Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1502
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140229
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:86 original size:32 final size:32
Alignment explanation
Indices: 7--2613 Score: 1600
Period size: 32 Copynumber: 85.5 Consensus size: 32
1 TTTCAA
**
7 AAAGCCCACACAAGTCCGCAGTCGGCAAC-CA-TGA
1 AAAGCCCACACAAGT-CG--GT-GGCAACTCATTTC
*
41 AAAGCCCACACAAGTCGGTGGCAACTCGTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
73 AAAGCCCATACAAGTCGGTGGTAAC-CTATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC-ATTTC
**
105 AAAG-CC-CACAAGTTAGTGGC-A-TCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
133 AAAGCCCACACAAGTCAGTGGCAACTCATTTA
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * *
165 AAAGCCCGCACAAGTTGGTGGCAACCCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
197 AAAGCCCACATAAGTCGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * * * *
229 AAA--ACTCATAAGTCAGTGGCATC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
258 AAAG-CC-CACAAGTCAGTGGCATC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
287 AAAG--CTCACAAGTCAGTGGC-A-TCCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
315 AAAGCCCACACAAGTCGGTGGCAACTCTTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC-ATTTC
** *
348 AAAG-CC-CACAAGTCACTGGC-A-TCTTTTGC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTT-C
** *
377 AAAG-CCA-ACAAGTCAATGGC-A-TCCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
405 AAAGCCCACACAAGTTGGTGGCAACTCTTTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC--ATTTC
* * *
439 AAAG-CC-CATAAGTCAGTGGC-A-TTATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
467 AAAG-CC-CATAAGTCGGTGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
497 AAAGCCCATACAAGTCGGTGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** * *
529 AAAGCCCACACAAGTTAGT-GCTAACCCGTTTC
1 AAAGCCCACACAAGTCGGTGGC-AACTCATTTC
*
561 AAAGCCCACACAAGTCGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
593 AAAG--CGCACAAGTCAGTGGC-A-TCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
621 AAAGCCCACACAAGTCGGTGACAACTCATTTG
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** *
653 AAAGCCCACACAAGTTTGTGGCAACCCATTT-
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
684 AAAGCTCATACAAGTCGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* ** *** *
716 AAAG-CC-CATAAGTTAGTGGTGTC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
745 AAAG-CC-CACAAGTCAGTGGC-A-TCCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* **
773 AAAGCCCACACAAGTCGGTGGC-TCTTTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
804 AAAG-CC-CACAAGTCAGTGGC-A-TTATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
832 AAAG-CC-CACAAGTTGGTAGCAACTTATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** *
862 AAAGCCCACA-AAGTTAGTGGCAAC-CTGTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC-ATTTC
* *
893 AAAGCCCACACAAGTCGGTGGCAACCCGTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
925 AAAGCCCACACAAGTCGGTGGCAACCCATTCC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
957 AAAG-CC-CATAAGTCAGTGGC-A-TCTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
985 AAAACCCACACAAGTCGGTGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * * *
1017 AAAACCCACACAAGTTGGCGGCAACCCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** * * *
1049 AAAGCTTATACAAGTCGGTGGCAACCCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** *** *
1081 AAAG-CC-CACAAGTTAGTGGTGTC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1110 AAA-ACC-CATAAGTCAGTGGC-A-TCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
1138 AAAG-CC-CACAAGTCAGTGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
1168 AAAGCCCACACAAGTCGGTGAG-AACTCATTTG
1 AAAGCCCACACAAGTCGGTG-GCAACTCATTTC
* * * *
1200 AAAGCCCACATAAGTTGGTGGAAAC-CTATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTC-ATTTC
* * *
1232 AAAGCTCATACAAGTCGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * ** * *
1264 AAA-ACC-CATAAGTTAGTGGCATC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1293 AAAG-CC-CACAAGTCAGTGGC-A-TCCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1321 AAAGCCCACACAAGGCGGTGGCAACTCTTTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC--ATTTC
** *
1355 AAAG-CC-CACAAGTCACT-GC-A-TCCTTTGC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTT-C
** *
1383 AAAGCCCACA-AA-TCAATGGC-A-TCCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
1411 AAAGCCCACACAAGTCGCGGTGGCAACT-ATTTTTTC
1 AAAGCCCACACAAGT--CGGTGGCAACTCA---TTTC
** *
1447 AAAG-CCA-ACAAGTTAGTGGC-A-TTATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1475 AAAG-AC-CACAA-TTGGTAGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
**
1504 -AAGCCCACACAAGTCGGTGGC-AC-CCGTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1533 AAAGCCCACACGAGTCGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* **
1565 AAAG-CC-CATAAGTCAATGGC-A-TCATCTT-
1 AAAGCCCACACAAGTCGGTGGCAACTCAT-TTC
* *
1593 AAAACCCACACAAGTCGGTGGCAACTCATTTG
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1625 AAAGCCCACACAAGTTGGTGGCAACTCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** * *
1657 AAAGCTTATACAAGTCGGGTGGCAACCCATTTC
1 AAAGCCCACACAAGTC-GGTGGCAACTCATTTC
* ** * * *
1690 AAA-ACC-CACAAGTTAGTAGC--GTCTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1718 AAA-ACC-CACAAGTCAGTGGC-A-TCA-TTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
1745 AAAGCCCACA-AA-TCAGTGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1775 AAAGCCCACACAAGTCAGTGGCAACTCATTTG
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1807 AAAGCCCACACTAGTCGGTGGCAACCCGTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1839 AAAGCCCACACAAGTTGGTGGTAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
1871 AAAG-CC-CACAAGTCAGTGGC-A-TCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1899 AAAGCCCACATAAGTTGGTGGCAACTCATTTG
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
1931 AAAGCCCACACAAGTTGGTGGCAACCCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
1963 AAAGCCCACACAAGTCGGTGGAAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* ** * * *
1995 AAA---CTCACAAGTTAGTGGCATC-CTTTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * *
2023 AAAG-CC-CACAAGTCAGTGGCATC-CTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
2052 AAAG-CC-CACAAGTCAGTGGC-A-TC-CTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
2079 AAAGCCCACACAAGTCGAT-GC-ACTCTTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTC-ATTTC
** *
2110 AAAG-CC-CACAAGTCACTGGC-A-TCCTTTGC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTT-C
**
2139 AAAG-CC-CACAAGTCAATGAGCAAC-C-TTTC
1 AAAGCCCACACAAGTCGGTG-GCAACTCATTTC
* *
2168 AAAGCCCACACAAGTTGGT-GCAAACTCTTTTTTTTC
1 AAAGCCCACACAAGTCGGTGGC-AACTC----ATTTC
*
2204 AAAG-CC-CACAAGT-GAGTGGC--CTTATTTC
1 AAAGCCCACACAAGTCG-GTGGCAACTCATTTC
*
2232 AAAG-CC-CACAAGTCGATGGCAACTCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * *
2262 AAAGCCCATATAAGTCGGTGGCCAACCCGTTTC
1 AAAGCCCACACAAGTCGGTGG-CAACTCATTTC
* * * *
2295 AAAGCTCACACAA-TTGGTGGGAACCCA-TTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * * *
2325 AAAG--CTCAGAAGTCAGTGGC-A-TTATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** * *
2353 AAAGTGCACACAAGTCGGTGGCAACTTATTTG
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * *
2385 AAAGCCCACACAAGTTGGTAGCAACCCATTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* * * *
2417 AAAGCTCATACAAGTCGTTGGCAACCCATTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
** *
2449 AAAG-CC-CACAAGTTAGTGGC-A-TCCTGTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCAT-TTC
** * * *
2478 AAAG-CC-CACAAGTTAGTGGCATC-CTTTTT
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
2507 AAAG-CCACACAAGTCGGTGGCAACTCTTTTTTT
1 AAAGCCCACACAAGTCGGTGGCAACTC--ATTTC
* * *
2540 AAAG-CC-TACAAGTCAGTGGC-AC-CCTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
* *
2568 AAAGCCCACA-AAGTCAGTGGCAACTCTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACTCATTTC
*
2599 AAAGCCCACATAAGT
1 AAAGCCCACACAAGT
2614 TAGTGACACC
Statistics
Matches: 2090, Mismatches: 324, Indels: 320
0.76 0.12 0.12
Matches are distributed among these distances:
27 31 0.01
28 273 0.13
29 364 0.17
30 384 0.18
31 174 0.08
32 726 0.35
33 68 0.03
34 47 0.02
35 7 0.00
36 16 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACTCATTTC
Found at i:229 original size:124 final size:124
Alignment explanation
Indices: 7--2667 Score: 1720
Period size: 124 Copynumber: 21.8 Consensus size: 124
1 TTTCAA
** * * *
7 AAAGCCCACACAAGTCCGCAGTCGGCAAC-CA-TGAAAAGCCCACACAAGTCGGTGGCAACTCGT
1 AAAGCCCACACAAGT---CAGT-GGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCAT
* * *
70 TTCAAAGCCCATACAAGTCGGTGGTAACCTATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
62 TTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * ** *
