Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1501
Parameters: 2 7 7 80 10 50 1000
Length:  104797

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
197--242
24
2.0
24
83
12
60
32
2
4
60
1.28
11562--11614
27
2.0
27
85
7
72
56
0
7
35
1.28
12061--12100
3
13.3
3
100
0
80
67
0
0
32
0.91
12433--12473
20
2.1
19
86
4
55
65
2
31
0
1.05
12933--13013
36
2.2
36
93
4
137
40
7
3
48
1.49
13337--13386
12
4.0
13
75
15
52
44
2
0
54
1.11
13401--13436
18
1.9
19
88
5
56
30
0
2
66
1.06
13588--13641
24
2.2
25
83
6
76
70
0
0
29
0.88
13586--13646
18
3.4
18
86
8
81
68
0
0
31
0.89
13590--13652
19
2.9
22
75
15
69
68
1
0
30
0.99
13586--13718
5
26.8
5
67
20
66
59
1
1
37
1.16
14078--14123
2
23.0
2
100
0
92
50
0
0
50
1.00
14708--14753
24
1.9
24
86
0
65
34
0
2
63
1.07
18607--18644
17
2.2
18
95
4
69
52
0
0
47
1.00
20906--20941
3
12.0
3
93
0
63
63
0
2
33
1.08
28280--28316
19
1.9
19
88
0
56
62
0
0
37
0.96
28880--28930
25
2.0
26
84
3
68
41
0
0
58
0.98
31363--31474
57
2.0
57
94
0
197
39
11
24
25
1.88
31690--31732
16
2.6
16
85
10
52
25
4
2
67
1.22
33258--33285
3
9.3
3
100
0
56
67
0
0
32
0.91
43429--43573
48
3.0
48
90
4
229
40
23
13
22
1.89
49824--49866
16
2.6
16
88
3
59
72
2
2
23
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56947--56976
2
15.0
2
100
0
60
50
0
0
50
1.00
57095--57121
2
13.5
2
100
0
54
48
0
0
51
1.00
58586--58628
7
5.9
7
84
10
59
67
0
0
32
0.91
58579--58637
17
3.5
17
80
15
61
64
0
0
35
0.94
58891--58923
2
16.5
2
93
0
57
51
3
0
45
1.16
59157--59204
21
2.2
22
81
7
62
39
0
0
60
0.97
59985--60034
26
2.0
26
84
4
66
54
2
2
42
1.23
60519--60551
2
16.5
2
100
0
66
51
0
0
48
1.00
61002--61047
23
2.0
24
86
4
67
41
6
0
52
1.27
71257--71327
37
1.9
37
94
0
124
25
14
25
35
1.93
71257--71338
37
2.2
37
89
4
121
25
18
23
32
1.97
72722--72762
3
13.7
3
100
0
82
68
0
0
31
0.90
72882--72928
24
2.0
24
83
4
60
59
0
12
27
1.34
74024--74086
31
2.0
33
90
6
103
49
1
1
47
1.20
74108--74154
20
2.3
20
75
7
51
36
4
6
53
1.46
76511--76746
9
26.2
9
68
22
65
65
4
0
29
1.16
76503--76593
19
5.1
19
72
17
79
67
4
0
28
1.10
76503--76593
17
5.1
18
76
12
82
67
4
0
28
1.10
76503--76593
28
3.4
27
80
6
87
67
4
0
28
1.10
76529--76593
8
7.5
8
80
13
58
67
1
0
30
1.00
76574--76710
8
17.5
8
72
18
85
63
5
0
31
1.16
76606--76662
30
1.9
30
82
7
71
71
7
0
21
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76641--76738
42
2.3
43
79
8
112
64
4
1
30
1.19
76678--76709
7
4.4
7
96
4
55
62
0
0
37
0.95
76819--76912
20
4.6
20
70
15
59
30
1
5
62
1.24
76870--76940
37
1.9
37
85
5
99
28
0
4
67
1.09
80917--81025
39
2.8
39
85
0
137
42
9
11
37
1.72
84057--84088
12
2.6
13
85
14
50
21
0
0
78
0.76
85485--85518
7
5.0
7
89
7
52
67
0
0
32
0.91
85486--85532
25
1.9
24
82
4
58
63
0
0
36
0.94
85649--85692
19
2.3
20
88
7
65
54
0
0
45
0.99
85649--85684
18
1.9
19
94
5
65
55
0
0
44
0.99
85650--85702
19
2.8
18
85
8
61
54
0
0
45
0.99

Tables:   1

The End!