Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold15
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4011073
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 11440 characters in sequence are not A, C, G, or T
File 11 of 25
Found at i:1699405 original size:15 final size:15
Alignment explanation
Indices: 1699385--1699415 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1699375 TAAAAATGTC
*
1699385 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1699400 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1699415 C
1 C
1699416 CAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1701513 original size:13 final size:13
Alignment explanation
Indices: 1701495--1701520 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1701485 ACATTTTTCT
1701495 TTGTATCGATACA
1 TTGTATCGATACA
1701508 TTGTATCGATACA
1 TTGTATCGATACA
1701521 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1703351 original size:20 final size:20
Alignment explanation
Indices: 1703326--1703364 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
1703316 TGATATGAAT
1703326 TACTTGATTAAGGGGGAGAA
1 TACTTGATTAAGGGGGAGAA
1703346 TACTTGATTAAGGGGGAGA
1 TACTTGATTAAGGGGGAGA
1703365 TTTATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.36, T:0.26
Consensus pattern (20 bp):
TACTTGATTAAGGGGGAGAA
Found at i:1704080 original size:13 final size:13
Alignment explanation
Indices: 1704062--1704087 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1704052 TACAGCAAGT
1704062 ATGTATCGATACA
1 ATGTATCGATACA
1704075 ATGTATCGATACA
1 ATGTATCGATACA
1704088 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1706023 original size:20 final size:20
Alignment explanation
Indices: 1705998--1706040 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1705988 TTCTTTAAAT
1705998 AAGAAACAAAAA-AAAACAAA
1 AAGAAACAAAAAGAAAA-AAA
*
1706018 AAGAAAGAAAAAGAAAAAAA
1 AAGAAACAAAAAGAAAAAAA
1706038 AAG
1 AAG
1706041 GCATGAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.84, C:0.05, G:0.12, T:0.00
Consensus pattern (20 bp):
AAGAAACAAAAAGAAAAAAA
Found at i:1706040 original size:10 final size:10
Alignment explanation
Indices: 1705998--1706040 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
1705988 TTCTTTAAAT
1705998 AAGAAACAAAA
1 AAGAAA-AAAA
*
1706009 AA-AAACAAA
1 AAGAAAAAAA
*
1706018 AAGAAAGAAA
1 AAGAAAAAAA
1706028 AAGAAAAAAA
1 AAGAAAAAAA
1706038 AAG
1 AAG
1706041 GCATGAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 5 0.18
10 21 0.75
11 2 0.07
ACGTcount: A:0.84, C:0.05, G:0.12, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:1706103 original size:16 final size:17
Alignment explanation
Indices: 1706084--1706122 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
1706074 GAAAAATGGG
1706084 AAAATGA-AAAAAGA-AA
1 AAAATGAGAAAAA-ACAA
1706100 AAAATGAGAAAAAACAA
1 AAAATGAGAAAAAACAA
1706117 AAAATG
1 AAAATG
1706123 TTGTATTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.08
Consensus pattern (17 bp):
AAAATGAGAAAAAACAA
Found at i:1706894 original size:112 final size:111
Alignment explanation
Indices: 1706694--1707406 Score: 728
Period size: 112 Copynumber: 6.4 Consensus size: 111
1706684 TCCATCGTGT
* *
1706694 CTAGGCAAAT-AGGACATGTATCTTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGT
1 CTAGGAAAATGAGG-CATGTATCCTATCAGTTTTGAAATTTTTGAG-CAATAACATCAAATTTGT
**
1706758 TTGATTTTCAAAGAAATTTGTGTTTTATACAATCTTG-TCCAATT-ATGC
64 TTGATTTTCAAAGAAATTCATGTTTTATACAA-CTTGATCC-ATTCATGC
* * * * * * *
1706806 CTAGGAAAATAAGGCATATATCTTATCAATTTTGAAAATTTTAAGCATTTAACATCAAATTTGTT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCA-ATAACATCAAATTTGTT
* ** *
1706871 TGATTTTCATAGAAATTCATGTTTTATACAACCAGATCCATTTATGC
65 TGATTTTCAAAGAAATTCATGTTTTATACAACTTGATCCATTCATGC
*
1706918 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTAAAATTTTTGAGCAAATAACATCAAATTTGTT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGC-AATAACATCAAATTTGTT
* * *
1706983 TGATTTTCAAAGTAATTCATGTTTTATACAACCTAATCCATTCATGC
65 TGATTTTCAAAGAAATTCATGTTTTATACAACTTGATCCATTCATGC
* ** * *
1707030 CTAGGAAAATGGGGTGTGTATCCTATCAGTTTTGAAATTTTTTAGCTAATAACATTAAATTTGTT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGC-AATAACATCAAATTTGTT
* * *
1707095 TGATTTTCAAAGTAATTCGTATTTTATACAACTTGATCCATTCATGC
65 TGATTTTCAAAGAAATTCATGTTTTATACAACTTGATCCATTCATGC
* ** * * *
1707142 CTAGGAAAATGGGGTGTGTATCCTATTAGTTTTGAAATTTTTTAGCCAATAACATCAAATTTATT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAG-CAATAACATCAAATTTGTT
* * * *
1707207 TGAGTTTCAAAGAAAGTT-ATGTTTTATGCAACATGATCCATTCGTGC
65 TGATTTTCAAAGAAA-TTCATGTTTTATACAACTTGATCCATTCATGC
* * * * * * * *
1707254 TTAGGAAAATAAGGCATTTATCCTTTCAATTTTGAAATTTTTTAGTTAACAACA-CTAAATTT-T
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAG-CAATAACATC-AAATTTGT
* * ** ** ** * *
1707317 TTAGATTTTC----AAATTCCTATTTTATATGACCAGATTTAGTCTTGC
64 TT-GATTTTCAAAGAAATTCATGTTTTATACAACTTGATCCATTCATGC
* *
1707362 CTAGGAAAATG-GGCTTGTATCGTATCAGTTTTGAAATTTTTGAGC
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGC
1707407 CAATCAAAGT
Statistics
Matches: 513, Mismatches: 78, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
107 29 0.06
108 30 0.06
111 11 0.02
112 436 0.85
113 7 0.01
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (111 bp):
CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCAATAACATCAAATTTGTTT
GATTTTCAAAGAAATTCATGTTTTATACAACTTGATCCATTCATGC
Found at i:1707098 original size:224 final size:222
Alignment explanation
Indices: 1706694--1707410 Score: 822
Period size: 224 Copynumber: 3.2 Consensus size: 222
1706684 TCCATCGTGT
* *
1706694 CTAGGCAAAT-AGGACATGTATCTTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGT
1 CTAGGAAAATGAGG-CATGTATCCTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGT
* * **
1706758 TTGATTTTCAAAGAAATTTGTGTTTTATACAATCTTGTCCAATT-ATGCCTAGGAAAATAAGGCA
65 TTGATTTTCAAAGAAA-TTATGTTTTATACAACCTAATCC-ATTCATGCCTAGGAAAATAAGGCA
* * * * *
1706822 TATATCTTATCAATTTTGAAAATTTTAAGC-ATTTAACATCAAATTTGTTTGATTTTCATAGAAA
128 TATATCCTATCAATTTTGAAATTTTTTAGCTA-ATAACATTAAATTTGTTTGATTTTCA-AGAAA
*
1706886 TTCATGTTTTATACAACCAGATCCATTTATGC
191 TTCATATTTTATACAACCAGATCCATTTATGC
* *
1706918 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTAAAATTTTTGAGCAAATAACATCAAATTTGTT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGTT
* ** ** *
1706983 TGATTTTCAAAGTAATTCATGTTTTATACAACCTAATCCATTCATGCCTAGGAAAATGGGGTGTG
66 TGATTTTCAAAGAAATT-ATGTTTTATACAACCTAATCCATTCATGCCTAGGAAAATAAGGCATA
* *
1707048 TATCCTATCAGTTTTGAAATTTTTTAGCTAATAACATTAAATTTGTTTGATTTTCAAAGTAATTC
130 TATCCTATCAATTTTGAAATTTTTTAGCTAATAACATTAAATTTGTTTGATTTTC-AAGAAATTC
* ** *
1707113 GTATTTTATACAACTTGATCCATTCATGC
194 ATATTTTATACAACCAGATCCATTTATGC
* ** * * *
1707142 CTAGGAAAATGGGGTGTGTATCCTATTAGTTTTGAAATTTTTTAGCCAATAACATCAAATTTATT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGTT
* * * * * * *
1707207 TGAGTTTCAAAGAAAGTTATGTTTTATGCAACATGATCCATTCGTGCTTAGGAAAATAAGGCATT
66 TGATTTTCAAAGAAA-TTATGTTTTATACAACCTAATCCATTCATGCCTAGGAAAATAAGGCATA
* * * *
1707272 TATCCTTTCAATTTTGAAATTTTTTAGTTAACAACACTAAATTT-TTTAGATTTTC---AAATTC
130 TATCCTATCAATTTTGAAATTTTTTAGCTAATAACATTAAATTTGTTT-GATTTTCAAGAAATTC
* ** ** *
1707333 CTATTTTATATGACCAGATTTAGTCT-TGC
194 ATATTTTATACAACCAGATCCA-TTTATGC
* *
1707362 CTAGGAAAATG-GGCTTGTATCGTATCAGTTTTGAAATTTTTGAGCCAAT
1 CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCCAAT
1707411 CAAAGTTTTT
Statistics
Matches: 419, Mismatches: 66, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
219 33 0.08
220 34 0.08
221 1 0.00
223 8 0.02
224 336 0.80
225 7 0.02
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (222 bp):
CTAGGAAAATGAGGCATGTATCCTATCAGTTTTGAAATTTTTGAGCCAATAACATCAAATTTGTT
TGATTTTCAAAGAAATTATGTTTTATACAACCTAATCCATTCATGCCTAGGAAAATAAGGCATAT
ATCCTATCAATTTTGAAATTTTTTAGCTAATAACATTAAATTTGTTTGATTTTCAAGAAATTCAT
ATTTTATACAACCAGATCCATTTATGC
Found at i:1707783 original size:87 final size:88
Alignment explanation
Indices: 1707645--1707805 Score: 209
Period size: 87 Copynumber: 1.8 Consensus size: 88
1707635 ATTAGAATAC
* * ** * * * *
1707645 ATTGGTATTTGCATCGTTTCATGTGCATTTGTGTATTTATTAATGCTTGCATTTGCATTATTTTA
1 ATTGGTATTTGCATCATTTCATATGCATTTGTCCATTTATTAAAGCTTGCATTTACATCATTTCA
1707710 TGTACGTCTGCACTTTAGATGAT
66 TGTACGTCTGCACTTTAGATGAT
*
1707733 ATTGGTATTTGCATTATTT-ATATGCATTTG-CCACTTTATTAAAGCTTGCATTTACATCATTTC
1 ATTGGTATTTGCATCATTTCATATGCATTTGTCCA-TTTATTAAAGCTTGCATTTACATCATTTC
*
1707796 ATGTGCGTCT
65 ATGTACGTCT
1707806 ACATCATTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
86 1 0.02
87 44 0.71
88 17 0.27
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (88 bp):
ATTGGTATTTGCATCATTTCATATGCATTTGTCCATTTATTAAAGCTTGCATTTACATCATTTCA
TGTACGTCTGCACTTTAGATGAT
Found at i:1708334 original size:60 final size:60
Alignment explanation
Indices: 1708217--1708485 Score: 264
Period size: 60 Copynumber: 4.5 Consensus size: 60
1708207 ATTGACTATT
* * *
1708217 TTGGTTTCACCTAAGTCATTGTTTAGGGTTT-T-GATTTTATCCTA-GCCATTT-AGTTGAGTT
1 TTGGTTTCACCAAAGTCATTGTTTA-GGTTTCTAG-TTTTAT-CTAGGCTATTTCA-TTGAGTC
* * * * *
1708277 TTGGTTTCACCAAAGTCATTGTTCAAGCTTCTAGTTTTATATACGCTATTTCATTGAGTC
1 TTGGTTTCACCAAAGTCATTGTTTAGGTTTCTAGTTTTATCTAGGCTATTTCATTGAGTC
* * * *
1708337 TTGGTTTTTCA-C-ATGTCATTATTTAGGTTTCTAGTTTTATCTAGGCCATTTCATTAAGTC
1 TTGG--TTTCACCAAAGTCATTGTTTAGGTTTCTAGTTTTATCTAGGCTATTTCATTGAGTC
** * *
1708397 TTGGTTT-TGCAGATGTCATTGTTTAGGTTTCTAGTTCTATCTAGGCTATTTCATTGAGTC
1 TTGGTTTCACCA-AAGTCATTGTTTAGGTTTCTAGTTTTATCTAGGCTATTTCATTGAGTC
* *
1708457 TTGGTTTTACCCAAGTCATTGTTTAGGTT
1 TTGGTTTCACCAAAGTCATTGTTTAGGTT
1708486 ACTTGTAGTG
Statistics
Matches: 174, Mismatches: 25, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
58 4 0.02
59 5 0.03
60 156 0.90
61 4 0.02
62 5 0.03
ACGTcount: A:0.19, C:0.15, G:0.18, T:0.48
Consensus pattern (60 bp):
TTGGTTTCACCAAAGTCATTGTTTAGGTTTCTAGTTTTATCTAGGCTATTTCATTGAGTC
Found at i:1712074 original size:20 final size:20
Alignment explanation
Indices: 1712049--1712102 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1712039 TATTTTCGAC
1712049 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
* *
1712069 ATGTATCAATACATTCATTT
1 ATGTATCGATACATTCACTT
1712089 ATTGTATCGATACA
1 A-TGTATCGATACA
1712103 AATTGTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.63
21 11 0.37
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:1712170 original size:21 final size:20
Alignment explanation
Indices: 1712140--1712178 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
1712130 GTTGGGACCT
1712140 TGTATCGATACATTCAAGAAA
1 TGTATCGATACATT-AAGAAA
*
1712161 TGTATTGATACATTAAGA
1 TGTATCGATACATTAAGA
1712179 CAAAAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATTAAGAAA
Found at i:1712979 original size:52 final size:52
Alignment explanation
Indices: 1712901--1713008 Score: 144
Period size: 52 Copynumber: 2.1 Consensus size: 52
1712891 GAAGAATAAT
* * * * * *
1712901 AAAGGTGCCAATAAGCTGATTCAAGGCTAGCAATATTGGGCTTAAAGATGAC
1 AAAGGTGCAAATAAGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
* *
1712953 AAAGGTGCAAATATGCTAATTCAAGGCTAGCGACATTAGGATTAAAAATGAC
1 AAAGGTGCAAATAAGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
1713005 AAAG
1 AAAG
1713009 ATGCCTCTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (52 bp):
AAAGGTGCAAATAAGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
Found at i:1713020 original size:52 final size:52
Alignment explanation
Indices: 1712901--1713043 Score: 142
Period size: 52 Copynumber: 2.8 Consensus size: 52
1712891 GAAGAATAAT
* * * * * * * *
1712901 AAAGGTGCCAATAAGCTGATTCAAGGCTAGCAATATTGGGCTTAAAGATGAC
1 AAAGATGCAAATATGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
* *
1712953 AAAGGTGCAAATATGCTAATTCAAGGCTAGCGACATTAGGATTAAAAATGAC
1 AAAGATGCAAATATGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
*** * * *
1713005 AAAGATGCCTCTATGCTGATTCAAAGCCAGCAACATTAG
1 AAAGATGCAAATATGCTAATTCAAGGCTAGCAACATTAG
1713044 AGTTAGAAAG
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (52 bp):
AAAGATGCAAATATGCTAATTCAAGGCTAGCAACATTAGGATTAAAAATGAC
Found at i:1713212 original size:52 final size:52
Alignment explanation