133 AAAGCCCACACAAGTCAGTGGCAACTCATTTAAAAGCCCGCACAAGTTGGTGGCAACCCATTTTA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * * * *
198 AAGCCCACATAAGTCGGTGGCAACCCATTTCAAAACTCATAAGTCAGTGGCATCCTTTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCAT-CATTTC
* * * *
258 AAAG-CC-CACAAGTCAGTGGCATC-CTTTTCAAAG--CTCACAAGTCAGTGGC-ATCC-TTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
** * * *
316 AAGCCCACACAAGTCGGTGGCAACTCTTTTTCAAAGCCCACAAGTCACTGGCATCTTTTGC
66 AAGCCCACACAAGTCGGTGGCAAC-CCATTTCAAAGCCCACAAGTTAGTGGCATCATTT-C
* * ** **
377 AAAG-CCA-ACAAGTCAATGGC-A-TCCTTTCAAAGCCCACACAAGTTGGTGGCAACTCTTTTTT
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAAC-C-CATTT
* * ** * **
438 CAAAG-CC-CATAAGTCAGTGGC-A-TTATTTCAAAGCCCATAAGTCGGTGGCAACTCATTTC
64 CAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGC-A-TCATTTC
* * * *
497 AAAGCCCATACAAGTCGGTGGCAACTCATTTCAAAGCCCACACAAGTTAGT-GCTAACCCGTTTC
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGC-AACCCATTTC
* *
561 AAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCGCACAAGTCAGTGGCATCATTTC
65 AAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * * **
621 AAAGCCCACACAAGTCGGTGACAACTCATTTGAAAGCCCACACAAGTTTGTGGCAACCCATTT-A
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * ** *
685 AAGCTCATACAAGTCGGTGGCAACCCATTTCAAAGCCCATAAGTTAGTGGTGTCCTTTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCAT-CATTTC
* * * ***
745 AAAG-CC-CACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACACAAGTCGGTGGC-TCTTTTTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* ** * * *
805 AAG-CC-CACAAGTCAGTGGC-A-TTATTTCAAAGCCCACAAGTTGGTAGCAACTTATTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGC-A-TCATTTC
* * * *
862 AAAGCCCACA-AAGTTAGTGGCAAC-CTGTTTCAAAGCCCACACAAGTCGGTGGCAACCCGTTTC
1 AAAGCCCACACAAGTCAGTGGCAACTC-ATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTC
* * * *
925 AAAGCCCACACAAGTCGGTGGCAACCCATTCCAAAGCCCATAAGTCAGTGGCATCTTTTC
65 AAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * * ** * *
985 AAAACCCACACAAGTCGGTGGCAACTCATTTCAAAACCCACACAAGTTGGCGGCAACCCATTTTA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
** * * ** *
1050 AAGCTTATACAAGTCGGTGGCAACCCATTTTAAAGCCCACAAGTTAGTGGTGTCCTTTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCAT-CATTTC
* * *
1110 AAA-ACC-CATAAGTCAGTGGC-A-TCATTTCAAAG-CC-CACAAGTCAGTGGCAACTCATTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * * * *
1169 AAGCCCACACAAGTCGGTGAG-AACTCATTTGAAAGCCCACATAAGTTGGTGGAAACCTATTTT
66 AAGCCCACACAAGTCGGTG-GCAACCCATTTCAAAGCCCAC--AAGTTAGTGG-CATC-ATTTC
* * * * * * * * *
1232 AAAGCTCATACAAGTCGGTGGCAACCCATTTCAAA-ACC-CATAAGTTAGTGGC-ATCCTTTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * *** *
1294 AAG-CC-CACAAGTCAGTGGC-ATCC-TTTCAAAGCCCACACAAGGCGGTGGCAACTCTTTTTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAG-CC-CACAAGTTAGTGGC-A-TC--ATTTC
* * * *
1355 AAAG-CC-CACAAGTCACT-GC-A-TCCTTTGCAAAGCCCACA-AA-TCAATGGC-ATCC-TTTC
1 AAAGCCCACACAAGTCAGTGGCAACTCATTT-CAAAGCCCACACAAGTCAGTGGCAACCCATTTC
* * *
1411 AAAGCCCACACAAGTCGCGGTGGCAA-CTATTTTTTCAAAGCCAACAAGTTAGTGGCATTATTTC
65 AAAGCCCACACAAGT--CGGTGGCAACCCA---TTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* ** * * *
1475 AAAG-AC-CACAA-TTGGTAGCAACTCATTTC-AAGCCCACACAAGTCGGTGGC-ACCC-GTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * *
1534 AAGCCCACACGAGTCGGTGGCAACCCATTTCAAAGCCCATAAGTCAATGGCATCATCTT-
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCAT-TTC
* * * ** * *
1593 AAAACCCACACAAGTCGGTGGCAACTCATTTGAAAGCCCACACAAGTTGGTGGCAACTCATTTTA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
** * * * * *
1658 AAGCTTATACAAGTCGGGTGGCAACCCATTTCAAAACCCACAAGTTAGTAGCGTCTTTTC
66 AAGCCCACACAAGTC-GGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* *
1718 AAA-ACC-CACAAGTCAGTGGC-A-TCA-TTCAAAGCCCACA-AA-TCAGTGGCAACTCATTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * ** * *
1776 AAGCCCACACAAGTCAGTGGCAACTCATTTGAAAGCCCACACTAGTCGGTGGCAACCCGTTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACA--AGTTAGTGGC-A-TCATTTC
** * * *
1839 AAAGCCCACACAAGTTGGTGGTAACCCATTTCAAAG-CC-CACAAGTCAGTGGC-A-TCATTTCA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * * * * *
1900 AAGCCCACATAAGTTGGTGGCAACTCATTTGAAAGCCCACACAAGTTGGTGGCAACCCATTTT
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAG-CC-CACAAGTTAGTGGC-A-TCATTTC
* * * * * * * *
1963 AAAGCCCACACAAGTCGGTGGAAACCCATTTCAAA---CTCACAAGTTAGTGGC-ATCCTTTTTA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * * *
2024 AAG-CC-CACAAGTCAGTGGC-ATCCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * *
2079 AAAGCCCACACAAGTC-GAT-GC-ACTCTTTTTCAAAG-CC-CACAAGTCACTGGC-ATCC-TTT
1 AAAGCCCACACAAGTCAG-TGGCAACTC-ATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTT
** *
2137 GCAAAG-CC-CACAAGTCAATGAGCAA-CC-TTTCAAAGCCCACACAAGTTGGT-GCAAACTCTT
64 -CAAAGCCCACACAAGTCGGTG-GCAACCCATTTCAAAG-CC-CACAAGTTAGTGGC--A-TC--
*
2197 TTTTTTC
120 --ATTTC
* * *
2204 AAAG-CC-CACAAGTGAGTGGC--CTTATTTCAAAG-CC-CACAAGTC-GATGGCAACTCATTTC
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAG-TGGCAACCCATTTC
* * * * * *
2262 AAAGCCCATATAAGTCGGTGGCCAACCCGTTTCAAAGCTCACACAA-TTGGTGGGAACCCA-TTC
65 AAAGCCCACACAAGTCGGTGG-CAACCCATTTCAAAGC-C-CACAAGTTAGT-GGCA-TCATTTC
* * * * ** * ** *
2325 AAAG--CTCAGAAGTCAGTGGC-A-TTATTTTAAAGTGCACACAAGTCGGTGGCAACTTATTTGA
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
* * * * * *
2386 AAGCCCACACAAGTTGGTAGCAACCCATTTTAAAGCTCATACAAG-TCGTTGGCAACCCATTTC
66 AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGC-C-CACAAGTTAG-TGGC-A-TCATTTC
* * * * * *
2449 AAAG-CC-CACAAGTTAGTGGC-A-TCCTGTTCAAAG-CC-CACAAGTTAGTGGC-ATCCTTTTT
1 AAAGCCCACACAAGTCAGTGGCAACTCAT-TTCAAAGCCCACACAAGTCAGTGGCAACCCATTTC
** * * * * *
2507 AAAG-CCACACAAGTCGGTGGCAACTCTTTTTTTAAAGCCTACAAGTCAGTGGCACCCTTTC
65 AAAGCCCACACAAGTCGGTGGCAAC-C-CATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
* * * * **
2568 AAAGCCCACA-AAGTCAGTGGCAACTCTTTTCAAAGCCCACATAAGTTAGTGAC-ACCTTTTTTT
1 AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACC---CATT
* * * *
2631 TAAAAGCCCACGCAAGTCGATGGCAACCCTTTTCAAA
63 TCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAA
2668 TCACCATTTT
Statistics
Matches: 2042, Mismatches: 339, Indels: 309
0.76 0.13 0.11
Matches are distributed among these distances:
114 3 0.00
115 12 0.01
116 81 0.04
117 41 0.02
118 144 0.07
119 183 0.09
120 172 0.08
121 174 0.09
122 212 0.10
123 281 0.14
124 464 0.23
125 134 0.07
126 107 0.05
127 33 0.02
128 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (124 bp):
AAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACCCATTTCA
AAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCCCACAAGTTAGTGGCATCATTTC
Found at i:1144 original size:306 final size:304
Alignment explanation
Indices: 49--2608 Score: 1820
Period size: 306 Copynumber: 8.4 Consensus size: 304
39 GAAAAGCCCA
* * * * *
49 CACAAGTCGGTGGCAACTCGTTTCAAAGCCCATACAAGTCGGTGGTAAC-CTATTTCAAAG-CC-
1 CACAAGTCAGTGGC-A-TCTTTTCAAAACCCACACAAGTCGGTGGCAACTC-ATTTCAAAGCCCA
* * * *
111 CACAAGTTAGTGGC-A-TCA-TTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTAAAAGCCCG
63 CACAAGTTGGTGGCAACCCATTTTCAAAG--CACACAAGTCAGTGGC-ACCCATTTCAAAG-CC-
** * * * * *
173 CACAAGTTGGTGGCAACCCATTTT-AAAGCCCACATAAGTCGGTGGCAACCCATTTCAAAACTCA
123 CACAAGTCAGTGGC-ATCC-TTTTCAAAGCCCAC--AAGTCAGTGGC-A-TCATTTCAAAGCCCA
* * * * * * *
237 TAAGTCAGTGGCATC-CTTTTCAAAG-CC-CACAAGTCAGTGGCATC-CTTTTCAAAG--CTCAC
182 CAAGTTAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACAC
* * **
296 AAGTCAGTGGCATCC-TTTCAAAGCCCACACAAGTCGGTGGCAACTCTTTTTCAAAGCC
247 AAGTCGGTGGCACCCGTTTCAAAGCCCACACAAGTCGGTGGCAAC-CCATTTCAAAGCC
* * ** *
354 CACAAGTCACTGGCATCTTTTGC-AAAGCCA-ACAAGTCAATGGC-A-TCCTTTCAAAGCCCACA
1 CACAAGTCAGTGGCATCTTTT-CAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACA
** * * ** *
415 CAAGTTGGTGGCAACTCTTTTTTCAAAGCCCATAAGTCAGTGGCA-TTATTTCAAAGCCCATAAG
65 CAAGTTGGTGGCAAC-CCATTTTCAAAGCACACAAGTCAGTGGCACCCATTTCAAAGCCCACAAG
* * * *
479 TCGGTGGCAACTCATTTCAAAGCCCATACAAGTCGGTGGCAACTCATTTCAAAGCCCACACAAGT
129 TCAGTGGCATC-CTTTTCAAAGCCC--ACAAGTCAGTGGC-A-TCATTTCAAAG-CC-CACAAGT
* * * * *
544 TAGT-GCTAACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAG--CGCACAAGT
187 TAGTGGC-AACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGT
* * * * * *
606 CAGTGGCA-TCATTTCAAAGCCCACACAAGTCGGTGACAACTCATTTGAAAGCCC
251 CGGTGGCACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAG-CC
** * * * * * *
660 ACACAAGTTTGTGGCAACCCATTT-AAAGCTCATACAAGTCGGTGGCAACCCATTTCAAAG-CC-
1 -CACAAGTCAGTGGC-A-TCTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCA
* * *** * *
722 CATAAGTTAGTGG-TGTCC-TTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAC
63 CACAAGTTGGTGGCAACCCATTTTCAAAGCACACAAGTCAGTGGCACCCATTTCAAAG-CC-CAC
* * * *
784 AAGTCGGTGGC-TCTTTTTTCAAAGCCCACAAGTCAGTGGCATTATTTCAAAGCCCACAAGTTGG
126 AAGTCAGTGGCATC-CTTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAG
* * * *
