCACCTGCTCCATGAGCAGCGGCACCG
39188 AGAGCACCTGCTCCATGAGCAGCGGCACCG
1 AGAGCACCTGCTCCATGAGCAGCGGCACCG
39218 AGAGCA
1 AGAGCA
39224 GCGGCACCGA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.28, C:0.33, G:0.27, T:0.11
Consensus pattern (30 bp):
AGAGCACCTGCTCCATGAGCAGCGGCACCG
Found at i:39224 original size:45 final size:45
Alignment explanation
Indices: 39174--39471 Score: 269
Period size: 45 Copynumber: 6.6 Consensus size: 45
39164 CCAGCTCCAT
* * *
39174 GAGCAGTGGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACCGA
*
39219 GAGCAGCGGCACCGAGAGCTCCTGCTCTGTGAGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACCGA
* * * ** * * * * * * *
39264 GAGCACCTGCTCC-ACGAGCAGCGGCACCGAGAGCACCTGCTCCGT
1 GAGCAGCGGCACCGA-GAGCTCCTGCTCCGTGAGCAGCGGCACCGA
* *
39309 GAGCAGCGGCACCGAGGGCTCCTGCTCCGTGAGCTGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACCGA
* *
39354 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCTGCACGGA
1 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACCGA
* * * ** * * * * *
39399 GAGCAGCTGCTCC-ACCAGCAGCGGCACCGAGAGCAGCTGCTCC-A
1 GAGCAGCGGCACCGA-GAGCTCCTGCTCCGTGAGCAGCGGCACCGA
*
39443 CCAGCAGCGGCACCGAGAGCTCCTGCTCC
1 -GAGCAGCGGCACCGAGAGCTCCTGCTCC
39472 ACCTGCAGCA
Statistics
Matches: 195, Mismatches: 53, Indels: 10
0.76 0.21 0.04
Matches are distributed among these distances:
44 3 0.02
45 190 0.97
46 2 0.01
ACGTcount: A:0.20, C:0.37, G:0.33, T:0.10
Consensus pattern (45 bp):
GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACCGA
Found at i:39255 original size:30 final size:30
Alignment explanation
Indices: 39219--39358 Score: 217
Period size: 30 Copynumber: 4.7 Consensus size: 30
39209 GCGGCACCGA
* *
39219 GAGCAGCGGCACCGAGAGCTCCTGCTCTGT
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
**
39249 GAGCAGCGGCACCGAGAGCACCTGCTCCAC
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
39279 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
* *
39309 GAGCAGCGGCACCGAGGGCTCCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
*
39339 GAGCTGCGGCACCGAGAGCA
1 GAGCAGCGGCACCGAGAGCA
39359 GCGGCACCGA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 99 1.00
ACGTcount: A:0.19, C:0.36, G:0.34, T:0.11
Consensus pattern (30 bp):
GAGCAGCGGCACCGAGAGCACCTGCTCCGT
Found at i:39312 original size:135 final size:135
Alignment explanation
Indices: 39128--39472 Score: 503
Period size: 135 Copynumber: 2.6 Consensus size: 135
39118 AGCGCCTTTA
* * * * * *
39128 AGAGCACCTGCTCCATGAGCA-CTGGCACCAATAGAACCAGCTCCATGAGCAGTGGCACCGAGAG
1 AGAGCACCTGCTCCACGAGCAGC-GGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAG
* *
39192 CACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCTGCTCTGTGAGCAGCG
65 CTCCTGCTCCATGAGCAGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCG
39257 GCACCG
130 GCACCG
* *
39263 AGAGCACCTGCTCCACGAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGGGC
1 AGAGCACCTGCTCCACGAGCAGCGGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGC
* * *
39328 TCCTGCTCCGTGAGCTGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCTG
66 TCCTGCTCCATGAGCAGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGG
*
39393 CACGG
131 CACCG
* * * **
39398 AGAGCAGCTGCTCCACCAGCAGCGGCACCGAGAGCAGCTGCTCCACCAGCAGCGGCACCGAGAGC
1 AGAGCACCTGCTCCACGAGCAGCGGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGC
39463 TCCTGCTCCA
66 TCCTGCTCCA
39473 CCTGCAGCAG
Statistics
Matches: 187, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
135 186 0.99
136 1 0.01
ACGTcount: A:0.22, C:0.36, G:0.31, T:0.11
Consensus pattern (135 bp):
AGAGCACCTGCTCCACGAGCAGCGGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGC
TCCTGCTCCATGAGCAGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGG
CACCG
Found at i:39358 original size:75 final size:75
Alignment explanation
Indices: 39279--39435 Score: 224
Period size: 75 Copynumber: 2.1 Consensus size: 75
39269 CCTGCTCCAC
* * *** *
39279 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGGGCTCCTGCTCCGTGAGCT
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
39344 GCGGCACCGA
66 GCGGCACCGA
* * * *
39354 GAGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCTGCACGGAGAGCAGCTGCTCCACCAGCA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
39419 GCGGCACCGA
66 GCGGCACCGA
39429 GAGCAGC
1 GAGCAGC
39436 TGCTCCACCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.20, C:0.36, G:0.35, T:0.10
Consensus pattern (75 bp):
GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
GCGGCACCGA
Found at i:39373 original size:30 final size:30
Alignment explanation
Indices: 39174--39462 Score: 183
Period size: 30 Copynumber: 9.6 Consensus size: 30
39164 CCAGCTCCAT
* * *
39174 GAGCAG-TGGCACCGAGAGCACCTGCTCC-A
1 GAGCAGCT-GCACCGAGAGCAGCGGCACCGA
*
39203 TGAGCAGCGGCACCGAGAGCAGCGGCACCGA
1 -GAGCAGCTGCACCGAGAGCAGCGGCACCGA
** * * *
39234 GAGCTCCTGCTCTGTGAGCAGCGGCACCGA
1 GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* *
39264 GAGCACCTGCTCC-ACGAGCAGCGGCACCGA
1 GAGCAGCTGCACCGA-GAGCAGCGGCACCGA
* * *
39294 GAGCACCTGCTCCGTGAGCAGCGGCACCGA
1 GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* ** * * *
39324 GGGCTCCTGCTCCGTGAGCTGCGGCACCGA
1 GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* ** * * *
39354 GAGCAGCGGCACCGAGAGCTCCTGCTCCGT
1 GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* * *
39384 GAGCAGCTGCACGGAGAGCAGCTGCTCC-A
1 GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* * * *
39413 CCAGCAGCGGCACCGAGAGCAGCTGCTCC-A
1 -GAGCAGCTGCACCGAGAGCAGCGGCACCGA
* *
39443 CCAGCAGCGGCACCGAGAGC
1 -GAGCAGCTGCACCGAGAGC
39463 TCCTGCTCCA
Statistics
Matches: 219, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
30 218 1.00
31 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.34, T:0.10
Consensus pattern (30 bp):
GAGCAGCTGCACCGAGAGCAGCGGCACCGA
Found at i:39439 original size:105 final size:105
Alignment explanation
Indices: 39167--39462 Score: 362
Period size: 105 Copynumber: 2.8 Consensus size: 105
39157 AATAGAACCA
* *
39167 GCTCCATGAGCAG-TGGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCGGCAC
1 GCTCCATGAGCAGCT-GCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCTGCTC
* * * * *
39231 CGAGAGCTCCTGCTCTGTGAGCAGCGGCACCGAGAGCACCT
65 CGAGAGCTGCGGCACCGAGAGCAGCGGCACCGAGAGCACCT
* * * * **
39272 GCTCCACGAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGGGCTCCTGCTCC
1 GCTCCATGAGCAGCTGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCTGCTCC
* *
39337 GTGAGCTGCGGCACCGAGAGCAGCGGCACCGAGAGCTCCT
66 GAGAGCTGCGGCACCGAGAGCAGCGGCACCGAGAGCACCT
* * * **
39377 GCTCCGTGAGCAGCTGCACGGAGAGCAGCTGCTCCACCAGCAGCGGCACCGAGAGCAGCTGCTCC
1 GCTCCATGAGCAGCTGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCTGCTCC
* *
39442 -ACCAGCAGCGGCACCGAGAGC
66 GA-GAGCTGCGGCACCGAGAGC
39463 TCCTGCTCCA
Statistics
Matches: 160, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
105 160 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.10
Consensus pattern (105 bp):
GCTCCATGAGCAGCTGCACCGAGAGCACCTGCTCCATGAGCAGCGGCACCGAGAGCAGCTGCTCC
GAGAGCTGCGGCACCGAGAGCAGCGGCACCGAGAGCACCT
Found at i:39469 original size:30 final size:30
Alignment explanation
Indices: 39355--39486 Score: 165
Period size: 30 Copynumber: 4.4 Consensus size: 30
39345 CGGCACCGAG
* ***
39355 AGCAGCGGCACCGAGAGCTCCTGCTCCGTG
1 AGCAGCGGCACCGAGAGCACCTGCTCCACC
* * *
39385 AGCAGCTGCACGGAGAGCAGCTGCTCCACC
1 AGCAGCGGCACCGAGAGCACCTGCTCCACC
*
39415 AGCAGCGGCACCGAGAGCAGCTGCTCCACC
1 AGCAGCGGCACCGAGAGCACCTGCTCCACC
*
39445 AGCAGCGGCACCGAGAGCTCCTGCTCCACC
1 AGCAGCGGCACCGAGAGCACCTGCTCCACC
* *
39475 TGCAGCAGCACC
1 AGCAGCGGCACC
39487 AAGACCAACA
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 89 1.00
ACGTcount: A:0.21, C:0.39, G:0.30, T:0.10
Consensus pattern (30 bp):
AGCAGCGGCACCGAGAGCACCTGCTCCACC
Found at i:39821 original size:2 final size:2
Alignment explanation
Indices: 39816--39844 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
39806 ATATATATAT
39816 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
39845 AGGGGCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:40156 original size:21 final size:20
Alignment explanation
Indices: 40109--40165 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
40099 TTTAATATAT
40109 AATAAA-TAATAAAAAATTC
1 AATAAATTAATAAAAAATTC
*
40128 AATGAATTAATAAAAAA-TC
1 AATAAATTAATAAAAAATTC
40147 AGATTAAATTAATAAAAAA
1 A-A-TAAATTAATAAAAAA
40166 ATTATTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.24
20 11 0.33
21 14 0.42
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.26
Consensus pattern (20 bp):
AATAAATTAATAAAAAATTC
Found at i:40766 original size:20 final size:20
Alignment explanation
Indices: 40738--40786 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 20
40728 ATTAATTGAT
*
40738 TTAAA-AAATAATTTTAATA
1 TTAAATAAATAATTTAAATA
40757 TTAAATAAAT-A-TTAAATA
1 TTAAATAAATAATTTAAATA
40775 -T-AATAAATAATT
1 TTAAATAAATAATT
40787 AATAAACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 7 0.27
17 2 0.08
18 7 0.27
19 6 0.23
20 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TTAAATAAATAATTTAAATA
Found at i:44620 original size:21 final size:20
Alignment explanation
Indices: 44594--44633 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
44584 AAAAAAATAA
44594 TTTTTTATCAATTAAATTAAT
1 TTTTTTATCAATT-AATTAAT
*
44615 TTTTTTATTAATTAATTAA
1 TTTTTTATCAATTAATTAA
44634 ATCTCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTTATCAATTAATTAAT
Found at i:46751 original size:20 final size:19
Alignment explanation
Indices: 46726--46799 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
46716 TTTACCCAGA
46726 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
46746 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
46766 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
46786 TATATCGATACATT
1 TGTATCGATACATT
46800 CAGGCATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:49157 original size:51 final size:51
Alignment explanation
Indices: 49092--49205 Score: 124
Period size: 51 Copynumber: 2.2 Consensus size: 51
49082 ATTTTTCATC
* * **
49092 TCGGGGAAACTCCAA-TCCCGGTTCAATTTCCAAAACA-TCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTCAATTTCCAAAACACT-AATTTTTCACAA
* **
49143 TCGGGGATACTCCAACTTCGATTTTATTTCCAAAACACTAATTTTTCACAA
1 TCGGGGATACTCCAACTCCGATTCAATTTCCAAAACACTAATTTTTCACAA
*
49194 TTGGGGATACTC
