Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold15
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4011073
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 11440 characters in sequence are not A, C, G, or T
File 19 of 25
Found at i:3045957 original size:12 final size:12
Alignment explanation
Indices: 3045891--3045962 Score: 51
Period size: 12 Copynumber: 5.8 Consensus size: 12
3045881 TTTTTAAAAT
3045891 TTTTATTATTAAA
1 TTTTATTATT-AA
3045904 TATATTATT-TTAA
1 T-T-TTATTATTAA
** *
3045917 TTAAATTAATAA
1 TTTTATTATTAA
3045929 TTTT-TTAATT-A
1 TTTTATT-ATTAA
3045940 TATTTATTATTAA
1 T-TTTATTATTAA
3045953 TTTTATTATT
1 TTTTATTATT
3045963 TTATTTTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 15
0.69 0.09 0.22
Matches are distributed among these distances:
11 7 0.15
12 23 0.50
13 8 0.17
14 3 0.07
15 5 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTTATTATTAA
Found at i:3053156 original size:22 final size:22
Alignment explanation
Indices: 3053131--3053177 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
3053121 GAATCAAATA
3053131 TAATAACAGTAATTAATATATT
1 TAATAACAGTAATTAATATATT
3053153 TAATAACAGTAATTAATATATT
1 TAATAACAGTAATTAATATATT
3053175 TAA
1 TAA
3053178 GGTTATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (22 bp):
TAATAACAGTAATTAATATATT
Found at i:3053891 original size:7 final size:7
Alignment explanation
Indices: 3053881--3053916 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
3053871 GAAAAGGCAT
3053881 ATAGCAA
1 ATAGCAA
**
3053888 ATAGTGA
1 ATAGCAA
3053895 ATAGCAA
1 ATAGCAA
3053902 ATAGCAA
1 ATAGCAA
3053909 ATAGCAA
1 ATAGCAA
3053916 A
1 A
3053917 GCATCAACCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.11, G:0.17, T:0.17
Consensus pattern (7 bp):
ATAGCAA
Found at i:3056769 original size:6 final size:6
Alignment explanation
Indices: 3056760--3056788 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
3056750 CTCTCTCTCT
3056760 CACACC CACACC CACACC CACACC CACAC
1 CACACC CACACC CACACC CACACC CACAC
3056789 GAAACTCTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (6 bp):
CACACC
Found at i:3060999 original size:5 final size:5
Alignment explanation
Indices: 3060989--3061013 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
3060979 TGTTTGAATG
3060989 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
3061014 TTCAGTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:3068709 original size:64 final size:64
Alignment explanation
Indices: 3068608--3068733 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
3068598 AAATTTGCCA
* * ** *
3068608 AGAAAACTTGCCAACATGTTTGTTTGGGGGATAACTTTTTCTGTGTTAGAAAATAACTATTTAT
1 AGAAAACCTGCCAACATGTCTGTTTGGGGGATAACTTTTTCTAAGTTAAAAAATAACTATTTAT
*
3068672 AGAAAACCTGCCAACGTGTCTGTTTGGGGGATAACTTTTTCTAAGTTAAAAAATAACTATTT
1 AGAAAACCTGCCAACATGTCTGTTTGGGGGATAACTTTTTCTAAGTTAAAAAATAACTATTT
3068734 GTAACATTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.37
Consensus pattern (64 bp):
AGAAAACCTGCCAACATGTCTGTTTGGGGGATAACTTTTTCTAAGTTAAAAAATAACTATTTAT
Found at i:3071855 original size:33 final size:32
Alignment explanation
Indices: 3071818--3071881 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
3071808 TACAAGCCAA
*
3071818 TGTATCGATACATTTTGGGATGTATCGATACAG
1 TGTATCGATACATATTGGG-TGTATCGATACAG
*
3071851 TGTATCGATACATATTGTGTGTATCGATACA
1 TGTATCGATACATATTGGGTGTATCGATACA
3071882 AATTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATATTGGGTGTATCGATACAG
Found at i:3071856 original size:13 final size:13
Alignment explanation
Indices: 3071838--3071862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3071828 CATTTTGGGA
3071838 TGTATCGATACAG
1 TGTATCGATACAG
3071851 TGTATCGATACA
1 TGTATCGATACA
3071863 TATTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:3071961 original size:20 final size:21
Alignment explanation
Indices: 3071917--3071968 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
3071907 AATGACCTGC
**
3071917 ATCGATACATTCTTTTCAAGT
1 ATCGATACATTCTGGTCAAGT
*
3071938 ATCGATACATT-TGGTCATGT
1 ATCGATACATTCTGGTCAAGT
3071958 ATCGATACATT
1 ATCGATACATT
3071969 GTATCGATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (21 bp):
ATCGATACATTCTGGTCAAGT
Found at i:3073909 original size:81 final size:82
Alignment explanation
Indices: 3073753--3073915 Score: 204
Period size: 82 Copynumber: 2.0 Consensus size: 82
3073743 TTTTAAGGAT
* * * * * * * *
3073753 CGGGTTTAGAGTATCTCCTCGAAAGAGTGGATATGTAGTTTTCCTAAAGAATTATACGAAGGAAA
1 CGGGGTTAGAGTATCTCCTCGAAAGAGTGGAGATGGAGTTTCCCCAAAGAAATATACAAAGAAAA
3073818 AGTTTAAGTTTTTTGAA
66 AGTTTAAGTTTTTTGAA
* *
3073835 CGGGGTTAGAGTATC-CCTTCGGAGGAGTGGAGATGGAGTTTCCCCAAA-AAATATACAAAGAAA
1 CGGGGTTAGAGTATCTCC-TCGAAAGAGTGGAGATGGAGTTTCCCCAAAGAAATATACAAAGAAA
*
3073898 AAGTTTGAGTTTTTTGAA
65 AAGTTTAAGTTTTTTGAA
3073916 AATTGAGGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 31 0.45
82 38 0.55
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (82 bp):
CGGGGTTAGAGTATCTCCTCGAAAGAGTGGAGATGGAGTTTCCCCAAAGAAATATACAAAGAAAA
AGTTTAAGTTTTTTGAA
Found at i:3074745 original size:13 final size:13
Alignment explanation
Indices: 3074727--3074752 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3074717 TACACCAAGT
3074727 ATGTATCGATACA
1 ATGTATCGATACA
3074740 ATGTATCGATACA
1 ATGTATCGATACA
3074753 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3074750 original size:32 final size:33
Alignment explanation
Indices: 3074709--3074772 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3074699 TAGCCAAACT
* **
3074709 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
3074741 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3074773 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3080073 original size:32 final size:33
Alignment explanation
Indices: 3080011--3080078 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
3080001 CGTTACAAGC
* *
3080011 CAATGTATCGATGCATTTTATGATGTATCGATA
1 CAATGTATCGATACATATTATGATGTATCGATA
* *
3080044 CAATGTATTGATACATATTGTG-TGTATCGATA
1 CAATGTATCGATACATATTATGATGTATCGATA
3080076 CAA
1 CAA
3080079 ATTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 13 0.42
33 18 0.58
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (33 bp):
CAATGTATCGATACATATTATGATGTATCGATA
Found at i:3080161 original size:20 final size:21
Alignment explanation
Indices: 3080111--3080163 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
3080101 GCCAATGACC
**
3080111 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
* *
3080132 AGTGTCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
3080152 TGTATCGATACA
1 TGTATCGATACA
3080164 ATGTATCGAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:3080169 original size:13 final size:13
Alignment explanation
Indices: 3080151--3080175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3080141 ACATTTGGTC
3080151 ATGTATCGATACA
1 ATGTATCGATACA
3080164 ATGTATCGATAC
1 ATGTATCGATAC
3080176 TGTGCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3082186 original size:21 final size:21
Alignment explanation
Indices: 3082155--3082206 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
3082145 GCTGCTAGTG
* *
3082155 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGG-TGCCCGGTCGCAACC
3082177 TGGGGGTG-CCGGTCGCAACC
1 TGGGGGTGCCCGGTCGCAACC
3082197 TGGTGGGTGC
1 TGG-GGGTGC
3082207 TGCCTAGAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 13 0.50
21 7 0.27
22 6 0.23
ACGTcount: A:0.06, C:0.27, G:0.48, T:0.19
Consensus pattern (21 bp):
TGGGGGTGCCCGGTCGCAACC
Found at i:3082497 original size:21 final size:22
Alignment explanation
Indices: 3082467--3082509 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
3082457 CTGTTTTTGT
3082467 TGATGATTTTG-A-TGAAAAAC
1 TGATGATTTTGAAGTGAAAAAC
3082487 TGATGTATTTTGAAGTGAAAAAC
1 TGATG-ATTTTGAAGTGAAAAAC
3082510 AAGAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 6 0.30
22 1 0.05
23 8 0.40
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (22 bp):
TGATGATTTTGAAGTGAAAAAC
Found at i:3082869 original size:8 final size:8
Alignment explanation
Indices: 3082856--3082881 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
3082846 AACATCATTT
3082856 ATCACAAA
1 ATCACAAA
3082864 ATCACAAA
1 ATCACAAA
3082872 ATCACAAA
1 ATCACAAA
3082880 AT
1 AT
3082882 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:3088843 original size:19 final size:20
Alignment explanation
Indices: 3088798--3088849 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3088788 TTACAAGCCA
*
3088798 ATGTATCGATACATTTTATG
1 ATGTATCGATACATATTATG
*
3088818 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTATG
*
3088838 -TGTATCAATACA
1 ATGTATCGATACA
3088850 AATTTGGCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATATTATG
Found at i:3098224 original size:9 final size:9
Alignment explanation
Indices: 3098210--3098259 Score: 57
Period size: 10 Copynumber: 5.4 Consensus size: 9
3098200 TAAAGAAAAC
3098210 AAAAAAAGA
1 AAAAAAAGA
3098219 AAAAAAAGCA
1 AAAAAAAG-A
3098229 AAAAAAA-A
1 AAAAAAAGA
*
3098237 AAAAGAAGA
1 AAAAAAAGA
*
3098246 AAAATCAAGA
1 AAAA-AAAGA
3098256 AAAA
1 AAAA
3098260 GACAAAGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 7 0.19
9 13 0.36
10 16 0.44
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:3098232 original size:18 final size:18
Alignment explanation
Indices: 3098205--3098259 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
3098195 ATGAATAAAG
3098205 AAAA-CAAAAAAAGAAAA
1 AAAAGCAAAAAAAGAAAA
3098222 AAAAGCAAAAAAA-AAAA
1 AAAAGCAAAAAAAGAAAA
3098239 AAGAAG-AAAAATCAAGAAAA
1 AA-AAGCAAAAA--AAGAAAA
3098259 A
1 A
3098260 GACAAAGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
17 15 0.45
18 11 0.33
19 2 0.06
20 5 0.15
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (18 bp):
AAAAGCAAAAAAAGAAAA
Found at i:3098249 original size:15 final size:15
Alignment explanation
Indices: 3098212--3098241 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
3098202 AAGAAAACAA
3098212 AAAAAGAAAAAAAAGC
1 AAAAA-AAAAAAAAGC
3098228 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
3098242 AAGAAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAGC
Found at i:3098271 original size:24 final size:24
Alignment explanation
Indices: 3098205--3098259 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
3098195 ATGAATAAAG
* *
3098205 AAAACAAAAAAAGAAAAAAAAGCA
1 AAAAAAAAAAAAGAAGAAAAAGCA
*
3098229 AAAAAAAAAAAAGAAGAAAAATCA
1 AAAAAAAAAAAAGAAGAAAAAGCA
*
3098253 AGAAAAA
1 AAAAAAA
3098260 GACAAAGAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAAGAAGAAAAAGCA
Found at i:3100428 original size:13 final size:13
Alignment explanation
Indices: 3100410--3100440 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3100400 ACTTTTCACT
3100410 ATGTATCGATACA
1 ATGTATCGATACA
*
3100423 ATGTATTGATACA
1 ATGTATCGATACA
3100436 ATGTA
1 ATGTA
3100441 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3101509 original size:16 final size:16
Alignment explanation
Indices: 3101485--3101525 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3101475 TTTCATTCAT
* **
3101485 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAAAA
3101501 CAAGCAAAGTTAAAAA
1 CAAGCAAAGTTAAAAA
3101517 CAAGCAAAG
1 CAAGCAAAG
3101526 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAAAA
Found at i:3103775 original size:33 final size:33
Alignment explanation
Indices: 3103738--3103804 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3103728 TTCAACGATT
3103738 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3103771 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3103804 T
1 T
3103805 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3103776 original size:13 final size:13
Alignment explanation
Indices: 3103758--3103782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3103748 CATAAAATGT
3103758 TGTATCGATACAA
1 TGTATCGATACAA
3103771 TGTATCGATACA
1 TGTATCGATACA
3103783 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3103866 original size:13 final size:13