Indices: 1713153--1713424 Score: 173
Period size: 52 Copynumber: 5.2 Consensus size: 52
1713143 GACCAGCGAT
* *
1713153 ATTAGACTTAAAGATGA-AAAGAATGCTAATGTGCTGATTCGAGGCAAGCGAC
1 ATTAGACTTAAAGATGACAAAGAATGCCAATGTGCTGATTCAAGGCAA-CGAC
* * * * * * * *
1713205 GTTAGACTTAAAAATTA-GAAGAATGCGAATGTGTTGATTCAAGACCAATGAC
1 ATTAGACTTAAAGATGACAAAGAATGCCAATGTGCTGATTCAAG-GCAACGAC
* * * * *
1713257 ATTAGGCCT-AAGAATGATAAAG-ATGCCAATATGCTGATTCAAGGCTAACGAT
1 ATTAGACTTAAAG-ATGACAAAGAATGCCAATGTGCTGATTCAAGGC-AACGAC
* * * * * * *
1713309 ATTAGACTTAAAGATGACAAAG-GTGCCTATATGTTGATTTAAGGCTAGCGAT
1 ATTAGACTTAAAGATGACAAAGAATGCCAATGTGCTGATTCAAGGC-AACGAC
* * * * *
1713361 ATTGGACTT-AAGAAAGAAAAAG-GTGCTAATGTGCTGATTCAAGGCTAACGAC
1 ATTAGACTTAAAG-ATGACAAAGAATGCCAATGTGCTGATTCAAGGC-AACGAC
1713413 ATT-GAACTTAAA
1 ATTAG-ACTTAAA
1713425 AAGAGTTGGT
Statistics
Matches: 173, Mismatches: 39, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
51 7 0.04
52 155 0.90
53 11 0.06
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (52 bp):
ATTAGACTTAAAGATGACAAAGAATGCCAATGTGCTGATTCAAGGCAACGAC
Found at i:1713344 original size:104 final size:104
Alignment explanation
Indices: 1713236--1713424 Score: 229
Period size: 104 Copynumber: 1.8 Consensus size: 104
1713226 AATGCGAATG
* * *
1713236 TGTTGATTCAAGACCAATGACATTAGG-CCTAAGAATGATAAAGATGCCAATATGCTGATTCAAG
1 TGTTGATTCAAGACCAACGACATT-GGACCTAAGAAAGAAAAAGATGCCAATATGCTGATTCAAG
*
1713300 GCTAACGATATT-AGACTTAAAGATGACAAAGGTGCCTATA
65 GCTAACGACATTGA-ACTTAAAGATGACAAAGGTGCCTATA
* * * * * * * * *
1713340 TGTTGATTTAAGGCTAGCGATATTGGACTTAAGAAAGAAAAAGGTGCTAATGTGCTGATTCAAGG
1 TGTTGATTCAAGACCAACGACATTGGACCTAAGAAAGAAAAAGATGCCAATATGCTGATTCAAGG
1713405 CTAACGACATTGAACTTAAA
66 CTAACGACATTGAACTTAAA
1713425 AAGAGTTGGT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
103 2 0.03
104 67 0.96
105 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (104 bp):
TGTTGATTCAAGACCAACGACATTGGACCTAAGAAAGAAAAAGATGCCAATATGCTGATTCAAGG
CTAACGACATTGAACTTAAAGATGACAAAGGTGCCTATA
Found at i:1713392 original size:156 final size:155
Alignment explanation
Indices: 1713119--1713403 Score: 335
Period size: 156 Copynumber: 1.8 Consensus size: 155
1713109 TAAGGGTGAG
* *
1713119 AAGAGTGCCAATATACTGATTCACGACCAGCGATATTAGACTTAAAGATGAAAAGAATGCTAATG
1 AAGAGTGCCAATATACTGATTCAAGACCAACGATATTAGACTTAAAGATGAAAAGAATGCTAATG
* * * *
1713184 TGCTGATTCGAGGCAAGCGACGTTAGACTTAAAAATTAGAAGAATGCGAATGTGTTGATTCAAGA
66 T-CTGATTCAAGGCAAGCGACATTAGACTTAAAAA-TAGAAAAATGCGAATGTGCTGATTCAAGA
1713249 CCAATGACATTAGGCCTAAGAATGATA
129 CCAATGACATTAGGCCTAAGAATGATA
* * * *
1713276 AAGA-TGCCAATATGCTGATTCAAGGCTAACGATATTAGACTTAAAGATGACAAAG-GTGCCTAT
1 AAGAGTGCCAATATACTGATTCAAGACCAACGATATTAGACTTAAAGATGA-AAAGAATG-CTA-
* * * * * *
1713339 ATGT-TGATTTAAGGCTAGCGATATTGGACTTAAGAA-AGAAAAAGGTGCTAATGTGCTGATTCA
63 ATGTCTGATTCAAGGCAAGCGACATTAGACTTAAAAATAGAAAAA--TGCGAATGTGCTGATTCA
1713402 AG
126 AG
1713404 GCTAACGACA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
154 6 0.06
156 86 0.80
157 11 0.10
158 4 0.04
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (155 bp):
AAGAGTGCCAATATACTGATTCAAGACCAACGATATTAGACTTAAAGATGAAAAGAATGCTAATG
TCTGATTCAAGGCAAGCGACATTAGACTTAAAAATAGAAAAATGCGAATGTGCTGATTCAAGACC
AATGACATTAGGCCTAAGAATGATA
Found at i:1713534 original size:32 final size:32
Alignment explanation
Indices: 1713498--1713864 Score: 331
Period size: 32 Copynumber: 11.6 Consensus size: 32
1713488 GATGCCACTG
* * * * * *
1713498 ACTTGTATGGGCTTTTGAGAGGGTTGCCATCA
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* ***
1713530 ACTTGTGTGGACTTTAG-AAGGGTTGCCATTG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* *
1713561 ACTTGTGTGGACTTTAGAAAGGGTTTATCACCG
1 ACTTGTGTGGACTTTAGAAAGGG-TTACCACCA
*
1713594 ACTTGTGTAGG-CTTTAGAAAGGGTTATCACCA
1 ACTTGTGT-GGACTTTAGAAAGGGTTACCACCA
*
1713626 ACTTGTGTAGG-CTTTAGAAAGGGTTACCACTA
1 ACTTGTGT-GGACTTTAGAAAGGGTTACCACCA
* * *
1713658 ACTTGTGTGGGCTTTTGAAAGGGGCTACCACCA
1 ACTTGTGTGGACTTTAGAAA-GGGTTACCACCA
* * *
1713691 ACTTGTATGGACTTTAGAAAGAGTTACCATCAA
1 ACTTGTGTGGACTTTAGAAAGGGTTACCA-CCA
* *
1713724 AC-TGTGTGGACTTTAG-AAGGGTTGCCACCG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* *
1713754 ACTTGTGTGG-CTTTA-AAAGGGTTGCCACCG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* **
1713784 ACTTGTGTGGACTTTA-AAA-GGTTGCCACTG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* *
1713814 ACTTGTGTGGACTTTAG-AAGGGTTGCCACCG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
* * *
1713845 ATTTGTGTGGGCTGTAGAAA
1 ACTTGTGTGGACTTTAGAAA
1713865 AAAGTTGCCA
Statistics
Matches: 291, Mismatches: 32, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
30 60 0.21
31 78 0.27
32 95 0.33
33 56 0.19
34 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (32 bp):
ACTTGTGTGGACTTTAGAAAGGGTTACCACCA
Found at i:1713641 original size:65 final size:63
Alignment explanation
Indices: 1713498--1713864 Score: 311
Period size: 65 Copynumber: 5.8 Consensus size: 63
1713488 GATGCCACTG
* * * * * * * * ***
1713498 ACTTGTATGGGCTTTTGAGAGGGTTGCCATCAACTTGTGTGGACTTTAG-AAGGGTTGCCATTG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCGACTTGTGTGG-CTTTAGAAAGGGTTACCACCA
* *
1713561 ACTTGTGTGGACTTTAGAAAGGGTTTATCACCGACTTGTGTAGGCTTTAGAAAGGGTTATCACCA
1 ACTTGTGTGGACTTTAGAAAGGG-TTACCACCGACTTGTGT-GGCTTTAGAAAGGGTTACCACCA
** * *
1713626 ACTTGTGTAGG-CTTTAGAAAGGGTTACCACTAACTTGTGTGGGCTTTTGAAAGGGGCTACCACC
1 ACTTGTGT-GGACTTTAGAAAGGGTTACCACCGACTTGTGT-GGCTTTAGAAA-GGGTTACCACC
1713690 A
63 A
* * ** * *
1713691 ACTTGTATGGACTTTAGAAAGAGTTACCATCAAAC-TGTGTGGACTTTAG-AAGGGTTGCCACCG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCA-CCGACTTGTGTGG-CTTTAGAAAGGGTTACCACCA
* * **
1713754 ACTTGTGTGG-CTTTA-AAAGGGTTGCCACCGACTTGTGTGGACTTTA-AAA-GGTTGCCACTG
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCGACTTGTGTGG-CTTTAGAAAGGGTTACCACCA
* * *
1713814 ACTTGTGTGGACTTTAG-AAGGGTTGCCACCGATTTGTGTGGGCTGTAGAAA
1 ACTTGTGTGGACTTTAGAAAGGGTTACCACCGACTTGTGT-GGCTTTAGAAA
1713865 AAAGTTGCCA
Statistics
Matches: 255, Mismatches: 35, Indels: 29
0.80 0.11 0.09
Matches are distributed among these distances:
60 23 0.09
61 55 0.22
62 10 0.04
63 37 0.15
64 49 0.19
65 75 0.29
66 6 0.02
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (63 bp):
ACTTGTGTGGACTTTAGAAAGGGTTACCACCGACTTGTGTGGCTTTAGAAAGGGTTACCACCA
Found at i:1714044 original size:33 final size:33
Alignment explanation
Indices: 1714007--1714311 Score: 137
Period size: 33 Copynumber: 9.7 Consensus size: 33
1713997 CACAAAGCTG
*
1714007 TGGACTGAAAAGGAAAAAGGTGCCATGGAGTTA
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* * *
1714040 TGGACTTAAAA-G-----GGTGCTATAGAGTTG
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* * * * *
1714067 TGGACTTAAATGAAAAAATGTGCCATGGAGCTG
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* * * *
1714100 TGGACTTAAAAAG-AAAA-GTACCATGGAATGA
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* **
1714131 TGGACTTTAAAA-GAAAAATGTGCCACAGAGTTA
1 TGGAC-TTAAAAGGAAAAAGGTGCCATGGAGTTA
** *
1714164 TGGACTTAAAA-G-----GGTGCCACAGAGTTG
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* * * * * *
1714191 TGAACTGAAAAAGAAAAAGGGCGCCATGTAGTTG
1 TGGACTTAAAAGGAAAAA-GGTGCCATGGAGTTA
* * * * *
1714225 TTGACTT--AA--AAAAGGGTGCCACGAAGTTG
1 TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
* *
1714254 TGGACTTAAAAAGAAAAAAGGGTGCCATGGAGTTG
1 TGGACTT-AAAAGGAAAAA-GGTGCCATGGAGTTA
1714289 TGGACTTTAAAA-GAAAAAGGTGC
1 TGGAC-TTAAAAGGAAAAAGGTGC
1714312 TACAGTGTTG
Statistics
Matches: 206, Mismatches: 43, Indels: 46
0.70 0.15 0.16
Matches are distributed among these distances:
27 44 0.21
28 1 0.00
29 18 0.09
30 4 0.02
31 15 0.07
32 26 0.13
33 50 0.24
34 24 0.12
35 22 0.11
36 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.22
Consensus pattern (33 bp):
TGGACTTAAAAGGAAAAAGGTGCCATGGAGTTA
Found at i:1714050 original size:27 final size:27
Alignment explanation
Indices: 1714020--1714076 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
1714010 ACTGAAAAGG
*
1714020 AAAAAGGTGCCATGGAGTTATGGACTT
1 AAAAAGGTGCCATAGAGTTATGGACTT
* * *
1714047 AAAAGGGTGCTATAGAGTTGTGGACTT
1 AAAAAGGTGCCATAGAGTTATGGACTT
1714074 AAA
1 AAA
1714077 TGAAAAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (27 bp):
AAAAAGGTGCCATAGAGTTATGGACTT
Found at i:1714069 original size:60 final size:60
Alignment explanation
Indices: 1713954--1714301 Score: 252
Period size: 60 Copynumber: 5.6 Consensus size: 60
1713944 TTACGAACTT
* * * * * * * *
1713954 AAAAGGAAAAAGGTACCACGGTGTTATGTATTTAAAAAGGTGCCACAAAGCTGTGGACTG
1 AAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTG
* * *
1714014 AAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGGGTGCTATAGAGTTGTGGACTT
1 AAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTG
* * * * * * * ** *
1714074 AAATGAAAAAATGTGCCATGGAGCTGTGGACTTAAAAAGAAAAGTACCATGGA-ATGATGGACTT
1 AAAAGGAAAAAGGTGCCATGGAGTTATGGACTT-AAAAG---GGTGCCACAGAGTTG-TGGAC-T
*
1714138 T
60 G
* ** *
1714139 AAAA-GAAAAATGTGCCACAGAGTTATGGACTTAAAAGGGTGCCACAGAGTTGTGAACTG
1 AAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTG
* * * * * *
1714198 AAAAAGAAAAAGGGCGCCATGTAGTTGTTGACTTAAAAAAGGGTGCCAC-GAAGTTGTGGACTTA
1 AAAAGGAAAAA-GGTGCCATGGAGTTATGGACTT--AAAAGGGTGCCACAG-AGTTGTGGAC-TG
* *
1714262 AAAAGAAAAAAGGGTGCCATGGAGTTGTGGACTTTAAAAG
1 AAAAGGAAAAA-GGTGCCATGGAGTTATGGAC-TTAAAAG
1714302 AAAAAGGTGC
Statistics
Matches: 226, Mismatches: 48, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
59 5 0.02
60 94 0.42
61 22 0.10
62 1 0.00
63 34 0.15
64 63 0.28
65 7 0.03
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (60 bp):
AAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGGGTGCCACAGAGTTGTGGACTG
Found at i:1714201 original size:27 final size:27
Alignment explanation
Indices: 1714150--1714201 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1714140 AAAGAAAAAT
* *
1714150 GTGCCACAGAGTTATGGACTTAAAAGG
1 GTGCCACAGAGTTATGAACTGAAAAGG
*
1714177 GTGCCACAGAGTTGTGAACTGAAAA
1 GTGCCACAGAGTTATGAACTGAAAA
1714202 AGAAAAAGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (27 bp):
GTGCCACAGAGTTATGAACTGAAAAGG
Found at i:1714242 original size:63 final size:64
Alignment explanation
Indices: 1714158--1714300 Score: 186
Period size: 64 Copynumber: 2.3 Consensus size: 64
1714148 ATGTGCCACA
*
1714158 GAGTTATGGACTT--AAAAGGGTGCCAC-AGAGTTGTGAACTGAAAAAG-AAAAAGGGCGCCATG
1 GAGTTGTGGACTTAAAAAAGGGTGCCACGA-AGTTGTGAACTGAAAAAGAAAAAAGGGCGCCATG
* * * * *
1714219 TAGTTGTTGACTTAAAAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGAAAAAAGGGTGCCATG
1 GAGTTGTGGACTTAAAAAAGGGTGCCACGAAGTTGTGAACTGAAAAAGAAAAAAGGGCGCCATG
*
1714283 GAGTTGTGGACTTTAAAA
1 GAGTTGTGGACTTAAAAA
1714301 GAAAAAGGTG
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
61 10 0.14
63 29 0.42
64 30 0.43
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.22
Consensus pattern (64 bp):
GAGTTGTGGACTTAAAAAAGGGTGCCACGAAGTTGTGAACTGAAAAAGAAAAAAGGGCGCCATG
Found at i:1714245 original size:29 final size:29
Alignment explanation
Indices: 1714204--1714265 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
1714194 ACTGAAAAAG
* * *
1714204 AAAAAGGGCGCCATGTAGTTGTTGACTTA
1 AAAAAGGGCGCCACGAAGTTGTGGACTTA
*
1714233 AAAAAGGGTGCCACGAAGTTGTGGACTTA
1 AAAAAGGGCGCCACGAAGTTGTGGACTTA
1714262 AAAA
1 AAAA
1714266 GAAAAAAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (29 bp):
AAAAAGGGCGCCACGAAGTTGTGGACTTA
Found at i:1714271 original size:35 final size:34
Alignment explanation
Indices: 1714171--1714331 Score: 140
Period size: 35 Copynumber: 4.9 Consensus size: 34
1714161 TTATGGACTT
* *
1714171 AAAAGGGTGCCAC-AGAGTTGTGAACTGAAAAAGA
1 AAAAGGGTGCCACGA-AGTTGTGGACTTAAAAAGA
* * * *
1714205 AAAAGGGCGCCATGTAGTTGTTGACTT----A-A
1 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGA
1714234 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAG-A
* * *
1714269 AAAAGGGTGCCATGGAGTTGTGGACTTTAAAAGA
1 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGA
* *
1714303 AAAA-GGTGCTAC-AGTGTTGTGGACTTAAA
1 AAAAGGGTGCCACGA-AGTTGTGGACTTAAA
1714332 GGGTGCACGG
Statistics
Matches: 101, Mismatches: 18, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
29 24 0.24
30 1 0.01
