Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1500
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77835
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Found at i:11629 original size:14 final size:14
Alignment explanation
Indices: 11610--11660 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
11600 TATAGTAAAA
11610 TATATTTTAATTTT
1 TATATTTTAATTTT
*
11624 TATATTATTAAATTT
1 TATATT-TTAATTTT
* *
11639 AATATTTTAATCTT
1 TATATTTTAATTTT
11653 TATATTTT
1 TATATTTT
11661 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 19 0.61
15 12 0.39
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TATATTTTAATTTT
Found at i:25154 original size:58 final size:59
Alignment explanation
Indices: 25089--25206 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 59
25079 AATGCCATGC
* *
25089 TATGTCTTGGAATTAGAAATTACTTGTTTCTGTATTTGC-AGGCATAAACAGATCCTGT
1 TATGTCTTAGAATTAGAAATTACTTGTTTCTGTATTGGCGAGGCATAAACAGATCCTGT
* *
25147 TATGTCTTAGAATTGGAAATTACTTGTTTCTGTATTGGCGGGGGCATAAACAGATCCTGT
1 TATGTCTTAGAATTAGAAATTACTTGTTTCTGTATTGGC-GAGGCATAAACAGATCCTGT
25207 AACCGGGGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 36 0.67
60 18 0.33
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (59 bp):
TATGTCTTAGAATTAGAAATTACTTGTTTCTGTATTGGCGAGGCATAAACAGATCCTGT
Found at i:35418 original size:20 final size:20
Alignment explanation
Indices: 35393--35433 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
35383 GGGGCCGTCA
35393 TTTTTTATTGTTATTAATTT
1 TTTTTTATTGTTATTAATTT
*
35413 TTTTTTATTGTTTTTAATTT
1 TTTTTTATTGTTATTAATTT
35433 T
1 T
35434 GTTCTTCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTTTATTGTTATTAATTT
Found at i:36135 original size:240 final size:239
Alignment explanation
Indices: 35707--36161 Score: 646
Period size: 240 Copynumber: 1.9 Consensus size: 239
35697 CTCATATATC
* ** * *
35707 ATCCGCTTGTAAACTGTTGCCTTTTTTTATTATTATTATTAATTTTGTTTTTCCTATATGTTGAT
1 ATCCACTTGTAAACTGAGGCCTCTTTTTATTATGATTATTAATTTTGTTTTTCCTATATGTTGAT
*
35772 ATCAATTTTGTTTATGATTGCTATATATCTTAATTTTTCCTGTAAATTTACACATCTGTAGAACC
66 ATCAATTTTGTTTATGATTGCTATATATCTTAATTTTTCCTATAAATTTACACATCTGTAGAACC
* * *
35837 ACCTTTCTACTATTGTGTGTTCAATGATTTGAGAAGGGGCTTGAAATATCCAAAGTTCCTACTTT
131 AACTTTCTACTAATGTGTGATCAATGATTTGAGAAGGGGCTTGAAATATCCAAAGTTCCTACTTT
35902 CATGA-TTTGAACAGTTATTTTCTTCCGACCCATCCTATATAGT
196 CATGATTTTGAACAGTTATTTTCTTCCGACCCATCCTATATAGT
* *
35945 ATCCACTTGTAAACTGGAGGCCTCTTTTT-TTATGATTATTAATTTTGTTTTTCCTATCTTTTGA
1 ATCCACTTGTAAACT-GAGGCCTCTTTTTATTATGATTATTAATTTTGTTTTTCCTATATGTTGA
** * * **
36009 TATCTTTTTTTTTGTTTTTGATTGCTATATATCTTAA-TTTTCCTATAAGTTTACGTATCTGTAG
65 TATC---AATTTTGTTTATGATTGCTATATATCTTAATTTTTCCTATAAATTTACACATCTGTAG
* * * *
36073 AACCAACTTTCTCCTAATGTGTGATCAATGATTTGAGGAGGGGCTTGAGATATCCGAAGTTCCTA
127 AACCAACTTTCTACTAATGTGTGATCAATGATTTGAGAAGGGGCTTGAAATATCCAAAGTTCCTA
* *
36138 TTTTCATGATTTTGAGCAGTTATT
192 CTTTCATGATTTTGAACAGTTATT
36162 GATTTTCTTC