848 TAGCAACTTATTTCAAAGCCCACA-AAGTTAGTGGCAAC-CTGTTTCAAAGCCCACACAAGTCGG
190 TGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTC-ATTTCAAAGCCCACACAAGTCGG
*
911 TGGCAACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTCCAAAGCC
254 TGGC-ACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCC
* *
963 CATAAGTCAGTGGCATCTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAACCCACAC
1 CACAAGTCAGTGGCATCTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACAC
* * * *
1028 AAGTTGGCGGCAACCCATTTT-AAAGCTTATACAAGTCGGTGGCAACCCATTTTAAAGCCCACAA
66 AAGTTGGTGGCAACCCATTTTCAAAGC--ACACAAGTCAGTGGC-ACCCATTTCAAAGCCCACAA
* ** * * *
1092 GTTAGTGGTGTCCTTTTCAAAACCCATAAGTCAGTGGCATCATTTCAAAGCCCACAAGTCAGTGG
128 GTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGTGG
* * * *
1157 CAACTCATTTCAAAGCCCACACAAGTCGGTGAG-AACTCATTTGAAAGCCCACATAAGTTGGTGG
193 CAACTCATTTCAAAGCCCACACAAGTCAGTG-GCAACTCATTTCAAAGCCCACACAAGTCGGTGG
* ** * * * *
1221 AAACCTATTTTAAAGCTCATACAAGTCGGTGGCAACCCATTTCAAAACC
257 -CACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCC
* * * * *
1270 CATAAGTTAGTGGCATCCTTTTC-AAAGCC-CACAAGTCAGTGGC-A-TCCTTTCAAAGCCCACA
1 CACAAGTCAGTGGCAT-CTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACA
** ** * * *
1331 CAAGGCGGTGGCAACTCTTTTTTCAAAGCCCACAAGTCACT-GCATCC-TTTGCAAAGCCCACAA
65 CAAGTTGGTGGCAAC-CCATTTTCAAAGCACACAAGTCAGTGGCACCCATTT-CAAAGCCCACAA
* * * * *
1394 ATCAATGGCATCC-TTTCAAAGCCCACACAAGTCGCGGTGGCAACTATTTTTTCAAAGCCAACAA
128 GTCAGTGGCATCCTTTTCAAAG-CC-CACAAGT--CAGTGGCATC-A---TTTCAAAGCCCACAA
* * ** *
1458 GTTAGTGGC-A-TTATTTCAAAG-AC-CACAA-TTGGTAGCAACTCATTTC-AAGCCCACACAAG
185 GTTAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAG
*
1517 TCGGTGGCACCCG-TTCAAAGCCCACACGAGTCGGTGGCAACCCATTTCAAAGCC
250 TCGGTGGCACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCC
* * * *
1571 CATAAGTCAATGGCATCATCTT-AAAACCCACACAAGTCGGTGGCAACTCATTTGAAAGCCCACA
1 CACAAGTCAGTGGCATC-TTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACA
* * * *
1635 CAAGTTGGTGGCAACTCATTTT-AAAGCTTATACAAGTCGGGTGGCAACCCATTTCAAAACCCAC
65 CAAGTTGGTGGCAACCCATTTTCAAAGC--ACACAAGTC-AGTGGC-ACCCATTTCAAAGCCCAC
* * * * * *
1699 AAGTTAGTAGCGT-CTTTTCAAAACCCACAAGTCAGTGGCATCA-TTCAAAGCCCACAAATCAGT
126 AAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGT
* *
1762 GGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTGAAAGCCCACACTAGTCGGTG
191 GGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCGGTG
* *
1827 GCAACCCGTTTCAAAGCCCACACAAGTTGGTGGTAACCCATTTCAAAGCC
256 GC-ACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCC
* * * * *
1877 CACAAGTCAGTGGCATCATTTCAAAGCCCACATAAGTTGGTGGCAACTCATTTGAAAGCCCACAC
1 CACAAGTCAGTGGCATCTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACAC
* * *
1942 AAGTTGGTGGCAACCCATTTT-AAAGCCCACACAAGTCGGTGGAAACCCATTTCAAA-CTCACAA
66 AAGTTGGTGGCAACCCATTTTCAAAG--CACACAAGTCAGTGG-CACCCATTTCAAAGCCCACAA
* * * *
2005 GTTAGTGGCATCCTTTTTAAAGCCCACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTG
128 GTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCAT-CATTTCAAAGCCCACAAGTTAGTG
* * **
2070 GC-A-TC-CTTCAAAGCCCACACAAGTC-GAT-GC-ACTCTTTTTCAAAG-CC-CACAAGTCACT
192 GCAACTCATTTCAAAGCCCACACAAGTCAG-TGGCAACTC-ATTTCAAAGCCCACACAAGTCGGT
* **
2127 GGCATCC-TTTGCAAAG-CC-CACAAGTCAATGAGCAA-CC-TTTCAAAGCCC
255 GGCACCCGTTT-CAAAGCCCACACAAGTCGGTG-GCAACCCATTTCAAAG-CC
** * *
2175 ACACAAGTTGGT-GCAAACTCTTTTTTTTC-AAAGCC-CACAAGT-GAGTGGC--CTTATTTCAA
1 -CACAAGTCAGTGGC--A-TC----TTTTCAAAACCCACACAAGTCG-GTGGCAACTCATTTCAA
* * * * * * *
2234 AG-CC-CACAAGTCGATGGCAACTCA-TTTCAAAGCCCATATAAGTCGGTGGCCAACCCGTTTCA
57 AGCCCACACAAGTTGGTGGCAACCCATTTTCAAAG--CACACAAGTCAGTGG-C-ACCCATTTCA
** * * ** * * * *
2296 AAGCTCACACAA-TTGGTGGGAACCCATTCAAAGCTCAGAAGTCAGTGGCATTATTTTAAAGTGC
118 AAGC-C-CACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAA--GC
* ** * * ** * * * *
2360 ACACAAGTCGGTGGCAACTTATTTGAAAGCCCACACAAGTTGGTAGCAACCCATTTTAAAGCTCA
179 CCACAAGTTAGTGGCAACTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCA
* * * ** *
2425 TACAAGTCGTTGGCAACCCATTTCAAAG-CC-CACAAGTTAGTGGC-ATCC-TGTTCAAAGCC
244 CACAAGTCGGTGGC-ACCCGTTTCAAAGCCCACACAAGTCGGTGGCAACCCAT-TTCAAAGCC
* * * * *
2484 CACAAGTTAGTGGCATCCTTTT-TAAAGCCACACAAGTCGGTGGCAACTCTTTTTTTAAAG-CC-
1 CACAAGTCAGTGGCAT-CTTTTCAAAACCCACACAAGTCGGTGGCAACTC--ATTTCAAAGCCCA
* ** * * *
2546 TACAAGTCAGTGGC-ACCC--TTTCAAAGCCCACAAAGTCAGTGGCAACTCTTTTCAAAGCCCAC
63 CACAAGTTGGTGGCAACCCATTTTCAAAGCACAC-AAGTCAGTGGC-ACCCATTTCAAAGCCCAC
2608 A
126 A
2609 TAAGTTAGTG
Statistics
Matches: 1828, Mismatches: 293, Indels: 271
0.76 0.12 0.11
Matches are distributed among these distances:
297 8 0.00
298 38 0.02
299 60 0.03
300 108 0.06
301 167 0.09
302 169 0.09
303 150 0.08
304 234 0.13
305 145 0.08
306 366 0.20
307 200 0.11
308 73 0.04
309 68 0.04
310 30 0.02
311 12 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (304 bp):
CACAAGTCAGTGGCATCTTTTCAAAACCCACACAAGTCGGTGGCAACTCATTTCAAAGCCCACAC
AAGTTGGTGGCAACCCATTTTCAAAGCACACAAGTCAGTGGCACCCATTTCAAAGCCCACAAGTC
AGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCAA
CTCATTTCAAAGCCCACACAAGTCAGTGGCAACTCATTTCAAAGCCCACACAAGTCGGTGGCACC
CGTTTCAAAGCCCACACAAGTCGGTGGCAACCCATTTCAAAGCC
Found at i:2627 original size:91 final size:91
Alignment explanation
Indices: 41--2667 Score: 568
Period size: 92 Copynumber: 28.7 Consensus size: 91
31 GCAACCATGA
* * * * * * * *
41 AAAGCCCACACAAGTCGGTGGCAACTC--GTTTCAAAGCCCATACAAGTCGGTGGTAACCTATTT
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCC--ACAAGTCAGTGGCACCCT-GTT
* * *
104 CAAAGCCCACAAGTTAGTGGC-ATCATTTC
62 CAAAGCCCACAAGTCAGTGGCAACCTTTTC
* * * **
133 AAAGCCCACACAAGTCAGTGGCAACTC--ATTTAAAAGCCCGCACAAGTTGGTGGCAACCCAT-T
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC-ACCC-TGT
* * *
195 TTAAAGCCCACATAAGTCGGTGGCAACCCATTTC
61 TCAAAGCCCAC--AAGTCAGTGGCAA-CCTTTTC
* * * * * * * *
229 AAA-ACTCATAAGTCAGTGGC-A-TC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAAA
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAAA
* *
290 GCTCACAAGTCAGTGGCATCC-TTTC
66 GCCCACAAGTCAGTGGCAACCTTTTC
* * * * * *
315 AAAGCCCACACAAGTCGGTGGCAACTC-TTTTTCAAAGCCCACAAGTCACTGGCA-TCTTTTGCA
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTT-CA
* * *
378 AAGCCAACAAGTCAATGGCATCC-TTTC
64 AAGCCCACAAGTCAGTGGCAACCTTTTC
** * * * ***
405 AAAGCCCACACAAGTTGGTGGCAACTCTTTTTTCAAAGCCCATAAGTCAGTGGCATTAT-TTCAA
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
* * *
469 AGCCCATAAGTCGGTGGCAACTCATTTC
65 AGCCCACAAGTCAGTGGCAAC-CTTTTC
* * * * * *
497 AAAGCCCATACAAGTCGGTGGCAACTC--ATTTCAAAGCCCACACAAGTTAGT-GCTAACCC-GT
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC--ACCCTG-
* *
558 TTCAAAGCCCACACAAGTCGGTGGCAACCCATTTC
60 TTCAAAG-CC-CACAAGTCAGTGGCAA-CCTTTTC
* * * * * * *
593 AAAG-CGCACAAGTCAGTGGC-A-TC--ATTTCAAAGCCCACACAAGTCGGTGACAACTCAT-TT
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC-AC-CCTGTT
* ** *
652 GAAAGCCCACACAAGTTTGTGGCAACCCATTT-
62 CAAAG-CC-CACAAGTCAGTGGCAA-CCTTTTC
* * * ** * * * *** *
684 AAAGCTCATACAAGTCGGTGGCAAC-C-CATTTCAAAGCCCATAAGTTAGTGGTGTCCTTTTCAA
1 AAAGC-CACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
*
747 AGCCCACAAGTCAGTGGCATCC-TTTC
65 AGCCCACAAGTCAGTGGCAACCTTTTC
* * * ***
773 AAAGCCCACACAAGTCGGTG---GCTCTTTTTTCAAAGCCCACAAGTCAGTGGCATTAT-TTCAA
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
** * *
834 AGCCCACAAGTTGGTAGCAACTTATTTC
65 AGCCCACAAGTCAGTGGCAACCT-TTTC
* * * * *
862 AAAGCC-CACAAAGTTAGTGGCAAC-C-TGTTTCAAAGCCCACACAAGTCGGTGGCAACCC-GTT
1 AAAGCCACAC-AAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC-ACCCTG-T
* * *
923 TCAAAGCCCACACAAGTCGGTGGCAACCCATTCC
61 TCAAAG-CC-CACAAGTCAGTGGCAA-CCTTTTC
* * ** * * *
957 AAAGCC-CATAAGTCAGTGGC-A-TC-TTTTCAAAACCCACACAAGTCGGTGGCAACTCAT-TTC
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAGCC-CACAAGTCAGTGGC-AC-CCTGTTC
* ** *
1017 AAAACCCACACAAGTTGGCGGCAACCCATTTT-
63 -AAAGCC-CACAAGTCAGTGGCAA-CC-TTTTC
* * * * ** * *** *
1049 AAAGCTTATACAAGTCGGTGGCAAC-C-CATTTTAAAGCCCACAAGTTAGTGGTGTCCTTTTCAA
1 AAAGC-CACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
* * * *
1112 AACCCATAAGTCAGTGGC-ATCATTTC
65 AGCCCACAAGTCAGTGGCAACCTTTTC
* * * * * *
1138 AAAGCC-CACAAGTCAGTGGCAACTC--ATTTCAAAGCCCACACAAGTCGGTGAGAACTCAT-TT
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTG-GCAC-CCTGTT
* ** * *
1199 GAAAGCCCACATAAGTTGGTGGAAACCTATTTT
62 CAAAGCCCAC--AAGTCAGTGGCAACCT-TTTC
* * * ** * * * * * *
1232 AAAGCTCATACAAGTCGGTGGCAAC-C-CATTTCAAAACCCATAAGTTAGTGGCATCCTTTTCAA
1 AAAGC-CACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
*
1295 AGCCCACAAGTCAGTGGCATCC-TTTC
65 AGCCCACAAGTCAGTGGCAACCTTTTC
* * * * * *
1321 AAAGCCCACACAAGGCGGTGGCAACTCTTTTTTCAAAGCCCACAAGTCACT-GCATCCT-TTGCA
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTT-CA
* * *
1384 AAGCCCACAAATCAATGGCATCC-TTTC
64 AAGCCCACAAGTCAGTGGCAACCTTTTC
* * * * * * ***
1411 AAAGCCCACACAAGTCGCGGTGGCAACTATTTTTTCAAAGCCAACAAGTTAGTGGCATTAT-TTC