33 20 0.20
34 25 0.25
35 31 0.31
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (34 bp):
AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGA
Found at i:1714272 original size:124 final size:121
Alignment explanation
Indices: 1713987--1714301 Score: 326
Period size: 124 Copynumber: 2.5 Consensus size: 121
1713977 TTATGTATTT
* * *
1713987 AAAAAGGTGCCACAAAGCTGTGGACTGAAAAGGAAAAAGGTGCCATGGAGTTATGGACTTAAAAG
1 AAAAAGGTGCCACGAAG-TGTGGACTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTTAAAAG
* * * * * * *
1714052 GGTGCTATAGAGTTGTGGACTTAAATGAAAAAATGTGCCATGGAGCTGTGGACTTAAA
65 GGTGCCACAGAGTTGTGAACTAAAAAGAAAAAAGGCGCCATGGAGCTGTGGACTT-AA
* * * * * **
1714110 AAGAAAAGTACCATGGAA-TGATGGACTTTAAAAGAAAAATGTGCCACAGAGTTATGGACTTAAA
1 AA-AAAGGTGCCA-CGAAGTG-TGGACTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTTAAA
* * * *
1714174 AGGGTGCCACAGAGTTGTGAACTGAAAAAGAAAAAGGGCGCCATGTAGTTGTTGACTTAA
63 AGGGTGCCACAGAGTTGTGAACT-AAAAAGAAAAAAGGCGCCATGGAGCTGTGGACTTAA
* *
1714234 AAAAGGGTGCCACGAAGTTGTGGACTTAAAAAGAAAAAAGGGTGCCATGGAGTTGTGGACTTTAA
1 AAAAAGGTGCCACGAAG-TGTGGACTTAAAAAG-AAAAA-GGTGCCATGGAGTTATGGAC-TTAA
1714299 AAG
62 AAG
1714302 AAAAAGGTGC
Statistics
Matches: 153, Mismatches: 30, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
122 3 0.02
123 23 0.15
124 76 0.50
125 44 0.29
126 7 0.05
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (121 bp):
AAAAAGGTGCCACGAAGTGTGGACTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTTAAAAGG
GTGCCACAGAGTTGTGAACTAAAAAGAAAAAAGGCGCCATGGAGCTGTGGACTTAA
Found at i:1714368 original size:31 final size:32
Alignment explanation
Indices: 1714333--1714422 Score: 96
Period size: 32 Copynumber: 2.9 Consensus size: 32
1714323 GGACTTAAAG
* *
1714333 GGTG-CACGGAGTTATGGACTTTGGAGAAAAA
1 GGTGCCACGGAGTCATGGACTTTGAAGAAAAA
*
1714364 GGTGCCACGGAGTCATGGACTTTGAAGAAGAA
1 GGTGCCACGGAGTCATGGACTTTGAAGAAAAA
* ** *
1714396 --TGCCACTGAGTTGTGGATTTTGAAGAA
1 GGTGCCACGGAGTCATGGACTTTGAAGAA
1714423 GGGTGTCATG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 23 0.45
31 4 0.08
32 24 0.47
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.24
Consensus pattern (32 bp):
GGTGCCACGGAGTCATGGACTTTGAAGAAAAA
Found at i:1714373 original size:32 final size:32
Alignment explanation
Indices: 1714333--1714452 Score: 106
Period size: 30 Copynumber: 3.9 Consensus size: 32
1714323 GGACTTAAAG
*
1714333 GGTG-CACGGAGTTATGGACTTTGGAGAAAAA
1 GGTGCCACGGAGTTATGGACTTTGAAGAAAAA
* *
1714364 GGTGCCACGGAGTCATGGACTTTGAAGAAGAA
1 GGTGCCACGGAGTTATGGACTTTGAAGAAAAA
* * * *
1714396 --TGCCACTGAGTTGTGGATTTTGAAG--AAG
1 GGTGCCACGGAGTTATGGACTTTGAAGAAAAA
* * * *
1714424 GGTGTCATGGAGTTGTGGACTTTAAAGAA
1 GGTGCCACGGAGTTATGGACTTTGAAGAA
1714453 GGATACCACC
Statistics
Matches: 70, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
28 1 0.01
30 41 0.59
31 4 0.06
32 24 0.34
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (32 bp):
GGTGCCACGGAGTTATGGACTTTGAAGAAAAA
Found at i:1714383 original size:57 final size:59
Alignment explanation
Indices: 1714270--1714385 Score: 137
Period size: 57 Copynumber: 2.0 Consensus size: 59
1714260 TAAAAAGAAA
* * * * **
1714270 AAAGGGTGCCATGGAGTTGTGGACTTTAAAAGAAAAAGGTGCTACAGTGTTGTGGACTT
1 AAAGGGTGCCACGGAGTTATGGACTTTAAAAGAAAAAGGTGCCACAGAGTCATGGACTT
** *
1714329 AAAGGGTG-CACGGAGTTATGGACTTT-GGAGAAAAAGGTGCCACGGAGTCATGGACTT
1 AAAGGGTGCCACGGAGTTATGGACTTTAAAAGAAAAAGGTGCCACAGAGTCATGGACTT
1714386 TGAAGAAGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
57 24 0.50
58 16 0.33
59 8 0.17
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.24
Consensus pattern (59 bp):
AAAGGGTGCCACGGAGTTATGGACTTTAAAAGAAAAAGGTGCCACAGAGTCATGGACTT
Found at i:1721024 original size:65 final size:65
Alignment explanation
Indices: 1720950--1721081 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
1720940 AACAAGTGAA
* *
1720950 ATAAAGTTGTATAAAACAATTCACACAAAGTAACAATAAAAAAAGCAGGGACAATTGAAATATAT
1 ATAAAGTTGTAAAAAACAATTCACACAAAGTAACAATAAAAAAAGCAGGGACAATCGAAATATAT
* * *
1721015 ATAAAGTTGTAAAAAATAATTCACACAAAGTAACAATAAAAAAAGGAGGGACGATCGAAATATAT
1 ATAAAGTTGTAAAAAACAATTCACACAAAGTAACAATAAAAAAAGCAGGGACAATCGAAATATAT
1721080 AT
1 AT
1721082 CTCACAATTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (65 bp):
ATAAAGTTGTAAAAAACAATTCACACAAAGTAACAATAAAAAAAGCAGGGACAATCGAAATATAT
Found at i:1723437 original size:20 final size:20
Alignment explanation
Indices: 1723414--1723506 Score: 125
Period size: 20 Copynumber: 4.7 Consensus size: 20
1723404 AAAAAGACAG
*
1723414 AATGTATCGATACATTGA-A
1 AATGTATCGATACATTCATA
1723433 GAATGTATCGATACATTCATA
1 -AATGTATCGATACATTCATA
*
1723454 CATGTATCGATACATTCATA
1 AATGTATCGATACATTCATA
* * *
1723474 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCATA
1723494 AATGTATCGATAC
1 AATGTATCGATAC
1723507 CTCTGGGTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
20 66 0.99
21 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:1723468 original size:12 final size:12
Alignment explanation
Indices: 1723435--1723488 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
1723425 ACATTGAAGA
1723435 ATGTATCGATAC
1 ATGTATCGATAC
1723447 A--T-TC-ATAC
1 ATGTATCGATAC
1723455 ATGTATCGATAC
1 ATGTATCGATAC
1723467 A--T-TC-ATAC
1 ATGTATCGATAC
1723475 ATGTATCGATAC
1 ATGTATCGATAC
1723487 AT
1 AT
1723489 TGAAAAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
8 10 0.29
9 4 0.12
10 4 0.12
11 4 0.12
12 12 0.35
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:1724856 original size:20 final size:21
Alignment explanation
Indices: 1724831--1724870 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1724821 AATTTCTTAG
*
1724831 AATGTATTGATACAT-TGAAC
1 AATGTATCGATACATCTGAAC
1724851 AATGTATCGATACATCTGAA
1 AATGTATCGATACATCTGAA
1724871 AAACCCAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATCTGAAC
Found at i:1726344 original size:37 final size:38
Alignment explanation
Indices: 1726300--1726375 Score: 136
Period size: 37 Copynumber: 2.0 Consensus size: 38
1726290 AATTGACAAT
*
1726300 AAATTTGTAAAAAGGGGGAGAGATAAAAG-AAAAGGGG
1 AAATTTGTAAAAAGGGGAAGAGATAAAAGAAAAAGGGG
1726337 AAATTTGTAAAAAGGGGAAGAGATAAAAGAAAAAGGGG
1 AAATTTGTAAAAAGGGGAAGAGATAAAAGAAAAAGGGG
1726375 A
1 A
1726376 GAAATATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 28 0.76
38 9 0.24
ACGTcount: A:0.54, C:0.00, G:0.33, T:0.13
Consensus pattern (38 bp):
AAATTTGTAAAAAGGGGAAGAGATAAAAGAAAAAGGGG
Found at i:1731283 original size:155 final size:154
Alignment explanation
Indices: 1731002--1731319 Score: 451
Period size: 155 Copynumber: 2.1 Consensus size: 154
1730992 TTTTGTGTCC
* ** *
1731002 TTTAGGGTTACTAGGATACTTTCATGTTGAAGGTATACTTAAGGGCATTTTGATAATTTTTCTTA
1 TTTAGGGTTACGAGGATACTTTCACATTGAAGGTATACTTAAAGGCATTTTGATAATTTTTCTTA
* * **
1731067 GAATCGAGTCCTAGGTAGTCATTAGGTCACTTTTATGCCAAAGGTCTACATTTAGGATAGGTTTT
66 AAATCGAGTCCTAGATAGTCATTAGGTCACTTTTATGCCAAAGGTCTACATTTAGGATAGGTTCA
*
1731132 CCTTTTTATGATCCTTTCATATGT
131 CCTTTTTATGATCCTTTCATATCT
*
1731156 TTTAGGGTTATCGA-GATACTTTCACATTGAAGGTATACTTTAAAGGTATTTTGATAATTTTT-T
1 TTTAGGGTTA-CGAGGATACTTTCACATTGAAGGTATAC-TTAAAGGCATTTTGATAATTTTTCT
* ** *
1731219 CTAAAATCGAGTTCTAGATAGTCATTAGGTTGCTTTTATGCCAAAGGTTTACATTTAGGATAGGT
64 -TAAAATCGAGTCCTAGATAGTCATTAGGTCACTTTTATGCCAAAGGTCTACATTTAGGATAGGT
* *
1731284 TCACCTTTTTATGATCTTTTCGTATCT
128 TCACCTTTTTATGATCCTTTCATATCT
1731311 TTTAGGGTT
1 TTTAGGGTT
1731320 TAGGATTTAC
Statistics
Matches: 145, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
154 33 0.23
155 112 0.77
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (154 bp):
TTTAGGGTTACGAGGATACTTTCACATTGAAGGTATACTTAAAGGCATTTTGATAATTTTTCTTA
AAATCGAGTCCTAGATAGTCATTAGGTCACTTTTATGCCAAAGGTCTACATTTAGGATAGGTTCA
CCTTTTTATGATCCTTTCATATCT
Found at i:1731709 original size:20 final size:20
Alignment explanation
Indices: 1731684--1731758 Score: 116
Period size: 20 Copynumber: 3.8 Consensus size: 20
1731674 TTTTCACAAT
1731684 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
1731704 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
1731724 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
1731744 ATGTATCGATACATT
1 TTGTATCGATACATT
1731759 CAGGCATTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
19 1 0.02
20 50 0.98
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:1734191 original size:16 final size:16
Alignment explanation
Indices: 1734170--1734200 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1734160 GGGATACTCT
1734170 AACACCAATTTTTCAA
1 AACACCAATTTTTCAA
1734186 AACACCAATTTTTCA
1 AACACCAATTTTTCA
1734201 CAATTGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (16 bp):
AACACCAATTTTTCAA
Found at i:1734244 original size:28 final size:28
Alignment explanation
Indices: 1734212--1734273 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
1734202 AATTGGAGAT
* *
1734212 ACCCCGTTATTTCAT-CAGGGATACTTCA
1 ACCCCGTTATTTC-TGAAGGGATACTCCA
1734240 ACCCCGTTATTTCTGAAGGGATACTCCA
1 ACCCCGTTATTTCTGAAGGGATACTCCA
1734268 ACCCCG
1 ACCCCG
1734274 GCTTTATATC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
ACCCCGTTATTTCTGAAGGGATACTCCA
Found at i:1734422 original size:51 final size:51
Alignment explanation
Indices: 1734367--1734484 Score: 168
Period size: 51 Copynumber: 2.3 Consensus size: 51
1734357 ATTTTTGAGG
* *
1734367 GGATACTCCAACCCTGATTTTATTTCTAAAATACCAATTT-TCCACAATCGA
1 GGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCT-CACAATCGA
*
1734418 GGATACTCCAACTCC-GATTTTATTTCCAAAACACCAATTTCTCACAATCGG
1 GGATACTCCAAC-CCTGATTTTATTTCCAAAACACCAATTTCTCACAATCGA
*
1734469 GGATACTCAAACCCTG
1 GGATACTCCAACCCTG
1734485 TTATTTTCGC
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
50 2 0.03
51 55 0.92
52 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (51 bp):
GGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCTCACAATCGA
Found at i:1734501 original size:79 final size:78
Alignment explanation
Indices: 1734418--1734602 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 78
1734408 CCACAATCGA
*
1734418 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAA-TTTCTCACAATCGGGGATACTCAAACC
1 GGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTCT-ACAATCAGGGATACTCAAACC
*
1734482 CTGTTATTTTCGCGG
64 CTGTTATTTTCGAGG
* * * * * *
1734497 GGATACTCTAACCTCGATTTTATTTTCAAAATATCAATTTTCTATAATCAGGGATACTCCAACCC
1 GGATACTCCAACC-CGATTTTATTTCCAAAACACCAATTTTCTACAATCAGGGATACTCAAACCC
1734562 TGTTATTTTCGAGG
65 TGTTATTTTCGAGG
1734576 GGATACTCCAACCCCGATTTTTATTTC
1 GGATACTCCAA-CCCGA-TTTTATTTC
1734603 TAGAACACTG
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 76 0.83
80 15 0.16
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.35
Consensus pattern (78 bp):
GGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTCTACAATCAGGGATACTCAAACCCT
GTTATTTTCGAGG
Found at i:1744571 original size:13 final size:13
Alignment explanation
Indices: 1744553--1744580 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1744543 TACATAAAAT
1744553 ATTGTATCGATAC
1 ATTGTATCGATAC
1744566 ATTGTATCGATAC
1 ATTGTATCGATAC
1744579 AT
1 AT
1744581 AAATTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:1744595 original size:32 final size:33
Alignment explanation
Indices: 1744534--1744598 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
1744524 TTTCAACGAT
1744534 TTGTATCGATACATAAAATATTGTATCGATACA
1 TTGTATCGATACATAAAATATTGTATCGATACA
*
1744567 TTGTATCGATACAT-AAATTTTGTATCGATACA
1 TTGTATCGATACATAAAATATTGTATCGATACA
1744599 ATTTAAGCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATAAAATATTGTATCGATACA
Found at i:1744659 original size:13 final size:13
Alignment explanation
Indices: 1744641--1744665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1744631 ATTACTCAAA
1744641 TGTATCGATACAT
1 TGTATCGATACAT
1744654 TGTATCGATACA
1 TGTATCGATACA
1744666 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1744678 original size:20 final size:20
Alignment explanation
Indices: 1744653--1744705 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
1744643 TATCGATACA
*
1744653 TTGTATCGATACACTGATCT
1 TTGTATCGATACACTAATCT
1744673 TTGTATCGATACACTAATCT
1 TTGTATCGATACACTAATCT
1744693 TTGTATCGATACA
1 TTGTATCGATACA