Alignment explanation
Indices: 3103848--3103872 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3103838 ATTACTCACA
3103848 TGTATCGATACAT
1 TGTATCGATACAT
3103861 TGTATCGATACA
1 TGTATCGATACA
3103873 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3104009 original size:52 final size:52
Alignment explanation
Indices: 3103881--3104001 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
3103871 CACTGATCTT
*
3103881 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
3103933 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3103985 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3104002 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3107272 original size:21 final size:21
Alignment explanation
Indices: 3107247--3107286 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3107237 GTCAGGAGCA
3107247 TCTCGTCATGCAATGAATGCC
1 TCTCGTCATGCAATGAATGCC
3107268 TCTCGTCATGCAATGAATG
1 TCTCGTCATGCAATGAATG
3107287 TCATTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (21 bp):
TCTCGTCATGCAATGAATGCC
Found at i:3112300 original size:17 final size:17
Alignment explanation
Indices: 3112274--3112311 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3112264 AAGTCCACAA
* *
3112274 CTCAGTGGCAATCTCTT
1 CTCAGCGGCAATCTCTG
3112291 CTCAGCGGCAATCTCTG
1 CTCAGCGGCAATCTCTG
3112308 CTCA
1 CTCA
3112312 AAGTCCACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.29
Consensus pattern (17 bp):
CTCAGCGGCAATCTCTG
Found at i:3112381 original size:31 final size:31
Alignment explanation
Indices: 3112291--3112487 Score: 240
Period size: 31 Copynumber: 6.3 Consensus size: 31
3112281 GCAATCTCTT
* *
3112291 CTCAGCGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3112322 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
3112354 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
*
3112385 CTCAGTGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3112416 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
*
3112448 CTCAGTGGC-AT-TTTGTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCT-TCTCAAAGTCCACGA
*
3112478 CTTAGTGGCA
1 CTCAGTGGCA
3112488 TTTTTTTCTT
Statistics
Matches: 147, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
30 30 0.20
31 65 0.44
32 46 0.31
33 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (31 bp):
CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
Found at i:3112452 original size:94 final size:94
Alignment explanation
Indices: 3112291--3112552 Score: 348
Period size: 94 Copynumber: 2.8 Consensus size: 94
3112281 GCAATCTCTT
*
3112291 CTCAGCGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
3112356 CAGTGGCAATCTCT-TCTCAAAGTCCACGA
66 CAGTGGCAAT-TCTGTCTCAAAGTCCACGA
3112385 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
*
3112450 CAGTGGC-ATTTTGTCTCAAAGTCCACGA
66 CAGTGGCAATTCTGTCTCAAAGTCCACGA
* * * * * * * * * * * *
3112478 CTTAGTGGCATTTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAA
1 CTCAGTGGCAATCTCTGC-TCAAAGTCCACGACTCAGTGGCATCTT-TTCCTTTAAAGTCCACGA
*
3112543 CTCTGTGGCA
64 CTCAGTGGCA
3112553 CCCTTTTAAA
Statistics
Matches: 149, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
92 2 0.01
93 30 0.20
94 93 0.62
95 24 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (94 bp):
CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
CAGTGGCAATTCTGTCTCAAAGTCCACGA
Found at i:3112468 original size:62 final size:62
Alignment explanation
Indices: 3112311--3112519 Score: 255
Period size: 62 Copynumber: 3.3 Consensus size: 62
3112301 ATCTCTGCTC
* * *
3112311 AAAGTCCACGACTCAGTGGCATCTTT-TCCTTTAAAGTCCACGACTCAGTGGCAATCTCTTC-TC
1 AAAGTCCACGACTCAGTGGCATCTTTGT-C-TCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTT
*
3112374 AAAGTCCACGACTCAGTGGCAATCTCTG-CTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGC-ATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTT-CTTT
* *
3112437 AAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTTAGTGGCATTTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCA-TCTTTTCTTT
* * *
3112499 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
3112520 CCTTGTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
61 9 0.07
62 69 0.53
63 47 0.36
64 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTTT
Found at i:3112542 original size:33 final size:34
Alignment explanation
Indices: 3112496--3113389 Score: 808
Period size: 34 Copynumber: 26.9 Consensus size: 34
3112486 CATTTTTTTC
*
3112496 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3112530 TTT-AAGTCCACAACTCTGTGGCA-C-----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
3112557 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3112591 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
3112619 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3112653 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3112681 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3112714 TTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3112747 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3112783 TTT-AAGTCCC-CAACTCCGTGGCACCTTCTT-CT
1 TTTAAAG-CCCACAACTCCGTGGCACCTTTTTCCT
*
3112815 TTTAAAGCCCACAACTTCGTGGCACTCTTTCTT-CT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTT-TTCCT
3112850 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3112884 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3112921 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3112955 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * *
3112991 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
* * *
3113025 TCTTAAAGCCCACACAAGTCGGTGGCAACCTTCTT-CT
1 T-TTAAAG-CC-CACAACTCCGTGGC-ACCTTTTTCCT
*
3113062 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
**
3113096 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCT
3113132 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* ****
3113166 TTTAAAGCCCACAACTCTGTGGCACC-TACGACT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * **
3113199 TTGT---G-GCAC-TCT-C-TTTC-CC-TTTT--T
1 TT-TAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3113223 A---AAGCCCACAACTCCGTGGCACCTTTTTCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3113254 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3113290 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3113324 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* *
3113360 TTT-AAGTCCACAACTCCGTGGCATCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTT
3113390 TTCCTTCCCA
Statistics
Matches: 714, Mismatches: 74, Indels: 144
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.00
24 4 0.01
25 2 0.00
26 4 0.01
27 35 0.05
28 40 0.06
29 6 0.01
30 3 0.00
31 1 0.00
32 10 0.01
33 157 0.22
34 161 0.23
35 141 0.20
36 60 0.08
37 72 0.10
38 13 0.02
39 4 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:3112603 original size:34 final size:34
Alignment explanation
Indices: 3112405--3113190 Score: 637
Period size: 33 Copynumber: 23.6 Consensus size: 34
3112395 ATCTCTGCTC
* * * *
3112405 AAAGTCCACGACTCAGTGGCA-TCTTTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * *
3112437 AAAGTCCACGACTCAGTGGCA-TTTTGTCTC---
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * **
3112467 AAAGTCCACGACTTAGTGGCA-TTTTTT-TCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3112499 AAAGCCCACAACTCCGTGGCACCTTGTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * *
3112532 TAAGTCCACAACTCTGTGGCAC-----CCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3112560 AAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
* *
3112595 -AAGTCCACAACTCCGTGGCAC-----CCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3112622 AAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
*
3112657 -AAGTCCACAACTCCGTGGCAC------C-CGTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
* *
3112684 -AAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
3112717 AAAGCCCACAACTCCGTGGCACTTTTTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3112750 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTCTTT
* * *
3112785 TAAGTCCC-CAACTCCGTGGCACCTTCTTCT-TTT
1 AAAG-CCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3112818 AAAGCCCACAACTTCGTGGCACTCTTTCTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACT-TTT-TTCTCTTT
* *
3112853 CAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3112888 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTC-TTT
3112924 CAAAGCCCACAACTCCGTGGCACTTTTTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3112958 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTCTTT
* * * *
3112993 TAAGTCCACAACTCCGTGGCA-TCTTTCTCCCTTCTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTC-T-TT
* * * *
3113029 AAAGCCCACACAAGTCGGTGGCAACCTTCTTCT-TTT
1 AAAG-CC-CACAACTCCGTGGC-ACTTTTTTCTCTTT
* *
3113065 CAAAGCCCACAACTCCGTGGCACCTTCTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
**
3113099 AAAGCCCACAACTTTGTGGCACTCTTTTT-TCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCT-C-TTT
*
3113135 CAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3113169 AAAGCCCACAACTCTGTGGCAC
1 AAAGCCCACAACTCCGTGGCAC
3113191 CTACGACTTT
Statistics
Matches: 628, Mismatches: 69, Indels: 113
0.78 0.09 0.14
Matches are distributed among these distances:
26 1 0.00
27 26 0.04
28 42 0.07
29 3 0.00
30 25 0.04
32 46 0.07
33 144 0.23
34 144 0.23
35 80 0.13
36 50 0.08
37 50 0.08
38 12 0.02
39 5 0.01
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
Found at i:3112692 original size:27 final size:27
Alignment explanation
Indices: 3112654--3112705 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
3112644 TTTTTTCATC
*
3112654 TTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
3112681 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
3112706 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.21
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:3112906 original size:70 final size:66
Alignment explanation
Indices: 3112490--3113389 Score: 836
Period size: 70 Copynumber: 13.6 Consensus size: 66
3112480 TAGTGGCATT
* * *
3112490 TTTTTC-TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCTGTGGCA
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT-TTTCTTTTAAGCCCACAACTCCGTGGCA
3112553 CC
65 CC
* *
3112555 -----CTTTTAAAGCCCACAATTCCGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3112614 ACC
64 ACC
* * *
3112617 -----CTTTTAAAGCCCACAATTCTGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3112676 ACC
64 ACC
*
3112679 -----CGTTT-AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-TTTT-AAGCCCACAACTCCGTGGC
*
3112737 ACT
64 ACC
3112740 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCC-CAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAG-CCCACAACTCCGTGG
3112804 CACC
63 CACC
* *
3112808 TTCTTCTTTTAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTTTCAAAGCCCACAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTTT--AAGCCCACAACTCCGTGG
3112873 CACC
63 CACC
3112877 TTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGT
1 TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT--AAGCCCACAACTCCGT
*
3112942 GGCACT
61 GGCACC
*
3112948 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAGCCCACAACTCCGTGGC
*
3113013 ATC
64 ACC
* * * *
3113016 TTTCTCCCTTCTTAAAGCCCACACAAGTCGGTGGCAAC-CTTCTTCTTTTCAAAGCCCACAACTC
1 TTT-T-TCTT-TTAAAG-CC-CACAACTCCGTGGC-ACTCTTTTTCTTTT--AAGCCCACAACTC
3113080 CGTGGCACC
58 CGTGGCACC
* **
3113089 TTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTTTT--AAGCCCACAACTCCGTG
3113154 GCACC
62 GCACC
* **** * * **
3113159 TTTTTCTTTTAAAGCCCACAACTCTGTGGCAC-CTACGACTTTGT--G-GCAC-TCT-C-TTTC-
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT-TAAGCCCACAACTCCGTGGCA
3113216 CC
65 CC
*
3113218 ----T-TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCGTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-C-TTTTAAGCCCACAACTCCGTGGC
3113277 ACTC
64 AC-C
3113281 TTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTAAAGCCCACAACTCCGTG
1 TTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT-AAGCCCACAACTCCGTG