1 TCGGGGATACTC
49206 AAACCCCGTT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
51 51 0.96
52 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTCAATTTCCAAAACACTAATTTTTCACAA
Found at i:49258 original size:28 final size:28
Alignment explanation
Indices: 49196--49268 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
49186 TTTCACAATT
* * *
49196 GGGGATACTCAAACCCCGTTATTTCATC
1 GGGGATACTCCAACCCCATTATTTCATA
*
49224 GGAGATACTCCAACCCCATTATTTC-TGA
1 GGGGATACTCCAACCCCATTATTTCAT-A
49252 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
49269 TGCTTTATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTCATA
Found at i:49389 original size:107 final size:106
Alignment explanation
Indices: 49163--49423 Score: 290
Period size: 107 Copynumber: 2.4 Consensus size: 106
49153 TCCAACTTCG
* * * * *
49163 ATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGATACTCAAACCCCGTTATTTCATCGGAG
1 ATTTTATTTCTAAAACATTAATTTTTCACAATCGGGG-TACTCCAACCCCGTTATGTCATCGGAG
* **
49228 ATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCT
65 ATACTCCAACCCCATTATTTCTGAGAGGATACTCCAACCCAA
** * * *
49270 GCTTTATATCTAAAACATTAATTTTTCATAATCAGGGGTACTCCAACCCCGTTATGTCATCGGGG
1 ATTTTATTTCTAAAACATTAATTTTTCACAATC-GGGGTACTCCAACCCCGTTATGTCATCGGAG
* * * *
49335 CTATTCCAATCCCGTTATTT-TCGAGAGGATACTCCAACCCAA
65 ATACTCCAACCCCATTATTTCT-GAGAGGATACTCCAACCCAA
* * * *
49377 ATTTTTTTTCTAAAATATCAATTTTTCACAATCGAGGATACTCCAAC
1 ATTTTATTTCTAAAACATTAATTTTTCACAATCG-GGGTACTCCAAC
49424 TTTGATTTTA
Statistics
Matches: 126, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
106 2 0.02
107 120 0.95
108 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (106 bp):
ATTTTATTTCTAAAACATTAATTTTTCACAATCGGGGTACTCCAACCCCGTTATGTCATCGGAGA
TACTCCAACCCCATTATTTCTGAGAGGATACTCCAACCCAA
Found at i:49495 original size:79 final size:79
Alignment explanation
Indices: 49410--49630 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 79
49400 TTTCACAATC
** * *
49410 GAGGATACTCCAACTTTGATTTTATTTTCAAAGCACCAATTTTCTATAATCAGGGATACTCCAAC
1 GAGGATACTCCAACTCCGATTTTAGTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
49475 CCTATTATTTCCGA
66 CCTATTATTTCCGA
* * * * * *
49489 GGGGATACTCCAACGCCGATTTTAGTTTCAAAATACCGATTTTCTATAATTAGGGATATTCCAAC
1 GAGGATACTCCAACTCCGATTTTAGTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
* **
49554 CCTGTTATTTTTGA
66 CCTATTATTTCCGA
* * *** *
49568 GAGGATACTCCAACTCCGATTTTACTTCCAAAACATTGATTTT-TCATAATCGGGGATACTCCA
1 GAGGATACTCCAACTCCGATTTTAGTTTCAAAACACCAATTTTCT-ATAATCAGGGATACTCCA
49631 TGTCGCAACG
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
78 1 0.01
79 117 0.99
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (79 bp):
GAGGATACTCCAACTCCGATTTTAGTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
CCTATTATTTCCGA
Found at i:52947 original size:19 final size:18
Alignment explanation
Indices: 52896--52985 Score: 75
Period size: 19 Copynumber: 5.1 Consensus size: 18
52886 TTGAATTCCA
52896 ATAA-TTTGTATCGATAC
1 ATAAGTTTGTATCGATAC
* *
52913 ATTCAGTAAATGTATCGATAC
1 A-TAAGT--TTGTATCGATAC
52934 ATAAGTGTTGTATCGATAC
1 ATAAGT-TTGTATCGATAC
52953 --AA---TGTATCGATAC
1 ATAAGTTTGTATCGATAC
52966 ATAAGTTTTGTATCGATAC
1 ATAAG-TTTGTATCGATAC
52985 A
1 A
52986 ATGTATCGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
13 11 0.19
15 2 0.03
17 3 0.05
18 2 0.03
19 24 0.41
20 4 0.07
21 12 0.21
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
ATAAGTTTGTATCGATAC
Found at i:52960 original size:13 final size:13
Alignment explanation
Indices: 52942--52966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52932 ACATAAGTGT
52942 TGTATCGATACAA
1 TGTATCGATACAA
52955 TGTATCGATACA
1 TGTATCGATACA
52967 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:52962 original size:32 final size:32
Alignment explanation
Indices: 52921--52993 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
52911 ACATTCAGTA
52921 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
52953 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
52985 AATGTATCG
1 AATGTATCG
52994 CTAGGAAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:53042 original size:20 final size:20
Alignment explanation
Indices: 53016--53090 Score: 114
Period size: 20 Copynumber: 3.7 Consensus size: 20
53006 TGCCAAAGAA
53016 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
53036 GTGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
53056 ATGTATCGATACATCTATTCT
1 ATGTATCGATACAT-TTTTCT
*
53077 TTGTATCGATACAT
1 ATGTATCGATACAT
53091 CTAGGAAGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
20 32 0.64
21 18 0.36
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:55493 original size:51 final size:51
Alignment explanation
Indices: 55419--55813 Score: 278
Period size: 51 Copynumber: 7.6 Consensus size: 51
55409 TTAAGTTTCT
*
55419 CAATTGTT-CATAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
1 CAATT-TTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * *
55470 AAATTTTCCTTTAATC-GGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACAC
* * ** * * ***** * *
55522 CAATTTTTCACAATCAAGGATACTCCAACCTCGTTATTTCATCGGGGATACTC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCG--ATTTTATTTCCAAAACAC
** * * ** * *
55575 CAA--CCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATAT
1 CAATTTTCC-ATA-AT-C--GGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
** * * *
55629 TGA-TTTCTCACAATCGGGGATAATCCAACCCCGTTTTTATTTCCAAAACAC
1 CAATTTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
** * *
55680 TGATTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
* * *
55731 CAATTTTCCTTCAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCCAT-AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACAC
* * *
55784 CAATTTTTCACAATCGAGGATACTCCAACC
1 CAATTTTCCATAATCGGGGATACTCCAACC
55814 TCGTTATTTT
Statistics
Matches: 259, Mismatches: 69, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
50 2 0.01
51 117 0.45
52 83 0.32
53 24 0.09
54 15 0.06
55 2 0.01
56 16 0.06
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (51 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAC
Found at i:55891 original size:262 final size:261
Alignment explanation
Indices: 55427--55925 Score: 872
Period size: 262 Copynumber: 1.9 Consensus size: 261
55417 CTCAATTGTT
*
55427 CATAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTTAATCGGGATA
1 CATAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATCGGGATA
55492 CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCGTT
66 CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCGTT
*
55557 ATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCC
131 ATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCC
*
55622 AAAATATTGATTTCTCACAATCGGGGATAATCCAACCCCGTTTTTATTTCCAAAACACTGATTTT
196 AAAATATTGATTTCTCACAATCAGGGATAATCCAACCCCGTTTTTATTTCCAAAACACTGATTTT
55687 C
261 C
* *
55688 CATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTCAATCAGGGAT
1 CATAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATC-GGGAT
*
55753 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGT
65 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCGT
** *
55818 TATTTTGTCGGAGATACTCCAATCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTC
130 TATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTC
** * *
55883 CAAAATATTGATTTCTCGTAATTAGGGATACTCCAACCCCGTT
195 CAAAATATTGATTTCTCACAATCAGGGATAATCCAACCCCGTT
55926 ATTTTCGAGG
Statistics
Matches: 224, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
261 56 0.25
262 168 0.75
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (261 bp):
CATAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCCTTCAATCGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCAAGGATACTCCAACCTCGTT
ATTTCATCGGAGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCC
AAAATATTGATTTCTCACAATCAGGGATAATCCAACCCCGTTTTTATTTCCAAAACACTGATTTT
C
Found at i:55961 original size:79 final size:78
Alignment explanation
Indices: 55830--56060 Score: 248
Period size: 79 Copynumber: 2.9 Consensus size: 78
55820 TTTTGTCGGA
* ** * *
55830 GATACTCCAATCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGAT
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GTTTTATTTCCAAAATATTGAT
* **
55895 TTCTCGTAATTAGG
65 TTCTCATAACCAGG
* * *
55909 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTATTTCC-TAATCATCGA
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG-TTTTATTTCCAAAAT-ATTGA
* *
55973 TTTTTCATAACCGGG
64 TTTCTCATAACCAGG
** * * *
55988 GATACTCCAACCCCGTTATTTTTAAGGGGATACTCCGACCCCGTTCTTATCTCCAAAATATTAAA
1 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTT-TTATTTCCAAAATATT-GA
56053 TTTCTCAT
64 TTTCTCAT
56061 CGGGACATAT
Statistics
Matches: 125, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 6 0.05
79 108 0.86
80 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (78 bp):
GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTTTTATTTCCAAAATATTGATT
TCTCATAACCAGG
Found at i:57304 original size:20 final size:20
Alignment explanation
Indices: 57240--57314 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
57230 AAAAAGACAT
*
57240 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAA
* * * *
57260 AATATATCAATACATTCATA
1 AATGTATCGATACATTGAAA
* *
57280 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTGAAA
*
57300 AATGTATTGATACAT
1 AATGTATCGATACAT
57315 CTGGGTAAAA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:58047 original size:57 final size:58
Alignment explanation
Indices: 57891--58563 Score: 877
Period size: 57 Copynumber: 11.8 Consensus size: 58
57881 CACCAACTTG
**
57891 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTGAAAAGAGTGCCACTGACT
* * *
57952 TGTGGGC-TTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAA-TGTGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
58007 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGTTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * *
58064 TGTGGGCTTTGAAAGGA-TGCTACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * *
58121 TGTAGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTACCACTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * *
58178 TGTGGGTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGATT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * *
58235 TGTGGGTTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
58291 TGTGGGCTTTCAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * * *
58348 TGTGGGCTTTAAAAATAGTGCCACTAATTTGTGGGCTTTGAAAACAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * *
58406 TAT-GGCTTTGAAATGAGTGCCATTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* *
58462 TGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAACAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
* * * *
58520 TATGGGCTTTG-AAAGGGTGCTACTGACTTGTGGACTTTGAAAAG
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG
58564 GATGAACATT
Statistics
Matches: 540, Mismatches: 62, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
55 18 0.03
56 77 0.14
57 383 0.71
58 47 0.09
59 5 0.01
60 3 0.01
61 7 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (58 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT
Found at i:58089 original size:85 final size:85
Alignment explanation
Indices: 57891--58561 Score: 800
Period size: 85 Copynumber: 7.8 Consensus size: 85
57881 CACCAACTTG
* **
57891 TGTGGGCTTTGAAAAGAGTTGCCACCAACTCGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
1 TGTGGGCTTTG-AAAG-GATGCCACTGACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTG
*
57956 GGC-TTGAAAGGGTGCCACTGACT
62 GGCTTTGAAAGAGTGCCACTGACT
* * *
57979 TGTGGGCTTTGAAAATG-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
*
58043 TTTGAAAGGGTGCCACTGACT
65 TTTGAAAGAGTGCCACTGACT
* * *
58064 TGTGGGCTTTGAAAGGATGCTACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTAGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
*
58129 TTGAAAGGGTGCCACTGACT
66 TTGAAAGAGTGCCACTGACT
* * * * *
58149 TGTGGGCTTTGAAAAGAGTACCACTGATTTGTGGGTTTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
* *
58213 TTTGAAAAGAGTGCCATTGATT
65 TTTG-AAAGAGTGCCACTGACT
* * * *
58235 TGTGGGTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
*
58299 TTCAAAAGAGTGCCACTGACT
66 TT-GAAAGAGTGCCACTGACT
* * * * *
58320 TGTGGGCTTTGAAAAGG-TACCACTGACTTGTGGGCTTTAAAAATAGTGCCACTAATTTGTGGGC
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
*
58384 TTTGAAAACAGTGCCACTGACT
65 TTTG-AAAGAGTGCCACTGACT
* * * *
58406 TAT-GGCTTTGAAATGAGTGCCATTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
*
58469 TTTGAAAAGAGTGCCACTGATT
65 TTTG-AAAGAGTGCCACTGACT
** * * * *
58491 TGTGGGCTTTGAAAACAGTGCCACTGACTTATGGGCTTTG-AAAGGGTGCTACTGACTTGTGGAC
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGC
58555 TTTGAAA
65 TTTGAAA
58562 AGGATGAACA
Statistics
Matches: 515, Mismatches: 56, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
84 43 0.08
85 278 0.54
86 178 0.35
87 1 0.00
88 15 0.03
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (85 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCT
TTGAAAGAGTGCCACTGACT
Found at i:59804 original size:24 final size:25
Alignment explanation
Indices: 59777--59833 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
59767 CCCTTTTATC
59777 TTTTTTTTGGCTATTTTT-TCTTGG
1 TTTTTTTTGGCTATTTTTGTCTTGG
* * * *
59801 TTTTTTTTGGTTTTTTTTGTTTTGT
1 TTTTTTTTGGCTATTTTTGTCTTGG
59826 TTTTTTTT
1 TTTTTTTT
59834 TGTAAAGGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.02, C:0.04, G:0.14, T:0.81
Consensus pattern (25 bp):
TTTTTTTTGGCTATTTTTGTCTTGG
Found at i:59816 original size:10 final size:10
Alignment explanation
Indices: 59790--59828 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
59780 TTTTTGGCTA
59790 TTTTTTCTTGG
1 TTTTTT-TTGG
59801 TTTTTTTTGG
1 TTTTTTTTGG
59811 TTTTTTTT-G
1 TTTTTTTTGG
59820 TTTTGTTTT
1 TTTT-TTTT
59829 TTTTTTGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 5 0.19
10 16 0.59
11 6 0.22
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (10 bp):
TTTTTTTTGG
Found at i:59833 original size:15 final size:14
Alignment explanation
Indices: 59801--59834 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
59791 TTTTTCTTGG
59801 TTTTTTTTGGTTTT
1 TTTTTTTTGGTTTT
59815 TTTTGTTTT-GTTTT
1 TTTT-TTTTGGTTTT
59829 TTTTTT
1 TTTTTT
59835 GTAAAGGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 13 0.68
15 4 0.21
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTTTTTTTGGTTTT
Found at i:67827 original size:18 final size:18
Alignment explanation
Indices: 67804--67845 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
67794 CTCATGAGCT
67804 TTTCTTTGCCAACTCTGA
1 TTTCTTTGCCAACTCTGA
67822 TTTCTTTGCCAACTCTGA
1 TTTCTTTGCCAACTCTGA
67840 TTTCTT
1 TTTCTT
67846 CACGCTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.14, C:0.26, G:0.10, T:0.50
Consensus pattern (18 bp):
TTTCTTTGCCAACTCTGA
Found at i:73878 original size:20 final size:19
Alignment explanation
Indices: 73849--73923 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
73839 AAAAAGACAT
73849 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
73868 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
73889 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
73909 AATGTATCGATACAT
1 AATGTATCGATACAT
73924 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:73906 original size:40 final size:39
Alignment explanation
Indices: 73846--73923 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
73836 GGTAAAAAGA
*
73846 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
73885 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
73924 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:80300 original size:60 final size:60
Alignment explanation
Indices: 80207--80354 Score: 217
Period size: 60 Copynumber: 2.5 Consensus size: 60
80197 ACCTCTTTTA
* * *
80207 ACCCTTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGC
1 ACCCTTTAGTCCTCAAAGAGCAGAACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTAGC
* *
80267 ACCCTTTAGTCCTCAAAGAGTAGAACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTATC
1 ACCCTTTAGTCCTCAAAGAGCAGAACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTAGC
* *
80327 A-CCTCCTAGTCCTCAAAGAGCAGGACGC
1 ACCCT-TTAGTCCTCAAAGAGCAGAACGC
80355 ACTTTATTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
59 3 0.04
60 76 0.96
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.22
Consensus pattern (60 bp):
ACCCTTTAGTCCTCAAAGAGCAGAACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTAGC
Found at i:80545 original size:61 final size:62
Alignment explanation
Indices: 80412--80997 Score: 572
Period size: 61 Copynumber: 9.8 Consensus size: 62
80402 ATTGCCTTCT
* * * **
80412 TTTCCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACC
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGA-TGC
* *
80474 TTT-TCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGATGC
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATGC
*
80534 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACAT-C
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGG--ATGC
* ** * * *
80595 TTTTTTCTTTTTGAAGCCCATACAAGTTGGTGCCA-TTTTCCAGTCCTCAAAGAGCAGGATGC
1 -TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATGC
* * * * *
80657 TTTCTCTTTTGAAAGCCCATACGAGTTGGTGGCACCTTT--AGTCCTTAAAGAGCAGGACGCC
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATG-C
* *
80718 TTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-C-TTCCTAGTCCTCAAAGAGCAGGA---
1 -TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCC-AGTCCTCAAAGAGCAGGATGC
* * *
80777 ---CACTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT--AGTCTTCAAAGAGCAGGATGTC
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATG-C
* *
80835 TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGA--C
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATGC
* ** **
80894 --GC-C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGGATG-
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCCAGTCCTCAAAGAGCAGGATGC
*
80952 ---C-CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAG
1 TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAG
80998 TGTAGGACGC
Statistics
Matches: 446, Mismatches: 48, Indels: 67
0.80 0.09 0.12
Matches are distributed among these distances:
54 17 0.04
55 66 0.15
56 5 0.01
57 45 0.10
58 3 0.01
59 1 0.00
60 41 0.09
61 124 0.28
62 110 0.25
63 34 0.08
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (62 bp):
TTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCAGTCCTCAAAGAGCAGGATGC
Found at i:80623 original size:62 final size:61
Alignment explanation
Indices: 80409--80949 Score: 523
Period size: 62 Copynumber: 9.0 Consensus size: 61
80399 TTTATTGCCT
* * *
80409 TCTTTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACA
1 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC-CTT-TAGTCCTCAAAGAGCAGGACA
* * * *
80472 -CCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGG--A
1 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACA
* * *
80531 TGCTTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
1 T-CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
* * * *
80593 TCTTTTTTCTTTTTGAAGCCCATACAAGTTGGTGCCA-TTTTCCAGTCCTCAAAGAGCAGG--A
1 TC-TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACA
* * * * * *
80654 TGCTTTCTCTTTTGAAAGCCCATACGAGTTGGTGGCACCTTTAGTCCTTAAAGAGCAGGACG
1 T-CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
*
80716 CCTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACA
1 TC-TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT--TAGTCCTCAAAGAGCAGGACA
* * **
80779 -C-TTTTC-----AAAGCCCACACGAGTTGGTGGCACCTTTAGTCTTCAAAGAGCAGGATG
1 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
80833 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC-
1 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACA
* * **
80894 GC-----C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGGA
1 TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA---CCTTTAGTCCTCAAAGAGCAGGA
80950 TGCCTTTTAA
Statistics
Matches: 408, Mismatches: 41, Indels: 64
0.80 0.08 0.12
Matches are distributed among these distances:
54 18 0.04
55 49 0.12
56 9 0.02
57 18 0.04
58 3 0.01
59 2 0.00
60 41 0.10
61 115 0.28
62 117 0.29
63 36 0.09
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (61 bp):
TCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACA
Found at i:80641 original size:123 final size:120
Alignment explanation
Indices: 80412--80997 Score: 672
Period size: 123 Copynumber: 4.9 Consensus size: 120
80402 ATTGCCTTCT
* * * *