1 AAAG-CCACACAAGT--CAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTC
* ** * *
1475 AAAGACCACAA-TTGGTAGCAACTCATTTC
63 AAAGCCCACAAGTCAGTGGCAAC-CTTTTC
* * ** * *
1504 -AAGCCCACACAAGTCGGTGGC-AC-C--CGTTCAAAGCCCACACGAGTCGGTGGCAACCCAT-T
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACA--AGTCAGTGGC-ACCC-TGT
* * * * * *
1563 TCAAAGCCCATAAGTCAATGGCATCATCTTA
61 TCAAAGCCCACAAGTCAGTGGCAACCTTTTC
* * * * * ** *
1594 AAACCCACACAAGTCGGTGGCAACTC--ATTTGAAAGCCCACACAAGTTGGTGGCAACTCAT-TT
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC-AC-CCTGTT
* ** * *
1656 TAAAGCTTATACAAGTCGGGTGGCAACCCATTTC
62 CAAAGC--CCACAAGTC-AGTGGCAA-CCTTTTC
* * * * * * *
1690 AAAACC-CACAAGTTAGT-AGC--GTC--TTTTCAAAACCCACAAGTCAGTGGCA-TC-ATTCAA
1 AAAGCCACACAAGTCAGTGA-CAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAA
* *
1747 AGCCCACAAATCAGTGGCAACTCATTTC
65 AGCCCACAAGTCAGTGGCAAC-CTTTTC
* * * *
1775 AAAGCCCACACAAGTCAGTGGCAACTC--ATTTGAAAGCCCACACTAGTCGGTGGCAACCC-GTT
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACA--AGTCAGTGGC-ACCCTG-T
** * *
1837 TCAAAGCCCACACAAGTTGGTGGTAACCCATTTC
61 TCAAAG-CC-CACAAGTCAGTGGCAA-CCTTTTC
* * * ** *
1871 AAAGCC-CACAAGTCAGTGGC-A-TC--ATTTCAAAGCCCACATAAGTTGGTGGCAACTCAT-TT
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCAC--AAGTCAGTGGC-AC-CCTGTT
* **
1930 GAAAGCCCACACAAGTTGGTGGCAACCCATTTT-
62 CAAAG-CC-CACAAGTCAGTGGCAA-CC-TTTTC
* ** * * * * * *
1963 AAAGCCCACACAAGTCGGTGGA-AAC-C-CATTTCAAA-CTCACAAGTTAGTGGCATCCTTTTTA
1 AAAG-CCACACAAGTCAGT-GACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCA
*
2024 AAGCCCACAAGTCAGTGGCATCCTTTTC
64 AAGCCCACAAGTCAGTGGCAACCTTTTC
* * * * *
2052 AAAGCC-CACAAGTCAGTGGC-A-TC---CTTCAAAGCCCACACAAGTC-GAT-GCACTCTTTTT
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAG-CC-CACAAGTCAG-TGGCAC-CCTGTT
* * *
2109 CAAAGCCCACAAGTCACTGGCATCCTTTGC
62 CAAAGCCCACAAGTCAGTGGCAACCTTTTC
* * **
2139 AAAGCC-CACAAGTCAATGAGCAAC-C---TTTCAAAGCCCACACAAGTTGGT-GCAAACTCTTT
1 AAAGCCACACAAGTCAGTGA-CAACTCTTTTTTTAAAG-CC-CACAAGTCAGTGGC--AC-C---
* * * *
2198 TTTTTCAAAGCCCACAAGTGAGTGGC--CTTATTTC
57 CTGTTCAAAGCCCACAAGTCAGTGGCAACCT-TTTC
* * * * *
2232 AAAGCC-CACAAGTC-GATGGCAACTC--ATTTCAAAGCCCATATAAGTCGGTGGCCAACCC-GT
1 AAAGCCACACAAGTCAG-TGACAACTCTTTTTTTAAAGCCC--ACAAGTCAGTGG-C-ACCCTG-
** * **
2292 TTCAAAGCTCACACAA-TTGGTGGGAACCCATTC
60 TTCAAAGC-C-CACAAGTCAGTGGCAACCTTTTC
* * * * * * * * * *
2325 AAAG-CTCAGAAGTCAGTGGC-A---TTATTTTAAAGTGCACACAAGTCGGTGGCAACTTATTTG
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAA--GCCCACAAGTCAGTGGCACCCT-GTTC
** *
2385 AAAGCCCACACAAGTTGGTAGCAACCCATTTT-
63 AAAG-CC-CACAAGTCAGTGGCAA-CC-TTTTC
* * ** * * *
2417 AAAGCTCATACAAGTC-GTTGGCAAC-C-CATTTCAAAGCCCACAAGTTAGTGGCATCCTGTTCA
1 AAAGC-CACACAAGTCAG-TGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCA
* * *
2479 AAGCCCACAAGTTAGTGGCATCCTTTTT
64 AAGCCCACAAGTCAGTGGCAACCTTTTC
* * *
2507 AAAGCCACACAAGTCGGTGGCAACTCTTTTTTTAAAGCCTACAAGTCAGTGGCACCCT-TTCAAA
1 AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAAA
2571 GCCCACAAAGTCAGTGGCAACTCTTTTC
66 GCCCAC-AAGTCAGTGGCAAC-CTTTTC
* * * *
2599 AAAGCCCACATAAGTTAGTGACACCT-TTTTTTTAAAAGCCCACGCAAGTC-GATGGCAACCCTT
1 AAAG-CCACACAAGTCAGTGACAACTCTTTTTTT-AAAGCCCA--CAAGTCAG-TGGC-ACCCTG
2662 TTCAAA
60 TTCAAA
2668 TCACCATTTT
Statistics
Matches: 1992, Mismatches: 351, Indels: 379
0.73 0.13 0.14
Matches are distributed among these distances:
84 7 0.00
85 16 0.01
86 36 0.02
87 129 0.06
88 87 0.04
89 153 0.08
90 286 0.14
91 236 0.12
92 422 0.21
93 198 0.10
94 214 0.11
95 91 0.05
96 109 0.05
97 8 0.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (91 bp):
AAAGCCACACAAGTCAGTGACAACTCTTTTTTTAAAGCCCACAAGTCAGTGGCACCCTGTTCAAA
GCCCACAAGTCAGTGGCAACCTTTTC
Found at i:3889 original size:17 final size:16
Alignment explanation
Indices: 3863--3909 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
3853 TTAGATAAGA
*
3863 AAGAAAGAAGATAAAG
1 AAGAAAGAAGAAAAAG
3879 AAGAAATGAAGAAAAAG
1 AAGAAA-GAAGAAAAAG
*
3896 AA-AAAAAAGAAAAA
1 AAGAAAGAAGAAAAA
3910 AAATATGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 8 0.29
16 9 0.32
17 11 0.39
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (16 bp):
AAGAAAGAAGAAAAAG
Found at i:3905 original size:23 final size:24
Alignment explanation
Indices: 3863--3907 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
3853 TTAGATAAGA
* *
3863 AAGAAAGAAGATAAAGAAGAAATG
1 AAGAAAGAAGAAAAAAAAGAAATG
3887 AAGAAA-AAGAAAAAAAAGAAA
1 AAGAAAGAAGAAAAAAAAGAAA
3908 AAAAATATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (24 bp):
AAGAAAGAAGAAAAAAAAGAAATG
Found at i:20024 original size:20 final size:20
Alignment explanation
Indices: 19980--20034 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
19970 AAAAAGACAG
*
19980 AATGTATTGATACATTCATA
1 AATGTATTGATACATTCAAA
* *
20000 CATGTATTGATACATTGAAA
1 AATGTATTGATACATTCAAA
* *
20020 AATGTGTCGATACAT
1 AATGTATTGATACAT
20035 CTGAGTACAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (20 bp):
AATGTATTGATACATTCAAA
Found at i:20076 original size:20 final size:21
Alignment explanation
Indices: 20051--20159 Score: 89
Period size: 20 Copynumber: 4.9 Consensus size: 21
20041 ACAAAGACAG
20051 AATGTATCGATACAT-TGAAA
1 AATGTATCGATACATCTGAAA
*
20071 AATGTATCGATACATCT-ATA
1 AATGTATCGATACATCTGAAA
*
20091 CATGTATCGATACATCTGGGTAAAAAGACA
1 AATGTATCGATACATCT--G-----A-A-A
20121 GAATGTATCGATACAT-TGAAA
1 -AATGTATCGATACATCTGAAA
20142 AATGTATCGATACATCTG
1 AATGTATCGATACATCTG
20160 GGTAAAAATG
Statistics
Matches: 72, Mismatches: 4, Indels: 25
0.71 0.04 0.25
Matches are distributed among these distances:
20 48 0.67
21 4 0.06
22 1 0.01
23 1 0.01
28 2 0.03
30 2 0.03
31 14 0.19
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATCTGAAA
Found at i:20076 original size:71 final size:71
Alignment explanation
Indices: 19949--20158 Score: 278
Period size: 71 Copynumber: 2.9 Consensus size: 71
19939 TTTTAACTAG
* ** * * * * *
19949 ATGTATCAATACATCTGGAAAAAAAAGACAGAATGTATTGATACATTCATACATGTATTGATACA
1 ATGTATCGATACATCT-GAGTAAAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACA
20014 T-TGAAAA
65 TCT-AAAA
* *
20021 ATGTGTCGATACATCTGAGTACAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACAT
1 ATGTATCGATACATCTGAGTAAAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACAT
* *
20086 CTATAC
66 CTAAAA
*
20092 ATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACAT
1 ATGTATCGATACATCTGAGTAAAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACAT
20157 CT
66 CT
20159 GGGTAAAAAT
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
71 107 0.88
72 15 0.12
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (71 bp):
ATGTATCGATACATCTGAGTAAAAAGACAGAATGTATCGATACATTGAAAAATGTATCGATACAT
CTAAAA
Found at i:20126 original size:51 final size:51
Alignment explanation
Indices: 20071--20167 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
20061 TACATTGAAA
* *
20071 AATGTATCGATACATCT-ATACATGTATCGATACATCTGGGTAAAAAGACAG
1 AATGTATCGATACAT-TGAAAAATGTATCGATACATCTGGGTAAAAAGACAG
20122 AATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
1 AATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
20168 TGTGACTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (51 bp):
AATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAG
Found at i:23760 original size:37 final size:37
Alignment explanation
Indices: 23710--23789 Score: 160
Period size: 37 Copynumber: 2.2 Consensus size: 37
23700 AAAAGAGCTA
23710 TAATATAAGAGTTTTTCGTATAATTAACCCTAAATAT
1 TAATATAAGAGTTTTTCGTATAATTAACCCTAAATAT
23747 TAATATAAGAGTTTTTCGTATAATTAACCCTAAATAT
1 TAATATAAGAGTTTTTCGTATAATTAACCCTAAATAT
23784 TAATAT
1 TAATAT
23790 TATTAGGACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (37 bp):
TAATATAAGAGTTTTTCGTATAATTAACCCTAAATAT
Found at i:24467 original size:29 final size:27
Alignment explanation
Indices: 24429--24483 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
24419 ATAATTTAAT
24429 TTATTACATAAACTTTTCA-AATTAAAATA
1 TTATTACAT-AA-TTTT-ATAATTAAAATA
*
24458 TTATTGCATAATTTTATAATTAAAAT
1 TTATTACATAATTTTATAATTAAAAT
24484 TCTAAATCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 1 0.04
27 13 0.54
28 2 0.08
29 8 0.33
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (27 bp):
TTATTACATAATTTTATAATTAAAATA
Found at i:27781 original size:21 final size:20
Alignment explanation
Indices: 27746--27790 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
27736 AAATTTGTTT
*
27746 AAATATTCGTAAAACTAAAA
1 AAATATTCGTAAAACGAAAA
* *
27766 AAATATTTCTTAAAACGACAA
1 AAATA-TTCGTAAAACGAAAA
27787 AAAT
1 AAAT
27791 GAAAGAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.58, C:0.11, G:0.04, T:0.27
Consensus pattern (20 bp):
AAATATTCGTAAAACGAAAA
Found at i:28061 original size:23 final size:23
Alignment explanation
Indices: 28031--28083 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
28021 TTTAATTATA
*
28031 AAAT-ATATATAAATATTAAAAT
1 AAATAATATATAAATAATAAAAT
* * *
