Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1492
Parameters: 2 7 7 80 10 50 1000
Length:  95660

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2501--2529
15
2.0
15
93
6
51
44
0
0
55
0.99
3380--3459
31
2.6
31
88
4
108
32
12
20
35
1.90
3440--3542
37
2.7
38
80
7
120
25
14
23
36
1.93
11699--11725
3
9.0
3
100
0
54
33
0
33
33
1.58
12710--12734
6
4.2
6
100
0
50
16
0
0
84
0.63
12820--12871
27
1.9
27
96
0
95
19
28
26
25
1.98
13448--13491
21
2.0
21
82
8
52
45
2
6
45
1.42
14146--14187
2
21.0
2
95
0
75
47
0
2
50
1.14
15522--15590
21
3.4
21
69
23
58
46
8
1
43
1.43
17508--17532
12
2.1
12
100
0
50
36
0
0
64
0.94
17534--17568
13
2.8
12
91
4
52
45
0
11
42
1.40
17527--17620
34
2.9
34
80
4
113
38
1
19
41
1.58
17594--17629
18
2.0
18
100
0
72
33
0
22
44
1.53
22076--22131
22
2.6
21
82
5
58
28
1
28
41
1.66
22098--22165
34
2.0
34
91
0
109
25
2
33
38
1.71
22099--22173
34
2.2
34
87
0
105
25
2
32
40
1.70
22932--22971
2
20.0
2
89
0
62
45
0
0
55
0.99
28179--28516
72
4.7
72
77
4
279
33
11
23
32
1.90
28192--28516
144
2.3
143
78
3
330
33
11
23
31
1.90
31370--31590
34
6.5
33
82
9
266
40
26
7
24
1.82
31372--31590
68
3.2
67
85
3
296
40
26
7
25
1.82
31370--31590
102
2.2
101
89
1
352
40
26
7
24
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35986--36208
34
6.6
33
80
10
245
42
25
7
25
1.80
35986--36208
68
3.3
68
83
2
272
42
25
7
25
1.80
35986--36208
102
2.2
100
87
4
320
42
25
7
25
1.80
38502--38817
144
2.2
144
79
6
354
34
13
19
32
1.91
38625--39661
205
5.1
205
86
2
1357
36
11
18
33
1.87
38630--39661
409
2.5
411
86
2
1421
36
11
18
33
1.87
39658--39747
45
2.0
45
95
0
162
48
6
11
33
1.65
40171--40528
143
2.5
143
78
7
332
39
9
18
32
1.83
41613--41658
15
3.1
15
87
0
65
41
0
0
58
0.98
41774--41821
25
2.0
24
84
12
62
56
0
0
43
0.99
41934--41974
19
2.2
19
86
8
57
56
0
0
43
0.99
45584--45629
24
1.9
24
86
0
65
43
28
8
19
1.80
45706--45742
19
1.9
19
89
10
58
40
32
10
16
1.83
51408--51599
72
2.7
72
83
1
224
41
10
17
30
1.84
55467--55503
2
18.5
2
91
0
56
45
0
2
51
1.15
55580--55626
25
1.9
25
91
4
78
51
8
0
40
1.33
56169--56214
16
2.8
17
75
21
53
43
0
0
56
0.99
56174--56244
27
2.7
24
77
14
70
45
1
0
53
1.09
56926--56966
20
2.2
20
86
8
59
65
0
0
34
0.93
60062--60096
2
17.5
2
100
0
70
51
0
0
48
1.00
60096--60126
2
15.5
2
100
0
62
51
0
48
0
1.00
60707--60764
16
3.7
16
80
17
68
41
1
0
56
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60724--60761
12
3.2
12
85
7
51
39
2
0
57
1.12
66591--66631
16
2.7
15
85
7
55
39
0
2
58
1.11
66760--66803
19
2.3
19
80
7
54
52
0
0
47
1.00
66767--66809
20
2.2
19
84
12
52
48
0
0
51
1.00
66830--66868
16
2.4
16
83
8
53
33
0
5
61
1.18
67572--67596
5
5.0
5
100
0
50
40
0
20
40
1.52
67947--67995
25
2.0
25
84
7
66
46
0
6
46
1.27
68046--68110
21
3.1
21
72
10
62
49
0
0
50
1.00
71055--71079
2
12.5
2
100
0
50
52
0
0
48
1.00
75283--75313
2
16.0
2
93
6
55
48
0
0
51
1.00
78197--78229
14
2.4
14
95
5
59
69
0
0
30
0.88
79103--79153
17
2.9
17
77
5
57
43
0
1
54
1.11
79220--79315
26
3.7
26
83
2
122
40
4
7
47
1.50
79212--79322
52
2.2
52
78
4
127
42
3
8
45
1.51
80073--80119
2
23.5
2
95
0
85
48
0
2
48
1.13
81342--81394
13
4.0
13
77
20
56
33
0
0
66
0.92
81333--81399
28
2.2
33
84
12
90
40
0
0
59
0.97
81341--81411
28
2.5
28
80
13
92
38
0
0
61
0.96
81341--81412
29
2.6
29
78
10
87
37
0
0
62
0.95
81638--81718
24
3.2
25
79
8
83
48
0
1
50
1.08

Tables:   1

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