80412 TTTCCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACA-CCT
1 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCAC-CTT-TAGTCCTCAAAGAGCAGGACATCTT
* *
80475 TTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGC
64 TTTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C
80534 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACATCTTTT
1 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACATC-TTT
* * *
80599 TTCTTTTTGAAGCCCATACAAGTTGGTGCCATTTTCCAGTCCTCAAAGAGCAGGATGC
65 TTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C
* * * **
80657 TTTCTCTTTTGAAAGCCCATACGAGTTGGTGGCACCTTTAGTCCTTAAAGAGCAGGACGCCTTTT
1 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACATC-TTT
*
80722 TTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGA-
65 TTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC-AGTCCTCAAAGAGCAGGAC
* * **
80777 ---CACTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCTTCAAAGAGCAGGATGTCTTTT
1 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACATCTTTT
*
80839 TCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGAC
66 TCTTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGAC
* * **
80894 --GC-C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGG--ATGC
1 TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCA---CCTTTAGTCCTCAAAGAGCAGGACAT-C
* *
80953 -----C-TTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAG
62 TTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAG
80998 TGTAGGACGC
Statistics
Matches: 419, Mismatches: 32, Indels: 36
0.86 0.07 0.07
Matches are distributed among these distances:
111 3 0.01
112 39 0.09
113 1 0.00
116 78 0.19
117 54 0.13
118 4 0.01
119 19 0.05
121 21 0.05
122 16 0.04
123 184 0.44
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (120 bp):
TTTCTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACATCTTTT
TCTTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC
Found at i:80955 original size:57 final size:55
Alignment explanation
Indices: 80730--81007 Score: 301
Period size: 55 Copynumber: 4.9 Consensus size: 55
80720 TTTTCTTTTT
* * *
80730 AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACACTTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACGCCTTTC
* * * *
80785 AAAGCCCACACGAGTTGGTGGCACCTTT-AGTCTTCAAAGAGCAGGATGTCTTTTTCTTTTT
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG-C-----C-TTTC
80846 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
** * * *
80901 AAAGCCCACACAAGTTGGTGGCATTTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 AAAGCCCACACAAGTTGGTGGCA--CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
* * *
80958 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGTGTAGGACGC
1 AAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACGC
81008 TCTCTCATTT
Statistics
Matches: 189, Mismatches: 22, Indels: 24
0.80 0.09 0.10
Matches are distributed among these distances:
54 19 0.10
55 67 0.35
56 4 0.02
57 50 0.26
61 31 0.16
62 18 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (55 bp):
AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTC
Found at i:81096 original size:100 final size:100
Alignment explanation
Indices: 80952--81202 Score: 309
Period size: 100 Copynumber: 2.6 Consensus size: 100
80942 GAGCAGGATG
* *
80952 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGTGTAGGACGCTCTCTCATT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCATT
*
81017 TCGCCCTTTAGTCCTTAAAGAGCAGGACGCCTTGT
66 TCACCCTTTAGTCCTTAAAGAGCAGGACGCCTTGT
** * *
81052 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGATGCTCTCTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCAT
*
81116 TTCACCCTTTAGTCCTTAAAGAGTAGGA---C--G-
65 TTCACCCTTTAGTCCTTAAAGAGCAGGACGCCTTGT
* * * * * *
81146 CCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCTAGTCCTTAATGAGCAGGACGC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGC
81203 CTTTTCCTTT
Statistics
Matches: 134, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
94 30 0.22
95 20 0.15
97 1 0.01
100 80 0.60
101 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (100 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCTCTCATT
TCACCCTTTAGTCCTTAAAGAGCAGGACGCCTTGT
Found at i:81211 original size:156 final size:154
Alignment explanation
Indices: 81025--81412 Score: 545
Period size: 156 Copynumber: 2.5 Consensus size: 154
81015 TTTCGCCCTT
*
81025 TAGTCCTTAAAGAGCAGGACGCCTTGTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGT
1 TAGTCCTT-AAGAGCAGGACGCCTTTTCC-TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGT
* *
81090 CCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTTAAAGAGTAGGACGCCTTTTAAA
64 CCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAA
* * **
81155 GCCCACACAGGTTGGTGGCATTTTTC
129 GCCCACACAAGTTGATGGCACCTTTC
* * *
81181 TAGTCCTTAATGAGCAGGACGCCTTTTCCTTTCAAAGCCCACATAAGTTGGTGGCACCTTCTGGT
1 TAGTCCTTAA-GAGCAGGACGCCTTTTCCTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAGT
*
81246 CCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAA
64 CCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAA
* *
81311 GCCTACATAAGTTGATGGCACCTTTC
129 GCCCACACAAGTTGATGGCACCTTTC
* * *
81337 -AGTCCTCACAGAGCAGGACGCC-TTT-C---AAAGCCCACACAAGTTGGTGGCACCTTTCAATC
1 TAGTCCTTA-AGAGCAGGACGCCTTTTCCTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
81396 CTCAAAGAGCAGGATGC
65 CTCAAAGAGCAGGATGC
81413 CTTTCAAAGC
Statistics
Matches: 209, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
149 44 0.21
153 1 0.00
154 3 0.01
155 24 0.11
156 137 0.66
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (154 bp):
TAGTCCTTAAGAGCAGGACGCCTTTTCCTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCC
TCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGTAGGACGCCTTTCAAAGC
CCACACAAGTTGATGGCACCTTTC
Found at i:81274 original size:61 final size:62
Alignment explanation
Indices: 81146--81275 Score: 156
Period size: 61 Copynumber: 2.1 Consensus size: 62
81136 GAGTAGGACG
* * ** * * *
81146 CCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTCTAGTCCTTAATGAGCAGGACGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAGAGCAGGACGCCTTCT
* *
81208 CCTTTCAAAGCCCACATAAGTTGGTGGCA-CCTTCTGGTCCTCAAAGAGCAGGACG-CTCTCT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAGAGCAGGACGCCT-TCT
81269 CCTTTCA
1 CCTTTCA
81276 CCCTTTAGTC
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
60 2 0.03
61 30 0.52
62 26 0.45
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (62 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATCCTTCTAGTCCTCAAAGAGCAGGACGCCTTCT
Found at i:81342 original size:55 final size:55
Alignment explanation
Indices: 81277--81521 Score: 341
Period size: 55 Copynumber: 4.5 Consensus size: 55
81267 CTCCTTTCAC
* * * *
81277 CCTTT-AGTCCTCAAAGAGTAGGACGCCTTTCAAAGCCTACATAAGTTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
81331 CCTTTCAGTCCTCACAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
81386 CCTTTCAATCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
** * * * *
81441 TTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCTACACAAGTTGGTGCCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
81496 -CTTCCAGTCCTCAAAGAGTAGGACGC
1 CCTTTCAGTCCTCAAAGAGCAGGACGC
81522 TCTCTCCTTT
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
54 27 0.16
55 143 0.84
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:81640 original size:62 final size:61
Alignment explanation
Indices: 81560--82031 Score: 443
Period size: 62 Copynumber: 7.9 Consensus size: 61
81550 GAGCAGGACA
* * *
81560 CCTTTTAAAACCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTGGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * *
81622 CCTTTTAAAGCCTACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAACAGG--A----TG
1 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * **
81677 CCTTTCAAAGCCCACACAAGTGGGTGGCA--TTCCAATCCTCAAAGAGCAGGA-TGCTTTCT
1 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTT-T
* * * * * ** **
81736 CCTTTTAAAGACCACTCGAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGTCTTCG
1 CCTTTTAAAGCCCACACAAGTGGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* ** * *
81798 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTAGACCTCAAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTGGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * *
81860 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAATCCTCAAAAAGCAGG--A-C-GTT
1 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* * ** *
81917 --TTTCAAAGCCCACACAAGCGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCTTTTT
1 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
* ** * * * * *
81976 CCTTTTAAAGACCATTCGAGTTGGTGGCACTTCCCAGTCTTCAAAGAGCAGGACAC
1 CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACAC
82032 TCTCTCCTTT
Statistics
Matches: 336, Mismatches: 58, Indels: 33
0.79 0.14 0.08
Matches are distributed among these distances:
53 19 0.06
55 74 0.22
57 2 0.01
58 2 0.01
59 27 0.08
61 81 0.24
62 128 0.38
63 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTGGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTT
Found at i:82179 original size:155 final size:155
Alignment explanation
Indices: 81897--82181 Score: 446
Period size: 155 Copynumber: 1.8 Consensus size: 155
81887 CATTTTCCAA
** *
81897 TCCTCAAAAAGCAGGACGTTTTTCAAAGCCCACACAAGCGGGTGGCATTTTCCAGTCCTCAAAGA
1 TCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGCGGGTGGCATTTTCCAATCCTCAAAGA
* * *
81962 GCAGGATGCTTTTTCCTTTTAAAGACCATTCGAGTTGGTGGCACTTCCCAGTCTTCAAAGAGCAG
66 GCAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
82027 GACACTCTCTCCTTTTGCCCTTTAG
131 GACACTCTCTCCTTTTGCCCTTTAG
* * * * *
82052 TCCTCAAAGAGCAGGGCGCCTTTCAAAGCCCATACAAGTGGGTGGCATTTTTCAATCCTCAAAGA
1 TCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGCGGGTGGCATTTTCCAATCCTCAAAGA
*
82117 GCAGGATGCTTTCTCCTTTTAAAGACTACTCGAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCA
66 GCAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCA
82181 G
130 G
82182 TGTAGACACC
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
155 114 0.97
156 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (155 bp):
TCCTCAAAAAGCAGGACGCCTTTCAAAGCCCACACAAGCGGGTGGCATTTTCCAATCCTCAAAGA
GCAGGATGCTTTCTCCTTTTAAAGACCACTCGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAG
GACACTCTCTCCTTTTGCCCTTTAG