28053 AAATAATATTTTAATAATATAAT
1 AAATAATATATAAATAATAAAAT
28076 AAATAATA
1 AAATAATA
28084 AAAAAGACTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATAATATATAAATAATAAAAT
Found at i:28062 original size:15 final size:16
Alignment explanation
Indices: 28029--28076 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
28019 AATTTAATTA
28029 TAAAATATATATAAATAT
1 TAAAATA-ATAT-AATAT
28047 TAAAATAA-ATAATAT
1 TAAAATAATATAATAT
**
28062 TTTAATAATATAATA
1 TAAAATAATATAATA
28077 AATAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 11 0.41
16 8 0.30
17 1 0.04
18 7 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAAATAATATAATAT
Found at i:28082 original size:12 final size:12
Alignment explanation
Indices: 28032--28083 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
28022 TTAATTATAA
28032 AATATATATAAAT
1 AATATA-ATAAAT
* *
28045 ATTAAAATAAAT
1 AATATAATAAAT
* *
28057 AATAT-TTTAAT
1 AATATAATAAAT
28068 AATATAATAAAT
1 AATATAATAAAT
28080 AATA
1 AATA
28084 AAAAAGACTT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
11 9 0.30
12 17 0.57
13 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATAATAAAT
Found at i:39174 original size:31 final size:31
Alignment explanation
Indices: 39136--39212 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
39126 TACATTGAAA
*
39136 AATGTATCAATACATCTAGGTAAAAAGATAG
1 AATGTATCGATACATCTAGGTAAAAAGATAG
*
39167 AATGTATCGATACATCTGGGTAAAAAGATAG
1 AATGTATCGATACATCTAGGTAAAAAGATAG
39198 AATGTATCGATACAT
1 AATGTATCGATACAT
39213 TGAAAAATGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.27
Consensus pattern (31 bp):
AATGTATCGATACATCTAGGTAAAAAGATAG
Found at i:39222 original size:51 final size:51
Alignment explanation
Indices: 39167--39283 Score: 198
Period size: 51 Copynumber: 2.3 Consensus size: 51
39157 AAAAAGATAG
* *
39167 AATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCGATACATTGAAA
1 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAA
*
39218 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCACA
1 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAA
*
39269 CATGTATCGATACAT
1 AATGTATCGATACAT
39284 TAAAAATGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (51 bp):
AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAA
Found at i:39243 original size:24 final size:20
Alignment explanation
Indices: 39198--39302 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
39188 AAAAAGATAG
39198 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
39218 AATGTATCGATACATCTGGGTAAAAAGACA
1 AATGTATCGATACAT-T--G-----A-A-A
* *
39248 GAATGTATCGATACATTCACA
1 -AATGTATCGATACATTGAAA
*
39269 CATGTATCGATACATT-AAA
1 AATGTATCGATACATTGAAA
39288 AATGTATCGATACAT
1 AATGTATCGATACAT
39303 CTAGGTAAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
19 16 0.23
20 30 0.43
21 2 0.03
23 2 0.03
28 1 0.01
29 1 0.01
30 2 0.03
31 15 0.22
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:39294 original size:19 final size:20
Alignment explanation
Indices: 39249--39302 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
39239 AAAAAGACAG
*
39249 AATGTATCGATACATTCACA
1 AATGTATCGATACATTCAAA
*
39269 CATGTATCGATACATT-AAA
1 AATGTATCGATACATTCAAA
39288 AATGTATCGATACAT
1 AATGTATCGATACAT
39303 CTAGGTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:40344 original size:28 final size:28
Alignment explanation
Indices: 40263--40925 Score: 625
Period size: 28 Copynumber: 23.4 Consensus size: 28
40253 CGCCAACTTG
* **
40263 TGTGGGCTTTAGAGAAGGTTGCCACCAACT
1 TGTGGGCTTT-GA-AAGGGTGCCACTGACT
* * * * * *
40293 TGTGGGCTTTAAAAAGATGTCACTAATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
40321 TGTGGGCATCGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
40349 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
40377 TGTGGGCTTTGAGAGAGGTTGCCACCGACT
1 TGTGGGCTTTGA-A-AGGGTGCCACTGACT
40407 TGTGTAGGC-TT-AAAGGGGTGCCACTGACT
1 TGTG--GGCTTTGAAA-GGGTGCCACTGACT
* * *
40436 TGTGGGCTTTCAGAAGGATGCCACTAACT
1 TGTGGGCTTTGA-AAGGGTGCCACTGACT
* * * *
40465 TGTGGGTTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
40493 TGTGGG-TTTCGAAAGGGT-CTACTAACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
*
40520 TGTGGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
40548 TGTGGGCTTTGAAAAGGTGCCACTGACA
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
40576 CGTGGGCTTTGAGAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
40604 TGTGGGCTTTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
40632 TGTGGGCTTTGAAAGGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGG-TGCCACTGACT
* *
40661 CGTGGGCTTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAGGGTGCCACTGACT
* * * * *
40690 CGTGAGCTTTTGAAAGGATACCACTAACT
1 TGTGGGC-TTTGAAAGGGTGCCACTGACT
* * * *
40719 CGTGGGCTTTTGAAAAGATGCCATTGACT
1 TGTGGGC-TTTGAAAGGGTGCCACTGACT
* * *
40748 TATGGGCTTTCAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
40776 TGTGGGCTTTGAAAGGATACTACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
40804 TGTGGGCTTTGAAA-GGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
40831 TGTAGGCGTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* * **
40860 TGTGGGCTTTAAAAAGGCACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
40888 TGTGGGCTTTAAAAAGGCGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
40916 TGTGGGCTTT
1 TGTGGGCTTT
40926 AAAAAAGAGG
Statistics
Matches: 535, Mismatches: 83, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
27 43 0.08
28 304 0.57
29 144 0.27
30 39 0.07
31 2 0.00
32 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:45968 original size:20 final size:20
Alignment explanation
Indices: 45945--46018 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 20
45935 AAGTACCCAG
* * * *
45945 ATGTATTGATACATTTTTCA
1 ATGTATCGATACATGTATGA
45965 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATGA
45985 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATGA
*
46005 ATGTATTGATACAT
1 ATGTATCGATACAT
46019 TCTTTAATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATGTATGA
Found at i:46008 original size:40 final size:40
Alignment explanation
Indices: 45945--46035 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
45935 AAGTACCCAG
* * *
45945 ATGTATTGATACATTTTTCAATGTATCGATACATGT-ATGA
1 ATGTATCGATACATGTATCAATGTATCGATACAT-TCATGA
* * * *
45985 ATGTATCGATACATGTATGAATGTATTGATACATTCTTTA
1 ATGTATCGATACATGTATCAATGTATCGATACATTCATGA
46025 ATGTATCGATA
1 ATGTATCGATA
46036 TATTCTGTCT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (40 bp):
ATGTATCGATACATGTATCAATGTATCGATACATTCATGA
Found at i:46027 original size:20 final size:19
Alignment explanation
Indices: 45945--46035 Score: 92
Period size: 20 Copynumber: 4.6 Consensus size: 19
45935 AAGTACCCAG
* *
45945 ATGTATTGATACATTTTTCA
1 ATGTATCGATACA-TTTTGA
*
45965 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTGA
*
45985 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTGA
* *
46005 ATGTATTGATACATTCTTTA
1 ATGTATCGATACATT-TTGA
46025 ATGTATCGATA
1 ATGTATCGATA
46036 TATTCTGTCT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.03
20 60 0.97
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (19 bp):
ATGTATCGATACATTTTGA
Found at i:60598 original size:19 final size:20
Alignment explanation
Indices: 60570--60623 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
60560 ATCAATACAT
*
60570 TGTATTGATACAAAACT-TA
1 TGTATCGATACAAAACTATA
** *
60589 TGTATCGATACATTTACTATT
1 TGTATCGATACA-AAACTATA
60610 TGTATCGATACAAA
1 TGTATCGATACAAA
60624 TTGTTGAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 11 0.41
20 3 0.11
21 13 0.48
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (20 bp):
TGTATCGATACAAAACTATA
Found at i:62111 original size:6 final size:7
Alignment explanation
Indices: 62042--62113 Score: 56
Period size: 7 Copynumber: 9.7 Consensus size: 7
62032 CTTCATACAT
*
62042 AAAAATA
1 AAAAACA
*
62049 AAAAATA
1 AAAAACA
62056 AAAAACAA
1 AAAAAC-A
62064 AAAAACA
1 AAAAACA
62071 AAAAA-A
1 AAAAACA
* *
62077 AAACAGA
1 AAAAACA
62084 AAAAACCCTAA
1 AAAAA--C--A
62095 AAAAACA
1 AAAAACA
62102 AAAAACA
1 AAAAACA
62109 AAAAA
1 AAAAA
62114 AATCAAGAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
6 5 0.09
7 36 0.65
8 7 0.13
9 1 0.02
11 6 0.11
ACGTcount: A:0.83, C:0.11, G:0.01, T:0.04
Consensus pattern (7 bp):
AAAAACA
Found at i:62126 original size:39 final size:38
Alignment explanation
Indices: 62055--62144 Score: 103
Period size: 39 Copynumber: 2.3 Consensus size: 38
62045 AATAAAAAAT
*
62055 AAAAAACAAAAAAACAAAAAAAAAACAGAAAAAA-CCCTA
1 AAAAAAC-AAAAAACAAAAAAAAAACAGAAAAAATCAC-A
* *
62094 AAAAAACAAAAAAC-AAAAAAAATCAAGAAAAAAATTACA
1 AAAAAACAAAAAACAAAAAAAAAAC-AG-AAAAAATCACA
62133 AAAAAACAAAAA
1 AAAAAACAAAAA
62145 GGGATCTAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
37 9 0.20
38 9 0.20
39 26 0.58
40 1 0.02
ACGTcount: A:0.81, C:0.12, G:0.02, T:0.04
Consensus pattern (38 bp):
AAAAAACAAAAAACAAAAAAAAAACAGAAAAAATCACA