Statistics
Matches: 189, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
238 50 0.26
239 10 0.05
240 89 0.47
241 40 0.21
ACGTcount: A:0.24, C:0.15, G:0.14, T:0.47
Consensus pattern (239 bp):
ATCCACTTGTAAACTGAGGCCTCTTTTTATTATGATTATTAATTTTGTTTTTCCTATATGTTGAT
ATCAATTTTGTTTATGATTGCTATATATCTTAATTTTTCCTATAAATTTACACATCTGTAGAACC
AACTTTCTACTAATGTGTGATCAATGATTTGAGAAGGGGCTTGAAATATCCAAAGTTCCTACTTT
CATGATTTTGAACAGTTATTTTCTTCCGACCCATCCTATATAGT
Found at i:37679 original size:25 final size:25
Alignment explanation
Indices: 37623--37684 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 25
37613 CTATAGGTTC
37623 GAATTCTTTTGAAAAAAAAAATTTTG
1 GAATTCTTTTG-AAAAAAAAATTTTG
37649 GAATTCTTTTG-AAAAAAAATTTCTG
1 GAATTCTTTTGAAAAAAAAATTT-TG
*
37674 GGATTCCTTTT
1 GAATT-CTTTT
37685 CTCTCTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 11 0.33
25 6 0.18
26 16 0.48
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (25 bp):
GAATTCTTTTGAAAAAAAAATTTTG
Found at i:37729 original size:31 final size:31
Alignment explanation
Indices: 37694--37791 Score: 101
Period size: 31 Copynumber: 3.2 Consensus size: 31
37684 TCTCTCTGAA
*
37694 TCAGCTTTTATCGTTGATTTATTTCATTCAG
1 TCAGCTTTTATCGCTGATTTATTTCATTCAG
* * * *
37725 TCAGCCTTCAGT-GCTGATTGATTTTATT-AG
1 TCAGCTTTTA-TCGCTGATTTATTTCATTCAG
* *
37755 ATCAGCTTTTATCGCTAAATTATTTCATTCAG
1 -TCAGCTTTTATCGCTGATTTATTTCATTCAG
37787 TCAGC
1 TCAGC
37792 CTTCATTACT
Statistics
Matches: 52, Mismatches: 11, Indels: 8
0.73 0.15 0.11
Matches are distributed among these distances:
30 3 0.06
31 46 0.88
32 3 0.06
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.45
Consensus pattern (31 bp):
TCAGCTTTTATCGCTGATTTATTTCATTCAG
Found at i:37790 original size:62 final size:62
Alignment explanation
Indices: 37693--37811 Score: 193
Period size: 62 Copynumber: 1.9 Consensus size: 62
37683 TTCTCTCTGA
* * * *
37693 ATCAGCTTTTATCGTTGATTTATTTCATTCAGTCAGCCTTCAGTGCTGATTGATTTTATTAG
1 ATCAGCTTTTATCGCTAAATTATTTCATTCAGTCAGCCTTCAGTACTGATTGATTTTATTAG
*
37755 ATCAGCTTTTATCGCTAAATTATTTCATTCAGTCAGCCTTCATTACTGATTGATTTT
1 ATCAGCTTTTATCGCTAAATTATTTCATTCAGTCAGCCTTCAGTACTGATTGATTTT
37812 TTTGATAGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 52 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (62 bp):
ATCAGCTTTTATCGCTAAATTATTTCATTCAGTCAGCCTTCAGTACTGATTGATTTTATTAG
Found at i:39573 original size:18 final size:18
Alignment explanation
Indices: 39550--39585 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
39540 CAACACCGAC
39550 CCATGTGTCCAAACCTGA
1 CCATGTGTCCAAACCTGA
*
39568 CCATGTGTCCGAACCTGA
1 CCATGTGTCCAAACCTGA
39586 GTCTCCAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (18 bp):
CCATGTGTCCAAACCTGA
Found at i:39624 original size:42 final size:42
Alignment explanation
Indices: 39565--39645 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
39555 TGTCCAAACC
* *
39565 TGACCATGTGTCCGAACCTGAGTCTCCAGAATTTGAACCGAT
