genome.fa.s1497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1497
Parameters: 2 7 7 80 10 50 1000
Length:  67107

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5137--5171	12	2.9	12	95	0	61	45	0	25	28	1.54
11772--11815	13	3.5	12	82	17	54	6	11	0	81	0.86
11746--11872	31	4.0	31	71	18	93	7	14	0	77	1.03
11775--11860	24	3.3	26	77	15	81	6	16	1	75	1.07
15642--15754	60	1.9	59	80	7	131	25	15	11	46	1.80
16103--16128	13	2.0	13	100	0	52	30	15	15	38	1.88
16083--16149	33	2.0	33	85	0	89	25	13	16	44	1.84
18593--18668	27	2.8	27	88	6	100	23	35	21	19	1.96
18487--18824	51	6.4	52	71	13	208	29	27	12	30	1.93
18537--18842	105	2.9	105	72	13	277	29	28	13	29	1.94
23109--23134	13	2.0	13	100	0	52	30	15	15	38	1.88
25507--25553	21	2.3	21	76	23	55	42	4	19	34	1.70
25679--25717	13	3.0	13	96	0	69	35	15	17	30	1.91
25703--25781	20	3.7	20	75	15	68	44	13	15	26	1.84
27701--27773	20	3.6	20	81	3	101	35	13	19	31	1.91
27719--27794	21	3.7	21	78	3	91	40	11	17	30	1.85
27701--27794	41	2.3	41	96	0	170	38	12	18	30	1.88
27833--27858	13	2.0	13	100	0	52	38	15	15	30	1.88
31909--31939	15	2.1	15	93	0	53	48	16	22	12	1.80
33956--34033	20	3.7	20	74	15	75	26	15	15	42	1.87
34022--34059	13	2.9	13	96	0	67	34	18	15	31	1.92
35850--35896	23	2.0	23	100	0	94	31	4	12	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36533--36605	20	3.6	20	81	3	101	35	13	19	31	1.91
36551--36626	21	3.7	21	78	3	91	40	11	17	30	1.85
36533--36626	41	2.3	41	96	0	170	38	12	18	30	1.88
36665--36690	13	2.0	13	100	0	52	38	15	15	30	1.88
37833--37863	15	2.1	15	93	0	53	12	22	16	48	1.80
39667--39711	21	2.1	21	84	8	56	22	20	4	53	1.63
41886--41911	13	2.0	13	100	0	52	30	15	15	38	1.88
51150--51190	16	2.6	15	88	7	55	85	4	9	0	0.73
51150--51226	27	2.9	28	78	18	83	80	7	11	0	0.90
52192--52768	55	10.3	55	84	6	707	27	29	20	22	1.99
52485--52573	29	3.2	29	64	20	80	28	34	17	19	1.95
53542--53606	19	3.7	19	76	23	79	33	12	15	38	1.85
53563--53619	13	3.9	13	76	24	60	36	14	15	33	1.88
53544--53622	32	2.5	32	97	0	149	36	12	15	35	1.85
56139--56214	27	2.8	27	88	6	100	23	35	21	19	1.96
56033--56370	51	6.4	54	71	12	204	29	27	12	30	1.93
56083--56388	105	2.9	105	71	13	277	29	28	13	28	1.94
58629--58700	28	2.6	28	86	0	90	26	19	31	22	1.97
58689--58858	52	3.3	50	76	11	155	32	13	24	29	1.93
58690--59025	104	3.2	102	70	14	272	32	13	25	29	1.93
58844--58916	27	2.6	28	89	6	105	23	20	31	24	1.98
58634--59027	212	1.9	212	88	4	607	31	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58904--59022	51	2.3	53	84	7	145	34	11	21	31	1.90
61146--61213	19	3.9	18	76	23	83	38	14	11	35	1.83
61168--61192	13	1.9	13	100	0	50	32	16	16	36	1.90
61149--61211	32	2.0	32	96	0	117	36	15	12	34	1.86
61249--61327	21	3.8	20	81	9	88	32	16	13	36	1.88
62060--62594	55	9.4	55	84	7	567	23	20	29	25	1.99
62104--62191	26	3.3	26	65	14	70	22	19	30	27	1.98
62060--62596	230	2.3	231	90	1	828	23	20	29	25	1.99
62106--62594	175	2.8	175	83	9	605	23	20	30	25	1.98
63557--63621	1	65.0	1	78	0	67	0	3	7	89	0.59
63563--63613	14	3.6	14	89	5	84	0	0	9	90	0.46
63563--63621	18	3.4	17	86	9	82	0	1	8	89	0.54
63563--63621	28	2.2	26	87	9	82	0	1	8	89	0.54

Tables:   1

The End!