Found at i:82318 original size:39 final size:39
Alignment explanation
Indices: 82264--82493 Score: 149
Period size: 39 Copynumber: 5.4 Consensus size: 39
82254 TATGTGGGGA
82264 TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
1 TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* * *
82303 TGAATCAGCATATTGGCACCT-TGTCTCTAAGATCGATGTCGCTGGCCT
1 TGAATCAGCACATTGGCA--TAAG-C-C-CA-AT--A--TCGCTGGCCT
* * *
82351 TGAATCAGCACATTGGCACAAGCCCAATATCGTTGG-TT
1 TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
* * * *
82389 GTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTAGCCT
1 -TGAATCAGCACATTGGCA---------TAAGCCCAATATCGCTGGCCT
* *
82438 TGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCT
1 TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
*
82477 TGAATCAGCATATTGGC
1 TGAATCAGCACATTGGC
82494 GCCTTTGTCA
Statistics
Matches: 147, Mismatches: 22, Indels: 44
0.69 0.10 0.21
Matches are distributed among these distances:
38 1 0.01
39 73 0.50
40 1 0.01
41 3 0.02
42 1 0.01
43 3 0.02
44 3 0.02
45 1 0.01
46 2 0.01
47 1 0.01
48 57 0.39
49 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCT
Found at i:82410 original size:87 final size:89
Alignment explanation
Indices: 82264--82747 Score: 494
Period size: 101 Copynumber: 5.2 Consensus size: 89
82254 TATGTGGGGA
*
82264 TGAATCAGCACATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTC-
1 TGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCA
* *
82328 TC-TAAGATCGATGTCGCTGGCCT
66 TCTTAAGACCAATGTCGCTGGCCT
* *
82351 TGAATCAGCACATTGGCACAAGCCCAATATCGTTGG-TTGTGAATCAGCATATTGGCACCTTGTC
1 TGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCT-TGAATCAGCATATTGGCACCTTGTC
*
82415 -T-TTAAGACCAATGTCGCTAGCCT
65 ATCTTAAGACCAATGTCGCTGGCCT
* *
82438 TGAATCAGCACATTGGCACAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTC
1 TGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTC
*
82503 ATCTTTAAGTCCAATGTCGCTGGCCT
65 ATC-TTAAGACCAATGTCGCTGGCCT
* *
82529 TGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
1 TGAATCAGCACATTGG------CA-C---AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGG
*
82594 CGCCTTCGTCATCTTTAAGACCAATGTCGCTGGCCT
56 CACCTT-GTCATC-TTAAGACCAATGTCGCTGGCCT
* * *
82630 TGAATCAGCACATTGGCATCTTCAACTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGG
1 TGAATCAGCACATTGG------C-AC---AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * *
82695 CATCTT-TAACATTCCTAAGCCCAATGTCGCTGGCCT
56 CACCTTGT--CA-TCTTAAGACCAATGTCGCTGGCCT
**
82731 TGTCTCAGCACATTGGC
1 TGAATCAGCACATTGGC
82748 GTTCTTCTTC
Statistics
Matches: 351, Mismatches: 24, Indels: 36
0.85 0.06 0.09
Matches are distributed among these distances:
86 1 0.00
87 131 0.37
88 6 0.02
89 1 0.00
91 35 0.10
95 1 0.00
97 2 0.01
98 1 0.00
99 1 0.00
100 2 0.01
101 167 0.48
102 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (89 bp):
TGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCA
TCTTAAGACCAATGTCGCTGGCCT
Found at i:82573 original size:49 final size:49
Alignment explanation
Indices: 82457--82747 Score: 321
Period size: 52 Copynumber: 5.8 Consensus size: 49
82447 ACATTGGCAC
* *
82457 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTT
* *
82509 AAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* *
82558 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTTT
* * * *
82610 AAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCAACTTT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
* * * * * *
82659 AAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC-TT--T
* * **
82711 AAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGC
82748 GTTCTTCTTC
Statistics
Matches: 206, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
49 91 0.44
50 4 0.02
51 1 0.00
52 110 0.53
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (49 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
Found at i:83573 original size:19 final size:19
Alignment explanation
Indices: 83549--83611 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 19
83539 AAACAGTAAA
83549 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
83568 TGTATCCATAC--AA----
1 TGTATCGATACATAAGTGT
* *
83581 TGTATTGACACATAAGTGT
1 TGTATCGATACATAAGTGT
83600 TGTATCGATACA
1 TGTATCGATACA
83612 ATGTATCGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
13 8 0.25
15 2 0.06
17 2 0.06
19 20 0.62
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:83594 original size:32 final size:32
Alignment explanation
Indices: 83547--83619 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
83537 ACAAACAGTA
*
83547 AATGTATCGATACATAAGTGTTGTATCCATAC
1 AATGTATCGACACATAAGTGTTGTATCCATAC
* *
83579 AATGTATTGACACATAAGTGTTGTATCGATAC
1 AATGTATCGACACATAAGTGTTGTATCCATAC
83611 AATGTATCG
1 AATGTATCG
83620 CTACAAAGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (32 bp):
AATGTATCGACACATAAGTGTTGTATCCATAC
Found at i:83686 original size:33 final size:33
Alignment explanation
Indices: 83643--83708 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
83633 GCCAAGGAAA
*
83643 TGTATCGATACATTATTCAATGTATCGATACAT
1 TGTATCGATACATTAATCAATGTATCGATACAT
* **
83676 TGTATTGATACATTAATCTTTGTATCGATACAT
1 TGTATCGATACATTAATCAATGTATCGATACAT
83709 CTGGGAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTAATCAATGTATCGATACAT
Found at i:86995 original size:45 final size:45
Alignment explanation
Indices: 86915--87081 Score: 164
Period size: 45 Copynumber: 3.8 Consensus size: 45
86905 ATGCCTTCTC
* * * * *
86915 CTTTTCTCCTTTGTCCTCAAAGAGTAGCACACACTTCA-TTCCCTT
1 CTTTTC-CCTTTGTCCTCAAAAAGCAGGACGCACTTCATTTTCCTT
*
86960 CTTTTCCCTTTTGTCCTCAAAAAGCAGGACGCACTTTATTTTCC-T
1 CTTTTCCC-TTTGTCCTCAAAAAGCAGGACGCACTTCATTTTCCTT
* * * *
87005 C-TTT-CTTTTGTCCTCAAAGAGCAGGATGCATTTCATTTTCCTT
1 CTTTTCCCTTTGTCCTCAAAAAGCAGGACGCACTTCATTTTCCTT
* * *
87048 -TTTTTCCTTTATCCTCAAAAAGCAGGACGTACTT
1 CTTTTCCCTTTGTCCTCAAAAAGCAGGACGCACTT
87082 TTTTTTCGCT
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 31 0.31
43 5 0.05
44 28 0.28
45 32 0.32
46 4 0.04
ACGTcount: A:0.21, C:0.28, G:0.11, T:0.40
Consensus pattern (45 bp):
CTTTTCCCTTTGTCCTCAAAAAGCAGGACGCACTTCATTTTCCTT
Found at i:87028 original size:42 final size:43
Alignment explanation
Indices: 86967--87088 Score: 149
Period size: 42 Copynumber: 2.8 Consensus size: 43
86957 CTTCTTTTCC
86967 CTTTTGTCCTCAAAAAGCAGGACGCACTTTATTTTCC-TCTTT
1 CTTTTGTCCTCAAAAAGCAGGACGCACTTTATTTTCCTTCTTT
* * *
87009 CTTTTGTCCTCAAAGAGCAGGATGCA-TTTCATTTTCCTTTTTTT
1 CTTTTGTCCTCAAAAAGCAGGACGCACTTT-ATTTTCC-TTCTTT
* * * *
87053 CCTTTATCCTCAAAAAGCAGGACGTACTTTTTTTTC
1 CTTTTGTCCTCAAAAAGCAGGACGCACTTTATTTTC
87089 GCTTTGTCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.04
42 31 0.46
44 30 0.45
45 3 0.04
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (43 bp):
CTTTTGTCCTCAAAAAGCAGGACGCACTTTATTTTCCTTCTTT
Found at i:87072 original size:44 final size:42
Alignment explanation
Indices: 86973--87088 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 42
86963 TTCCCTTTTG
* *
86973 TCCTCAAAAAGCAGGACGCACTTTATTTTCCTCTTTCTTTTG
1 TCCTCAAAAAGCAGGACGCACTTTATTTTCCTCTTTCCTTTA
* * *
87015 TCCTCAAAGAGCAGGATGCA-TTTCATTTTCCTTTTTTTCCTTTA
1 TCCTCAAAAAGCAGGACGCACTTT-ATTTTCC--TCTTTCCTTTA
* *
87059 TCCTCAAAAAGCAGGACGTACTTTTTTTTC
1 TCCTCAAAAAGCAGGACGCACTTTATTTTC
87089 GCTTTGTCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
41 3 0.05
42 25 0.41
44 30 0.49
45 3 0.05
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (42 bp):
TCCTCAAAAAGCAGGACGCACTTTATTTTCCTCTTTCCTTTA
Found at i:87088 original size:86 final size:87
Alignment explanation
Indices: 86924--87088 Score: 217
Period size: 86 Copynumber: 1.9 Consensus size: 87
86914 CCTTTTCTCC
* *
86924 TTTGTCCTCAAAGAGTAGCACACACTTCATTCCCTTCTTTTCCCTTTTGTCCTCAAAAAGCAGGA
1 TTTGTCCTCAAAGAGCAGCACACACTTCATTCCCTTCTTTTCCCTTTTATCCTCAAAAAGCAGGA
86989 CGCACTTTATTTTCCTCTTTCT
66 CGCACTTTATTTTCCTCTTTCT
* ** * * *
87011 TTTGTCCTCAAAGAGCAGGATGCATTTCATTTTCCTT-TTTTTCC-TTTATCCTCAAAAAGCAGG
1 TTTGTCCTCAAAGAGCAGCACACACTTCA-TTCCCTTCTTTTCCCTTTTATCCTCAAAAAGCAGG
* *
87074 ACGTACTTTTTTTTC
65 ACGCACTTTATTTTC
87089 GCTTTGTCTT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 31 0.46
87 30 0.45
88 6 0.09
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.41
Consensus pattern (87 bp):
TTTGTCCTCAAAGAGCAGCACACACTTCATTCCCTTCTTTTCCCTTTTATCCTCAAAAAGCAGGA
CGCACTTTATTTTCCTCTTTCT
Found at i:90210 original size:51 final size:51
Alignment explanation
Indices: 90153--90258 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
90143 TCTCGGGAAA
* **
90153 ACTCCAA-TCCCGGTTCCATTTCCAAAACA-TCAATTTTTCTTAATCGGGGAT
1 ACTCCAACT-CCGATTCCATTTCCAAAACACT-AATTTTTCACAATCGGGGAT
** *
90204 ACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGAT
1 ACTCCAACTCCGATTCCATTTCCAAAACACTAATTTTTCACAATCGGGGAT
90255 ACTC
1 ACTC
90259 AAACCTCGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 45 0.96
52 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.34
Consensus pattern (51 bp):
ACTCCAACTCCGATTCCATTTCCAAAACACTAATTTTTCACAATCGGGGAT
Found at i:90311 original size:28 final size:29
Alignment explanation
Indices: 90249--90320 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
90239 TTTCACAATT
* *
90249 GGGGATACT-CAAACCTCGTTATTTCATC
1 GGGGATACTCCAACCCTCGTTATTTCATA
*
90277 GGAGATACTCCAACCCT-GTTATTTC-TGA
1 GGGGATACTCCAACCCTCGTTATTTCAT-A
90305 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
90321 CGGCTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 1 0.03
28 31 0.82
29 6 0.16
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (29 bp):
GGGGATACTCCAACCCTCGTTATTTCATA
Found at i:90393 original size:28 final size:27
Alignment explanation
Indices: 90353--90429 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 27
90343 AATTTTCATA
* *
90353 ATCGGGGGTACTCTAACCCCGTTATGTT
1 ATCGGGGATACTCCAACCCCGTTAT-TT
*
90381 ATCGGGGATACTCCAATCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTATTT
* *
90408 TTGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
90430 ATTTTATTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 3 0.07
28 39 0.93
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTATTT
Found at i:90436 original size:107 final size:106
Alignment explanation
Indices: 90198--90472 Score: 340
Period size: 107 Copynumber: 2.6 Consensus size: 106
90188 TTTCTTAATC
* * * *