1 TGACCATGTGTCCGAACCTGAATCTCCAGAATCTGAACCGAT
*
39607 TGACCATGTGTTCGAACCTGAATCTCCAGAATCTGAACC
1 TGACCATGTGTCCGAACCTGAATCTCCAGAATCTGAACC
39646 CATTCTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (42 bp):
TGACCATGTGTCCGAACCTGAATCTCCAGAATCTGAACCGAT
Found at i:43570 original size:45 final size:45
Alignment explanation
Indices: 43520--43609 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
43510 TGGGAGCACA
*
43520 TAAGTCTAGGGAAAGTAAATTTAATCCAAACATAAAGATATATAT
1 TAAGTCTAGGAAAAGTAAATTTAATCCAAACATAAAGATATATAT
43565 TAAGTCTAGGAAAAGTAAATTTAATCCAAACATAAAGATATATAT
1 TAAGTCTAGGAAAAGTAAATTTAATCCAAACATAAAGATATATAT
43610 ATATATAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (45 bp):
TAAGTCTAGGAAAAGTAAATTTAATCCAAACATAAAGATATATAT
Found at i:43886 original size:28 final size:29
Alignment explanation
Indices: 43855--43915 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
43845 AATAGCATTT
*
43855 TTTTAAATTAA-TTATCAAAATATTTTTA
1 TTTTAAAATAATTTATCAAAATATTTTTA
*
43883 TTTTAAAATAATTTATCAAAATGTTTTTA
1 TTTTAAAATAATTTATCAAAATATTTTTA
43912 TTTT
1 TTTT
43916 TTGTTATGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (29 bp):
TTTTAAAATAATTTATCAAAATATTTTTA
Found at i:44993 original size:2 final size:2
Alignment explanation
Indices: 44988--45028 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
44978 ATATACTTAC
44988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45029 AACACACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45846 original size:25 final size:27
Alignment explanation
Indices: 45795--45847 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
45785 TTAAAACAAC
**
45795 ATATTTTAATAATTTATTTAATTAATT
1 ATATTTTAATAATTTATTTAAAAAATT
*
45822 ATATTTT-A-AATTTTTTTAAAAAATT
1 ATATTTTAATAATTTATTTAAAAAATT
45847 A
1 A
45848 ATAATAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 15 0.65
26 1 0.04
27 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATATTTTAATAATTTATTTAAAAAATT
Found at i:56687 original size:2 final size:2
Alignment explanation
Indices: 56680--56705 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
56670 TCACTGTGCG
56680 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
56706 CATGGAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:64018 original size:15 final size:16
Alignment explanation
Indices: 63981--64017 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
63971 TTTTTTCACT
63981 TTTTTTAAGCTTTACA
1 TTTTTTAAGCTTTACA
63997 TTTTTTAAGCTTTACA
1 TTTTTTAAGCTTTACA
64013 TTTTT
1 TTTTT
64018 ATTGCTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.11, G:0.05, T:0.62
Consensus pattern (16 bp):
TTTTTTAAGCTTTACA
Found at i:66939 original size:260 final size:260
Alignment explanation
Indices: 66478--66995 Score: 1036
Period size: 260 Copynumber: 2.0 Consensus size: 260
66468 TTGCATTTTA
66478 AGCATAGTGCAAAAGGCACTTTAAATCATCTGTTTGATTATTTTATGAGTATGTTATGAAGGGTT
1 AGCATAGTGCAAAAGGCACTTTAAATCATCTGTTTGATTATTTTATGAGTATGTTATGAAGGGTT