1744706 TGCAGGCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACACTAATCT
Found at i:1747985 original size:18 final size:17
Alignment explanation
Indices: 1747964--1747997 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1747954 AAAAAAACAA
1747964 AAAACAACAAAAAAAAGT
1 AAAACAA-AAAAAAAAGT
*
1747982 AAAACAAAGAAAAAAG
1 AAAACAAAAAAAAAAG
1747998 AAAGAAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.09, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAACAAAAAAAAAAGT
Found at i:1748006 original size:16 final size:17
Alignment explanation
Indices: 1747964--1748010 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
1747954 AAAAAAACAA
*
1747964 AAAACAACAAAAAAAAGT
1 AAAACAA-AGAAAAAAGT
1747982 AAAACAAAGAAAAAAG-
1 AAAACAAAGAAAAAAGT
1747998 AAAGA-AAAGAAAA
1 AAA-ACAAAGAAAA
1748011 GAACCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 11 0.41
17 9 0.33
18 7 0.26
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.02
Consensus pattern (17 bp):
AAAACAAAGAAAAAAGT
Found at i:1748010 original size:25 final size:25
Alignment explanation
Indices: 1747943--1748010 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 25
1747933 GAATCCCACT
** *
1747943 AACAAAAAAATAAAAAAACAAAAAAC
1 AACAAAAAAA-AGTAAAACAAAAAAA
1747969 AACAAAAAAAAGTAAAACAAAGAAAA
1 AACAAAAAAAAGTAAAACAAA-AAAA
* *
1747995 AAGAAAGAAAAG-AAAA
1 AACAAAAAAAAGTAAAA
1748011 GAACCTACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 13 0.36
26 23 0.64
ACGTcount: A:0.82, C:0.07, G:0.07, T:0.03
Consensus pattern (25 bp):
AACAAAAAAAAGTAAAACAAAAAAA
Found at i:1749197 original size:61 final size:56
Alignment explanation
Indices: 1749087--1749280 Score: 248
Period size: 61 Copynumber: 3.4 Consensus size: 56
1749077 TTTCACCCTT
* *
1749087 TAGTCCTCAAAGAGCAAGACGCC-TTTCAAAGCCTACACAAGTTGGTGGCACTTGTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCACTT-TC
* *
1749143 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGGCATTTTTT
1 TAGTCCTCAAAGAGCAGGACGCC--TT--TTCAAAGCCCACACAAGTTGGTGGCA-CTTTC
* *
1749204 TAGTCCTCAAAGAGCAGGATGCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTCC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTC
* *
1749259 CAGTCCTCAAAGAGTAGGACGC
1 TAGTCCTCAAAGAGCAGGACGC
1749281 TCTCTCCTTT
Statistics
Matches: 121, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
55 21 0.17
56 45 0.37
57 2 0.02
59 3 0.02
61 48 0.40
62 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (56 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTC
Found at i:1749380 original size:211 final size:211
Alignment explanation
Indices: 1749014--1749495 Score: 689
Period size: 211 Copynumber: 2.3 Consensus size: 211
1749004 GACGCCTTCT
* * * * *
1749014 CCTTTTAAAGCCCACACAAGTTGGTGGAACCTTCTAGTCCTCAAAGAGCAAGATGCTCTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACGCTCTCTCCTT
* *
1749079 TCACCCTTTAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCTACACAAGTTGGTGGCACTTGTCT
66 TCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTGTCT
**
1749144 AGTCCTCAAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGGCATTTTTTTAGT
131 AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGT
1749208 CCTCAAAGAGCAGGATG
195 CCTCAAAGAGCAGGATG
1749225 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGTAGGACGCTCTCTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGTAGGACGCTCTCTCCT
* * * * *
1749289 TTCGCCCTTTAGTCCTCAAAGAGCAGGATACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC
65 TTCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTGTC
* *
1749354 TAGTCCTCAAAGAGTAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
130 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
* * *
1749419 CCTCATAGTGTAGGATG
195 CCTCAAAGAGCAGGATG
* *
1749436 CTTTCTCTTTGCAAAGTCCACAGAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGAC
1 C---CT-TTT--AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGAC
1749496 ACCTTTCTTT
Statistics
Matches: 241, Mismatches: 21, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
210 3 0.01
211 162 0.67
212 26 0.11
214 2 0.01
215 3 0.01
217 42 0.17
218 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (211 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACGCTCTCTCCTT
TCACCCTTTAGTCCTCAAAGAGCAAGACACCTTTCAAAGCCCACACAAGTTGGTGGCACTTGTCT
AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTC
CTCAAAGAGCAGGATG
Found at i:1749451 original size:61 final size:61
Alignment explanation
Indices: 1749320--1749536 Score: 278
Period size: 61 Copynumber: 3.5 Consensus size: 61
1749310 AGCAGGATAC
* *
1749320 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGATGCCTTT-T
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGATG-CTTTCT
* *
1749381 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCATAGTGTAGGATGCTTTCT
1 -CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGATGCTTTCT
* * * **
1749442 CTTTGCAAAGTCCACAGAAGTTGGTGGCAC-CTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
1 CTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGA-TGCTTTCT
* *
1749504 TTTTCAAAGCCCACACGAGTTGGTGGCACTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTT
1749537 TTGTCTTCAA
Statistics
Matches: 134, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
60 8 0.06
61 88 0.66
62 38 0.28
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (61 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGATGCTTTCT
Found at i:1749547 original size:61 final size:63
Alignment explanation
Indices: 1749320--1749563 Score: 277
Period size: 61 Copynumber: 4.0 Consensus size: 63
1749310 AGCAGGATAC
* **
1749320 CTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGATGCCTTT-T
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
* * * **
1749381 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCATAGTGTAGGA-TGCTTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
* * * *
1749442 CTTTGCAAAGTCCACAGAAGTTGGTGGCAC-CTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
* ** * *
1749504 -TTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TTGTCTTCAAAGAGCAGGACACACTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGACAC-CTTT
1749564 ATTTTCCTCT
Statistics
Matches: 153, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
60 4 0.03
61 114 0.75
62 35 0.23
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (63 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCCAGTCCTCAAAGAGTAGGACACCTTTCT
Found at i:1749742 original size:84 final size:83
Alignment explanation
Indices: 1749535--1749886 Score: 262
Period size: 87 Copynumber: 4.3 Consensus size: 83
1749525 GGTGGCACTT
* * * * * * *
1749535 TTTTGTCTTCAAAGAGCAGGACACACTTT-ATTTTCCTCTCTCCTTTGTCCTCAAAAAGCAGGAC
1 TTTTGTCCTCAAAAAGCAGGACGCA-TTTCATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGAC
* * ** *
1749599 ACACTTCATTCCCTTATTGCCTC
65 ATACTTTATTTTC-TCTT---TC
* * * *
1749622 TTTTGTCCTCAAAGAGCAGGACGTATTTTATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACG
1 TTTTGTCCTCAAAAAGCAGGACGCATTTCATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACA
1749687 TACTTTATTTTCCTCTTTC
66 TACTTTATTTT-CTCTTTC
* *
1749706 TTTTGTCCTCAAAAAGCAGGACGCATTTCGTTTTCCTTTTTTCTTTTATCCTCGAAA-AGCAGGA
1 TTTTGTCCTCAAAAAGCAGGACGCATTTCATTTTCC-TTTTTCTTTTGTCCTC-AAAGAGCAGGA
* *
1749770 CATAC--TCTTTT-TC--AC
64 CATACTTTATTTTCTCTTTC
* * * *
1749785 -TTTGTCCTCAAGAAGCAGGACGC-TTTCCTTTT-CTTTGTTCCTTTGTCCTCAAGGAGC-GAGA
1 TTTTGTCCTCAAAAAGCAGGACGCATTTCATTTTCCTTT-TTCTTTTGTCCTCAAAGAGCAG-GA
* *
1749846 CCTA-TTTCATTCTCT-TTTC
64 CATACTTT-ATTTTCTCTTTC
* *
1749865 CTTTGTCCTCAAAAAGTAGGAC
1 TTTTGTCCTCAAAAAGCAGGAC
1749887 ACATCTTCCA
Statistics
Matches: 219, Mismatches: 32, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
75 6 0.03
76 20 0.09
77 9 0.04
78 25 0.11
79 2 0.01
80 1 0.00
81 21 0.10
83 5 0.02
84 34 0.16
85 26 0.12
86 6 0.03
87 63 0.29
88 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (83 bp):
TTTTGTCCTCAAAAAGCAGGACGCATTTCATTTTCCTTTTTCTTTTGTCCTCAAAGAGCAGGACA
TACTTTATTTTCTCTTTC
Found at i:1749764 original size:43 final size:41
Alignment explanation
Indices: 1749535--1749770 Score: 215
Period size: 42 Copynumber: 5.5 Consensus size: 41
1749525 GGTGGCACTT
* ** * *
1749535 TTTTGTCTTCAAAGAGCAGGACACACTTTATTTTCCTCTCTC
1 TTTTGTCCTCAAAGAGCAGGACGTA-TTTATTTTCCTTTTTC
* * ** * *
1749577 CTTTGTCCTCAAAAAGCAGGACACACTTCA-TTCCCTTATTGCCTC
1 TTTTGTCCTCAAAGAGCAGGACGTA-TTTATTTTCCTT-TT---TC
1749622 TTTTGTCCTCAAAGAGCAGGACGTATTTTATTTTCCTTTTTC
1 TTTTGTCCTCAAAGAGCAGGACGTA-TTTATTTTCCTTTTTC
*
1749664 TTTTGTCCTCAAAGAGCAGGACGTACTTTATTTTCCTCTTTC
1 TTTTGTCCTCAAAGAGCAGGACGTA-TTTATTTTCCTTTTTC
* * *
1749706 TTTTGTCCTCAAAAAGCAGGACGCATTTCGTTTTCCTTTTTTC
1 TTTTGTCCTCAAAGAGCAGGACGTATTT-ATTTTCC-TTTTTC
*
1749749 TTTTATCCTCGAAA-AGCAGGAC
1 TTTTGTCCTC-AAAGAGCAGGAC
1749771 ATACTCTTTT
Statistics
Matches: 165, Mismatches: 21, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
41 8 0.05
42 98 0.59
43 22 0.13
44 3 0.02
45 28 0.17
46 6 0.04
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (41 bp):
TTTTGTCCTCAAAGAGCAGGACGTATTTATTTTCCTTTTTC
Found at i:1750551 original size:20 final size:20
Alignment explanation
Indices: 1750526--1750613 Score: 93
Period size: 20 Copynumber: 4.8 Consensus size: 20
1750516 TTTATCCAGA
*
1750526 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
1750546 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
1750566 TGTATCGAT--A-----CAT
1 TGTATCGATACATTGCTCAT
1750579 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
*
1750599 TTTATCGATACATTG
1 TGTATCGATACATTG
1750614 TATCGACACA
Statistics
Matches: 58, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
13 12 0.21
15 1 0.02
18 1 0.02
20 43 0.74
21 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:1750579 original size:13 final size:13
Alignment explanation
Indices: 1750563--1750626 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 13
1750553 ATACATTGCT
1750563 CATTGTATCGATA
1 CATTGTATCGATA
1750576 CATTGTATCGATA
1 CATTGTATCGATA
1750589 CATTG---C--T-
1 CATTGTATCGATA
*
1750596 CATTTTATCGATA
1 CATTGTATCGATA
*
1750609 CATTGTATCGACA
1 CATTGTATCGATA
1750622 CATTG
1 CATTG
1750627 CTTATTGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
7 4 0.10
8 1 0.02
10 2 0.05
12 1 0.02
13 34 0.81
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1750585 original size:33 final size:33
Alignment explanation
Indices: 1750543--1750645 Score: 179
Period size: 33 Copynumber: 3.1 Consensus size: 33
1750533 ATACATTTTG
1750543 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
*
1750576 CATTGTATCGATACATTGCTCATTTTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
* *
1750609 CATTGTATCGACACATTGCTTATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
1750642 CATT
1 CATT
1750646 TTACAATGTA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:1753043 original size:51 final size:51
Alignment explanation
Indices: 1752988--1753131 Score: 171
Period size: 51 Copynumber: 2.8 Consensus size: 51
1752978 TCATGGTTCC
** *
1752988 ATTTCCAAAACATCAATTTTTCTTAATCGGAGATACTCCAACTCCAATTTT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCAATTTT
* * * ** * *
1753039 ATTTCTAAAGCATCGATTTACCGCAATCGGGGATACTCCAACTCCGATTTT
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCAATTTT
* * *
1753090 ATTTTCAAAACACCAATTTTTCACAATTGGGGATACTCCAAC
1 ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAAC
1753132 CAAGTTATTT
Statistics
Matches: 75, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.33
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACTCCAATTTT
Found at i:1753189 original size:28 final size:28
Alignment explanation
Indices: 1753118--1753191 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
1753108 TTTCACAATT
** **
1753118 GGGGATACTCCAACCAAGTTATTTTATC
1 GGGGATACTCCAACCCCGTTATTTTAGA
*
1753146 GGGGATACTCCAACCCCGTTATTTTCGA
1 GGGGATACTCCAACCCCGTTATTTTAGA
1753174 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
1753192 ACTTTATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTAGA
Found at i:1753256 original size:109 final size:109
Alignment explanation
Indices: 1753106--1753315 Score: 307
Period size: 109 Copynumber: 1.9 Consensus size: 109