90198 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCACAATTGGGGATACTCAAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATA-TAATTTTTCACAATCGGGGATACTCAAAC
*
90263 CTCGTTATTTCATCGGAGATACTCCAACCCTGTTATTTCTGA
65 CCCGTTATTTCATCGGAGATACTCCAACCCTGTTATTTCTGA
** * * * * *
90305 GGGGATACTCCAACCCCGGCTTTATATCTGAAATATTGAA-TTTTCATAATCGGGGGTACTCTAA
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATA-T-AATTTTTCACAATCGGGGATACTCAAA
* *
90369 CCCCGTTATGTT-ATCGGGGATACTCCAATCCC-GTTATTTTTGA
64 CCCCGTTAT-TTCATCGGAGATACTCCAA-CCCTGTTATTTCTGA
*
90412 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCGGGGATACTC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATA-TAATTTTTCACAATCGGGGATACTC
90473 CAACTCCGAT
Statistics
Matches: 141, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
106 2 0.01
107 132 0.94
108 7 0.05
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (106 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAATATAATTTTTCACAATCGGGGATACTCAAACC
CCGTTATTTCATCGGAGATACTCCAACCCTGTTATTTCTGA
Found at i:90474 original size:51 final size:51
Alignment explanation
Indices: 90412--90529 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
90402 TTATTTTTGA
*
90412 GGGGATACTCCAACCCCGATTTTA-TTTCTAAAATACCAATTTT-TCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTCT-ACAATC
* *
90463 GGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTACAATC
**
90514 AAGGATACTCCAACCC
1 GGGGATACTCCAACCC
90530 TGTTATTTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
51 54 0.92
52 5 0.08
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTACAATC
Found at i:90694 original size:79 final size:80
Alignment explanation
Indices: 90463--90683 Score: 306
Period size: 79 Copynumber: 2.8 Consensus size: 80
90453 TTTCACAATC
* *
90463 GGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTTCTATAATCAAGGATACTCCAA
1 GGGGATACTCCAAC-CCTGATTTTACTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAA
90527 CCCTGTTA-TTTCGAA
65 CCCTGTTATTTTCGAA
* * * * * *
90542 AGAGATACTCCAACCCTGATTTTAGTTTCAAAATACCGATTTTCTATAATCAGGGATATTCCAAC
1 GGGGATACTCCAACCCTGATTTTACTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
90607 CCTGTTATTTTCG-A
66 CCTGTTATTTTCGAA
* *
90621 GGGGATACTCCAACCCTGATTTTACTTCCAAAACACCAATTTT-TCATAATCGGGGATACTCCA
1 GGGGATACTCCAACCCTGATTTTACTTTCAAAACACCAATTTTCT-ATAATCAGGGATACTCCA
90684 GTCCCGTTAT
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
78 3 0.02
79 116 0.94
80 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.33
Consensus pattern (80 bp):
GGGGATACTCCAACCCTGATTTTACTTTCAAAACACCAATTTTCTATAATCAGGGATACTCCAAC
CCTGTTATTTTCGAA
Found at i:93144 original size:28 final size:28
Alignment explanation
Indices: 93113--93194 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 28
93103 TCTTATAAGG
* *
93113 TAATTTCA-TATTTATTTTTTTATTTTTT
1 TAATTTCAGTA-TTATTTTTTTAATTTGT
*
93141 TAATTTTAGTATTATTTTTTTAATTTGT
1 TAATTTCAGTATTATTTTTTTAATTTGT
* *
93169 TAAAATTTTGATTATTATTTTTTTAA
1 T--AA-TTTCAGTATTATTTTTTTAA
93195 CAGTAAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
28 23 0.51
29 2 0.04
30 2 0.04
31 18 0.40
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (28 bp):
TAATTTCAGTATTATTTTTTTAATTTGT
Found at i:97506 original size:20 final size:20
Alignment explanation
Indices: 97481--97532 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
97471 TTTACCCAGA
*
97481 TGTATCAATACATTATTCAT
1 TGTATCGATACATTATTCAT
97501 TGTATCGATACATTATTCAT
1 TGTATCGATACATTATTCAT
97521 TGTATCGATACA
1 TGTATCGATACA
97533 ATGTATCGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTATTCAT
Found at i:97539 original size:13 final size:13
Alignment explanation
Indices: 97521--97545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97511 CATTATTCAT
97521 TGTATCGATACAA
1 TGTATCGATACAA
97534 TGTATCGATACA
1 TGTATCGATACA
97546 TTCTGGGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:100031 original size:79 final size:78
Alignment explanation
Indices: 99948--100121 Score: 217
Period size: 79 Copynumber: 2.2 Consensus size: 78
99938 CTCATAATCA
*** * *
99948 GGGATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGGCCTTATTTCTAAAGCT-TC
1 GGGATACTCCAACCCCGTTATTTTCAAGGGGACACTCAAACCCCGGCCTTATTTCTAAA-ATATC
100012 GATTTTTCA-CAATTG
65 GATTTTTCATC--TTG
* * * *
100027 GGGATACTCCAACCCCGTTATTTTCAAGGGGATACTTAAACCCCGGCTTTATTTCTAAAATATTG
1 GGGATACTCCAACCCCGTTATTTTCAAGGGGACACTCAAACCCCGGCCTTATTTCTAAAATATCG
*
100092 ATTTTTTATCTTG
66 ATTTTTCATCTTG
100105 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
100122 GTTTTATTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 21 0.25
79 61 0.73
80 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCCGTTATTTTCAAGGGGACACTCAAACCCCGGCCTTATTTCTAAAATATCG
ATTTTTCATCTTG
Found at i:100115 original size:129 final size:127
Alignment explanation
Indices: 99975--100247 Score: 329
Period size: 129 Copynumber: 2.1 Consensus size: 127
99965 TTATTTTGGC
* * * * *
99975 GGGGACACTCCAACCCCGGCCTTA-TTTCTAAAGCTTCGATTTTTCACAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGCCTTATTTTC-AAAACATCAATTTTTCACAATCGGGGATACTCCAA
* * * *
100039 CCCCGTTATTTTC-AAGGGGATACTTAAACC-CCGGCTTTATTTCTAAAATATTGATTTTTTATC
65 CCCCGTTATTTTCTAAGGGGATAC-T---CCTCCAGCTTTATTTCTAAAATATTAATTTCTCA-C
100102 -TT
125 ATT
** * *
100104 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAAT
1 GGGGATACTCCAACCCCGGCCTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAAC
*
100169 CCCGTTATTTTCTGAGGGGATACTCCTCCAGCTTTATTTCTAAAATATTAATTTCTCACAATT
66 CCCGTTATTTTCTAAGGGGATACTCCTCCAGCTTTATTTCTAAAATATTAATTTCTCAC-ATT
100232 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
100248 TGTTATTTTG
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
126 3 0.02
127 27 0.22
128 18 0.14
129 64 0.51
130 13 0.10
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (127 bp):
GGGGATACTCCAACCCCGGCCTTATTTTCAAAACATCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTATTTTCTAAGGGGATACTCCTCCAGCTTTATTTCTAAAATATTAATTTCTCACATT
Found at i:100146 original size:50 final size:51
Alignment explanation
Indices: 100054--100172 Score: 125
Period size: 50 Copynumber: 2.4 Consensus size: 51
100044 TTATTTTCAA
** * ** * * *
100054 GGGGATACTTAAACCCCGGCTTTATTTCTAAAATATTGATTTTTTAT-CTT
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATC
*
100104 GGGGATACTCCAACCCCGGTTTTATTT-TCAAAACATCAATTTTTCATAATC
1 GGGGATACTCCAACCCCGGCTTTATTTCT-AAAACATCAATTTTTCATAATC
*
100155 GGGGATACTCCAATCCCG
1 GGGGATACTCCAACCCCG
100173 TTATTTTCTG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
49 1 0.02
50 38 0.67
51 18 0.32
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCTTTATTTCTAAAACATCAATTTTTCATAATC
Found at i:100277 original size:206 final size:207
Alignment explanation
Indices: 99884--100291 Score: 509
Period size: 206 Copynumber: 2.0 Consensus size: 207
99874 AAATTTCTAT
* * **
99884 ATTTTTCATCTCGGGGATACTCCAATCCCGGTTTTATTTATAAAATATTGATTTCTCATAATCAG
1 ATTTTTCATCTCGGGGATACTCCAACCCCGGTTTTATTTATAAAACATCAATTTCTCATAATCAG
* * * *
99949 GGATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGGCCTTATTTCTAAAGCTTCGA
66 GGATACTCCAACCCCGTTATTTTGGAGGGGACACTCC-ACCCCAGCCTTATTTCTAAAGATTCAA
* * * *
100014 TTTTTCACAATTGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTTAAACCCCGGCTTTAT
130 TTTCTCACAATTGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCAAACCCCGACCTTAT
100079 TTCTAAAATATTG
195 TTCTAAAATATTG
* * * *
100092 ATTTTTTATCTTGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACATCAATTTTTCATAATCG
1 ATTTTTCATCTCGGGGATACTCCAACCCCGGTTTTATTTAT-AAAACATCAATTTCTCATAATCA
* * * * * *
100156 GGGATACTCCAATCCCGTTATTTTCTGAGGGGATACT-C-CTCCAGCTTTATTTCTAAA-ATATT
65 GGGATACTCCAACCCCGTTATTTT-GGAGGGGACACTCCACCCCAGCCTTATTTCTAAAGAT-TC
* *** *
100218 AATTTCTCACAATTGGGGATACTCCAACCCTGTTATTTTGGCGGGGATACTCCAACCCCGACCTT
128 AATTTCTCACAATTGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCAAACCCCGACCTT
100283 ATTTCTAAA
193 ATTTCTAAA
100292 GCTTCGATTT
Statistics
Matches: 170, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
205 1 0.01
206 81 0.48
207 1 0.01
208 78 0.46
209 9 0.05
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (207 bp):
ATTTTTCATCTCGGGGATACTCCAACCCCGGTTTTATTTATAAAACATCAATTTCTCATAATCAG
GGATACTCCAACCCCGTTATTTTGGAGGGGACACTCCACCCCAGCCTTATTTCTAAAGATTCAAT
TTCTCACAATTGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCAAACCCCGACCTTATT
TCTAAAATATTG
Found at i:100315 original size:79 final size:78
Alignment explanation
Indices: 100104--100480 Score: 293
Period size: 79 Copynumber: 4.8 Consensus size: 78
100094 TTTTTATCTT
** * * * *
100104 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATAATCGGGGATACTCCAAT
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAACTTCGATTTTCCACAATCGGGGATACTCCAA-
100169 CCCGTTATTTTCTGA
65 CCCGTTATTTTC-GA
* * * * *
100184 GGGGATACTCC--TCCAG-CTTTA-TTTCTAAAA-TAT-TAATTTCTCACAATTGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTTC-AAAACT-TCGATTTTC-CACAATCGGGGATACTCC
* *
100243 AACCCTGTTATTTTGGC
63 AACCC-GTTATTTTCGA
* * *
100260 GGGGATACTCCAACCCCGACCTTA-TTTCTAAAGCTTCGATTTTCCACAATCGGGGATACTCTAA
1 GGGGATACTCCAACCCCGACTTTATTTTC-AAAACTTCGATTTTCCACAATCGGGGATACTCCAA
*
100324 CTCCGTTATTTTCAA
65 C-CCGTTATTTTCGA
** * * * * * * *
100339 AAGGATACTCAAACCCCGATTTTATTTTCAAAAC-ACTGATTTTCTATAATCAGGGATGCTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAACTTC-GATTTTCCACAATCGGGGATACTCCAA
100403 CCCTGTTATTTTCGA
65 CCC-GTTATTTTCGA
* * * * * ** * *
100418 GGGGATACTCCAACCTCGATTTTAATTCCAGAACACCGATTTTTCATAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAACTTCGATTTTCCACAATCGGGGATACTCCA
100481 GCCCCATTGT
Statistics
Matches: 236, Mismatches: 47, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
76 23 0.10
77 35 0.15
78 9 0.04
79 145 0.61
80 24 0.10
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGACTTTATTTTCAAAACTTCGATTTTCCACAATCGGGGATACTCCAAC
CCGTTATTTTCGA
Found at i:100479 original size:285 final size:285
Alignment explanation
Indices: 99884--100415 Score: 639
Period size: 285 Copynumber: 1.9 Consensus size: 285
99874 AAATTTCTAT
* * * * *
99884 ATTTTTCATCTCGGGGATACTCCAATCCCGGTTTTATTTATAAAATATTGATTTCTCATAATCAG
1 ATTTTTCATATCGGGGATACTCC-ATCCCAGCTTTATTTATAAAATATTAATTTCTCACAATCAG
*
99949 GGATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGGCCTTATTTCTAAAGCTTCGA