66543 ATCTTTGTTTCTTTTGTGCAAGTAATGAATTCTAGCATTCTGCTGCAAAGCGGTCCTGTGAACAA
66 ATCTTTGTTTCTTTTGTGCAAGTAATGAATTCTAGCATTCTGCTGCAAAGCGGTCCTGTGAACAA
66608 TCGTAGTGGAAAGAAAAATCTTGTCTTGTCTGCATGGGGTGATGATTCCCTGCTTTCGGAGGAGT
131 TCGTAGTGGAAAGAAAAATCTTGTCTTGTCTGCATGGGGTGATGATTCCCTGCTTTCGGAGGAGT
66673 ATGTAAATCCACATTACAATTCAAGTAGTTATCAATTATATAGTGAGCAAACACAACAAAATTCT
196 ATGTAAATCCACATTACAATTCAAGTAGTTATCAATTATATAGTGAGCAAACACAACAAAATTCT
66738 AGCATAGTGCAAAAGGCACTTTAAATCATCTGTTTGATTATTTTATGAGTATGTTATGAAGGGTT
1 AGCATAGTGCAAAAGGCACTTTAAATCATCTGTTTGATTATTTTATGAGTATGTTATGAAGGGTT
66803 ATCTTTGTTTCTTTTGTGCAAGTAATGAATTCTAGCATTCTGCTGCAAAGCGGTCCTGTGAACAA
66 ATCTTTGTTTCTTTTGTGCAAGTAATGAATTCTAGCATTCTGCTGCAAAGCGGTCCTGTGAACAA
66868 TCGTAGTGGAAAGAAAAATCTTGTCTTGTCTGCATGGGGTGATGATTCCCTGCTTTCGGAGGAGT
131 TCGTAGTGGAAAGAAAAATCTTGTCTTGTCTGCATGGGGTGATGATTCCCTGCTTTCGGAGGAGT
66933 ATGTAAATCCACATTACAATTCAAGTAGTTATCAATTATATAGTGAGCAAACACAACAAAATT
196 ATGTAAATCCACATTACAATTCAAGTAGTTATCAATTATATAGTGAGCAAACACAACAAAATT
66996 TGGTAAACTC
Statistics
Matches: 258, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
260 258 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (260 bp):
AGCATAGTGCAAAAGGCACTTTAAATCATCTGTTTGATTATTTTATGAGTATGTTATGAAGGGTT
ATCTTTGTTTCTTTTGTGCAAGTAATGAATTCTAGCATTCTGCTGCAAAGCGGTCCTGTGAACAA
TCGTAGTGGAAAGAAAAATCTTGTCTTGTCTGCATGGGGTGATGATTCCCTGCTTTCGGAGGAGT
ATGTAAATCCACATTACAATTCAAGTAGTTATCAATTATATAGTGAGCAAACACAACAAAATTCT
Found at i:74926 original size:11 final size:11
Alignment explanation
Indices: 74910--74948 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
74900 TATGCCTGTA
74910 TATATATTTAT
1 TATATATTTAT
74921 TATATATTTA-
1 TATATATTTAT
* *
74931 TATAAATATAT
1 TATATATTTAT
74942 TATATAT
1 TATATAT
74949 ATAGATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATATTTAT
Found at i:74933 original size:21 final size:21
Alignment explanation
Indices: 74908--74948 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74898 TATATGCCTG
* *
74908 TATATATATTTATTATATATT
1 TATATAAATATATTATATATT
74929 TATATAAATATATTATATAT
1 TATATAAATATATTATATAT
74949 ATAGATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TATATAAATATATTATATATT
Found at i:75575 original size:4 final size:4
Alignment explanation
Indices: 75568--75594 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
75558 ATATATATAT
75568 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
75595 TGATGAATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:75580 original size:214 final size:211
Alignment explanation
Indices: 75199--75640 Score: 552
Period size: 214 Copynumber: 2.0 Consensus size: 211
75189 GATACGGTAG
* *
75199 TGATTTTGCTGTCAGACATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
1 TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
75264 ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTTTTCTAAG
66 ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAG-----T-AG