3113345 GCACTC
62 GCAC-C
*
3113351 TTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
1 TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
3113390 TTCCTTCCCA
Statistics
Matches: 725, Mismatches: 54, Indels: 109
0.82 0.06 0.12
Matches are distributed among these distances:
54 27 0.04
55 2 0.00
56 3 0.00
57 1 0.00
58 3 0.00
59 4 0.01
60 10 0.01
61 76 0.10
62 92 0.13
63 4 0.01
64 1 0.00
66 4 0.01
67 34 0.05
68 121 0.17
69 46 0.06
70 177 0.24
71 76 0.10
72 3 0.00
73 39 0.05
74 2 0.00
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (66 bp):
TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAGCCCACAACTCCGTGGCAC
C
Found at i:3113263 original size:34 final size:34
Alignment explanation
Indices: 3113201--3113389 Score: 247
Period size: 35 Copynumber: 5.4 Consensus size: 34
3113191 CTACGACTTT
*
3113201 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCAC-CT-TTTTCC-TTTTAAAGCCCACAACTCC
*
3113238 GTGGCACCTTTTTCCGTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
3113272 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCC
*
3113309 GTGGCA-CTTTTTTCTTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
*
3113342 GTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTTAAAGCCCACAACTCC
*
3113377 GTGGCATCTTTTT
1 GTGGCACCTTTTT
3113390 TTCCTTCCCA
Statistics
Matches: 139, Mismatches: 7, Indels: 15
0.86 0.04 0.09
Matches are distributed among these distances:
33 21 0.15
34 36 0.26
35 42 0.30
36 12 0.09
37 28 0.20
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.35
Consensus pattern (34 bp):
GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
Found at i:3113435 original size:32 final size:32
Alignment explanation
Indices: 3113397--3113488 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 32
3113387 TTTTTCCTTC
3113397 CCAAAGCCCACACAAGTCGGTGGCAAC-TCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
3113428 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAA-CTTCTT
3113462 CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCAAAGCCCACACAAGTCGGTGGCAAC
3113489 CCCTCTAAGC
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 2 0.03
32 25 0.43
33 25 0.43
34 6 0.10
ACGTcount: A:0.29, C:0.36, G:0.20, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
Found at i:3113436 original size:104 final size:102
Alignment explanation
Indices: 3113222--3113440 Score: 264
Period size: 105 Copynumber: 2.1 Consensus size: 102
3113212 TTTCCCTTTT
*
3113222 TAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
** * *
3113287 CCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTT
66 CCTTCCCAAAGCCCACAACTCCGTGGCAC-TTCTTC-TC
* *
3113326 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
1 TAAAGCCCACAACTCCGTGGCAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTC-TTTT
* * *
3113390 TTCCTTCCCAAAGCCCACACAAGTCGGTGGCAAC-TCTTC-C
64 TCCCTTCCCAAAG-CC-CACAACTCCGTGGC-ACTTCTTCTC
3113430 TAAAGCCCACA
1 TAAAGCCCACA
3113441 CAAGTCGGTG
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
104 36 0.36
105 44 0.44
106 6 0.06
107 12 0.12
108 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (102 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CCTTCCCAAAGCCCACAACTCCGTGGCACTTCTTCTC
Found at i:3113473 original size:33 final size:32
Alignment explanation
Indices: 3113397--3113489 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
3113387 TTTTTCCTTC
3113397 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
3113428 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
3113462 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
3113490 CCTCTAAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:3113612 original size:49 final size:49
Alignment explanation
Indices: 3113501--3114646 Score: 1521
Period size: 49 Copynumber: 23.5 Consensus size: 49
3113491 CTCTAAGCCA
*
3113501 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3113553 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113602 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3113654 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113703 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3113755 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113804 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3113856 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
3113905 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3113954 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114003 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3114052 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114095 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114144 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114187 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3114239 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114288 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114337 AATATAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114386 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3114435 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114478 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114527 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3114570 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTTTAAGTCC
*
3114622 AATGTAGCTGGCCTTGAATCAGCAC
1 AATATAGCTGGCCTTGAATCAGCAC
3114647 GTTGACATCC
Statistics
Matches: 968, Mismatches: 87, Indels: 78
0.85 0.08 0.07
Matches are distributed among these distances:
43 156 0.16
45 4 0.00
47 2 0.00
49 554 0.57
50 12 0.01
51 6 0.01
52 234 0.24
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3113669 original size:101 final size:98
Alignment explanation
Indices: 3113501--3114709 Score: 1791
Period size: 101 Copynumber: 12.3 Consensus size: 98
3113491 CTCTAAGCCA
*
3113501 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3113566 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113602 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3113667 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113703 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3113768 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3113804 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3113869 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3113905 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3113970 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114003 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3114068 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114095 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3114160 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114187 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3114252 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3114288 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3114353 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114386 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3114451 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114478 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3114543 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3114570 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGG--CATTTT-CATCTTTAAGTCCAATGTAGCTGGCC
* * * * *
3114635 TTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCC
63 TTGACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCC
* * *
3114677 AATATCGTTGGCCATGAATCAACATATTGGCAT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCAT
3114710 CTTTATCACT
Statistics
Matches: 1059, Mismatches: 25, Indels: 44
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.25
94 10 0.01
95 86 0.08
98 282 0.27
99 7 0.01
101 374 0.35
105 4 0.00
107 34 0.03
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3114111 original size:92 final size:92
Alignment explanation
Indices: 3113993--3114646 Score: 1065
Period size: 92 Copynumber: 6.9 Consensus size: 92
3113983 GCACCTTCAT
3113993 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
3114058 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
3114085 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3114150 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* *
3114177 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
3114242 GTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
63 GTAGCTGGCCTTGACTCAGCACATTGGCA----C
*
3114276 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATA
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3114341 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGACTCAGCACATTGGCA----C
3114374 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3114439 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGACTCAGCACATTGGCAC
3114468 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3114533 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* * *
3114560 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
*
3114625 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGACTCAGCAC
3114647 GTTGACATCC
Statistics
Matches: 538, Mismatches: 12, Indels: 21
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.49
94 9 0.02
95 81 0.15
98 141 0.26
99 4 0.01
101 41 0.08
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCAC
Found at i:3114455 original size:383 final size:383
Alignment explanation
Indices: 3113501--3114712 Score: 1992
Period size: 383 Copynumber: 3.1 Consensus size: 383
3113491 CTCTAAGCCA
* *
3113501 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
* *
3113566 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTG
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
*
3113631 GCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
128 GCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
* * *
3113696 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
184 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTA
*
3113761 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAG
246 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
3113826 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
305 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
3113891 TCATCTTTAAGTCC
370 TCATCTTTAAGTCC
*
3113905 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3113970 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3114035 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3114100 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
3114165 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
3114230 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3114288 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3114353 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3114418 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3114483 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
3114548 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
* * * * * *
3114613 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCC
* * *
3114677 AATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3114713 TATCACTTTT
Statistics
Matches: 780, Mismatches: 22, Indels: 27
0.94 0.03 0.03
Matches are distributed among these distances:
383 470 0.60
384 2 0.00
385 1 0.00
388 1 0.00
389 89 0.11
390 3 0.00
392 40 0.05
394 1 0.00
398 45 0.06
399 3 0.00
401 91 0.12
402 3 0.00
404 31 0.04
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (383 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3115619 original size:33 final size:33
Alignment explanation
Indices: 3115582--3115648 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3115572 TTCAACGATT
3115582 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3115615 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3115648 T
1 T
3115649 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3115620 original size:13 final size:13
Alignment explanation
Indices: 3115602--3115626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3115592 CATAAAATGT
3115602 TGTATCGATACAA