1753096 AAAACACCAA
* *
1753106 TTTTTCACAATTGGGGATACTCCAACCAAGTTATTTTATCGGGGATACTCCAACCCCGTTATTTT
1 TTTTTCACAATTGGGGATACTCCAACCAAGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
1753171 CGAGGGGATACTCCAACCCCGACTTTATATT-TAAAAATATTGTT
66 CGAGGGGATACTCCAACCCCGACTTTAT-TTCTAAAAATATTGTT
* ** * *
1753215 TTTTTCATAATTTGGGG-TACTCCAACCCCGTTATTTCATCGGGGATACTCCGATCCCGTTATTT
1 TTTTTCACAA-TTGGGGATACTCCAACCAAGTTATTTCATCGGGGATACTCCAACCCCGTTATTT
* *
1753279 CCGAGGGGATACTCCAACCCTGATTTTATTTCTAAAA
65 CCGAGGGGATACTCCAACCCCGACTTTATTTCTAAAA
1753316 TACCAATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
108 2 0.02
109 82 0.91
110 6 0.07
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.35
Consensus pattern (109 bp):
TTTTTCACAATTGGGGATACTCCAACCAAGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
CGAGGGGATACTCCAACCCCGACTTTATTTCTAAAAATATTGTT
Found at i:1753265 original size:28 final size:28
Alignment explanation
Indices: 1753228--1753298 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
1753218 TTCATAATTT
**
1753228 GGGG-TACTCCAACCCCGTTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCAGA
* * *
1753255 GGGGATACTCCGATCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCAGA
1753283 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
1753299 TGATTTTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 4 0.11
28 32 0.89
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCAGA
Found at i:1753344 original size:51 final size:51
Alignment explanation
Indices: 1753283--1753402 Score: 172
Period size: 51 Copynumber: 2.4 Consensus size: 51
1753273 TTATTTCCGA
* *
1753283 GGGGATACTCCAACCCTGATTTTATTTCTAAAATACCAATTT-TCCACAATC
1 GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCT-CACAATC
1753334 GGGGATACTCCAACTCC-GATTTTATTTCCAAAACACCAATTTCTCACAATC
1 GGGGATACTCCAAC-CCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
**
1753385 GGGGATACTTTAACCCTG
1 GGGGATACTCCAACCCTG
1753403 TTATTTTCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
50 2 0.03
51 57 0.92
52 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
Found at i:1753420 original size:79 final size:78
Alignment explanation
Indices: 1753336--1753553 Score: 267
Period size: 79 Copynumber: 2.7 Consensus size: 78
1753326 CCACAATCGG
* * * **
1753336 GGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGGATACTTTAACCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTT-TCATAATCGGGGATACTCCAACCC
*
1753401 TGTTATTTTCGCG-
65 TGTTATTTTCGAGA
* * * *
1753414 GAGATACTACAACCCCGATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCAACC
1 G-GATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTC-ATAATCGGGGATACTCCAACC
*
1753479 CTGTTATTTTTGAGA
64 CTGTTATTTTCGAGA
* *
1753494 GGATACTCCAACCCCGATTTTTATTTCTAGAACACCGATTTTCCATAATCGGGGATACTC
1 GGATACTCCAACCCCGA-TTTTATTTCCAAAACACCGATTTT-CATAATCGGGGATACTC
1753554 TAGCCCAGTT
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 78 0.66
80 36 0.31
81 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (78 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTCATAATCGGGGATACTCCAACCCT
GTTATTTTCGAGA
Found at i:1756525 original size:3 final size:3
Alignment explanation
Indices: 1756517--1756553 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
1756507 TCATCTTTTT
1756517 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1756554 AGAAAAATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1756949 original size:19 final size:19
Alignment explanation
Indices: 1756920--1756973 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
1756910 TGAAATACGT
1756920 TTTTTGTTGATATATATTGA
1 TTTTTG-TGATATATATTGA
*
1756940 TTTTTGTGATATGATTTTGA
1 TTTTTGTGATAT-ATATTGA
*
1756960 TTTTT-TCATATATA
1 TTTTTGTGATATATA
1756974 CATGTCCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 2 0.07
19 11 0.37
20 17 0.57
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (19 bp):
TTTTTGTGATATATATTGA
Found at i:1758707 original size:3 final size:3
Alignment explanation
Indices: 1758692--1758743 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
1758682 AACCATCAAG
* *
1758692 GAT GAT GAA GAT GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1758740 GAT G
1 GAT G
1758744 TTGACTCGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.35, C:0.02, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:1764708 original size:19 final size:18
Alignment explanation
Indices: 1764662--1764715 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
1764652 TTTCAACAAT
*
1764662 TTGTATCGATACAAATTG
1 TTGTATCGATACAAAGTG
1764680 TAACTGTATCGATACATAAGTG
1 T---TGTATCGATACA-AAGTG
1764702 TTGTATCGATACAA
1 TTGTATCGATACAA
1764716 TGTATCGCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 2 0.06
19 12 0.39
21 12 0.39
22 5 0.16
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (18 bp):
TTGTATCGATACAAAGTG
Found at i:1764785 original size:13 final size:13
Alignment explanation
Indices: 1764767--1764794 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1764757 ATTACTCAAA
1764767 TGTATCGATACAT
1 TGTATCGATACAT
1764780 TGTATCGATACAT
1 TGTATCGATACAT
1764793 TG
1 TG
1764795 ACCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1766093 original size:20 final size:19
Alignment explanation
Indices: 1766039--1766094 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
1766029 AAAACCCTTA
*
1766039 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
1766059 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
1766079 AATGTATCGATACATG
1 AAAGTATCGATACATG
1766095 AAAAGATGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:1766169 original size:19 final size:21
Alignment explanation
Indices: 1766144--1766196 Score: 83
Period size: 19 Copynumber: 2.6 Consensus size: 21
1766134 GTAGCCAAAC
*
1766144 TTGTATCGATACAC-AAAATA
1 TTGTATCGATACACAAAAAAA
1766164 -TGTATCGATACACAAAAAAA
1 TTGTATCGATACACAAAAAAA
1766184 TTGTATCGATACA
1 TTGTATCGATACA
1766197 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (21 bp):
TTGTATCGATACACAAAAAAA
Found at i:1770672 original size:20 final size:20
Alignment explanation
Indices: 1770628--1770681 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
1770618 ATTGATACAC
1770628 TGTATCGATACATACTTGAAT
1 TGTATCGATACATAC-TGAAT
*
1770649 TGTATCGATACATAGC-GCAT
1 TGTATCGATACATA-CTGAAT
1770669 TGTATCGATACAT
1 TGTATCGATACAT
1770682 TGAGCCCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 16 0.52
21 14 0.45
22 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (20 bp):
TGTATCGATACATACTGAAT
Found at i:1781722 original size:40 final size:39
Alignment explanation
Indices: 1781611--1781722 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 39
1781601 TGCATCCTGA
*
1781611 TCAACCCTTCTCATTTGTTGACTTGTAGGTTTTGTCCTAG
1 TCAA-CCTTCTCATTTGTTGACTTATAGGTTTTGTCCTAG
* * * *
1781651 TCAACCTTATCATCTATTGACTTATAGGTTTTGTCCTGG
1 TCAACCTTCTCATTTGTTGACTTATAGGTTTTGTCCTAG
* *
1781690 TTAATCCTTCTCATTTGTTAACTTATAGGTTTT
1 TCAA-CCTTCTCATTTGTTGACTTATAGGTTTT
1781723 ATCTTGGTCA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
39 33 0.54
40 28 0.46
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (39 bp):
TCAACCTTCTCATTTGTTGACTTATAGGTTTTGTCCTAG
Found at i:1781741 original size:40 final size:40
Alignment explanation
Indices: 1781605--1781743 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
1781595 TTGTGTTGCA
* * *
1781605 TCCTGATCAACCCTTCTCATTTGTTGACTTGTAGGTTTTG
1 TCCTGGTCAACTCTTCTCATTTGTTGACTTATAGGTTTTG
* * * *
1781645 TCCTAGTCAAC-CTTATCATCTATTGACTTATAGGTTTTG
1 TCCTGGTCAACTCTTCTCATTTGTTGACTTATAGGTTTTG
* * *
1781684 TCCTGGTTAA-TCCTTCTCATTTGTTAACTTATAGGTTTTA
1 TCCTGGTCAACT-CTTCTCATTTGTTGACTTATAGGTTTTG
* *
1781724 TCTTGGTCAACTTTTCTCAT
1 TCCTGGTCAACTCTTCTCAT
1781744 CCGCTATGTC
Statistics
Matches: 80, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 32 0.40
40 47 0.59
41 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.47
Consensus pattern (40 bp):
TCCTGGTCAACTCTTCTCATTTGTTGACTTATAGGTTTTG
Found at i:1781868 original size:40 final size:40
Alignment explanation
Indices: 1781764--1781880 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 40
1781754 TCGGTCAACT
* * * * *
1781764 TTCTCAATTTTTAGCTTGT-TAGTTTCGTCCCAATCAACCT
1 TTCTCAATTGTTAACTTATCTA-TTTCGTCCTAATCAACCC
* *
1781804 TTCTCAATTGTTAACTTATTTATTTTGTCCTAATCAACCC
1 TTCTCAATTGTTAACTTATCTATTTCGTCCTAATCAACCC
* * * * *
1781844 TTCTCATTTGTTGATTTGTCTATTTCATCCTAATCAA
1 TTCTCAATTGTTAACTTATCTATTTCGTCCTAATCAA
1781881 ACTTTTTAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
40 61 0.97
41 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.48
Consensus pattern (40 bp):
TTCTCAATTGTTAACTTATCTATTTCGTCCTAATCAACCC
Found at i:1781980 original size:77 final size:79
Alignment explanation
Indices: 1781836--1781981 Score: 192
Period size: 77 Copynumber: 1.9 Consensus size: 79
1781826 TTTTGTCCTA
* * * *
1781836 ATCAACCCTTCTCATTTGTTGATTTGTCTATTTCATCCTAATCAAACTTTTTAACTTGTTGACTT
1 ATCAACCCTTCTCATTTGTTGATTAG-CTATTTCATCCCAATCAAACTTTTTAACTTATTAACTT
1781901 GTAGGTTTCATTCCG
65 GTAGGTTTCATTCCG
*
1781916 ATCAACCCTTCTCATTTGTTGACTTAG-T-TTT-ATCCCGATC-AACTTTTTTAACTTATTAACT
1 ATCAACCCTTCTCATTTGTTGA-TTAGCTATTTCATCCCAATCAAAC-TTTTTAACTTATTAACT
1781977 TGTAG
64 TGTAG
1781982 ATTTTATCCT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
76 3 0.05
77 27 0.46
78 3 0.05
79 1 0.02
80 22 0.37
81 3 0.05
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (79 bp):
ATCAACCCTTCTCATTTGTTGATTAGCTATTTCATCCCAATCAAACTTTTTAACTTATTAACTTG
TAGGTTTCATTCCG
Found at i:1782000 original size:77 final size:78
Alignment explanation
Indices: 1781825--1782002 Score: 184
Period size: 77 Copynumber: 2.3 Consensus size: 78
1781815 TAACTTATTT
* * *
1781825 ATTTTGTCCTAATCAACCCTTCTCATTTGTTGATTTGTCTATTTCATCCTAATCAAACTTTTTAA
1 ATTTTATCCT-ATCAACCCTTCTCATTTGTTGATTAG-CTATTTCATCCCAATCAAACTTTTTAA
* *
1781890 CTTGTTGACTTGTAG
64 CTTATTAACTTGTAG
* * * *
1781905 GTTTCATTCCGATCAACCCTTCTCATTTGTTGACTTAG-T-TTT-ATCCCGATC-AACTTTTTTA
1 ATTTTA-TCCTATCAACCCTTCTCATTTGTTGA-TTAGCTATTTCATCCCAATCAAAC-TTTTTA
1781966 ACTTATTAACTTGTAG
63 ACTTATTAACTTGTAG
*
1781982 ATTTTATCCTAGTTAACCCTT
1 ATTTTATCCTA-TCAACCCTT
1782003 TTTATTTATT
Statistics
Matches: 81, Mismatches: 13, Indels: 11
0.77 0.12 0.10
Matches are distributed among these distances:
76 7 0.09
77 39 0.48
78 3 0.04
79 1 0.01
80 25 0.31
81 6 0.07
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.47
Consensus pattern (78 bp):
ATTTTATCCTATCAACCCTTCTCATTTGTTGATTAGCTATTTCATCCCAATCAAACTTTTTAACT
TATTAACTTGTAG
Found at i:1782435 original size:13 final size:13
Alignment explanation
Indices: 1782419--1782448 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1782409 ATACATTGTT
1782419 CATTGTATAGATA
1 CATTGTATAGATA
*
1782432 CATTGTATCGATA
1 CATTGTATAGATA
1782445 CATT
1 CATT
1782449 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATAGATA
Found at i:1782524 original size:33 final size:33
Alignment explanation
Indices: 1782482--1782546 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
1782472 TACATTTTGC
*
1782482 ATTGTATCGATACATTGCTTATTATATCGATAT
1 ATTGTATCGATACATTGCTAATTATATCGATAT
* *
1782515 ATTGTATCGATCCATTGCTAATTGTATCGATA
1 ATTGTATCGATACATTGCTAATTATATCGATA
1782547 CATTTTATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (33 bp):
ATTGTATCGATACATTGCTAATTATATCGATAT
Found at i:1784894 original size:51 final size:51
Alignment explanation
Indices: 1784839--1785001 Score: 202
Period size: 51 Copynumber: 3.2 Consensus size: 51
1784829 TCCCGGTTCC
** **
1784839 ATTTCCAAAACGTCAATTTTTCTTAATCGGGGATACTCCAACCTCGATTTT
1 ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGATTTT
* *
1784890 ATTTCTAAAATACCAATTTTTCACAATCGGGGATACTCCAA-CTCCGATTTT
1 ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCT-CGATTTT
* * * **
1784941 AGTTCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGACCTT
1 ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGATTTT
*
1784992 ATTTCTAAAA
1 ATTTCCAAAA
1785002 TATTGATTTC
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
50 2 0.02
51 92 0.97
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.32