*
75329 CTCACAGTTTAGGGGTTATATAGAGACACACACATAC-AC-AC-ACATAAGATGAATACTTTATG
125 CTCACAATTTAGGGGTTATATAGAGACACACACATACAACAACAACATAAGATGAATACTTTATG
75391 TACAATCCTGCTGTGTCATTAC
190 TACAATCCTGCTGTGTCATTAC
* *
75413 TGATTTTGCCGTCAGAAATGCAGCGGCAATGATGAATTCTGTTTATATGCTTAAAACTTTTTTTC
1 TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTT-AAAC--TTTTTC
* ** *
75478 TTTATGTTATTTCTTAATGCAATC-TATTTGGTGTCAGATTTGATTGTGGTTTGATCAAG-AGCT
63 TTCATACTA-TTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTAGCT
* * * * * *
75541 CACAATTTAGGGGTTATATATATATATATACATACATACATACATACATACATATGATGAATGCT
127 CACAATTTAGGGG---T-TATATAGAGACACACACATACA-ACA-ACA-ACATAAGATGAATACT
*
75606 TTATGTACAATTCTGCTGTGTCATTAC
185 TTATGTACAATCCTGCTGTGTCATTAC
75633 TGATTTTG
1 TGATTTTG
75641 TAAGCTGCAT
Statistics
Matches: 198, Mismatches: 16, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
210 16 0.08
213 1 0.01
214 65 0.33
215 4 0.02
216 2 0.01
217 47 0.24
218 15 0.08
220 48 0.24
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (211 bp):
TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTAGCTCACA
ATTTAGGGGTTATATAGAGACACACACATACAACAACAACATAAGATGAATACTTTATGTACAAT
CCTGCTGTGTCATTAC
Found at i:75640 original size:220 final size:208
Alignment explanation
Indices: 75199--75640 Score: 546
Period size: 220 Copynumber: 2.0 Consensus size: 208
75189 GATACGGTAG
* *
75199 TGATTTTGCTGTCAGACATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
1 TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
75264 ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTTTTCTAAG
66 ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAG-----T-AG
*
75329 CTCACAGTTTAGGGGTTATATAGAGACACACACATACACACACATAAGATGAATACTTTATGTAC
125 CTCACAATTTAGGGGTTATATAGAGACACACACATACACACACATAAGATGAATACTTTATGTAC
75394 AATCCTGCTGTGTCATTAC
190 AATCCTGCTGTGTCATTAC
* *
75413 TGATTTTGCCGTCAGAAATGCAGCGGCAATGATGAATTCTGTTTATATGCTTAAAACTTTTTTTC
1 TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTT-AAAC--TTTTTC
* ** *
75478 TTTATGTTATTTCTTAATGCAATC-TATTTGGTGTCAGATTTGATTGTGGTTTGATCAAG-AGCT
63 TTCATACTA-TTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTAGCT
* * * * * *
75541 CACAATTTAGGGGTTATATATATATATATACATACATACATACATACATACATATGATGAATGCT
127 CACAATTTAGGGG-----T-TATATAGAGAC--ACACACATAC--ACACACATAAGATGAATACT
*
75606 TTATGTACAATTCTGCTGTGTCATTAC
182 TTATGTACAATCCTGCTGTGTCATTAC
75633 TGATTTTG
1 TGATTTTG
75641 TAAGCTGCAT
Statistics
Matches: 198, Mismatches: 16, Indels: 22
0.84 0.07 0.09
Matches are distributed among these distances:
210 16 0.08
214 48 0.24
215 5 0.03
216 9 0.05
217 47 0.24
218 22 0.11
220 51 0.26
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (208 bp):
TGATTTTGCCGTCAGAAATGCAGCAGCAATGATGAATTCTGTCTATATGCTTAAACTTTTTCTTC
ATACTATTCTTAATGCAAACGTATTTGGTGTCAGATTTGATTGTGGTTTGATCAAGTAGCTCACA
ATTTAGGGGTTATATAGAGACACACACATACACACACATAAGATGAATACTTTATGTACAATCCT
GCTGTGTCATTAC
Done.