1 TGTATCGATACAA
3115615 TGTATCGATACA
1 TGTATCGATACA
3115627 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3115710 original size:13 final size:13
Alignment explanation
Indices: 3115692--3115716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3115682 ATTACTCACA
3115692 TGTATCGATACAT
1 TGTATCGATACAT
3115705 TGTATCGATACA
1 TGTATCGATACA
3115717 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3115853 original size:52 final size:52
Alignment explanation
Indices: 3115725--3115845 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
3115715 CACTGATCTT
*
3115725 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3115777 TGTATCGAGACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3115829 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3115846 ATAAATTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3115976 original size:13 final size:13
Alignment explanation
Indices: 3115958--3115988 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3115948 ACTTTTCACT
3115958 ATGTATCGATACA
1 ATGTATCGATACA
*
3115971 ATGTATTGATACA
1 ATGTATCGATACA
3115984 ATGTA
1 ATGTA
3115989 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3117057 original size:16 final size:16
Alignment explanation
Indices: 3117033--3117073 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3117023 TTTCATTCAT
* **
3117033 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAAAA
3117049 CAAGCAAAGTTAAAAA
1 CAAGCAAAGTTAAAAA
3117065 CAAGCAAAG
1 CAAGCAAAG
3117074 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAAAA
Found at i:3119322 original size:33 final size:33
Alignment explanation
Indices: 3119285--3119351 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3119275 TTCAACGATT
3119285 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3119318 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3119351 T
1 T
3119352 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3119323 original size:13 final size:13
Alignment explanation
Indices: 3119305--3119329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3119295 CATAAAATGT
3119305 TGTATCGATACAA
1 TGTATCGATACAA
3119318 TGTATCGATACA
1 TGTATCGATACA
3119330 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3119413 original size:13 final size:13
Alignment explanation
Indices: 3119395--3119419 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3119385 ATTACTCACA
3119395 TGTATCGATACAT
1 TGTATCGATACAT
3119408 TGTATCGATACA
1 TGTATCGATACA
3119420 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3119556 original size:52 final size:52
Alignment explanation
Indices: 3119428--3119548 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
3119418 CACTGATCTT
*
3119428 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
3119480 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3119532 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3119549 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3122819 original size:21 final size:21
Alignment explanation
Indices: 3122794--3122833 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3122784 GTCAGGAGCA
3122794 TCTCGTCATGCAATGAATGCC
1 TCTCGTCATGCAATGAATGCC
3122815 TCTCGTCATGCAATGAATG
1 TCTCGTCATGCAATGAATG
3122834 TCATTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (21 bp):
TCTCGTCATGCAATGAATGCC
Found at i:3127844 original size:17 final size:17
Alignment explanation
Indices: 3127818--3127855 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3127808 AAGTCCACAA
* *
3127818 CTCAGTGGCAATCTCTT
1 CTCAGCGGCAATCTCTG
3127835 CTCAGCGGCAATCTCTG
1 CTCAGCGGCAATCTCTG
3127852 CTCA
1 CTCA
3127856 AAGTCCACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.29
Consensus pattern (17 bp):
CTCAGCGGCAATCTCTG
Found at i:3127925 original size:31 final size:31
Alignment explanation
Indices: 3127835--3128031 Score: 240
Period size: 31 Copynumber: 6.3 Consensus size: 31
3127825 GCAATCTCTT
* *
3127835 CTCAGCGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3127866 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
3127898 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
*
3127929 CTCAGTGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3127960 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
*
3127992 CTCAGTGGC-AT-TTTGTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCT-TCTCAAAGTCCACGA
*
3128022 CTTAGTGGCA
1 CTCAGTGGCA
3128032 TTTTTTTCTT
Statistics
Matches: 147, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
30 30 0.20
31 65 0.44
32 46 0.31
33 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (31 bp):
CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
Found at i:3127996 original size:94 final size:94
Alignment explanation
Indices: 3127835--3128096 Score: 348
Period size: 94 Copynumber: 2.8 Consensus size: 94
3127825 GCAATCTCTT
*
3127835 CTCAGCGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
3127900 CAGTGGCAATCTCT-TCTCAAAGTCCACGA
66 CAGTGGCAAT-TCTGTCTCAAAGTCCACGA
3127929 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
*
3127994 CAGTGGC-ATTTTGTCTCAAAGTCCACGA
66 CAGTGGCAATTCTGTCTCAAAGTCCACGA
* * * * * * * * * * * *
3128022 CTTAGTGGCATTTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAA
1 CTCAGTGGCAATCTCTGC-TCAAAGTCCACGACTCAGTGGCATCTT-TTCCTTTAAAGTCCACGA
*
3128087 CTCCGTGGCA
64 CTCAGTGGCA
3128097 CCCTTTTAAA
Statistics
Matches: 149, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
92 2 0.01
93 30 0.20
94 93 0.62
95 24 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (94 bp):
CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
CAGTGGCAATTCTGTCTCAAAGTCCACGA
Found at i:3128012 original size:62 final size:62
Alignment explanation
Indices: 3127855--3128063 Score: 255
Period size: 62 Copynumber: 3.3 Consensus size: 62
3127845 ATCTCTGCTC
* * *
3127855 AAAGTCCACGACTCAGTGGCATCTTT-TCCTTTAAAGTCCACGACTCAGTGGCAATCTCTTC-TC
1 AAAGTCCACGACTCAGTGGCATCTTTGT-C-TCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTT
*
3127918 AAAGTCCACGACTCAGTGGCAATCTCTG-CTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGC-ATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTT-CTTT
* *
3127981 AAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTTAGTGGCATTTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCA-TCTTTTCTTT
* * *
3128043 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
3128064 CCTTGTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
61 9 0.07
62 69 0.53
63 47 0.36
64 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTTT
Found at i:3128086 original size:33 final size:34
Alignment explanation
Indices: 3128040--3128936 Score: 800
Period size: 34 Copynumber: 27.0 Consensus size: 34
3128030 CATTTTTTTC
*
3128040 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3128074 TTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
3128101 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3128135 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
3128163 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3128197 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3128225 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3128258 TTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3128291 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3128327 TTT-AAGTCCC-CAACTCCGTGGCACCTTCTT-C-
1 TTTAAAG-CCCACAACTCCGTGGCACCTTTTTCCT
*
3128358 TTTAAAGCCCACAACTTCGTGGCACTCTTTCTT-CT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTT-TTCCT
3128393 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3128427 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3128464 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3128498 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * *
3128534 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
* * *
3128568 TCTTAAAGCCCACACAAGTCGGTGGCAACCTTCTT-CT
1 T-TTAAAG-CC-CACAACTCCGTGGC-ACCTTTTTCCT
*
3128605 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
**
3128639 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCT
3128675 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* ****
3128709 TTTAAAGCCCACAACTCTGTGGCACC-TACGACT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * **
3128742 TTGT---G-GCAC-TCT-C-TTTC-CC-TTTT--T
1 TT-TAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3128766 A---AAGCCCACAACTCCGTGGCACCTTTTTCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3128797 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3128833 TTTCAAAG-CCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3128866 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* *
3128902 TTT-AAGTCCACAACTCCGTGGCATCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCA-CCTTTTTCCT
3128936 T
1 T
3128937 CCCAAAGCCC
Statistics
Matches: 716, Mismatches: 72, Indels: 150
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.00
24 4 0.01
25 2 0.00
26 4 0.01
27 35 0.05
28 41 0.06
29 6 0.01
30 3 0.00
31 7 0.01
32 23 0.03
33 145 0.20
34 160 0.22
35 136 0.19
36 77 0.11
37 55 0.08
38 13 0.02
39 4 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:3128236 original size:27 final size:27
Alignment explanation
Indices: 3128198--3128249 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
3128188 TTTTTTCATC
*
3128198 TTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
3128225 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
3128250 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.21
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:3128449 original size:70 final size:66
Alignment explanation
Indices: 3128034--3128931 Score: 827
Period size: 70 Copynumber: 13.6 Consensus size: 66
3128024 TAGTGGCATT
* *
3128034 TTTTTC-TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT-TTTCTTTTAAGCCCACAACTCCGTGGCA
3128097 CC
65 CC
* *
3128099 -----CTTTTAAAGCCCACAATTCCGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3128158 ACC
64 ACC
* * *
3128161 -----CTTTTAAAGCCCACAATTCTGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3128220 ACC
64 ACC
*
3128223 -----CGTTT-AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-TTTT-AAGCCCACAACTCCGTGGC
*
3128281 ACT
64 ACC
3128284 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCC-CAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAG-CCCACAACTCCGTGG
3128348 CACC
63 CACC
* *
3128352 TTCTTC-TTTAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTTTCAAAGCCCACAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTTT--AAGCCCACAACTCCGTGG
3128416 CACC
63 CACC
3128420 TTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGT
1 TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT--AAGCCCACAACTCCGT
*
3128485 GGCACT
61 GGCACC
*
3128491 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAGCCCACAACTCCGTGGC
*
3128556 ATC
64 ACC
* * * *
3128559 TTTCTCCCTTCTTAAAGCCCACACAAGTCGGTGGCAAC-CTTCTTCTTTTCAAAGCCCACAACTC
1 TTT-T-TCTT-TTAAAG-CC-CACAACTCCGTGGC-ACTCTTTTTCTTTT--AAGCCCACAACTC
3128623 CGTGGCACC
58 CGTGGCACC
* **
3128632 TTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTTTT--AAGCCCACAACTCCGTG
3128697 GCACC
62 GCACC
* **** * * **
3128702 TTTTTCTTTTAAAGCCCACAACTCTGTGGCAC-CTACGACTTTGT--G-GCAC-TCT-C-TTTC-
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT-TAAGCCCACAACTCCGTGGCA
3128759 CC
65 CC
*
3128761 ----T-TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCGTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-C-TTTTAAGCCCACAACTCCGTGGC
3128820 ACTC
64 AC-C
3128824 TTTTTCCCTTTTCAAAG-CCACAACTCCGTGGCACT-TTTTTCTTTTAAAGCCCACAACTCCGTG
1 TTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT-AAGCCCACAACTCCGTG
3128887 GCACTC
62 GCAC-C
*
3128893 TTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
1 TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
3128932 TCCTTCCCAA
Statistics
Matches: 723, Mismatches: 52, Indels: 113
0.81 0.06 0.13
Matches are distributed among these distances:
54 27 0.04
55 2 0.00
56 3 0.00
57 1 0.00
58 3 0.00
59 4 0.01
60 10 0.01
61 76 0.11
62 93 0.13
63 4 0.01