65 GGATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGACCTTATTTCTAAAGCTTCGA
* * ** * *
100014 TTTTTCACAATTGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTTAAACCCCGGCTTTAT
130 TTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCAAAAGGATACTCAAACCCCGACTTTAT
* * * * ** *
100079 TTCTAAAATATTGATTTTTTATCTTGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAAT
195 TTCTAAAACACTGATTTTCTATATCAGGGATACTCCAACCCC-GTGTTATTTTCAAAACAT-AA-
* * * *
100144 TTTTCATAATCGGGGATACTCCAATCCCG
257 TCTCCATAATCGAGGATACTCCAAACCCG
* * **
100173 TTATTTTC-TGA--GGGGATACTCC-T-CCAGCTTTATTTCTAAAATATTAATTTCTCACAATTG
1 AT-TTTTCAT-ATCGGGGATACTCCATCCCAGCTTTATTTATAAAATATTAATTTCTCACAATCA
* *
100233 GGGATACTCCAACCCTGTTATTTTGGCGGGGATACTCCAACCCCGACCTTATTTCTAAAGCTTCG
64 GGGATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGACCTTATTTCTAAAGCTTCG
* * *
100298 ATTTTCCACAATCGGGGATACTCTAACTCCGTTATTTTCAAAAGGATACTCAAACCCCGATTTTA
129 ATTTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCAAAAGGATACTCAAACCCCGACTTTA
*
100363 TTT-TCAAAACACTGATTTTCTATAATCAGGGATGCTCCAA-CCC-TGTTATTTTC
194 TTTCT-AAAACACTGATTTTCTAT-ATCAGGGATACTCCAACCCCGTGTTATTTTC
100416 GAGGGGATAC
Statistics
Matches: 210, Mismatches: 29, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
283 9 0.04
284 1 0.00
285 169 0.80
286 13 0.06
288 11 0.05
289 2 0.01
290 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (285 bp):
ATTTTTCATATCGGGGATACTCCATCCCAGCTTTATTTATAAAATATTAATTTCTCACAATCAGG
GATACTCCAACCCCGTTATTTTGGCGGGGACACTCCAACCCCGACCTTATTTCTAAAGCTTCGAT
TTTCCACAATCGGGGATACTCCAACCCCGTTATTTTCAAAAGGATACTCAAACCCCGACTTTATT
TCTAAAACACTGATTTTCTATATCAGGGATACTCCAACCCCGTGTTATTTTCAAAACATAATCTC
CATAATCGAGGATACTCCAAACCCG
Found at i:114081 original size:61 final size:61
Alignment explanation
Indices: 113961--114149 Score: 263
Period size: 61 Copynumber: 3.1 Consensus size: 61
113951 GAGCAGGATG
* *
113961 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTCCTCAAAGAGCAGGATGCCTTCT
* * * * * *
114023 CCTTTTAAAGCACACACAAGTTAGTGACACCTTCCAGTCCTCAAAGAGTAGGATGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTCT
* *
114084 CCTCTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATG-CTCTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCT-TCT
114145 CCTTT
1 CCTTT
114150 CACCCTTTAG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
60 2 0.02
61 80 0.73
62 27 0.25
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTCT
Found at i:114229 original size:55 final size:55
Alignment explanation
Indices: 114158--114469 Score: 216
Period size: 55 Copynumber: 5.3 Consensus size: 55
114148 TTCACCCTTT
* * * *
114158 AGTCCTCAAAGTGCAGGACGCCTTTCAAAGCCCACCCTAA-TTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACAC-AAGTTGGTGGCACTTTCC
* *
114213 AGTCCTTAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
* * *
114268 AGTCCTCAAAGAGTAGGACACCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCACCTT-C
1 AGTCCTCAAAGAGCAGGACACC-TTT-C----AAAGCCCACACAAGTTGGTGGCACTTTCC
* * * * * * *
114328 AGTCCTTAAAGAGTAAGATGCCTTTTCCTTTTAAAACCCACACAAGTTGGTGGCACTTTTCT
1 AGTCCTCAAAGAG-CAG--GAC---ACCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCC
* * ** *
114390 AGTCCTCAAAAAGCAGGATACCTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACCTTT-T
1 AGTCCTCAAAGAGCAGGACA-C-----C-TTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCC
114452 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
114470 TGCCTTTTCT
Statistics
Matches: 203, Mismatches: 31, Indels: 39
0.74 0.11 0.14
Matches are distributed among these distances:
54 2 0.01
55 66 0.33
56 3 0.01
57 1 0.00
59 1 0.00
60 35 0.17
61 31 0.15
62 30 0.15
63 28 0.14
64 1 0.00
65 3 0.01
66 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
Found at i:114304 original size:210 final size:212
Alignment explanation
Indices: 113841--114340 Score: 616
Period size: 210 Copynumber: 2.4 Consensus size: 212
113831 TTTCATTTTT
* * * * ** *
113841 CAGTCCTAAAAGAGCAGGACGCTTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAA
1 CAGTCCTCAAAGAGTAGGACGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAG
* * * *
113906 TCCTCAAAGAGCAGGACGCTCTCCTTTCAACCTTTATTCCTGAAAGAGCAGGATGCCTTTTAAAG
65 TCCTCAAAGAGCAGGACGCTCTCCTTTCAACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAG
* * *
113971 CCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCAC
130 CCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGA-GAC--TACCTTTTAAAGCAC
114036 ACACAAGTTAGTGACACCTTC
192 ACACAAGTTAGTGACACCTTC
* * * *
114057 CAGTCCTCAAAGAGTAGGATGCCTTCTCCTCTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGT
1 CAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
* * *
114122 CCTCAAAGAGCAGGATGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGTGCAGGACGCCTTTCAAA
66 CCTCAAAGAGCAGGA--CGCTCTCCTTTCAACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAA
* * *
114187 GCCCACCCTAA-TTGGTGGCA-TTTTCCAGTCCTTAAAGAGC-AG-GAC-ACCTTTTAAAGCCCA
129 GCCCACAC-AAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGAGACTACCTTTTAAAGCACA
* * *
114247 CACAAGTTGGTGGCACTTTC
193 CACAAGTTAGTGACACCTTC
* * *
114267 CAGTCCTCAAAGAGTAGGACACCTTTTCCTTTTAAAGCCCACACAAGCTGGTGGCAC-CTTCAGT
1 CAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
*
114331 CCTTAAAGAG
66 CCTCAAAGAG
114341 TAAGATGCCT
Statistics
Matches: 246, Mismatches: 35, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
209 14 0.06
210 82 0.33
213 2 0.01
215 52 0.21
216 37 0.15
217 57 0.23
218 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (212 bp):
CAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT
CCTCAAAGAGCAGGACGCTCTCCTTTCAACCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
CCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGCAAGAGACTACCTTTTAAAGCACACAC
AAGTTAGTGACACCTTC
Found at i:114499 original size:61 final size:61
Alignment explanation
Indices: 114233--114524 Score: 338
Period size: 61 Copynumber: 4.8 Consensus size: 61
114223 GAGCAGGACA
* * *
114233 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGTAGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAGGATACCTTTT
* * * * * *
114294 CCTTTTAAAGCCCACACAAGCTGGTGGCACC-TTCAGTCCTTAAAGAGTAAGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTT
* * *
114354 CCTTTTAAAACCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAAAGCAGGATACCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-TAGTCCTCAAAGAGCAGGATACCTTTT
* ** *
114416 TCTTTTCAAAGCCCACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTT
* ** * *
114478 -CTTTTCAAAGTCCACATGAGTTAGTGGCACTTTTTAGTCCTCAAAGA
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGA
114525 ATAGGACACC
Statistics
Matches: 203, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
60 51 0.25
61 76 0.37
62 52 0.26
63 24 0.12
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACCTTTT
Found at i:114611 original size:42 final size:42
Alignment explanation
Indices: 114564--114890 Score: 222
Period size: 41 Copynumber: 7.7 Consensus size: 42
114554 CAGGACGCCT
* * *
114564 TTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCA
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* *
114606 TTTCCTTCTTTTCCCTTTTGTCCTCGAAGAGCAGGATTC-CCTTT--
1 TTTCCTT-TTTT-CC-TTTGTCCTCAAAGAGCAGGA--CGCATTTCA
* * * *
114650 TTT-CTTTTTTCCTTTATCCTCAAGGAGTAGGACGCACTTCA
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* *
114691 TTTCCTTCTTTTCCCTTCTAGTTCTCAAAGAGTAGGACGCACTTT-A
1 TTTCCTT-TTTT-CCTT-T-GTCCTCAAAGAGCAGGACGCA-TTTCA
* * * *
114737 TTCTCC-TTTTTCCTTTATCCTCAAAAAGCAGGACACATTTAA
1 TT-TCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* ** * * *
114779 TTTCCTATTTT-CTTTGTTTTCAAAGGGCAGGATGCATTTTA
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
* * * * *
114820 TTTCTTTTTTTCCTTAGTCCCCAAAGAACAGGACCCATTTCA
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
** *
114862 -TT-CTCTTTTTCCTTAATCCTCGAAGAGCA
1 TTTCCT-TTTTTCCTTTGTCCTCAAAGAGCA
114891 AGATGCTCCC
Statistics
Matches: 222, Mismatches: 44, Indels: 39
0.73 0.14 0.13
Matches are distributed among these distances:
38 1 0.00
39 3 0.01
40 17 0.08
41 64 0.29
42 58 0.26
43 12 0.05
44 13 0.06
45 22 0.10
46 26 0.12
47 6 0.03
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (42 bp):
TTTCCTTTTTTCCTTTGTCCTCAAAGAGCAGGACGCATTTCA
Found at i:114770 original size:88 final size:85
Alignment explanation
Indices: 114551--114784 Score: 276
Period size: 85 Copynumber: 2.7 Consensus size: 85
114541 TTGCCCTCTT
*
114551 GAGCAGGACGC-C--TTTTCCTTTTTTCCTTTGTCCTCAAAAAGTAGGACACATTTCATTTCCTT
1 GAGCAGGACGCACTTTTTTCC-TTTTTCCTTTATCCTCAAAAAGTAGGACACATTTCATTTCCTT
* *
114613 CTTTTCCCTTTTGTCCTCGAA
65 CTTTTCCCTTTAGTCCTCAAA
** * * ** * *
114634 GAGCAGGATTCCCTTTTTTCTTTTTTCCTTTATCCTCAAGGAGTAGGACGCACTTCATTTCCTTC
1 GAGCAGGACGCACTTTTTTCCTTTTTCCTTTATCCTCAAAAAGTAGGACACATTTCATTTCCTTC
*
114699 TTTTCCCTTCTAGTTCTCAAA
66 TTTTCCCTT-TAGTCCTCAAA
* * *
114720 GAGTAGGACGCACTTTATTCTCCTTTTTCCTTTATCCTCAAAAAGCAGGACACATTTAATTTCCT
1 GAGCAGGACGCACTTT-TT-TCCTTTTTCCTTTATCCTCAAAAAGTAGGACACATTTCATTTCCT
114785 ATTTTCTTTG
Statistics
Matches: 123, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
83 9 0.07
84 1 0.01
85 48 0.39
86 25 0.20
87 2 0.02
88 38 0.31
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (85 bp):
GAGCAGGACGCACTTTTTTCCTTTTTCCTTTATCCTCAAAAAGTAGGACACATTTCATTTCCTTC
TTTTCCCTTTAGTCCTCAAA
Found at i:115557 original size:20 final size:20
Alignment explanation
Indices: 115532--115590 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
115522 TACCCAAATG
115532 TATCGATACATTGTTCATTA
1 TATCGATACATTGTTCATTA
115552 TATCGATACATTGTTCATTA
1 TATCGATACATTGTTCATTA
*
115572 TATCGATACATTATTCATT
1 TATCGATACATTGTTCATT
115591 GTATTGTATC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (20 bp):
TATCGATACATTGTTCATTA
Found at i:120026 original size:27 final size:27
Alignment explanation
Indices: 119989--120046 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
119979 CCATATTTTT
* *
119989 CTACTCAACCTCTATACCCGTCATATC
1 CTACTCAACCTCCATACCCATCATATC
* *
120016 CTACTTAACCTCCATACCCATTATATC
1 CTACTCAACCTCCATACCCATCATATC
120043 CTAC
1 CTAC
120047 CACGACCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.40, G:0.02, T:0.31
Consensus pattern (27 bp):
CTACTCAACCTCCATACCCATCATATC
Found at i:120852 original size:13 final size:13
Alignment explanation