Found at i:63412 original size:28 final size:28
Alignment explanation
Indices: 63357--63605 Score: 392
Period size: 28 Copynumber: 8.9 Consensus size: 28
63347 CGATCAACTC
*
63357 TTCAAAGCCCACAAG-CAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
63384 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
63412 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
63440 TTCAGAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
63468 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* *
63497 TTCAAAGCCCACAAGTCAGTAGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
63525 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
63553 TTTAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
63581 TTCAAAGCCCACAAGTTAGTGGCAC
1 TTCAAAGCCCACAAGTCAGTGGCAC
63606 TACATCCCGT
Statistics
Matches: 205, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
27 15 0.07
28 165 0.80
29 25 0.12
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:63511 original size:113 final size:113
Alignment explanation
Indices: 63357--63606 Score: 405
Period size: 113 Copynumber: 2.2 Consensus size: 113
63347 CGATCAACTC
*
63357 TTCAAAGCCCACAAG-CAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTAGCACCCTTTCAAAGC
* * *
63420 CCACAAGTTAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
63468 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTAGCACCCTTTCAAAGC
* *
63533 CCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
*
63581 TTCAAAGCCCACAAGTTAGTGGCACT
1 TTCAAAGCCCACAAGTCAGTGGCACT
63607 ACATCCCGTA
Statistics
Matches: 128, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
111 15 0.12
112 8 0.06
113 105 0.82
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (113 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTAGCACCCTTTCAAAGC
CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:63927 original size:28 final size:28
Alignment explanation
Indices: 63872--64299 Score: 570
Period size: 28 Copynumber: 14.9 Consensus size: 28
63862 CGATCAACTC
*
63872 TTCAAAGCCCACAAG-CAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
63899 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
63927 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
63955 TTCAGAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
63983 TTCAAAGCCCACAAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
64012 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
64040 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
64068 TTTAAAGCCCACAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* **
64096 TTCAAAGCCCACAAGTTAGTGGCACTATT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
64125 TTCAAAGCCCACAAGTCAATGGTATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
64153 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
64181 TTCAAAGCCCACAAATCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
* * *
64210 TTCAAAGCCCACAAGCCAGTGGTAACTCTT
1 TTCAAAGCCCACAAGTCAGTGG-CAC-CCT
*
64240 TTCAAAGCCCACACCAGTCAGTGGCAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGGC-AC-CCT
*
64272 TTCAAAGCCCACACAAGTTAGTGGCACC
1 TTCAAAG-CC-CACAAGTCAGTGGCACC
64300 TTTTTTTAAA
Statistics
Matches: 360, Mismatches: 31, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
27 15 0.04
28 216 0.60
29 71 0.20
30 20 0.06
31 2 0.01
32 30 0.08
33 2 0.01
34 4 0.01
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:64026 original size:113 final size:113
Alignment explanation
Indices: 63872--64299 Score: 626
Period size: 113 Copynumber: 3.7 Consensus size: 113
63862 CGATCAACTC
*
63872 TTCAAAGCCCACAAG-CAGTGGCA-TCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
* * *
63935 CCACAAGTCAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
*
63983 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
64048 CCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* * * * *
64096 TTCAAAGCCCACAAGTTAGTGGCACTATTTTCAAAGCCCACAAGTCAATGGTATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
*
64161 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAATCAGTGGCACTCTT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
* * *
64210 TTCAAAGCCCACAAGCCAGTGGTAACTCTTTTCAAAGCCCACACCAGTCAGTGGCAACTCTTTTC
1 TTCAAAGCCCACAAGTCAGTGG-CACTCTTTTCAAAGCCCACA--AGTCAGTGGC-AC-CCTTTC
*
64275 AAAGCCCACACAAGTTAGTGGCACC
61 AAAG-CC-CACAAGTCAGTGGCACC
64300 TTTTTTTAAA
Statistics
Matches: 286, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
111 15 0.05
112 8 0.03
113 186 0.65
114 23 0.08
115 18 0.06
117 8 0.03
118 1 0.00
119 9 0.03
120 2 0.01
121 16 0.06
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (113 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:64049 original size:85 final size:84
Alignment explanation
Indices: 63872--64302 Score: 578
Period size: 85 Copynumber: 5.0 Consensus size: 84
63862 CGATCAACTC
* *
63872 TTCAAAGCCCACAAG-CAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
*
63936 CACAAGTCAGTGGCACCCT
66 CACAAGTCAGTGGCATCCT
* *
63955 TTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTTTTCAAAGC
64020 CCACAAGTCAGTGGCATCCT
65 CCACAAGTCAGTGGCATCCT
*
64040 TTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* **
64105 CACAAGTTAGTGGCACTATT
66 CACAAGTCAGTGGCA-TCCT
* * * *
64125 TTCAAAGCCCACAAGTCAATGGTATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* *
64190 CACAAATCAGTGGCACTCTT
66 CACAAGTCAGTGGCA-TCCT
* * *
64210 TTCAAAGCCCACAAGCCAGTGGTAACTCTTTTCAAAGCCCACACCAGTCAGTGGCAACTCTTTTC
1 TTCAAAGCCCACAAGTCAGTGG-CAC-CCTTTCAAAGCCCACA--AGTCAGTGGC-AC-CTTTTC
*
64275 AAAGCCCACACAAGTTAGTGGCA-CCT
60 AAAG-CC-CACAAGTCAGTGGCATCCT
64301 TT
1 TT
64303 TTTTAAAAAA
Statistics
Matches: 309, Mismatches: 28, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
83 14 0.05
84 61 0.20
85 178 0.58
86 1 0.00
87 15 0.05
89 10 0.03
90 2 0.01
91 13 0.04
92 2 0.01
93 13 0.04
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (84 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
CACAAGTCAGTGGCATCCT
Found at i:64061 original size:515 final size:515
Alignment explanation
Indices: 63090--64122 Score: 2039
Period size: 515 Copynumber: 2.0 Consensus size: 515
63080 AACACTACGG
63090 CTACATCCCGTATTAGACTTTGTATCATGCAACCATGATAGAATTCCACATCATACATTCATAAT
1 CTACATCCCGTATTAGACTTTGTATCATGCAACCATGATAGAATTCCACATCATACATTCATAAT
63155 ATCATCATACATCATTTTTTTTATAATATCACTTCAGACCAGGTCTACTGAACCACTATTGAATC
66 ATCATCATACATCATTTTTTTTATAATATCACTTCAGACCAGGTCTACTGAACCACTATTGAATC
63220 CTTGGCAAAGACTTCAAGCTCTACAAACCCTGCGTCATTCGAGTAAAACTCTTTTCTTCTTATCA
131 CTTGGCAAAGACTTCAAGCTCTACAAACCCTGCGTCATTCGAGTAAAACTCTTTTCTTCTTATCA
63285 TCTTAGGCCAAGACCCTTGTGGCATTTGTCAAGAAATTATCGTCAAGAACTTCTATCTAGAACGA
196 TCTTAGGCCAAGACCCTTGTGGCATTTGTCAAGAAATTATCGTCAAGAACTTCTATCTAGAACGA
63350 TCAACTCTTCAAAGCCCACAAGCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
261 TCAACTCTTCAAAGCCCACAAGCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
*
63415 AAAGCCCACAAGTTAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
326 AAAGCCCACAAGTCAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
63480 AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTCAGT
391 AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTCAGT
63545 GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCA
456 GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCA
63605 CTACATCCCGTATTAGACTTTGTATCATGCAACCATGATAGAATTCCACATCATACATTCATAAT
1 CTACATCCCGTATTAGACTTTGTATCATGCAACCATGATAGAATTCCACATCATACATTCATAAT
63670 ATCATCATACATCATTTTTTTTATAATATCACTTCAGACCAGGTCTACTGAACCACTATTGAATC
66 ATCATCATACATCATTTTTTTTATAATATCACTTCAGACCAGGTCTACTGAACCACTATTGAATC
63735 CTTGGCAAAGACTTCAAGCTCTACAAACCCTGCGTCATTCGAGTAAAACTCTTTTCTTCTTATCA
131 CTTGGCAAAGACTTCAAGCTCTACAAACCCTGCGTCATTCGAGTAAAACTCTTTTCTTCTTATCA
*
63800 TCTTAGGCCAAGACCCTTGTGGCGTTTGTCAAGAAATTATCGTCAAGAACTTCTATCTAGAACGA
196 TCTTAGGCCAAGACCCTTGTGGCATTTGTCAAGAAATTATCGTCAAGAACTTCTATCTAGAACGA
63865 TCAACTCTTCAAAGCCCACAAGCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
261 TCAACTCTTCAAAGCCCACAAGCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
63930 AAAGCCCACAAGTCAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
326 AAAGCCCACAAGTCAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
*
63995 AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGT
391 AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTCAGT
64060 GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCA
456 GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCA
64120 CTA
1 CTA
64123 TTTTCAAAGC
Statistics
Matches: 515, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
515 515 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (515 bp):
CTACATCCCGTATTAGACTTTGTATCATGCAACCATGATAGAATTCCACATCATACATTCATAAT
ATCATCATACATCATTTTTTTTATAATATCACTTCAGACCAGGTCTACTGAACCACTATTGAATC
CTTGGCAAAGACTTCAAGCTCTACAAACCCTGCGTCATTCGAGTAAAACTCTTTTCTTCTTATCA
TCTTAGGCCAAGACCCTTGTGGCATTTGTCAAGAAATTATCGTCAAGAACTTCTATCTAGAACGA
TCAACTCTTCAAAGCCCACAAGCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTC
AAAGCCCACAAGTCAGTGGCACCCTTTCAGAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCAC
AAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTCAGT
GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCA
Found at i:78964 original size:20 final size:20
Alignment explanation
Indices: 78936--79056 Score: 98
Period size: 20 Copynumber: 5.5 Consensus size: 20
78926 AGATAGAGTA
* *
78936 TATCCATACATTGAAGAATG
1 TATCGATACATTGAAAAATG
* * *
78956 TATCGATACATTCATACATG
1 TATCGATACATTGAAAAATG
*
78976 CATCGATACATTGAAAAATG
1 TATCGATACATTGAAAAATG
78996 TATCGATACATCTTGGTAAAAGATAGAATG
1 TATCGATACA--TT-G----A-A-A-AATG
79026 TATCGATACATTGAAAAATG
1 TATCGATACATTGAAAAATG
79046 TATCGATACAT
1 TATCGATACAT
79057 CTAGGTTAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
20 55 0.68
21 1 0.01
22 3 0.04
23 2 0.02
27 2 0.02
28 3 0.04
29 1 0.01
30 14 0.17
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (20 bp):
TATCGATACATTGAAAAATG
Found at i:79094 original size:51 final size:51
Alignment explanation
Indices: 78977--79118 Score: 225
Period size: 51 Copynumber: 2.8 Consensus size: 51
78967 TCATACATGC
* *
78977 ATCGATACATTGAAAAATGTATCGATACATCTTGGT-AAAAGATAGAATGT
1 ATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAGACAGAATGT
79027 ATCGATACATTGAAAAATGTATCGATACATCTAGGTTAAAAAG-CAGAATGT
1 ATCGATACATTGAAAAATGTATCGATACATCTAGG-TAAAAAGACAGAATGT
* *
79078 ATCGATATATTAAAAAATGTATCGATACATCTAGGTAAAAA
1 ATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAA
79119 TGTGACTTTT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
50 40 0.47
51 41 0.48
52 5 0.06
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (51 bp):
ATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAAAGACAGAATGT
Found at i:79783 original size:20 final size:20
Alignment explanation
Indices: 79755--79801 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
79745 TTTCAAGCGC
*
79755 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTAACTT
*
79775 ATGTGTCGATACATTAACTT
1 ATGTATCGATACATTAACTT
79795 ATTGTAT
1 A-TGTAT
79802 TGATTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTAACTT
Found at i:80302 original size:106 final size:106
Alignment explanation
Indices: 80110--80307 Score: 245
Period size: 106 Copynumber: 1.9 Consensus size: 106
80100 CAATATCTAT
* * *
80110 GATCAAGTTGTAACATAAGAACTCTCATTTTTATAAAGAAGCAAACTACCATTTCAAACAACCAT
1 GATCAAGTTATAACATAAAAACTCTCATTTTTATAAAGAAGCAAACTACCATGTCAAACAACCAT
* *
80175 AGGAAATTCAATTAAAATTAAC-AAAATGTATAACATTTAC
66 AAGAAATTCAATCAAAATTAACTAAAATGTATAACATTTAC
* * * *** *
80215 GATCAAGTTATAACATAAAAACTTTCGTTTTTGATAAAGAAGTAAACTTTTATGTCAAACAACCT
1 GATCAAGTTATAACATAAAAACTCTCATTTTT-ATAAAGAAGCAAACTACCATGTCAAACAACCA
** *
80280 TAAGAAATTTGATCAAAGTTAACTAAAA
65 TAAGAAATTCAATCAAAATTAACTAAAA
80308 AGCGTATAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
105 28 0.37
106 44 0.58
107 4 0.05
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (106 bp):
GATCAAGTTATAACATAAAAACTCTCATTTTTATAAAGAAGCAAACTACCATGTCAAACAACCAT
AAGAAATTCAATCAAAATTAACTAAAATGTATAACATTTAC
Found at i:80961 original size:13 final size:13
Alignment explanation
Indices: 80943--80969 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80933 ACATTATGCT
80943 TTGTATCGATACA
1 TTGTATCGATACA
80956 TTGTATCGATACA
1 TTGTATCGATACA
80969 T
1 T
80970 ATTCATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:80966 original size:33 final size:32
Alignment explanation
Indices: 80924--80988 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
80914 CACACTCAGA
80924 TGTATCGATACATTATGC-TTTGTATCGATACAT
1 TGTATCGATACA-TATGCATTT-TATCGATACAT
*
80957 TGTATCGATACATATTCATTTTATCGATACAT
1 TGTATCGATACATATGCATTTTATCGATACAT
80989 GGACAATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.43
Consensus pattern (32 bp):
TGTATCGATACATATGCATTTTATCGATACAT
Found at i:81003 original size:20 final size:19
Alignment explanation
Indices: 80953--81009 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
80943 TTGTATCGAT
**
80953 ACATTGTATCGATACATAT
1 ACATTGTATCGATACATGG
* *
80972 TCATTTTATCGATACATGG
1 ACATTGTATCGATACATGG
80991 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
81010 AAACTGGCAC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:81072 original size:13 final size:13
Alignment explanation
Indices: 81054--81106 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
81044 AGATACATAG
81054 TACATTGTATCGA
1 TACATTGTATCGA
*
81067 TACATTGTATGGA
1 TACATTGTATCGA
81080 TACA-TG-AT-G-
1 TACATTGTATCGA
81089 -A-ATTGTATCGA
1 TACATTGTATCGA
81100 TACATTG
1 TACATTG
81107 CTTGTAAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 20 0.61
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:81082 original size:33 final size:33
Alignment explanation
Indices: 81038--81106 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
81028 TTACCACTAT
81038 TTGTATAGATACAT-A-GTACATTGTATCGATACA
1 TTGTATAGATACATGATG-A-ATTGTATCGATACA
*
81071 TTGTATGGATACATGATGAATTGTATCGATACA
1 TTGTATAGATACATGATGAATTGTATCGATACA
81104 TTG
1 TTG
81107 CTTGTAAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
33 30 0.91
34 2 0.06
35 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (33 bp):
TTGTATAGATACATGATGAATTGTATCGATACA
Found at i:84843 original size:34 final size:35
Alignment explanation
Indices: 84805--84871 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
84795 CCTTACAACA
84805 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
84839 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
84872 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:85368 original size:13 final size:13
Alignment explanation
Indices: 85350--85375 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85340 CTATTTATGA
85350 TGTATCGATACAC
1 TGTATCGATACAC
85363 TGTATCGATACAC
1 TGTATCGATACAC
85376 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:85469 original size:14 final size:14
Alignment explanation
Indices: 85452--85480 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
85442 GTGAACAGTG
85452 TGAACAGTGATGTA
1 TGAACAGTGATGTA
85466 TGAACAGTGATGTA
1 TGAACAGTGATGTA
85480 T
1 T
85481 CGATACATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (14 bp):
TGAACAGTGATGTA
Found at i:85663 original size:20 final size:20
Alignment explanation
Indices: 85600--85670 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
85590 GCCAATGTCC
**
85600 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
85620 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
85640 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
85660 TGTATCGATAC
1 TGTATCGATAC
85671 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:85736 original size:21 final size:21
Alignment explanation
Indices: 85710--85750 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
85700 GTCAACCTTG
85710 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
85731 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
85751 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:91965 original size:19 final size:19
Alignment explanation
Indices: 91941--92011 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
91931 AACGATACAT
*
91941 TGTATCGGTACAACACTTA
1 TGTATCGATACAACACTTA
** *
91960 TGTATCGATACATTTACTGTT
1 TGTATCGATACA-ACACT-TA
*
91981 TGTATCAATACAACACTTA
1 TGTATCGATACAACACTTA
92000 TGTATCGATACA
1 TGTATCGATACA
92012 TTTACTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 23 0.56
20 6 0.15
21 12 0.29
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:91986 original size:21 final size:20
Alignment explanation
Indices: 91955--92032 Score: 86
Period size: 21 Copynumber: 3.9 Consensus size: 20
91945 TCGGTACAAC
*
91955 ACTTATGTATCGATACATTT
1 ACTTTTGTATCGATACATTT
* **
91975 ACTGTTTGTATCAATACA-AC
1 ACT-TTTGTATCGATACATTT
*
91995 ACTTATGTATCGATACATTT
1 ACTTTTGTATCGATACATTT
92015 ACTATTTGTATCGATACA
1 ACT-TTTGTATCGATACA
92033 AATTACTAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
19 12 0.26
20 9 0.20
21 25 0.54
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (20 bp):
ACTTTTGTATCGATACATTT
Found at i:91986 original size:40 final size:40
Alignment explanation
Indices: 91940--92033 Score: 161
Period size: 40 Copynumber: 2.4 Consensus size: 40
91930 TAACGATACA
* *
91940 TTGTATCGGTACAACACTTATGTATCGATACATTTACTGT
1 TTGTATCGATACAACACTTATGTATCGATACATTTACTAT
*
91980 TTGTATCAATACAACACTTATGTATCGATACATTTACTAT
1 TTGTATCGATACAACACTTATGTATCGATACATTTACTAT
92020 TTGTATCGATACAA
1 TTGTATCGATACAA
92034 ATTACTAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (40 bp):
TTGTATCGATACAACACTTATGTATCGATACATTTACTAT
Found at i:92960 original size:49 final size:49
Alignment explanation
Indices: 92881--93380 Score: 360
Period size: 49 Copynumber: 10.8 Consensus size: 49
92871 TTAAAGATGT
92881 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* * * * *