64 1 0.00
66 9 0.01
67 64 0.09
68 113 0.16
69 53 0.07
70 163 0.23
71 53 0.07
72 3 0.00
73 39 0.05
74 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.34
Consensus pattern (66 bp):
TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAGCCCACAACTCCGTGGCAC
C
Found at i:3128801 original size:34 final size:34
Alignment explanation
Indices: 3128744--3128936 Score: 239
Period size: 35 Copynumber: 5.5 Consensus size: 34
3128734 CTACGACTTT
*
3128744 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCAC-CT-TTTTCC-TTTTAAAGCCCACAACTCC
*
3128781 GTGGCACCTTTTTCCGTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
3128815 GTGGCACTCTTTTTCCCTTTTCAAAG-CCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCC
*
3128851 GTGGCA-CTTTTTTCTTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
*
3128884 GTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTTAAAGCCCACAACTCC
*
3128919 GTGGCATCTTTTTTCCTT
1 GTGGCA-CCTTTTTCCTT
3128937 CCCAAAGCCC
Statistics
Matches: 141, Mismatches: 7, Indels: 19
0.84 0.04 0.11
Matches are distributed among these distances:
32 4 0.03
33 21 0.15
34 35 0.25
35 41 0.29
36 29 0.21
37 11 0.08
ACGTcount: A:0.18, C:0.34, G:0.12, T:0.36
Consensus pattern (34 bp):
GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
Found at i:3128871 original size:69 final size:70
Alignment explanation
Indices: 3128744--3128933 Score: 296
Period size: 69 Copynumber: 2.7 Consensus size: 70
3128734 CTACGACTTT
* *
3128744 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCAC
1 GTGGCACTCTTTTTCCC-TTTTAAAGCCCACAACTCCGTGGCACCTTTTTTCGTTTAAAGCCCAC
3128809 AACTCC
65 AACTCC
*
3128815 GTGGCACTCTTTTTCCCTTTTCAAAG-CCACAACTCCGTGGCA-CTTTTTTCTTTTAAAGCCCAC
1 GTGGCACTCTTTTTCCCTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTTCGTTTAAAGCCCAC
3128878 AACTCC
65 AACTCC
* *
3128884 GTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCATCTTTTTTC
1 GTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTTC
3128934 CTTCCCAAAG
Statistics
Matches: 113, Mismatches: 3, Indels: 8
0.91 0.02 0.06
Matches are distributed among these distances:
67 3 0.03
68 16 0.14
69 54 0.48
70 20 0.18
71 20 0.18
ACGTcount: A:0.18, C:0.34, G:0.13, T:0.35
Consensus pattern (70 bp):
GTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTTCGTTTAAAGCCCACA
ACTCC
Found at i:3128889 original size:157 final size:157
Alignment explanation
Indices: 3128603--3128890 Score: 488
Period size: 157 Copynumber: 1.8 Consensus size: 157
3128593 CAACCTTCTT
* **
3128603 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCGTTTAAAGCCCACAACTCCGTGGCACTCTT
* *
3128668 TTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
66 TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
3128733 CCTACGACTTTGTGGCACTCTCTTTCC
131 CCTACGACTTTGTGGCACTCTCTTTCC
* *
3128760 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CGTTTAAAGCCCACAACTCCGTGGCACTCT
*
3128825 TTTTCCCTTTTCAAAG-CCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGC
65 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGC
3128889 AC
130 AC
3128891 TCTTTTTCCC
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
157 80 0.66
158 42 0.34
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (157 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCGTTTAAAGCCCACAACTCCGTGGCACTCTT
TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
CCTACGACTTTGTGGCACTCTCTTTCC
Found at i:3128970 original size:32 final size:31
Alignment explanation
Indices: 3128933--3129030 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 31
3128923 CATCTTTTTT
3128933 CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
*
3128964 CTCTTCCTAAAGCCCACACAAGTCGGTGGCAA
1 C-CTTCCCAAAGCCCACACAAGTCGGTGGCAA
3128996 CCTTCTTCCAAAGCCCACACAAGTCGGTGGCAA
1 CCTTC--CCAAAGCCCACACAAGTCGGTGGCAA
3129029 CC
1 CC
3129031 CCTCTAAGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
31 5 0.08
32 30 0.48
33 27 0.44
ACGTcount: A:0.28, C:0.38, G:0.18, T:0.16
Consensus pattern (31 bp):
CCTTCCCAAAGCCCACACAAGTCGGTGGCAA
Found at i:3128975 original size:103 final size:101
Alignment explanation
Indices: 3128765--3128981 Score: 260
Period size: 103 Copynumber: 2.1 Consensus size: 101
3128755 TTTCCCTTTT
*
3128765 TAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
** * *
3128830 CCTTTTCAAAGCCACAACTCCGTGGCACTTTTTTCTTT
66 CCTTCCCAAAGCCACAACTCCGTGGCAC-TTCTTC-TC
* *
3128868 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
1 TAAAGCCCACAACTCCGTGGCAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * *
3128932 TCCTTCCCAAAGCCCACACAAGTCGGTGGCAAC-TCTTC-C
65 CCCTTCCCAAAG--C-CACAACTCCGTGGC-ACTTCTTCTC
3128971 TAAAGCCCACA
1 TAAAGCCCACA
3128982 CAAGTCGGTG
Statistics
Matches: 99, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
103 50 0.51
104 30 0.30
105 5 0.05
106 12 0.12
107 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (101 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CCTTCCCAAAGCCACAACTCCGTGGCACTTCTTCTC
Found at i:3129014 original size:33 final size:32
Alignment explanation
Indices: 3128938--3129030 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
3128928 TTTTTCCTTC
3128938 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
3128969 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
3129003 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
3129031 CCTCTAAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:3129153 original size:49 final size:49
Alignment explanation
Indices: 3129042--3130187 Score: 1521
Period size: 49 Copynumber: 23.5 Consensus size: 49
3129032 CTCTAAGCCA
*
3129042 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3129094 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129143 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3129195 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129244 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3129296 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129345 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3129397 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
3129446 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3129495 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3129544 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3129593 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3129636 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129685 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129728 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3129780 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3129829 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129878 AATATAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3129927 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3129976 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3130019 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3130068 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3130111 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTTTAAGTCC
*
3130163 AATGTAGCTGGCCTTGAATCAGCAC
1 AATATAGCTGGCCTTGAATCAGCAC
3130188 GTTGACATCC
Statistics
Matches: 968, Mismatches: 87, Indels: 78
0.85 0.08 0.07
Matches are distributed among these distances:
43 156 0.16
45 4 0.00
47 2 0.00
49 554 0.57
50 12 0.01
51 6 0.01
52 234 0.24
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3129210 original size:101 final size:98
Alignment explanation
Indices: 3129042--3130249 Score: 1798
Period size: 101 Copynumber: 12.3 Consensus size: 98
3129032 CTCTAAGCCA
*
3129042 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3129107 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129143 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3129208 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129244 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3129309 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129345 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3129410 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3129446 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129511 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129544 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129609 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129636 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3129701 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129728 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3129793 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3129829 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129894 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129927 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129992 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3130019 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3130084 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3130111 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGG--CATTTT-CATCTTTAAGTCCAATGTAGCTGGCC
* * * * *
3130176 TTGAATCAGCACGTTGACATCCTTTTCTCATCTTTAGGCCC
63 TTGACTCAGCACATTGGCA-CC---T-TCATCTTTAAGTCC
* * *
3130217 AATATCGTTGGCCATGAATCAACATATTGGCAT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCAT
3130250 CTTTATCACT
Statistics
Matches: 1059, Mismatches: 25, Indels: 43
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.25
94 10 0.01
95 86 0.08
98 282 0.27
99 7 0.01
101 374 0.35
104 4 0.00
106 34 0.03
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3129652 original size:92 final size:92
Alignment explanation
Indices: 3129534--3130187 Score: 1065
Period size: 92 Copynumber: 6.9 Consensus size: 92
3129524 GCACCTTCAT
3129534 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
3129599 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
3129626 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3129691 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* *
3129718 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
3129783 GTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
63 GTAGCTGGCCTTGACTCAGCACATTGGCA----C
*
3129817 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATA
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3129882 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGACTCAGCACATTGGCA----C
3129915 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3129980 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGACTCAGCACATTGGCAC
3130009 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3130074 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* * *
3130101 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
*
3130166 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGACTCAGCAC
3130188 GTTGACATCC
Statistics
Matches: 538, Mismatches: 12, Indels: 21
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.49
94 9 0.02
95 81 0.15
98 141 0.26
99 4 0.01
101 41 0.08
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCAC
Found at i:3129996 original size:383 final size:383
Alignment explanation
Indices: 3129042--3130252 Score: 1999
Period size: 383 Copynumber: 3.1 Consensus size: 383
3129032 CTCTAAGCCA
* *
3129042 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
* *
3129107 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTG
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
*
3129172 GCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
128 GCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
* * *
3129237 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
184 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTA
*
3129302 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAG
246 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
3129367 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
305 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
3129432 TCATCTTTAAGTCC
370 TCATCTTTAAGTCC
*
