genome.fa.s1491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1491
Parameters: 2 7 7 80 10 50 1000
Length:  62219

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2006--2031	13	2.0	13	100	0	52	38	15	15	30	1.88
1985--2051	33	2.0	33	88	0	98	43	16	14	25	1.86
2071--2138	19	3.9	18	76	23	83	38	14	11	35	1.83
2093--2117	13	1.9	13	100	0	50	32	16	16	36	1.90
2074--2136	32	2.0	32	96	0	117	36	15	12	34	1.86
2194--2250	21	2.7	21	97	0	105	36	19	10	33	1.86
2257--2292	18	2.0	18	100	0	72	11	5	0	83	0.80
6734--6775	14	3.0	14	89	0	66	33	33	7	26	1.83
7310--7445	57	2.4	57	83	1	175	30	24	17	27	1.97
7318--7463	28	5.1	28	76	3	121	30	25	18	25	1.98
7563--8026	52	9.0	51	78	5	310	23	20	16	38	1.92
7563--8026	104	4.5	104	76	4	400	23	20	16	38	1.92
7645--7927	154	1.8	154	81	1	352	25	19	15	39	1.91
11266--11687	79	5.3	79	82	2	391	37	10	23	27	1.88
11265--11687	159	2.7	159	79	5	437	37	10	23	27	1.88
14144--14195	20	2.5	21	90	3	79	26	17	13	42	1.86
15562--15669	51	2.1	52	85	1	146	41	13	14	29	1.85
15624--15704	32	2.5	32	92	4	128	40	14	14	29	1.86
16754--17295	157	3.5	154	77	5	482	40	20	13	25	1.88
16788--17389	313	1.9	313	79	7	659	41	20	12	25	1.87
17797--18274	165	2.9	162	80	7	500	44	14	9	31	1.76
20064--20478	155	2.7	154	79	4	446	48	9	9	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20789--20880	36	2.8	33	83	8	116	29	21	14	34	1.93
21272--21309	20	1.9	20	100	0	76	42	15	10	31	1.81
21513--21556	22	2.1	21	91	8	72	38	9	6	45	1.63
24636--24679	21	2.1	21	86	0	61	20	20	0	59	1.39
26249--26340	36	2.8	33	81	8	107	28	23	14	33	1.94
26771--26844	20	3.7	20	94	0	121	37	18	10	32	1.86
27018--27061	22	2.1	21	91	8	72	38	9	6	45	1.63
30778--30954	96	1.8	96	85	2	248	27	23	10	38	1.88
42231--42265	14	2.5	14	90	0	52	37	8	11	42	1.72
42564--42805	32	7.7	31	72	10	163	29	29	18	22	1.97
42574--42806	64	3.7	63	82	7	267	30	28	19	21	1.98
42574--42834	32	8.2	32	70	11	162	29	28	19	22	1.98
42574--42806	126	1.8	128	83	5	312	30	28	19	21	1.98
42832--42915	43	2.0	43	87	0	123	23	23	17	34	1.96
42926--43267	52	6.6	54	75	9	243	24	25	16	33	1.95
42920--43215	156	1.9	153	82	6	364	25	25	14	34	1.94
42920--43217	104	2.9	101	74	14	279	25	25	15	34	1.94
42920--43248	156	2.1	153	80	5	358	24	25	14	34	1.94
43130--43283	53	2.9	53	76	12	140	23	25	16	34	1.95
43821--43955	51	2.6	51	85	2	146	27	17	13	41	1.87
45040--45076	18	2.1	18	100	0	74	37	10	5	45	1.62
46161--46358	95	2.1	95	88	0	288	26	25	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46172--46394	95	2.3	94	82	4	268	25	23	13	37	1.92
49177--49202	13	2.0	13	100	0	52	30	15	15	38	1.88
49157--49220	32	2.0	33	90	3	103	28	14	15	42	1.86
51004--51053	21	2.4	21	100	0	100	36	20	8	36	1.82
53012--53037	13	2.0	13	100	0	52	30	15	15	38	1.88
52992--53055	32	2.0	33	90	3	103	28	14	15	42	1.86
55189--55253	26	2.5	26	94	0	112	35	16	13	33	1.89
55205--55246	13	3.2	13	74	12	50	35	19	11	33	1.88
59203--59344	52	2.8	52	75	6	137	38	14	23	23	1.91
59386--59485	52	1.9	52	91	0	164	37	15	23	25	1.93
59394--59538	52	2.7	52	80	6	155	34	17	22	25	1.96
59548--59623	31	2.4	31	86	4	98	21	21	28	28	1.98
59573--59702	31	4.2	31	81	3	136	19	15	32	33	1.93
59548--59702	62	2.5	63	75	6	145	20	17	30	32	1.95
61935--62060	20	5.8	20	70	18	90	30	15	13	41	1.85
61924--62090	71	2.4	71	96	0	316	28	17	13	41	1.87

Tables:   1

The End!