Consensus pattern (51 bp):
ATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCTCGATTTT
Found at i:1785011 original size:51 final size:51
Alignment explanation
Indices: 1784863--1785036 Score: 213
Period size: 51 Copynumber: 3.4 Consensus size: 51
1784853 AATTTTTCTT
* *
1784863 AATCGGGGATACTCCAACCTCGATTTTATTTCTAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCAC
* * * *
1784914 AATCGGGGATACTCCAACTCCGATTTTAGTTCCAAAACACCAATTTCTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCAC
** *** *
1784965 AATCGGGGATACTCCAACCCCGACCTTATTTCTAAAATATTGATTTCTCAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCAC
** *
1785016 AATAAGGCATACTCCAACCCC
1 AATCGGGGATACTCCAACCCC
1785037 ATTATTTTCA
Statistics
Matches: 104, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.30
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTCTCAC
Found at i:1797546 original size:1 final size:1
Alignment explanation
Indices: 1797542--1797642 Score: 76
Period size: 1 Copynumber: 101.0 Consensus size: 1
1797532 ATTCTTTTTC
* * * * * * * *
1797542 AAAAAAAACAAAAAACAACAAAAAAAACAAAAAAAAATAGAAAAAACAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
1797607 CAAAAAAACAAAACAAAGAAAAAAGAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1797643 TCTACTTAAG
Statistics
Matches: 72, Mismatches: 28, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.86, C:0.09, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:1797555 original size:9 final size:9
Alignment explanation
Indices: 1797541--1797641 Score: 107
Period size: 9 Copynumber: 11.0 Consensus size: 9
1797531 CATTCTTTTT
1797541 CAAAAAAAA
1 CAAAAAAAA
1797550 CAAAAAACAA
1 CAAAAAA-AA
1797560 CAAAAAAAA
1 CAAAAAAAA
1797569 CAAAAAAAA
1 CAAAAAAAA
1797578 -ATAGAAAAAA
1 CA-A-AAAAAA
1797588 C-AAAAAAA
1 CAAAAAAAA
1797596 CAAAAAAAA
1 CAAAAAAAA
*
1797605 AACAAAAAAA
1 CA-AAAAAAA
*
1797615 CAAAACAAA
1 CAAAAAAAA
* *
1797624 GAAAAAAGA
1 CAAAAAAAA
*
1797633 GAAAAAAAA
1 CAAAAAAAA
1797642 ATCTACTTAA
Statistics
Matches: 79, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
8 8 0.10
9 48 0.61
10 23 0.29
ACGTcount: A:0.85, C:0.10, G:0.04, T:0.01
Consensus pattern (9 bp):
CAAAAAAAA
Found at i:1797565 original size:19 final size:19
Alignment explanation
Indices: 1797541--1797630 Score: 105
Period size: 19 Copynumber: 4.8 Consensus size: 19
1797531 CATTCTTTTT
1797541 CAAAAAAAACAAAAAACAA
1 CAAAAAAAACAAAAAACAA
*
1797560 CAAAAAAAACAAAAAAAAA
1 CAAAAAAAACAAAAAACAA
* *
1797579 TAGAAAAAACAAAAAAACAA
1 CAAAAAAAAC-AAAAAACAA
1797599 -AAAAAAAAC-AAAAA-AA
1 CAAAAAAAACAAAAAACAA
* *
1797615 CAAAACAAAGAAAAAA
1 CAAAAAAAACAAAAAA
1797631 GAGAAAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
16 2 0.03
17 12 0.20
18 5 0.08
19 34 0.56
20 8 0.13
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.01
Consensus pattern (19 bp):
CAAAAAAAACAAAAAACAA
Found at i:1797638 original size:19 final size:16
Alignment explanation
Indices: 1797541--1797630 Score: 85
Period size: 16 Copynumber: 5.6 Consensus size: 16
1797531 CATTCTTTTT
*
1797541 CAAAAAAAACAAAAAA
1 CAAAAAAAAAAAAAAA
* *
1797557 CAACAAAAAAAACAAA
1 CAAAAAAAAAAAAAAA
* *
1797573 -AAAAAATAGAAAAAA
1 CAAAAAAAAAAAAAAA
1797588 CAAAAAAACAAAAAAAA
1 CAAAAAAA-AAAAAAAA
* *
1797605 -AACAAAAAAACAAAA
1 CAAAAAAAAAAAAAAA
1797620 CAAAGAAAAAA
1 CAAA-AAAAAA
1797631 GAGAAAAAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
15 18 0.31
16 27 0.47
17 13 0.22
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.01
Consensus pattern (16 bp):
CAAAAAAAAAAAAAAA
Found at i:1798773 original size:55 final size:54
Alignment explanation
Indices: 1798712--1799114 Score: 464
Period size: 55 Copynumber: 7.2 Consensus size: 54
1798702 TTCACCCTTT
* * * *
1798712 AGTCCTCAAAGAGTAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCA-TTTTC
* * * * *
1798767 TGTCCTCAAAGAGCAGGACGCCTTTCAAAACGCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCA-TTTTC
* * * * *
1798822 AGTCCTCAAAGAGCAGGACACATTTCAAAGCCTACACAAGTTGGTGGCATTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCA-TTTTC
*
1798877 AGTTCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCATTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCATTTTC
* * *
1798931 TAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACAAAAGTTGGTGACATTTTCC
1 -AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCATTTT-C
*
1798987 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTAGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCATTTT-C
* * * * *
1799042 AATCCTCAAAGAGCAGGATGCTTTCACCTTTCAAAGCCCACATAAGTTAGTGGCACTTCTC
1 AGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACAAAAGTTGGTGGCA-TTTTC
*
1799103 AATCCTCAAAGA
1 AGTCCTCAAAGA
1799115 AGAGGGCGCT
Statistics
Matches: 307, Mismatches: 32, Indels: 12
0.87 0.09 0.03
Matches are distributed among these distances:
54 4 0.01
55 257 0.84
56 1 0.00
61 42 0.14
62 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACAAAAGTTGGTGGCATTTTC
Found at i:1798774 original size:94 final size:97
Alignment explanation
Indices: 1798596--1798787 Score: 277
Period size: 94 Copynumber: 2.0 Consensus size: 97
1798586 ATCTAAACTT
*
1798596 TCTCCTTTCACTTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTG
1 TCTCCTTTCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCC---TAAAGCCCACACAAGTTG
1798661 GTGGCACCTTCTAGCCCTCAAAGAGCAGGACGCTC
63 GTGGCACCTTCTAGCCCTCAAAGAGCAGGACGCTC
*
1798696 TCTCCTTTCACCCTTT-AGTCCTCAAAGAGTAGGATGCC-TTT-C-AAAGCCCACACAAGTTGGT
1 TCTCCTTTCA-CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTAAAGCCCACACAAGTTGGT
*
1798757 GGCACCTTTCT-GTCCTCAAAGAGCAGGACGC
65 GGCACC-TTCTAGCCCTCAAAGAGCAGGACGC
1798788 CTTTCAAAAC
Statistics
Matches: 87, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
94 44 0.51
95 4 0.05
98 1 0.01
99 3 0.03
100 31 0.36
101 4 0.05
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (97 bp):
TCTCCTTTCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTAAAGCCCACACAAGTTGGTG
GCACCTTCTAGCCCTCAAAGAGCAGGACGCTC
Found at i:1798930 original size:28 final size:28
Alignment explanation
Indices: 1798899--1799040 Score: 78
Period size: 28 Copynumber: 5.1 Consensus size: 28
1798889 GCAGGACGCC
1798899 TTTCAAAGCCCACAAAAGTTGGTGGCAT
1 TTTCAAAGCCCACAAAAGTTGGTGGCAT
* * * ** *
1798927 TTTC-TAGTCCTCAAAGAGCAGGAT-GCCT
1 TTTCAAAGCCCACAAA-AGTTGG-TGGCAT
*
1798955 TTT-AAAGCCCACAAAAGTTGGTGACAT
1 TTTCAAAGCCCACAAAAGTTGGTGGCAT
* * * ** ** *
1798982 TTTC-CAGTCCTCAAAGAGCAGGACGC-C
1 TTTCAAAGCCCACAAA-AGTTGGTGGCAT
*
1799009 TTTCAAAGCCCACAAAAGTTAGTGGCAT
1 TTTCAAAGCCCACAAAAGTTGGTGGCAT
1799037 TTTC
1 TTTC
1799041 CAATCCTCAA
Statistics
Matches: 75, Mismatches: 31, Indels: 16
0.61 0.25 0.13
Matches are distributed among these distances:
26 1 0.01
27 34 0.45
28 39 0.52
29 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (28 bp):
TTTCAAAGCCCACAAAAGTTGGTGGCAT
Found at i:1798996 original size:27 final size:26
Alignment explanation
Indices: 1798911--1798996 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 26
1798901 TCAAAGCCCA
*
1798911 CAAAAGTTGGTGGCATTTTCTAGTCCT
1 CAAAAGTTGGT-GCATTTTCAAGTCCT
** * * * *
1798938 CAAAGAGCAGGATGCCTTTTAAAGCCCA
1 CAAA-AGTTGG-TGCATTTTCAAGTCCT
*
1798966 CAAAAGTTGGTGACATTTTCCAGTCCT
1 CAAAAGTTGGTG-CATTTTCAAGTCCT
1798993 CAAA
1 CAAA
1798997 GAGCAGGACG
Statistics
Matches: 42, Mismatches: 14, Indels: 6
0.68 0.23 0.10
Matches are distributed among these distances:
26 2 0.05
27 21 0.50
28 18 0.43
29 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
CAAAAGTTGGTGCATTTTCAAGTCCT
Found at i:1799197 original size:210 final size:210
Alignment explanation
Indices: 1798931--1799322 Score: 642
Period size: 210 Copynumber: 1.9 Consensus size: 210
1798921 TGGCATTTTC
* *
1798931 TAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACAAAAGTTGGTGACATTTTCCAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGTTGGTGACATTTTCCAATCCTCAA
*
1798996 AGAGCAGGACGCCTTTCAAAGCCCACAAAAGTT-AGTGGCATTTTCCAATCCTCAAAGAGCAGGA
66 AGAGCAGGACACCTTTCAAAGCCCACAAAAGTTGA-TGGCATTTTCCAATCCTCAAAGAGCAGGA
* *
1799060 TGCTTTCACCTTTCAAAGCCCACATAAGTTAGTGGCACTTCTCAATCCTCAAAGAAGAGGGCGCT
130 TGCTTTCACCTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAAGAGGGCGCT
1799125 CTCTCCTTTCGCCCTT
195 CTCTCCTTTCGCCCTT
* *
1799141 TAGTCCTCAAAGAGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGACATTTTCCAATCCTCAA
1 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGTTGGTGACATTTTCCAATCCTCAA
* * * *
1799206 AGAGCAGGACACCTTTCAAAGCCCACACAAGTTGATGGCATTTTTCAGTCCTCAAAGAGTAGGAT
66 AGAGCAGGACACCTTTCAAAGCCCACAAAAGTTGATGGCATTTTCCAATCCTCAAAGAGCAGGAT
* * *
1799271 GCTTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAA
131 GCTTTCACCTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAA
1799323 AAGCAGGACA
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
210 166 0.99
211 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (210 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACAAAAGTTGGTGACATTTTCCAATCCTCAA
AGAGCAGGACACCTTTCAAAGCCCACAAAAGTTGATGGCATTTTCCAATCCTCAAAGAGCAGGAT
GCTTTCACCTTTCAAAGCCCACACAAGTTAGTGGCACTTCCCAATCCTCAAAGAAGAGGGCGCTC
TCTCCTTTCGCCCTT
Found at i:1799408 original size:122 final size:116
Alignment explanation
Indices: 1799163--1799452 Score: 336
Period size: 122 Copynumber: 2.5 Consensus size: 116
1799153 AGTAGGACGC
* * *
1799163 CTTTT-AAAGCCCACACAAGTTGGTGACATTTTCCAATCCTCAAAGAGCAGGACACCTTTCAAAG
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
* * * *
1799227 CCCACACAAGTTGATGGCATTTTTCAGTCCTCAAAGAGTAGGATGCTTTCT
66 CCCACACAAGTTGATGGCACTTCTCAGTCCTCAAAGAGAAGCATGCTTTCT
* * *
1799278 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAAAGCAGGACACCTTCTCATT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACACCTT-TC---
* *
1799343 TTAAAGCCCATACAAGTTGGTGGCAGCTTCT-AGTCCTCAAAGAGCAAGACAT-CTTT-T
62 --AAAGCCCACACAAGTTGATGGCA-CTTCTCAGTCCTCAAAGAG-AAG-CATGCTTTCT
* **
1799400 CTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGA
1799453 TGCCTTTTCC
Statistics
Matches: 147, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
115 4 0.03
116 48 0.33
117 2 0.01
122 82 0.56
123 9 0.06
124 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (116 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
CCCACACAAGTTGATGGCACTTCTCAGTCCTCAAAGAGAAGCATGCTTTCT
Found at i:1799460 original size:61 final size:61
Alignment explanation
Indices: 1799163--1799467 Score: 299
Period size: 61 Copynumber: 5.1 Consensus size: 61
1799153 AGTAGGACGC
* * * *
1799163 CTTTT-AAAGCCCACACAAGTTGGTGACATTTTCCAATCCTCAAAGAGCAGGACA-C----
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* * * **
1799218 C-TTTCAAAGCCCACACAAGTTGATGGCA-TTTTTCAGTCCTCAAAGAGTAGGA-TGCTTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCT-AGTCCTCAAAGAGCAGGACACCTTT-T
* * * * *
1799278 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAAAGCAGGACACCTTCT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* * *
1799339 CATTTT-AAAGCCCATACAAGTTGGTGGCAGC-TTCTAGTCCTCAAAGAGCAAGACATCTTTT
1 C-TTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* * **
1799400 CTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
1799461 CCTTTTC
1 -CTTTTC
1799468 TCCTTTGTTC
Statistics
Matches: 203, Mismatches: 31, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
54 6 0.03
55 39 0.19
60 6 0.03
61 137 0.67
62 15 0.07
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (61 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
Found at i:1800163 original size:13 final size:13
Alignment explanation
Indices: 1800145--1800174 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
1800135 ATACATTTTG
1800145 CATTGTATCGATA
1 CATTGTATCGATA
1800158 CATTGTATCGATA
1 CATTGTATCGATA
1800171 CATT
1 CATT
1800175 CAAGCATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:1802494 original size:51 final size:51
Alignment explanation
Indices: 1802447--1802577 Score: 156
Period size: 51 Copynumber: 2.6 Consensus size: 51
1802437 TTTAAAACGT
** * * *
1802447 CAATTTTTCTTAATCGGTGATACTTCAAC-CTCGATTTTATTTCTAAAATAC
1 CAATTTTTCACAATCGGGGATACTCCAACTCTC-ATTTTATTTCTAAAACAC
* *
1802498 CAATTTTTCACAATCGGGGATACTCCAACTCTCATTTTAGTTCCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACTCTCATTTTATTTCTAAAACAC
* * *
1802549 GAATTTCTCACAATCAGGGATACTCCAAC
1 CAATTTTTCACAATCGGGGATACTCCAAC
1802578 CCCATTATTT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
51 66 0.96
52 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACTCTCATTTTATTTCTAAAACAC
Found at i:1802696 original size:79 final size:80
Alignment explanation
Indices: 1802513--1802817 Score: 282
Period size: 79 Copynumber: 3.9 Consensus size: 80
1802503 TTTCACAATC
* * *
1802513 GGGGATACTCCAACTCTC-ATTTTAGTTCCAAAACA-CGAATTTCTCACAATCAGGGATACTCCA
1 GGGGATACTCCAAC-CCCAATTTTATTTCCAAAACATCG-ATTTCTCATAATCAGGGATACTCCA
1802576 ACCCCATTA-TTTC-CGA
64 ACCCCATTATTTTCAC-A
**** * * * ** *
1802592 GGGGATACTCCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATTGGGGATACTCTAAC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCGATTTCTCATAATCAGGGATACTCCAAC
1802657 CCCATTATTTTCACA
66 CCCATTATTTTCACA
* * *** * *
1802672 -GGGATACTCCAATCTCAATTTTATTTTTGAAACATCTATTT-TCTATAATCAAGGATACTCCAA
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCGATTTCTC-ATAATCAGGGATACTCCAA
**
1802735 CCCTGTTATTTTCA-A
65 CCCCATTATTTTCACA
* * * * *
1802750 GGGGATACTCCAACCCCAATTTTACTTCCAAAATACCGATTTTTCATAATCAGGGATACTCCAGC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCGATTTCTCATAATCAGGGATACTCCAAC
1802815 CCC
66 CCC
1802818 GTTGTTATCT
Statistics
Matches: 178, Mismatches: 41, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
78 5 0.03
79 164 0.92
80 8 0.04
81 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (80 bp):
GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCGATTTCTCATAATCAGGGATACTCCAAC
CCCATTATTTTCACA
Found at i:1804161 original size:13 final size:13
Alignment explanation
Indices: 1804143--1804168 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1804133 TACACCAAGT
1804143 ATGTATCGATACA
1 ATGTATCGATACA
1804156 ATGTATCGATACA
1 ATGTATCGATACA
1804169 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1804166 original size:32 final size:33
Alignment explanation
Indices: 1804125--1804188 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1804115 TAGCCAAACT
* **
1804125 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1804157 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1804189 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1809125 original size:13 final size:13
Alignment explanation
Indices: 1809107--1809132 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1809097 TACACCAAGT
1809107 ATGTATCGATACA
1 ATGTATCGATACA
1809120 ATGTATCGATACA
1 ATGTATCGATACA
1809133 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1809130 original size:32 final size:33
Alignment explanation
Indices: 1809089--1809152 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1809079 TAGCCAAACT
* **
1809089 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1809121 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1809153 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1810307 original size:63 final size:64
Alignment explanation
Indices: 1810191--1810320 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 64
1810181 GCCCTGATTG
* ** *
1810191 ACCCTCTAGACTTAGGTTACATATTAGTTATCTTTGCTTGACTATATCTATTTT-CTGTTGGTCA
1 ACCCTCTAGACCTAGGTTACATATTAGTTATCTTTGCTTGACTATATAAATTTTGC-CTTGGTCA
* *
1810255 ACCCTCTAGGCCTAGGTTACAT-TCTAG-TCTCTTTGCTTGACTATATAAATTTTGCCTTGGTCA
1 ACCCTCTAGACCTAGGTTACATAT-TAGTTATCTTTGCTTGACTATATAAATTTTGCCTTGGTCA
1810318 ACC
1 ACC
1810321 TTTTAGACTT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
63 34 0.59
64 24 0.41
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.42
Consensus pattern (64 bp):
ACCCTCTAGACCTAGGTTACATATTAGTTATCTTTGCTTGACTATATAAATTTTGCCTTGGTCA
Found at i:1811469 original size:15 final size:15
Alignment explanation
Indices: 1811449--1811482 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1811439 TCTATCAACT
*
1811449 TTTTTTTTTGTAAAA
1 TTTTTTCTTGTAAAA
*
1811464 TTTTTTCTTGTATAA
1 TTTTTTCTTGTAAAA
1811479 TTTT
1 TTTT
1811483 ACGAGTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (15 bp):
TTTTTTCTTGTAAAA
Found at i:1812192 original size:19 final size:20
Alignment explanation
Indices: 1812168--1812211 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1812158 AAAATATATT
1812168 ATTTTT-TGAAATGATGTTG
1 ATTTTTGTGAAATGATGTTG
* *
1812187 ATTTTTGTGATATGATTTTG
1 ATTTTTGTGAAATGATGTTG
1812207 ATTTT
1 ATTTT
1812212 GTCATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (20 bp):
ATTTTTGTGAAATGATGTTG
Found at i:1812213 original size:19 final size:19
Alignment explanation
Indices: 1812168--1812218 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
1812158 AAAATATATT
* *
1812168 ATTTTTTGAAATGATGTTG
1 ATTTTGTGATATGATGTTG
*
1812187 ATTTTTGTGATATGATTTTG
1 A-TTTTGTGATATGATGTTG
*
1812207 ATTTTGTCATAT
1 ATTTTGTGATAT
1812219 ATATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.24, C:0.02, G:0.18, T:0.57
Consensus pattern (19 bp):
ATTTTGTGATATGATGTTG
Found at i:1814522 original size:82 final size:83
Alignment explanation
Indices: 1814378--1814540 Score: 258
Period size: 82 Copynumber: 2.0 Consensus size: 83
1814368 TAAAATTTTA
* *
1814378 AAATAATGAATTCCAAAGTATTTAATTTGAAAGTATAAAAATAAAAAATCCTAATCTCGGGAGAC
1 AAATAATGAATTCCAAAATATTTAATTT-AAAGTATAAAAATAAAAAATCCTAATATCGGGAGA-
1814443 TT-TATGAAAAATGCCTATG
64 TTCTATGAAAAATGCCTATG
* *
1814462 AAATAATGAATTCCAAAATATTTAATTT-TAGTATAAAAATAAAAAATCCTAATATTGGGAGATT
1 AAATAATGAATTCCAAAATATTTAATTTAAAGTATAAAAATAAAAAATCCTAATATCGGGAGATT
1814526 CTATGAAAAATGCCT
66 CTATGAAAAATGCCT
1814541 TACGAATTGA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
81 2 0.03
82 45 0.61
84 27 0.36
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (83 bp):
AAATAATGAATTCCAAAATATTTAATTTAAAGTATAAAAATAAAAAATCCTAATATCGGGAGATT
CTATGAAAAATGCCTATG
Found at i:1820690 original size:24 final size:24
Alignment explanation
Indices: 1820644--1820693 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1820634 TTTGGTAAGA
*
1820644 TTGATTTTCATTTAACTTGATAAT
1 TTGATTTTCATTTAACTTAATAAT
*
1820668 TTGATTTTTATTTATA-TTAATAAT
1 TTGATTTTCATTTA-ACTTAATAAT
1820692 TT
1 TT
1820694 TGCTTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (24 bp):
TTGATTTTCATTTAACTTAATAAT
Found at i:1824691 original size:115 final size:116
Alignment explanation
Indices: 1824514--1824729 Score: 272
Period size: 115 Copynumber: 1.9 Consensus size: 116
1824504 TTTTACGTCG
** ** * * * * *
1824514 AAGGTATCCCCTAAGGGCATTTTTGTAATTTTTTTCGATCCGATTCTTAGGTTGTCACTAGGTCT
1 AAGGTATCCCCTAAAAGCATTTTTGTAATTTTTTTAAAACCGAGTCCTAGGTTGCCACTAGGTCC
** * *
1824579 TTTTTTATGCCAAAGGTGGGTATTTAGGATAGGTTCGCCCCATCCATGTCA
66 GCTTTTATGCCAAAGGTGAGTATCTAGGATAGGTTCGCCCCATCCATGTCA
* *
1824630 AAGGTATCCCTTAAAAGCATTTTTGTAA-TTTTTTAAAACCGAGTCCTAGGTTGCCATTAGGTCC
1 AAGGTATCCCCTAAAAGCATTTTTGTAATTTTTTTAAAACCGAGTCCTAGGTTGCCACTAGGTCC
* *
1824694 GCTTTTATGCCACATGTGAGTATCTAGGATAGGTTC
66 GCTTTTATGCCAAAGGTGAGTATCTAGGATAGGTTC
1824730 ACCCATTCTA
Statistics
Matches: 83, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
115 58 0.70
116 25 0.30
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.38
Consensus pattern (116 bp):
AAGGTATCCCCTAAAAGCATTTTTGTAATTTTTTTAAAACCGAGTCCTAGGTTGCCACTAGGTCC
GCTTTTATGCCAAAGGTGAGTATCTAGGATAGGTTCGCCCCATCCATGTCA
Found at i:1826765 original size:155 final size:154
Alignment explanation
Indices: 1826388--1827072 Score: 594
Period size: 155 Copynumber: 4.5 Consensus size: 154
1826378 AGGTTCAAAG
* * * * * * * *
1826388 AAAATTACAAAATTACCTCTA-AGGATATCTTCGACGTAGAAGTACCCGATATCCCTCAAGGA-C
1 AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGACC
* * * * * * *
1826451 TTAAAAGGATCATA-AAGAGATAAACCTATCCTAACTACCCATCTTCGGCATAAAAGCGAACCCG
66 TAAAAAGGAT-ATAGAAGGGGTGAACCTATCCTAA-TACCCACCTTTGGCATAAAAGCGGACCCG
* * * *
1826515 GTGATAACCTAAGACTCCGTTCTAG-
129 ATGACAACCTAGGACTCGGTTCTAGA
** * ** * * * * * *
1826540 AAAATTATTAAAATGCCGTTAGTGAATACTTTCGACGTAGAAGTACCCGATACCCCTAAAAGACC
1 AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGACC
* * *
1826605 TAAAAAGGATTTAGAAGGGGTGAACTTATCCTAGATCCCCACCTTTGGCATAAAAGCGGACCCGA
66 TAAAAAGGATATAGAAGGGGTGAACCTATCCTA-ATACCCACCTTTGGCATAAAAGCGGACCCGA
1826670 TGACAACCTAGGACTCGGTTCTAGA
130 TGACAACCTAGGACTCGGTTCTAGA
** * * * * *
1826695 AAAATTATGAAAATACCCCTTGGGGATACTTTTGACGTAGAAGTATCTGATACCCCTAAAGGACC
1 AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGACC
* * ** * *
1826760 TAAAAACGATATGGTTGGGGTGAACCTATCCTAAATACCCACTTTTGGCATAAAAGCGGACCCAA
66 TAAAAAGGATATAGAAGGGGTGAACCTATCCT-AATACCCACCTTTGGCATAAAAGCGGACCCGA
* * * *
1826825 TGACAACTTAGGAATTGGTTCTAAA
130 TGACAACCTAGGACTCGGTTCTAGA
**** * * *
1826850 AAAATTACAAAAATGTTGCTAGGAGATACCTTCGACATAAAAATACCTGATACCCCTAAA-GA-C
1 AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGACC
** * * * *
1826913 TAAAAAGGATCATA-AAAAGATGAACCTATCCTAACTACCCTCCTTTGGCATGAAAGCAGACCCG
66 TAAAAAGGAT-ATAGAAGGGGTGAACCTATCCTAA-TACCCACCTTTGGCATAAAAGCGGACCCG
* **
1826977 ATGACGACCTAGGACTCAATTCTA-A
129 ATGACAACCTAGGACTCGGTTCTAGA
* * * * * * *
1827002 AAAATTACAAAAATACCTCTAAGGGAGACCTTTGACGTAAAAGTATCTGATACTCCTAATGGACA
1 AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGAC-
1827067 CTAAAA
65 CTAAAA
1827073 TGATAACTAA
Statistics
Matches: 426, Mismatches: 96, Indels: 19
0.79 0.18 0.04
Matches are distributed among these distances:
152 65 0.15
153 103 0.24
154 75 0.18
155 182 0.43
156 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (154 bp):
AAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAAAAGTACCTGATACCCCTAAAGGACC
TAAAAAGGATATAGAAGGGGTGAACCTATCCTAATACCCACCTTTGGCATAAAAGCGGACCCGAT
GACAACCTAGGACTCGGTTCTAGA
Found at i:1829500 original size:164 final size:164
Alignment explanation
Indices: 1829192--1829506 Score: 391
Period size: 164 Copynumber: 1.9 Consensus size: 164
1829182 AAAACTCATG
*
1829192 AAAATGAATAAAATTTTAAAAAATGAATTAATATGAAATAAATGATAATACTAGATGAATTTTAA
1 AAAATGAATAAAATTTTAAAAAATGAATTAATATGAAATAAATAATAATACTAGATGAATTTTAA
* * * * *
1829257 AAATTTAAAACCAAGAAAAATCCCCTCAAAAAAATTTTCGGAGTAAAAAATACCGTATTTCAAAA
66 AAAATAAAAACCAAGAAAAATCCCCTCAAAAAAATTTACAGAGTAAAAAACACCGTATTTCAAAA
*
1829322 AGAGAAAGTTTCAAGGAAAAAATAAAAAAGAATA
131 AGAGAAAATTTCAAGGAAAAAATAAAAAAGAATA
* * * * * * *
1829356 AAAATGTATAAATTTTTGAAAAATTAATTAATATGATATAAATAATAATATTTGATGAATTTTAA
1 AAAATGAATAAAATTTTAAAAAATGAATTAATATGAAATAAATAATAATACTAGATGAATTTTAA
* ** * * ** *
1829421 AAAATAAAAACCGAGAAAAAT-CCCTTGAAAAAATTTACAGAGTAGAAAGCATTGTATTTTAGAA
66 AAAATAAAAACCAAGAAAAATCCCCTCAAAAAAATTTACAGAGTAAAAAACACCGTATTTCA-AA
*
1829485 AA-AGAAAAATTTCAAGGCAAAA
130 AAGAG-AAAATTTCAAGGAAAAA
1829507 TTCAAAAGCT
Statistics
Matches: 126, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
163 32 0.25
164 94 0.75
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (164 bp):
AAAATGAATAAAATTTTAAAAAATGAATTAATATGAAATAAATAATAATACTAGATGAATTTTAA
AAAATAAAAACCAAGAAAAATCCCCTCAAAAAAATTTACAGAGTAAAAAACACCGTATTTCAAAA
AGAGAAAATTTCAAGGAAAAAATAAAAAAGAATA
Found at i:1830219 original size:43 final size:42
Alignment explanation
Indices: 1830171--1830263 Score: 123
Period size: 43 Copynumber: 2.2 Consensus size: 42
1830161 TGGATAAAGG
* * * *
1830171 AGTCTCTCAAGTCTTAGCCGACGGGTAGAGAAAAGATGAAGAA
1 AGTCTCCCAAGACTGAGCCGACGGGTAGACAAAAGATGAAG-A
**
1830214 AGTCTCCCGGGACTGAGCCGACGGGTAGACAAAAGATGAAGA
1 AGTCTCCCAAGACTGAGCCGACGGGTAGACAAAAGATGAAGA
1830256 AGTCTCCC
1 AGTCTCCC
1830264 GAGTCTAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 9 0.20
43 35 0.80
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (42 bp):
AGTCTCCCAAGACTGAGCCGACGGGTAGACAAAAGATGAAGA
Found at i:1830278 original size:42 final size:43
Alignment explanation
Indices: 1830188--1830280 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
1830178 CAAGTCTTAG
* * * *
1830188 CCGACGGGTAGAGAAAAGATGAAGAAAGTCTCCCGGGACTGAG
1 CCGACGGGTAGACAAAAGATGAAGAAAGTCTCCCGAGACTAAA
*
1830231 CCGACGGGTAGACAAAAGATGAAG-AAGTCTCCCGAGTCTAAA
1 CCGACGGGTAGACAAAAGATGAAGAAAGTCTCCCGAGACTAAA
*
1830273 TCGACGGG
1 CCGACGGG
1830281 CAAACAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 21 0.48
43 23 0.52
ACGTcount: A:0.34, C:0.20, G:0.32, T:0.13