3129446 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129511 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3129576 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3129641 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
3129706 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
3129771 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3129829 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3129894 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3129959 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3130024 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
3130089 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
* * * * * *
3130154 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTCTCATCTTTAGGCCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC---T-TCATCTTTAAGTCC
* * *
3130217 AATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3130253 TATCACTTTT
Statistics
Matches: 780, Mismatches: 22, Indels: 26
0.94 0.03 0.03
Matches are distributed among these distances:
383 470 0.60
384 2 0.00
385 1 0.00
387 1 0.00
388 45 0.06
389 44 0.06
390 3 0.00
392 40 0.05
394 1 0.00
398 45 0.06
399 3 0.00
401 91 0.12
402 3 0.00
404 31 0.04
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (383 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3130229 original size:54 final size:52
Alignment explanation
Indices: 3130101--3130237 Score: 148
Period size: 52 Copynumber: 2.6 Consensus size: 52
3130091 ACATTGGCAC
* * *
3130101 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCAT
1 CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
** * * *
3130153 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTCTCAT
1 CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CATTTTC-CAT
* * * *
3130207 CTTTAGGCCCAATATCGTTGGCCATGAATCA
1 CTTTAAGCCCAATATAGCTGGCCTTGAATCA
3130238 ACATATTGGC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
52 37 0.53
53 6 0.09
54 27 0.39
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (52 bp):
CTTTAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGACACATTTTCCAT
Found at i:3131159 original size:13 final size:13
Alignment explanation
Indices: 3131141--3131165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3131131 CATAAAATGT
3131141 TGTATCGATACAA
1 TGTATCGATACAA
3131154 TGTATCGATACA
1 TGTATCGATACA
3131166 TATTTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3131181 original size:32 final size:33
Alignment explanation
Indices: 3131121--3131186 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
3131111 TTCAACGATT
3131121 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
** *
3131154 TGTATCGATACAT-ATTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3131186 T
1 T
3131187 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3131248 original size:13 final size:13
Alignment explanation
Indices: 3131230--3131254 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3131220 ATTACTCACA
3131230 TGTATCGATACAT
1 TGTATCGATACAT
3131243 TGTATCGATACA
1 TGTATCGATACA
3131255 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3131391 original size:52 final size:52
Alignment explanation
Indices: 3131263--3131383 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
3131253 CACTGATCTT
*
3131263 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3131315 TGTATCGAGACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3131367 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3131384 ATAAATTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3131514 original size:13 final size:13
Alignment explanation
Indices: 3131496--3131526 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3131486 ACTTTTCACT
3131496 ATGTATCGATACA
1 ATGTATCGATACA
*
3131509 ATGTATTGATACA
1 ATGTATCGATACA
3131522 ATGTA
1 ATGTA
3131527 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3134861 original size:33 final size:33
Alignment explanation
Indices: 3134824--3134890 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3134814 TTCAACGATT
3134824 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3134857 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3134890 T
1 T
3134891 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3134862 original size:13 final size:13
Alignment explanation
Indices: 3134844--3134868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3134834 CATAAAATGT
3134844 TGTATCGATACAA
1 TGTATCGATACAA
3134857 TGTATCGATACA
1 TGTATCGATACA
3134869 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3134952 original size:13 final size:13
Alignment explanation
Indices: 3134934--3134958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3134924 ATTACTCACA
3134934 TGTATCGATACAT
1 TGTATCGATACAT
3134947 TGTATCGATACA
1 TGTATCGATACA
3134959 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3135095 original size:52 final size:52
Alignment explanation
Indices: 3134967--3135087 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
3134957 CACTGATCTT
*
3134967 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3135019 TGTATCGAGACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3135071 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3135088 ATAAATTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3135218 original size:13 final size:13
Alignment explanation
Indices: 3135200--3135230 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3135190 ACTTTTCACT
3135200 ATGTATCGATACA
1 ATGTATCGATACA
*
3135213 ATGTATTGATACA
1 ATGTATCGATACA
3135226 ATGTA
1 ATGTA
3135231 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3136299 original size:16 final size:16
Alignment explanation
Indices: 3136275--3136315 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3136265 TTTCATTCAT
* **
3136275 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAAAA
3136291 CAAGCAAAGTTAAAAA
1 CAAGCAAAGTTAAAAA
3136307 CAAGCAAAG
1 CAAGCAAAG
3136316 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAAAA
Found at i:3138566 original size:33 final size:33
Alignment explanation
Indices: 3138529--3138595 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3138519 TTCAACGATT
3138529 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3138562 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3138595 T
1 T
3138596 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3138567 original size:13 final size:13
Alignment explanation
Indices: 3138549--3138573 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3138539 CATAAAATGT
3138549 TGTATCGATACAA
1 TGTATCGATACAA
3138562 TGTATCGATACA
1 TGTATCGATACA
3138574 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3138657 original size:13 final size:13
Alignment explanation
Indices: 3138639--3138663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3138629 ATTACTCACA
3138639 TGTATCGATACAT
1 TGTATCGATACAT
3138652 TGTATCGATACA
1 TGTATCGATACA
3138664 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3138800 original size:52 final size:52
Alignment explanation
Indices: 3138672--3138792 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
3138662 CACTGATCTT
*
3138672 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3138724 TGTATCGAGACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3138776 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3138793 ATAAATTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3138923 original size:13 final size:13
Alignment explanation
Indices: 3138905--3138935 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3138895 ACTTTTCACT
3138905 ATGTATCGATACA
1 ATGTATCGATACA
*
3138918 ATGTATTGATACA
1 ATGTATCGATACA
3138931 ATGTA
1 ATGTA
3138936 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3140003 original size:16 final size:16
Alignment explanation
Indices: 3139979--3140019 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3139969 TTTCATTCAT
* **
3139979 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAAAA
3139995 CAAGCAAAGTTAAAAA
1 CAAGCAAAGTTAAAAA
3140011 CAAGCAAAG
1 CAAGCAAAG
3140020 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAAAA
Found at i:3143127 original size:15 final size:16
Alignment explanation
Indices: 3143092--3143131 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3143082 TTTCATTCAT
* *
3143092 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAGAA
3143108 CAAGCAAAGTTAA-AA
1 CAAGCAAAGTTAAGAA
3143123 CAAGCAAAG
1 CAAGCAAAG
3143132 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.55, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAGAA
Found at i:3145381 original size:33 final size:33
Alignment explanation
Indices: 3145344--3145410 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3145334 TTCAACGATT
3145344 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3145377 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3145410 T
1 T
3145411 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3145382 original size:13 final size:13
Alignment explanation
Indices: 3145364--3145388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3145354 CATAAAATGT
3145364 TGTATCGATACAA
1 TGTATCGATACAA
3145377 TGTATCGATACA
1 TGTATCGATACA
3145389 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3145472 original size:13 final size:13
Alignment explanation
Indices: 3145454--3145478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3145444 ATTACTCACA
3145454 TGTATCGATACAT
1 TGTATCGATACAT
3145467 TGTATCGATACA
1 TGTATCGATACA
3145479 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3145615 original size:52 final size:52
Alignment explanation
Indices: 3145487--3145607 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
3145477 CACTGATCTT
*
3145487 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
3145539 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3145591 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3145608 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3148876 original size:21 final size:21
Alignment explanation
Indices: 3148851--3148890 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3148841 GTCAGGAGCA
3148851 TCTCGTCATGCAATGAATGCC
1 TCTCGTCATGCAATGAATGCC
3148872 TCTCGTCATGCAATGAATG
1 TCTCGTCATGCAATGAATG
3148891 TCATTTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (21 bp):
TCTCGTCATGCAATGAATGCC
Found at i:3153901 original size:17 final size:17
Alignment explanation
Indices: 3153875--3153912 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3153865 AAGTCCACAA
* *
3153875 CTCAGTGGCAATCTCTT
1 CTCAGCGGCAATCTCTG
3153892 CTCAGCGGCAATCTCTG
1 CTCAGCGGCAATCTCTG
3153909 CTCA
1 CTCA
3153913 AAGTCCACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.29
Consensus pattern (17 bp):
CTCAGCGGCAATCTCTG
Found at i:3153982 original size:31 final size:31
Alignment explanation
Indices: 3153892--3154088 Score: 240
Period size: 31 Copynumber: 6.3 Consensus size: 31
3153882 GCAATCTCTT
* *
3153892 CTCAGCGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3153923 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
3153955 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
*
3153986 CTCAGTGGCAATCTCTGCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
* *
3154017 CTCAGTGGC-ATCTTTTCCTTTAAAGTCCACGA
1 CTCAGTGGCAATCTCTT-C-TCAAAGTCCACGA
*
3154049 CTCAGTGGC-AT-TTTGTCTCAAAGTCCACGA
1 CTCAGTGGCAATCTCT-TCTCAAAGTCCACGA
*
3154079 CTTAGTGGCA
1 CTCAGTGGCA
3154089 TTTTTTTCTT
Statistics
Matches: 147, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
30 30 0.20
31 65 0.44
32 46 0.31
33 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (31 bp):
CTCAGTGGCAATCTCTTCTCAAAGTCCACGA
Found at i:3154053 original size:94 final size:94
Alignment explanation
Indices: 3153892--3154153 Score: 348
Period size: 94 Copynumber: 2.8 Consensus size: 94
3153882 GCAATCTCTT
*
3153892 CTCAGCGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
3153957 CAGTGGCAATCTCT-TCTCAAAGTCCACGA
66 CAGTGGCAAT-TCTGTCTCAAAGTCCACGA
3153986 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
1 CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
*