Indices: 120834--120859 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
120824 TACACAAAGT
120834 ATGTATCGATACA
1 ATGTATCGATACA
120847 ATGTATCGATACA
1 ATGTATCGATACA
120860 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:120878 original size:34 final size:32
Alignment explanation
Indices: 120816--120880 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
120806 TAGCCAAACT
**
120816 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAATGTATCGATACAA
120848 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACAC-AAAAAA-TGTATCGATACA
120881 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 4 0.14
34 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTATCGATACAA
Found at i:123114 original size:21 final size:21
Alignment explanation
Indices: 123081--123130 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
123071 TTGCAAGTTG
*
123081 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
123103 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
123124 AAATAAA
1 AAATAAA
123131 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:124948 original size:15 final size:15
Alignment explanation
Indices: 124928--124958 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
124918 TAAAAATGTC
*
124928 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
124943 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
124958 C
1 C
124959 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:127057 original size:13 final size:13
Alignment explanation
Indices: 127039--127076 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
127029 CATTTTTCTT
127039 TGTATCGATACAA
1 TGTATCGATACAA
* *
127052 TGTATCAATACAC
1 TGTATCGATACAA
127065 TGTATCGATACA
1 TGTATCGATACA
127077 GGGGGATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:128725 original size:23 final size:21
Alignment explanation
Indices: 128683--128725 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
128673 GTTTAATGTT
**
128683 TTTGCTTGACTTTGTGTTTTA
1 TTTGCTTGACTTTGAATTTTA
128704 TTTGCATTGTACTTTGAATTTT
1 TTTGC-TTG-ACTTTGAATTTT
128726 TAATCTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.60
Consensus pattern (21 bp):
TTTGCTTGACTTTGAATTTTA
Found at i:129655 original size:13 final size:13
Alignment explanation
Indices: 129637--129662 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
129627 TACACAAAGT
129637 ATGTATCGATACA
1 ATGTATCGATACA
129650 ATGTATCGATACA
1 ATGTATCGATACA
129663 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:129681 original size:34 final size:32
Alignment explanation
Indices: 129619--129683 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
129609 TAGCCAAACT
**
129619 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAATGTATCGATACAA
129651 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACAC-AAAAAA-TGTATCGATACA
129684 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 4 0.14
34 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTATCGATACAA
Found at i:131255 original size:27 final size:27
Alignment explanation
Indices: 131213--131270 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
131203 CATTCACATA
*
131213 AAAAAACTACCTATTAATTTCACTTTT
1 AAAAAACTACCCATTAATTTCACTTTT
*
131240 AAAAAACTGCCCATTAATTTCACTTTT
1 AAAAAACTACCCATTAATTTCACTTTT
131267 AAAA
1 AAAA
131271 GATTGCTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (27 bp):
AAAAAACTACCCATTAATTTCACTTTT
Found at i:131346 original size:79 final size:78
Alignment explanation
Indices: 131233--131388 Score: 242
Period size: 79 Copynumber: 2.0 Consensus size: 78
131223 CTATTAATTT
* * *
131233 CACTTTTAAAAAACTGCCCATTAATTTCACTTTT-AAAAGATTGCTTATATTTTTTTACATATTA
1 CACTTTTAAAAAACTACCCATTAATTTCACTTTTAAAAAAATTACTTATA-TTTTTTACATATTA
131297 ATCTAATAATCTTG
65 ATCTAATAATCTTG
* *
131311 CACTTTTAAAAGAACTACCTATTAATTTCATTTTTAAAAAAATTACTTATATTTTTTACATATTA
1 CACTTTTAAAA-AACTACCCATTAATTTCACTTTTAAAAAAATTACTTATATTTTTTACATATTA
131376 ATCTAATAATCTT
65 ATCTAATAATCTT
131389 TGTCAAAAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
78 11 0.15
79 47 0.66
80 13 0.18
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (78 bp):
CACTTTTAAAAAACTACCCATTAATTTCACTTTTAAAAAAATTACTTATATTTTTTACATATTAA
TCTAATAATCTTG
Found at i:133471 original size:30 final size:30
Alignment explanation
Indices: 133410--133731 Score: 119
Period size: 30 Copynumber: 10.6 Consensus size: 30
133400 CCACCTAAAC
*
133410 CTCCACGAGCAGCGGCACCAAGAGCGCCTG
1 CTCCACGAGCAGCGGCACCAAGAGAGCCTG
*
133440 CTTCACGAGCAGCGGCACCAAGAGTAG-CTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
* * * *
133470 CTCCACGAGTAGTAACAGCAGCGGC-A-ACA-CCTT
1 CTCCACGAGCAG---CGGCA-C--CAAGAGAGCCTG
* * * *
133503 TTCCAAGAGTAGC-GC-CTTAAGAGCA-CCTG
1 CTCCACGAGCAGCGGCAC-CAAGAG-AGCCTG
* * * *
133532 CTCCATAGAGCA-CTGGCACCAATAGAACCAG
1 CTCCA-CGAGCAGC-GGCACCAAGAGAGCCTG
* * *
133563 CTCCATGAGCAGTGGCACCGAGAGCA-CCTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
* * **
133593 CTCCATGAGCAGCGGCACCGAGAGCTCCTG
1 CTCCACGAGCAGCGGCACCAAGAGAGCCTG
*** *
133623 CTCTGTGAGCAGCGGCACCGAGAGCA-CCTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
** * *
133653 CTCCGTGAGCAGCGGCACCGAGGGCA-CCTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
** *
133683 CTCCGTGAGCAGCGGCACCGAGAGCA-CCTG
1 CTCCACGAGCAGCGGCACCAAGAG-AGCCTG
**
133713 CTCCGTGAGCAGCGGCACC
1 CTCCACGAGCAGCGGCACC
133732 GAGGGCTCCT
Statistics
Matches: 241, Mismatches: 31, Indels: 40
0.77 0.10 0.13
Matches are distributed among these distances:
27 2 0.01
28 1 0.00
29 11 0.05
30 189 0.78
31 16 0.07
32 1 0.00
33 17 0.07
34 2 0.01
35 1 0.00
36 1 0.00
ACGTcount: A:0.24, C:0.34, G:0.29, T:0.13
Consensus pattern (30 bp):
CTCCACGAGCAGCGGCACCAAGAGAGCCTG
Found at i:133732 original size:30 final size:30
Alignment explanation
Indices: 133522--133764 Score: 335
Period size: 30 Copynumber: 8.1 Consensus size: 30
133512 TAGCGCCTTA
* *
133522 AGAGCACCTGCTCCATAGAGCA-CTGGCACCA
1 AGAGCACCTGCTCCGT-GAGCAGC-GGCACCG
* * * * *
133553 ATAGAACCAGCTCCATGAGCAGTGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
*
133583 AGAGCACCTGCTCCATGAGCAGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
* *
133613 AGAGCTCCTGCTCTGTGAGCAGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
133643 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
*
133673 AGGGCACCTGCTCCGTGAGCAGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
133703 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
* * *
133733 AGGGCTCCTGCTCCGTGAGCTGCGGCACCG
1 AGAGCACCTGCTCCGTGAGCAGCGGCACCG
133763 AG
1 AG
133765 CGCAGCGGCA
Statistics
Matches: 192, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
30 179 0.93
31 13 0.07
ACGTcount: A:0.21, C:0.35, G:0.32, T:0.12
Consensus pattern (30 bp):
AGAGCACCTGCTCCGTGAGCAGCGGCACCG
Found at i:133783 original size:30 final size:30
Alignment explanation
Indices: 133569--133902 Score: 206
Period size: 30 Copynumber: 11.1 Consensus size: 30
133559 CCAGCTCCAT
* * * *
133569 GAGCAGTGGCACCGAGAGCACCTGCTCC-A
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
** * * * *
133598 TGAGCAGCGGCACCGAGAGCTCCTGCTCTGT
1 -GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* * * *
133629 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* * * * *
133659 GAGCAGCGGCACCGAGGGCACCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* * * *
133689 GAGCAGCGGCACCGAGAGCACCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* ** * * *
133719 GAGCAGCGGCACCGAGGGCTCCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* *
133749 GAGCTGCGGCACCGAGCGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
** * * * *
133779 GAGCTCCTGCTCCGTGAGCAGCGGCACGGA
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* * *
133809 GAGCAGCTGCTCC-ACCAGCAGCGGCACCGA
1 GAGCAGCGGCACCGA-GAGCAGCGGCACCGA
* * *
133839 GAGCAGCTGCTCCGTGAGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCAGCGGCACCGA
* * *
133869 GAGCAGCTGCTCC-ACCAGCAGCGGCACCGA
1 GAGCAGCGGCACCGA-GAGCAGCGGCACCGA
133899 GAGC
1 GAGC
133903 TCTGCTCCAC
Statistics
Matches: 268, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
30 268 1.00
ACGTcount: A:0.19, C:0.36, G:0.34, T:0.10
Consensus pattern (30 bp):
GAGCAGCGGCACCGAGAGCAGCGGCACCGA
Found at i:133785 original size:45 final size:45
Alignment explanation
Indices: 133629--133902 Score: 235
Period size: 45 Copynumber: 6.1 Consensus size: 45
133619 CCTGCTCTGT
133629 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
* * * * * * * * * * * * *
133674 GGGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCGT
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
* * *
133719 GAGCAGCGGCACCGAGGGCTCCTGCTCCGTGAGCTGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
* * *
133764 GCGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACGGA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
* * * * * * * * * *
133809 GAGCAGCTGCTCC-ACCAGCAGCGGCACCGAGAGCAGCTGCTCCGT
1 GAGCAGCGGCACCGA-GAGCACCTGCTCCGTGAGCAGCGGCACCGA
* ***
133854 GAGCAGCGGCACCGAGAGCAGCTGCTCCACCAGCAGCGGCACCGA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
133899 GAGC
1 GAGC
133903 TCTGCTCCAC
Statistics
Matches: 170, Mismatches: 57, Indels: 4
0.74 0.25 0.02
Matches are distributed among these distances:
44 1 0.01
45 168 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.36, G:0.35, T:0.09
Consensus pattern (45 bp):
GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
Found at i:133790 original size:105 final size:105
Alignment explanation
Indices: 133659--133875 Score: 326
Period size: 105 Copynumber: 2.1 Consensus size: 105
133649 CCTGCTCCGT
* ***
133659 GAGCAGCGGCACCGAGGGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
* * *
133724 GCGGCACCGAGGGCTCCTGCTCCGTGAGCTGCGGCACCGA
66 GCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
* * * *
133764 GCGCAGCGGCACCGAGAGCTCCTGCTCCGTGAGCAGCGGCACGGAGAGCAGCTGCTCCACCAGCA
1 GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
*
133829 GCGGCACCGAGAGCAGCTGCTCCGTGAGCAGCGGCACCGA
66 GCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
133869 GAGCAGC
1 GAGCAGC
133876 TGCTCCACCA
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 99 1.00
ACGTcount: A:0.19, C:0.36, G:0.36, T:0.09
Consensus pattern (105 bp):
GAGCAGCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGAGAGCACCTGCTCCACCAGCA
GCGGCACCGAGAGCACCTGCTCCGTGAGCAGCGGCACCGA
Done.