Consensus pattern (43 bp):
CCGACGGGTAGACAAAAGATGAAGAAAGTCTCCCGAGACTAAA
Found at i:1830288 original size:42 final size:43
Alignment explanation
Indices: 1830201--1830288 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 43
1830191 ACGGGTAGAG
* * * * *
1830201 AAAAGATGAAGAAAGTCTCCCGGGACTGAGCCGACGGGTAGAC
1 AAAAGATGAAGAAAGTCTCCCGAGACTAAACCGACGGGCAAAC
* *
1830244 AAAAGATGAAG-AAGTCTCCCGAGTCTAAATCGACGGGCAAAC
1 AAAAGATGAAGAAAGTCTCCCGAGACTAAACCGACGGGCAAAC
1830286 AAA
1 AAA
1830289 GGGCTTTAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 27 0.71
43 11 0.29
ACGTcount: A:0.40, C:0.20, G:0.27, T:0.12
Consensus pattern (43 bp):
AAAAGATGAAGAAAGTCTCCCGAGACTAAACCGACGGGCAAAC
Found at i:1830406 original size:42 final size:42
Alignment explanation
Indices: 1830337--1830532 Score: 167
Period size: 42 Copynumber: 4.7 Consensus size: 42
1830327 TAGGCAAACT
* * * * * *
1830337 AAAGGTGAAAAAGTATCTCGAGTCTAAGTCGACAAGCACAAG
1 AAAGATGAAAAAGTCTCTTGGGTCTAAGTCGACAAGCAGATG
* * *
1830379 AAAGATGAAAAAGTCTCTTGGGACTAAGCCGACGAGCAGATG
1 AAAGATGAAAAAGTCTCTTGGGTCTAAGTCGACAAGCAGATG
* * * * *
1830421 AAAGATGAAGAAGTCTCTTGGGTTTGAGTCAACAGGCAGATG
1 AAAGATGAAAAAGTCTCTTGGGTCTAAGTCGACAAGCAGATG
*** * * * *
1830463 AAAGATGAAAAAGTCTCCCAGGTCTGAGCCGACGAGCAGAGG
1 AAAGATGAAAAAGTCTCTTGGGTCTAAGTCGACAAGCAGATG
* * * *
1830505 AAAGATGAAGAAGTTTCCTAGGTCTAAG
1 AAAGATGAAAAAGTCTCTTGGGTCTAAG
1830533 CTGACAGGCA
Statistics
Matches: 123, Mismatches: 31, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 123 1.00
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.18
Consensus pattern (42 bp):
AAAGATGAAAAAGTCTCTTGGGTCTAAGTCGACAAGCAGATG
Found at i:1830540 original size:84 final size:84
Alignment explanation
Indices: 1830378--1830748 Score: 304
Period size: 84 Copynumber: 4.4 Consensus size: 84
1830368 ACAAGCACAA
** * * * * *
1830378 GAAAGATGAAAAAGTCTCTTGGGACTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTTGGG
1 GAAAGATGAAAAAGTCTCCCGAGTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTTTCCTAGG
* * *
1830443 TTTGAG-TCAACAGGCAGAT
66 TCTAAGCT-GACAGGCAGAT
* *
1830462 GAAAGATGAAAAAGTCTCCC-AGGTCTGAGCCGACGAGCAGAGGAAAGATGAAGAAGTTTCCTAG
1 GAAAGATGAAAAAGTCTCCCGA-GTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTTTCCTAG
*
1830526 GTCTAAGCTGACAGGCAGAC
65 GTCTAAGCTGACAGGCAGAT
* * * * * ** *
1830546 GATTA-ATGAAAATGTCTCTCGAGTCTAAGCCGAAGAGCAGATTATGGATGAA-AGAGTTTCCCA
1 GA-AAGATGAAAAAGTCTCCCGAGTCTAAGCCGACGAGCAGATGAAAGATGAAGA-AGTTTCCTA
* *
1830609 AGTCTAAGCTGACGGGCAGAT
64 GGTCTAAGCTGACAGGCAGAT
** * * * * *
1830630 GATGGATGAAAAAGTCTCCCGAGTCTAAGTCGATGAGCAGACAGAAA-ATGAAGAAAGTCTCCCG
1 GAAAGATGAAAAAGTCTCCCGAGTCTAAGCCGACGAGCAGA-TGAAAGATGAAG-AAGT-TTCCT
* * * *
1830694 AGAT-TGAGTTGACAGGCAAAT
63 AGGTCTAAGCTGACAGGCAGAT
* *
1830715 GAAAGATGAAGAAAGTCTCCTGAGACTAAGCCGA
1 GAAAGATGAA-AAAGTCTCCCGAGTCTAAGCCGA
1830749 TAGGCAGACA
Statistics
Matches: 228, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
83 2 0.01
84 172 0.75
85 28 0.12
86 26 0.11
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (84 bp):
GAAAGATGAAAAAGTCTCCCGAGTCTAAGCCGACGAGCAGATGAAAGATGAAGAAGTTTCCTAGG
TCTAAGCTGACAGGCAGAT
Found at i:1830544 original size:42 final size:42
Alignment explanation
Indices: 1830358--1830790 Score: 195
Period size: 42 Copynumber: 10.3 Consensus size: 42
1830348 AGTATCTCGA
* * * * ***
1830358 GTCTAAGTCGACAAGCACAAGAAAGATGAAAAAGTCTCTTGG
1 GTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAGTCTCCCAG
* * * ***
1830400 GACTAAGCCGAC-GAGCAGATGAAAGATGAAGAAGTCTCTTGG
1 GTCTAAGCCGACAG-GCAGAGGAAAGATGAAAAAGTCTCCCAG
* * * * *
1830442 GTTTGAGTCAACAGGCAGATGAAAGATGAAAAAGTCTCCCAG
1 GTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAGTCTCCCAG
* * * *
1830484 GTCTGAGCCGAC-GAGCAGAGGAAAGATGAAGAAGTTTCCTAG
1 GTCTAAGCCGACAG-GCAGAGGAAAGATGAAAAAGTCTCCCAG
* * * * *
1830526 GTCTAAGCTGACAGGCAGACGATTA-ATGAAAATGTCTCTC-G
1 GTCTAAGCCGACAGGCAGAGGA-AAGATGAAAAAGTCTCCCAG
** ** * * *
1830567 AGTCTAAGCCGA-AGAGCAGATTATGGATGAAAGAGTTTCCCAA
1 -GTCTAAGCCGACAG-GCAGAGGAAAGATGAAAAAGTCTCCCAG
* * * **
1830610 GTCTAAGCTGACGGGCAGATGATGGATGAAAAAGTCTCCC-G
1 GTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAGTCTCCCAG
* * *
1830651 AGTCTAAGTCGA-TGAGCAGACAGAAA-ATGAAGAAAGTCTCCCGAG
1 -GTCTAAGCCGACAG-GCAGA-GGAAAGATGAA-AAAGTCTCCC-AG
* * ** * * *
1830696 AT-TGAGTTGACAGGCAAATGAAAGATGAAGAAAGTCT-CCTG
1 GTCTAAGCCGACAGGCAGAGGAAAGATGAA-AAAGTCTCCCAG
* * * *
1830737 AGACTAAGCCGATAGGCAGA-CAAAGGATAAAAAAGTCTCCCAG
1 -GTCTAAGCCGACAGGCAGAGGAAA-GATGAAAAAGTCTCCCAG
1830780 GTCTAAGCCGA
1 GTCTAAGCCGA
1830791 TGGGCAGATA
Statistics
Matches: 299, Mismatches: 70, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
41 7 0.02
42 231 0.77
43 58 0.19
44 2 0.01
45 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (42 bp):
GTCTAAGCCGACAGGCAGAGGAAAGATGAAAAAGTCTCCCAG
Found at i:1830754 original size:43 final size:44
Alignment explanation
Indices: 1830634--1830777 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 44
1830624 GCAGATGATG
*
1830634 GATGAA-AAAGTCTCCCGAGTCTAAGTCGAT-GAGCAGACAGAAA
1 GATGAAGAAAGTCTCCCGAGACTAAGTCGATAG-GCAGACAGAAA
* * * *
1830677 -ATGAAGAAAGTCTCCCGAGATTGAGTTGACAGGCA-A-ATGAAA
1 GATGAAGAAAGTCTCCCGAGACTAAGTCGATAGGCAGACA-GAAA
* * *
1830719 GATGAAGAAAGTCTCCTGAGACTAAGCCGATAGGCAGACA-AAG
1 GATGAAGAAAGTCTCCCGAGACTAAGTCGATAGGCAGACAGAAA
*
1830762 GAT-AAAAAAGTCTCCC
1 GATGAAGAAAGTCTCCC
1830778 AGGTCTAAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 21 0.26
43 56 0.69
44 2 0.02
45 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (44 bp):
GATGAAGAAAGTCTCCCGAGACTAAGTCGATAGGCAGACAGAAA
Found at i:1830907 original size:42 final size:42
Alignment explanation
Indices: 1830851--1830993 Score: 157
Period size: 42 Copynumber: 3.4 Consensus size: 42
1830841 TAGGGAAATT
* * * *
1830851 AAAGGTGAAAAAGTCTCTCGGGTATGAGCCGACT-GGTAGACA
1 AAAGATGAAGAAGTCTCTCGGGTATGAGCCGA-TGGGCAGACG
** *
1830893 AAAGATGAAGAAGTCT-TCTAAG-ACTGAGCCGATGGGCAGATG
1 AAAGATGAAGAAGTCTCTC-GGGTA-TGAGCCGATGGGCAGACG
* *
1830935 AAAGATGAAGAAGTCTCTCGGGTTTGAGCCAATGGGCAGACG
1 AAAGATGAAGAAGTCTCTCGGGTATGAGCCGATGGGCAGACG
1830977 AAAGATGAAGAAGTCTC
1 AAAGATGAAGAAGTCTC
1830994 CTTGGTCTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
41 4 0.05
42 78 0.93
43 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (42 bp):
AAAGATGAAGAAGTCTCTCGGGTATGAGCCGATGGGCAGACG
Found at i:1831007 original size:84 final size:84
Alignment explanation
Indices: 1830851--1831011 Score: 207
Period size: 84 Copynumber: 1.9 Consensus size: 84
1830841 TAGGGAAATT
* * * *
1830851 AAAGGTGAAAAAGTCTCTCGGGTATGAGCCGACTGGTAGACAAAAGATGAAGAAGTCTTCTAAGA
1 AAAGATGAAAAAGTCTCTCGGGTATGAGCCGAATGGCAGACAAAAGATGAAGAAGTCTCCTAAGA
*
1830916 CTGAGCCGATGGGCAGATG
66 CTAAGCCGATGGGCAGATG
* * * **
1830935 AAAGATGAAGAAGTCTCTCGGGTTTGAGCC-AATGGGCAGACGAAAGATGAAGAAGTCTCCTTGG
1 AAAGATGAAAAAGTCTCTCGGGTATGAGCCGAAT-GGCAGACAAAAGATGAAGAAGTCTCCTAAG
*
1830999 TCTAAGCCGATGG
65 ACTAAGCCGATGG
1831012 CCAAAGGATT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
83 2 0.03
84 63 0.97
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (84 bp):
AAAGATGAAAAAGTCTCTCGGGTATGAGCCGAATGGCAGACAAAAGATGAAGAAGTCTCCTAAGA
CTAAGCCGATGGGCAGATG
Found at i:1831026 original size:84 final size:84
Alignment explanation
Indices: 1830851--1831036 Score: 203
Period size: 84 Copynumber: 2.2 Consensus size: 84
1830841 TAGGGAAATT
* * * * *
1830851 AAAGGTGAAAAAGTCTCTCGGGTATGAGCCGACTGGTAGACAAAAGATGAAGAAGTCTTCTAAGA
1 AAAGATGAAGAAGTCTCTCGGGTATGAGCCGAATGGCAGACAAAAGATGAAGAAGTCTCCTAAGA
* * * *
1830916 CTGAGCCGATGGGCAGATG
66 CTAAGCCGATGGCCAAAGG
* * **
1830935 AAAGATGAAGAAGTCTCTCGGGTTTGAGCC-AATGGGCAGACGAAAGATGAAGAAGTCTCCTTGG
1 AAAGATGAAGAAGTCTCTCGGGTATGAGCCGAAT-GGCAGACAAAAGATGAAGAAGTCTCCTAAG
*
1830999 TCTAAGCCGATGGCCAAAGG
65 ACTAAGCCGATGGCCAAAGG
**
1831019 ATTGATGAAGAAAGTCTC
1 AAAGATGAAG-AAGTCTC
1831037 CCAAGTCTGA
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
83 2 0.02
84 75 0.89
85 7 0.08
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (84 bp):
AAAGATGAAGAAGTCTCTCGGGTATGAGCCGAATGGCAGACAAAAGATGAAGAAGTCTCCTAAGA
CTAAGCCGATGGCCAAAGG
Found at i:1831172 original size:514 final size:514
Alignment explanation
Indices: 1830202--1831172 Score: 1075
Period size: 514 Copynumber: 1.9 Consensus size: 514
1830192 CGGGTAGAGA
* * * * * *
1830202 AAAGATGAAGAAAGTCTCCCGGGACTGAGCCGACGGGTAGACAAAAGATGAAGAAGTCTCCCGAG
1 AAAGATGAAGAAAGTCTCCCGAGACTAAGCCGACAGGCAGACAAAAGATAAAAAAGTCTCCCGAG
* * *
1830267 TCTAAATCGACGGGCAAACAAAGGGCTTTAGGGAAAGGAAGTCTCTAGGGTCAAAGCTATTAGGC
66 TCTAAACCGACGGGCAAACAAAGGGCTTAAGGGAAAGGAAGTCTCCAGGGTCAAAGCTATTAGGC
* *
1830332 AAACTAAAGGTGAAAAAGTATCTCGAGTCTAAGTCGACAAGCACAAGAAAGATGAAAAAGTCTCT
131 AAACTAAAGGTGAAAAAGTATCTCGAGTATAAGCCGACAAGCACAAGAAAGATGAAAAAGTCTCT
** * * *
1830397 TGGGACTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTTGGGTTTGAGTCAACAGGCAGAT
196 TAAGACTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGGGTTTGAGCCAACAGGCAGAC
* * * * *
1830462 GAAAGATGAAAAAGTCTCCCAGGTCTGAGCCGACGAGCAGAGGAAAGATGAAGAAGTTTCCTAGG
261 GAAAGATGAAAAAGTCTCCCAGGTCTAAGCCGACGAGCAAAGGAAAGATGAAGAAGTCTCCCAAG
** * * * * *
1830527 TCTAAGCTGACAGGCAGACGATTAATGAAAATGTCTCTCGAGTCTAAGCCGAAGAGCAGATTATG
326 TCTAAGCCAACAGGCAGACGATGAATGAAAATGTCTCTAGAGTCTAAGCCGAAGAGCAAATGATA
* * * * ** *
1830592 GATGAAAGAGTTTCCCAAGTCTAAGCTGACGGGCAGATGATGGATGAAAAAGTCTCCCGAGTCTA
391 GAAGAAAAAGTCTACCAAGTCTAAGCTGACGGGCAGAACATGGATAAAAAAGTCTCCCGAGTCTA
1830657 AGTCGATGAGCAGACAGAAAATGAAGAAAGTCTCCCGAGATTGAGTTGACAGGCAAATG
456 AGTCGATGAGCAGACAGAAAATGAAGAAAGTCTCCCGAGATTGAGTTGACAGGCAAATG
* * *
1830716 AAAGATGAAGAAAGTCTCCTGAGACTAAGCCGATAGGCAGACAAAGGATAAAAAAGTCTCCC-AG
1 AAAGATGAAGAAAGTCTCCCGAGACTAAGCCGACAGGCAGACAAAAGATAAAAAAGTCTCCCGA-
* * * * *
1830780 GTCTAAGCCGATGGGCAGATAAAGGGCTTAAGGGTAAGGAAGTCTCCAGGGTCAAAGCTGA-TAG
65 GTCTAAACCGACGGGCAAACAAAGGGCTTAAGGGAAAGGAAGTCTCCAGGGTCAAAGCT-ATTAG
* * * * * ** * * *
1830844 GGAAATTAAAGGTGAAAAAGTCTCTCGGGTATGAGCCGACTGGTAGACA-AAAGATGAAGAAGTC
129 GCAAACTAAAGGTGAAAAAGTATCTCGAGTATAAGCCGACAAGCACA-AGAAAGATGAAAAAGTC
* * * **
1830908 T-TCTAAGACTGAGCCGATGGGCAGATGAAAGATGAAGAAGTCTCTCGGGTTTGAGCCAATGGGC
193 TCT-TAAGACTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGGGTTTGAGCCAACAGGC
* ** * **
1830972 AGACGAAAGATGAAGAAGTCTCCTTGGTCTAAGCCGATG-GCCAAAGGATTGATGAAGAAAGTCT
257 AGACGAAAGATGAAAAAGTCTCCCAGGTCTAAGCCGACGAG-CAAAGGAAAGATGAAG-AAGTCT
* * * * * *
1831036 CCCAAGTCTGAGCCAAC-GAGTAGACGATGGATGAAGGA-GTTTCTAGGGTCT-AGCCGACA-AG
320 CCCAAGTCTAAGCCAACAG-GCAGACGATGAATGAA-AATGTCTCTAGAGTCTAAGCCGA-AGAG
** * * *
1831097 CAAATGATAGAAGAAAAAGTCTACTGAGTCTGAG-TCGATGGGCA-AACATTGATAAAAGAAGTC
382 CAAATGATAGAAGAAAAAGTCTACCAAGTCTAAGCT-GACGGGCAGAACATGGATAAAA-AAGTC
1831160 TCCC-AGGTCTAAG
445 TCCCGA-GTCTAAG
1831173 CCGACAGGTA
Statistics
Matches: 370, Mismatches: 75, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
513 14 0.04
514 312 0.84
515 43 0.12
516 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (514 bp):
AAAGATGAAGAAAGTCTCCCGAGACTAAGCCGACAGGCAGACAAAAGATAAAAAAGTCTCCCGAG
TCTAAACCGACGGGCAAACAAAGGGCTTAAGGGAAAGGAAGTCTCCAGGGTCAAAGCTATTAGGC
AAACTAAAGGTGAAAAAGTATCTCGAGTATAAGCCGACAAGCACAAGAAAGATGAAAAAGTCTCT
TAAGACTAAGCCGACGAGCAGATGAAAGATGAAGAAGTCTCTCGGGTTTGAGCCAACAGGCAGAC
GAAAGATGAAAAAGTCTCCCAGGTCTAAGCCGACGAGCAAAGGAAAGATGAAGAAGTCTCCCAAG
TCTAAGCCAACAGGCAGACGATGAATGAAAATGTCTCTAGAGTCTAAGCCGAAGAGCAAATGATA
GAAGAAAAAGTCTACCAAGTCTAAGCTGACGGGCAGAACATGGATAAAAAAGTCTCCCGAGTCTA
AGTCGATGAGCAGACAGAAAATGAAGAAAGTCTCCCGAGATTGAGTTGACAGGCAAATG
Found at i:1831325 original size:42 final size:42
Alignment explanation
Indices: 1831219--1831330 Score: 107
Period size: 42 Copynumber: 2.7 Consensus size: 42
1831209 GACTGAGTCG
* * **
1831219 ACGGGCTGAAGAAAGATAAAAAAGTCTCTCGGGTCTAAGCTA
1 ACGGGCAGACGAAAGATAAAAAAGTCTCTCAAGTCTAAGCTA
* ** ** * * *
1831261 ATGGGCAGACGATTGAGGAAAAAGTCTCTCAAGTTTGAGGTA
1 ACGGGCAGACGAAAGATAAAAAAGTCTCTCAAGTCTAAGCTA
*
1831303 ACGGGTAGACGAAAGATAAAAAAGTCTC
1 ACGGGCAGACGAAAGATAAAAAAGTCTC
1831331 CCGACCTAAG
Statistics
Matches: 52, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20
Consensus pattern (42 bp):
ACGGGCAGACGAAAGATAAAAAAGTCTCTCAAGTCTAAGCTA
Done.