3154051 CAGTGGC-ATTTTGTCTCAAAGTCCACGA
66 CAGTGGCAATTCTGTCTCAAAGTCCACGA
* * * * * * * * * * * *
3154079 CTTAGTGGCATTTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAA
1 CTCAGTGGCAATCTCTGC-TCAAAGTCCACGACTCAGTGGCATCTT-TTCCTTTAAAGTCCACGA
*
3154144 CTCCGTGGCA
64 CTCAGTGGCA
3154154 CCCTTTTAAA
Statistics
Matches: 149, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
92 2 0.01
93 30 0.20
94 93 0.62
95 24 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (94 bp):
CTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACT
CAGTGGCAATTCTGTCTCAAAGTCCACGA
Found at i:3154069 original size:62 final size:62
Alignment explanation
Indices: 3153912--3154120 Score: 255
Period size: 62 Copynumber: 3.3 Consensus size: 62
3153902 ATCTCTGCTC
* * *
3153912 AAAGTCCACGACTCAGTGGCATCTTT-TCCTTTAAAGTCCACGACTCAGTGGCAATCTCTTC-TC
1 AAAGTCCACGACTCAGTGGCATCTTTGT-C-TCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTT
*
3153975 AAAGTCCACGACTCAGTGGCAATCTCTG-CTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGC-ATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTT-CTTT
* *
3154038 AAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTTAGTGGCATTTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCA-TCTTTTCTTT
* * *
3154100 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
3154121 CCTTGTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
61 9 0.07
62 69 0.53
63 47 0.36
64 5 0.04
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTTTGTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTTT
Found at i:3154143 original size:33 final size:34
Alignment explanation
Indices: 3154097--3154990 Score: 817
Period size: 34 Copynumber: 26.9 Consensus size: 34
3154087 CATTTTTTTC
*
3154097 TTTAAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3154131 TTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * *
3154158 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3154192 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * * *
3154220 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3154254 CTTT-AAGTCCACAACTCCGTGGCA-C-----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3154282 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
3154315 TTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3154348 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3154384 TTT-AAGTCCC-CAACTCCGTGGCACCTTCTT-CT
1 TTTAAAG-CCCACAACTCCGTGGCACCTTTTTCCT
*
3154416 TTTAAAGCCCACAACTTCGTGGCACTCTTTCTT-CT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTT-TTCCT
3154451 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3154485 GTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 -TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3154522 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3154556 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * *
3154592 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
* * *
3154626 TCTTAAAGCCCACACAAGTCGGTGGCAACCTTCTT-CT
1 T-TTAAAG-CC-CACAACTCCGTGGC-ACCTTTTTCCT
*
3154663 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
**
3154697 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C-TTTTTCCT
3154733 TTTCAAAGCCCACAACTCCGTGGCACCTTTTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* ****
3154767 TTTAAAGCCCACAACTCTGTGGCACC-TACGACT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* * **
3154800 TTGT---G-GCAC-TCT-C-TTTC-CC-TTTT--T
1 TT-TAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
3154824 A---AAGCCCACAACTCCGTGGCACCTTTTTCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
3154855 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
*
3154891 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
3154925 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* *
3154961 TTT-AAGTCCACAACTCCGTGGCATCTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTT
3154991 TTCCTTCCCA
Statistics
Matches: 716, Mismatches: 72, Indels: 144
0.77 0.08 0.15
Matches are distributed among these distances:
23 1 0.00
24 4 0.01
25 2 0.00
26 4 0.01
27 35 0.05
28 41 0.06
29 6 0.01
30 3 0.00
31 1 0.00
32 10 0.01
33 158 0.22
34 161 0.22
35 141 0.20
36 60 0.08
37 72 0.10
38 13 0.02
39 4 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:3154204 original size:34 final size:34
Alignment explanation
Indices: 3154006--3154791 Score: 646
Period size: 33 Copynumber: 23.6 Consensus size: 34
3153996 ATCTCTGCTC
* * * *
3154006 AAAGTCCACGACTCAGTGGCA-TCTTTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * *
3154038 AAAGTCCACGACTCAGTGGCA-TTTTGTCTC---
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * **
3154068 AAAGTCCACGACTTAGTGGCA-TTTTTT-TCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3154100 AAAGCCCACAACTCCGTGGCACCTTGTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * *
3154133 TAAGTCCACAACTCCGTGGCAC-----CCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154161 AAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
* *
3154196 -AAGTCCACAACTCCGTGGCAC-----CCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3154223 AAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
*
3154258 -AAGTCCACAACTCCGTGGCAC------C-CGTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
* *
3154285 -AAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
3154318 AAAGCCCACAACTCCGTGGCACTTTTTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154351 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTCTTT
* * *
3154386 TAAGTCCC-CAACTCCGTGGCACCTTCTTCT-TTT
1 AAAG-CCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154419 AAAGCCCACAACTTCGTGGCACTCTTTCTTCT-TTT
1 AAAGCCCACAACTCCGTGGCACT-TTT-TTCTCTTT
* *
3154454 CAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154489 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTC-TTT
3154525 CAAAGCCCACAACTCCGTGGCACTTTTTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154559 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTCTTT
* * * *
3154594 TAAGTCCACAACTCCGTGGCA-TCTTTCTCCCTTCTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCTC-T-TT
* * * *
3154630 AAAGCCCACACAAGTCGGTGGCAACCTTCTTCT-TTT
1 AAAG-CC-CACAACTCCGTGGC-ACTTTTTTCTCTTT
* *
3154666 CAAAGCCCACAACTCCGTGGCACCTTCTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
**
3154700 AAAGCCCACAACTTTGTGGCACTCTTTTT-TCCTTTT
1 AAAGCCCACAACTCCGTGGCACT-TTTTTCT-C-TTT
*
3154736 CAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTT
1 -AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
*
3154770 AAAGCCCACAACTCTGTGGCAC
1 AAAGCCCACAACTCCGTGGCAC
3154792 CTACGACTTT
Statistics
Matches: 630, Mismatches: 67, Indels: 113
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.00
27 26 0.04
28 43 0.07
29 3 0.00
30 25 0.04
32 46 0.07
33 145 0.23
34 144 0.23
35 80 0.13
36 50 0.08
37 50 0.08
38 12 0.02
39 5 0.01
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
Found at i:3154293 original size:27 final size:27
Alignment explanation
Indices: 3154255--3154306 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
3154245 TTTTTTCATC
*
3154255 TTTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGCCCACAACTCCGTGGCACCCG
3154282 TTTAAGCCCACAACTCCGTGGCACC
1 TTTAAGCCCACAACTCCGTGGCACC
3154307 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.21
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCG
Found at i:3154507 original size:70 final size:66
Alignment explanation
Indices: 3154091--3154990 Score: 845
Period size: 70 Copynumber: 13.6 Consensus size: 66
3154081 TAGTGGCATT
* *
3154091 TTTTTC-TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTT-TTTCTTTTAAGCCCACAACTCCGTGGCA
3154154 CC
65 CC
* *
3154156 -----CTTTTAAAGCCCACAATTCCGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3154215 ACC
64 ACC
* * *
3154218 -----CTTTTAAAGCCCACAATTCTGTGGCACT-TTTTTCATCTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-T-TTTAAGCCCACAACTCCGTGGC
3154277 ACC
64 ACC
*
3154280 -----CGTTT-AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-TTTT-AAGCCCACAACTCCGTGGC
*
3154338 ACT
64 ACC
3154341 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCC-CAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAG-CCCACAACTCCGTGG
3154405 CACC
63 CACC
* *
3154409 TTCTTCTTTTAAAGCCCACAACTTCGTGGCACTCTTTCTTCTTTTCAAAGCCCACAACTCCGTGG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTT-TTCTTTT--AAGCCCACAACTCCGTGG
3154474 CACC
63 CACC
3154478 TTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGT
1 TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT--AAGCCCACAACTCCGT
*
3154543 GGCACT
61 GGCACC
*
3154549 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTTAAGCCCACAACTCCGTGGC
*
3154614 ATC
64 ACC
* * * *
3154617 TTTCTCCCTTCTTAAAGCCCACACAAGTCGGTGGCAAC-CTTCTTCTTTTCAAAGCCCACAACTC
1 TTT-T-TCTT-TTAAAG-CC-CACAACTCCGTGGC-ACTCTTTTTCTTTT--AAGCCCACAACTC
3154681 CGTGGCACC
58 CGTGGCACC
* **
3154690 TTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTG
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTTTT--AAGCCCACAACTCCGTG
3154755 GCACC
62 GCACC
* **** * * **
3154760 TTTTTCTTTTAAAGCCCACAACTCTGTGGCAC-CTACGACTTTGT--G-GCAC-TCT-C-TTTC-
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT-TAAGCCCACAACTCCGTGGCA
3154817 CC
65 CC
*
3154819 ----T-TTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCGTTTAAAGCCCACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-C-TTTTAAGCCCACAACTCCGTGGC
3154878 ACTC
64 AC-C
3154882 TTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACT-TTTTTCTTTTAAAGCCCACAACTCCGTG
1 TTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT-AAGCCCACAACTCCGTG
3154946 GCACTC
62 GCAC-C
*
3154952 TTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTTT
1 TTTTT--CTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
3154991 TTCCTTCCCA
Statistics
Matches: 726, Mismatches: 53, Indels: 109
0.82 0.06 0.12
Matches are distributed among these distances:
54 27 0.04
55 2 0.00
56 3 0.00
57 1 0.00
58 3 0.00
59 4 0.01
60 10 0.01
61 76 0.10
62 93 0.13
63 4 0.01
64 1 0.00
66 4 0.01
67 34 0.05
68 121 0.17
69 46 0.06
70 177 0.24
71 76 0.10
72 3 0.00
73 39 0.05
74 2 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.34
Consensus pattern (66 bp):
TTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTAAGCCCACAACTCCGTGGCAC
C
Found at i:3154864 original size:34 final size:34
Alignment explanation
Indices: 3154802--3154990 Score: 247
Period size: 35 Copynumber: 5.4 Consensus size: 34
3154792 CTACGACTTT
*
3154802 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCAC-CT-TTTTCC-TTTTAAAGCCCACAACTCC
*
3154839 GTGGCACCTTTTTCCGTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
3154873 GTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTT-AAAGCCCACAACTCC
*
3154910 GTGGCA-CTTTTTTCTTTTAAAGCCCACAACTCC
1 GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
*
3154943 GTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCC
1 GTGGCAC-CTTTTT-CCTTTTAAAGCCCACAACTCC
*
3154978 GTGGCATCTTTTT
1 GTGGCACCTTTTT
3154991 TTCCTTCCCA
Statistics
Matches: 139, Mismatches: 7, Indels: 15
0.86 0.04 0.09
Matches are distributed among these distances:
33 21 0.15
34 36 0.26
35 42 0.30
36 12 0.09
37 28 0.20
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.35
Consensus pattern (34 bp):
GTGGCACCTTTTTCCTTTTAAAGCCCACAACTCC
Found at i:3155036 original size:32 final size:32
Alignment explanation
Indices: 3154998--3155089 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 32
3154988 TTTTTCCTTC
3154998 CCAAAGCCCACACAAGTCGGTGGCAAC-TCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
3155029 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAA-CTTCTT
3155063 CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCAAAGCCCACACAAGTCGGTGGCAAC
3155090 CCCTCTAAGC
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 2 0.03
32 25 0.43
33 25 0.43
34 6 0.10
ACGTcount: A:0.29, C:0.36, G:0.20, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
Found at i:3155037 original size:104 final size:102
Alignment explanation
Indices: 3154823--3155041 Score: 264
Period size: 105 Copynumber: 2.1 Consensus size: 102
3154813 TTTCCCTTTT
*
3154823 TAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
** * *
3154888 CCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTT
66 CCTTCCCAAAGCCCACAACTCCGTGGCAC-TTCTTC-TC
* *
3154927 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
1 TAAAGCCCACAACTCCGTGGCAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTC-TTTT
* * *
3154991 TTCCTTCCCAAAGCCCACACAAGTCGGTGGCAAC-TCTTC-C
64 TCCCTTCCCAAAG-CC-CACAACTCCGTGGC-ACTTCTTCTC
3155031 TAAAGCCCACA
1 TAAAGCCCACA
3155042 CAAGTCGGTG
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
104 36 0.36
105 44 0.44
106 6 0.06
107 12 0.12
108 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (102 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CCTTCCCAAAGCCCACAACTCCGTGGCACTTCTTCTC
Found at i:3155074 original size:33 final size:32
Alignment explanation
Indices: 3154998--3155090 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
3154988 TTTTTCCTTC
3154998 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
3155029 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
3155063 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
3155091 CCTCTAAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:3155213 original size:49 final size:49
Alignment explanation
Indices: 3155102--3156247 Score: 1521
Period size: 49 Copynumber: 23.5 Consensus size: 49
3155092 CTCTAAGCCA
*
3155102 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3155154 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155203 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
3155255 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155304 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3155356 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155405 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3155457 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
3155506 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3155555 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3155604 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3155653 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3155696 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155745 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155788 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
3155840 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3155889 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155938 AATATAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3155987 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3156036 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3156079 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3156128 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
3156171 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTTTAAGTCC
*
3156223 AATGTAGCTGGCCTTGAATCAGCAC
1 AATATAGCTGGCCTTGAATCAGCAC
3156248 GTTGACATCC
Statistics
Matches: 968, Mismatches: 87, Indels: 78
0.85 0.08 0.07
Matches are distributed among these distances:
43 156 0.16
45 4 0.00
47 2 0.00
49 554 0.57
50 12 0.01
51 6 0.01
52 234 0.24
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3155270 original size:101 final size:98
Alignment explanation
Indices: 3155102--3156310 Score: 1791
Period size: 101 Copynumber: 12.3 Consensus size: 98
3155092 CTCTAAGCCA
*
3155102 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3155167 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155203 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
3155268 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155304 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3155369 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155405 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3155470 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3155506 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3155571 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155604 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3155669 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155696 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3155761 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155788 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TTTT-CATCTTTAAGTCCAATGTAGCTGGCC
3155853 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3155889 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3155954 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155987 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3156052 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3156079 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
3156144 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
3156171 AATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGG--CATTTT-CATCTTTAAGTCCAATGTAGCTGGCC
* * * * *
3156236 TTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCC
63 TTGACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCC
* * *
3156278 AATATCGTTGGCCATGAATCAACATATTGGCAT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCAT
3156311 CTTTATCACT
Statistics
Matches: 1059, Mismatches: 25, Indels: 44
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.25
94 10 0.01
95 86 0.08
98 282 0.27
99 7 0.01
101 374 0.35
105 4 0.00
107 34 0.03
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATTTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3155712 original size:92 final size:92
Alignment explanation
Indices: 3155594--3156247 Score: 1065
Period size: 92 Copynumber: 6.9 Consensus size: 92
3155584 GCACCTTCAT
3155594 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
3155659 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
3155686 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3155751 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* *
3155778 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
3155843 GTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
63 GTAGCTGGCCTTGACTCAGCACATTGGCA----C
*
3155877 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATA
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3155942 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGACTCAGCACATTGGCA----C
3155975 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
3156040 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGACTCAGCACATTGGCAC
3156069 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
3156134 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* * *
3156161 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
*
3156226 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGACTCAGCAC
3156248 GTTGACATCC
Statistics
Matches: 538, Mismatches: 12, Indels: 21
0.94 0.02 0.04
Matches are distributed among these distances:
92 262 0.49
94 9 0.02
95 81 0.15
98 141 0.26
99 4 0.01
101 41 0.08
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCAC
Found at i:3156056 original size:383 final size:383
Alignment explanation
Indices: 3155102--3156313 Score: 1992
Period size: 383 Copynumber: 3.1 Consensus size: 383
3155092 CTCTAAGCCA
* *
3155102 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
* *
3155167 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTG
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
*
3155232 GCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
128 GCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
* * *
3155297 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
184 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTA
*
3155362 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAG
246 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAG
3155427 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
305 CATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCT
3155492 TCATCTTTAAGTCC
370 TCATCTTTAAGTCC
*
3155506 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3155571 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3155636 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3155701 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
3155766 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
3155831 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
3155889 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATATAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
3155954 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
3156019 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
131 TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
3156084 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
196 CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
3156149 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATC
261 GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
* * * * * *
3156214 TTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAGGCCC
326 TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCC
* * *
3156278 AATATCGTTGGCCATGAATCAACATATTGGCATCTT
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
3156314 TATCACTTTT
Statistics
Matches: 780, Mismatches: 22, Indels: 27
0.94 0.03 0.03
Matches are distributed among these distances:
383 470 0.60
384 2 0.00
385 1 0.00
388 1 0.00
389 89 0.11
390 3 0.00
392 40 0.05
394 1 0.00
398 45 0.06
399 3 0.00
401 91 0.12
402 3 0.00
404 31 0.04
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (383 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
TCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATAT
CGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
GCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATC
TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:3157220 original size:33 final size:33
Alignment explanation
Indices: 3157183--3157249 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3157173 TTCAACGATT
3157183 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3157216 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3157249 T
1 T
3157250 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3157221 original size:13 final size:13
Alignment explanation
Indices: 3157203--3157227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3157193 CATAAAATGT
3157203 TGTATCGATACAA
1 TGTATCGATACAA
3157216 TGTATCGATACA
1 TGTATCGATACA
3157228 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3157311 original size:13 final size:13
Alignment explanation
Indices: 3157293--3157317 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3157283 ATTACTCACA
3157293 TGTATCGATACAT
1 TGTATCGATACAT
3157306 TGTATCGATACA
1 TGTATCGATACA
3157318 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3157454 original size:52 final size:52
Alignment explanation
Indices: 3157326--3157446 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
3157316 CACTGATCTT
*
3157326 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3157378 TGTATCGAGACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3157430 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3157447 ATAAATTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 63 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3157577 original size:13 final size:13
Alignment explanation
Indices: 3157559--3157589 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3157549 ACTTTTCACT
3157559 ATGTATCGATACA
1 ATGTATCGATACA
*
3157572 ATGTATTGATACA
1 ATGTATCGATACA
3157585 ATGTA
1 ATGTA
3157590 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3158658 original size:16 final size:16
Alignment explanation
Indices: 3158634--3158674 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
3158624 TTTCATTCAT
* **
3158634 CAAGGAAAGTTAAGTA
1 CAAGCAAAGTTAAAAA
3158650 CAAGCAAAGTTAAAAA
1 CAAGCAAAGTTAAAAA
3158666 CAAGCAAAG
1 CAAGCAAAG
3158675 AAACAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.20, T:0.12
Consensus pattern (16 bp):
CAAGCAAAGTTAAAAA
Done.