92930 CAATGTGCTGATTCAAGACCAACGACATTGGTCTTAAAGATGAAGGCGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* * * * * *
92979 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCATAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
*
93028 CAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* *
93077 CAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* * * ** * * * * *
93116 CAATGTACTGATTTAAGGCCAGTGACATTAGTCTCAAAGA-CAAGGTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* *
93164 CAATATGCTGATTCATGGCCAACGATATTGGGC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* * ** * * * * *
93203 CAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
*
93252 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T----GTGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
* * ** * * * * *
93291 CAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGC
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
*
93340 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGA
1 CAATATGCTGATTCAAGGCCAACGATATTGGACTTA-AAGA
93381 AGATGCCACC
Statistics
Matches: 355, Mismatches: 64, Indels: 63
0.74 0.13 0.13
Matches are distributed among these distances:
39 91 0.26
40 2 0.01
43 2 0.01
45 2 0.01
48 30 0.08
49 225 0.63
50 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
Found at i:93044 original size:147 final size:145
Alignment explanation
Indices: 92872--93282 Score: 466
Period size: 147 Copynumber: 2.9 Consensus size: 145
92862 TTAGGAATGT
* *
92872 TAAAGATGTCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTG
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTG
* *
92937 CTGATTCAAGACCAACGACATTGGTCTTAAAGATGAAGGCGCCAATGTGCTGATTCAAGGCCAGC
66 CTGATTCAAGGCCAGCGACATTGGTCTTAAAG-T-AAGGCGCCAATGTGCTGATTCAAGGCCAGC
93002 GACATTGGTCAT-AAAGA
129 GACATTGGTC-TCAAAGA
* *
93019 TAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGGTGCCAATATG
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTG
* * * * *
93084 CTGATTCAAGGCCAGCGATATTGGGCTT---GT-----GCCAATGTACTGATTTAAGGCCAGTGA
66 CTGATTCAAGGCCAGCGACATTGGTCTTAAAGTAAGGCGCCAATGTGCTGATTCAAGGCCAGCGA
*
93141 CATTAGTCTCAAAGA
131 CATTGGTCTCAAAGA
* * * *
93156 -CAAGGTGCCAATATGCTGATTCATGGCCAACGATATTGGGC-T-----T----GTGCCAATGTA
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTG
* *
93210 CTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGATTCAAGGCCAGC
66 CTGATTCAAGGCCAGCGACATTGGTCTTAAAG-T-AAGGCGCCAATGTGCTGATTCAAGGCCAGC
*
93275 GATATTGG
129 GACATTGG
93283 ACTTGTGCCA
Statistics
Matches: 226, Mismatches: 27, Indels: 33
0.79 0.09 0.12
Matches are distributed among these distances:
126 34 0.15
129 1 0.00
130 2 0.01
135 1 0.00
136 65 0.29
137 36 0.16
143 1 0.00
144 1 0.00
147 85 0.38
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (145 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTG
CTGATTCAAGGCCAGCGACATTGGTCTTAAAGTAAGGCGCCAATGTGCTGATTCAAGGCCAGCGA
CATTGGTCTCAAAGA
Found at i:93297 original size:88 final size:88
Alignment explanation
Indices: 93024--93374 Score: 517
Period size: 88 Copynumber: 4.0 Consensus size: 88
93014 AAAGATAAAG
* * ** * * * * * *
93024 GTGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
*
93089 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGACTT
* * * *
93112 GTGCCAATGTACTGATTTAAGGCCAGTGACATTAGTCTCAAAG--ACAAGGTGCCAATATGCTGA
1 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTA-AAGGCGCCAATATGCTGA
* * *
93175 TTCATGGCCAACGATATTGGGCTT
65 TTCAAGGCCAGCGATATTGGACTT
93199 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
1 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
93264 TCAAGGCCAGCGATATTGGACTT
66 TCAAGGCCAGCGATATTGGACTT
93287 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
1 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
93352 TCAAGGCCAGCGATATTGGACTT
66 TCAAGGCCAGCGATATTGGACTT
93375 AGAAGAAGAT
Statistics
Matches: 240, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
87 80 0.33
88 159 0.66
89 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (88 bp):
GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTT
Found at i:93315 original size:175 final size:175
Alignment explanation
Indices: 93024--93370 Score: 516
Period size: 175 Copynumber: 2.0 Consensus size: 175
93014 AAAGATAAAG
* * * *
93024 GTGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATATACTGATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGCGCCAATATGCTGAT
* *
93089 TCAAGGCCAGCGATATTGGGCTTGTGCCAATGTACTGATTTAAGGCCAGTGACATTAGTCTCAAA
66 TCAAGGCCAGCGATATTGGACTTGTGCCAATGTACTGATTCAAGGCCAGTGACATTAGTCTCAAA
* *
93154 G-ACAAGGTGCCAATATGCTGATTCATGGCCAACGATATTGGGCTT
131 GTA-AAGGCGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTT
* ** * * *
93199 GTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAAGTTAAAGGCGCCAATATGCTGAT
1 GTGCCAATATACTGATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGCGCCAATATGCTGAT
* *
93264 TCAAGGCCAGCGATATTGGACTTGTGCCAATGTACTGATTCAAGGCCAGTGACATTGGTCTTAAA
66 TCAAGGCCAGCGATATTGGACTTGTGCCAATGTACTGATTCAAGGCCAGTGACATTAGTCTCAAA
*
93329 GTTAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGG
131 G-TAAAGGCGCCAATATGCTGATTCAAGGCCAACGATATTGG
93371 ACTTAGAAGA
Statistics
Matches: 153, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
175 117 0.76
176 35 0.23
177 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (175 bp):
GTGCCAATATACTGATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGCGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTTGTGCCAATGTACTGATTCAAGGCCAGTGACATTAGTCTCAAA
GTAAAGGCGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTT
Found at i:93437 original size:29 final size:29
Alignment explanation
Indices: 93384--93484 Score: 100
Period size: 28 Copynumber: 3.4 Consensus size: 29
93374 TAGAAGAAGA
93384 TGCCACCAACTTGTGTGGGCTTTTGAAAGGGT
1 TGCCA-CAACTTGTGT--GCTTTTGAAAGGGT
93416 TG-CATCAACTTGTGTGCTTTTG-AA-GGT
1 TGCCA-CAACTTGTGTGCTTTTGAAAGGGT
* * *
93443 TGCCACTGACTTGTGGGCTTTTGAAAGGGG
1 TGCCAC-AACTTGTGTGCTTTTGAAAGGGT
93473 TGCCACCAACTT
1 TGCCA-CAACTT
93485 ATGGGCTTAC
Statistics
Matches: 59, Mismatches: 5, Indels: 12
0.78 0.07 0.16
Matches are distributed among these distances:
27 6 0.10
28 18 0.31
29 9 0.15
30 11 0.19
31 13 0.22
32 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.33
Consensus pattern (29 bp):
TGCCACAACTTGTGTGCTTTTGAAAGGGT
Found at i:93562 original size:34 final size:33
Alignment explanation
Indices: 93500--93663 Score: 146
Period size: 34 Copynumber: 5.1 Consensus size: 33
93490 CTTACAAGAA
* * * * *
93500 AAAAGGATGCCACGGAGGTATGGGCTTAAAAGGG
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAA-GG
** *
93534 AAAAGGGTGCCACAGAGTCATGGACTTAAAAAG
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG
*
93567 AAAA-GGTGCCA-TGAAGTTGTGGACTT------
1 AAAAGGGTGCCACAG-AGTTGTGGACTTAAAAGG
93593 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG
* *
93626 AAAAGGAGTGCCACGGAGTTGTGGGCTTAAAAGG
1 AAAAGG-GTGCCACAGAGTTGTGGACTTAAAAGG
93660 AAAA
1 AAAA
93664 AGATGCCATG
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.04
27 19 0.18
28 1 0.01
31 1 0.01
32 17 0.16
33 11 0.10
34 55 0.51
ACGTcount: A:0.37, C:0.12, G:0.33, T:0.18
Consensus pattern (33 bp):
AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG
Found at i:93600 original size:59 final size:61
Alignment explanation
Indices: 93534--93659 Score: 184
Period size: 59 Copynumber: 2.1 Consensus size: 61
93524 CTTAAAAGGG
*
93534 AAAAGGGTGCCACAGAGTCATGGACTTAAAAAGAAAA-G-GTGCCATGAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTCATGGACTTAAAAAGAAAAGGAGTGCCACGAAGTTGTGGACTT
** * * *
93593 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGAGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACAGAGTCATGGACTTAAAAAGAAAAGGAGTGCCACGAAGTTGTGGACTT
93654 AAAAGG
1 AAAAGG
93660 AAAAAGATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 34 0.58
60 1 0.02
61 24 0.41
ACGTcount: A:0.36, C:0.13, G:0.33, T:0.19
Consensus pattern (61 bp):
AAAAGGGTGCCACAGAGTCATGGACTTAAAAAGAAAAGGAGTGCCACGAAGTTGTGGACTT
Found at i:93604 original size:27 final size:27
Alignment explanation
Indices: 93534--93625 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 27
93524 CTTAAAAGGG
**
93534 AAAAGGGTGCCACAGAGTCATGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
*
93561 AAAAAGAAAAGGTGCCA-TGAAGTTGTGGACTT
1 -AAAAG----GGTGCCACAG-AGTTGTGGACTT
93593 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
93620 AAAAGG
1 AAAAGG
93626 AAAAGGAGTG
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
27 25 0.46
28 6 0.11
31 6 0.11
32 17 0.31
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTT
Found at i:93663 original size:93 final size:94
Alignment explanation
Indices: 93500--93673 Score: 226
Period size: 93 Copynumber: 1.9 Consensus size: 94
93490 CTTACAAGAA
* *
93500 AAAAGGATGCCACGGAGGTATGGGCTTAAAAGGGAAAAGGGTGCCACAGAGTCATGGACTTAAAA
1 AAAAGGATGCCACAGAGGTATGGACTTAAAAGGGAAAAGGGTGCCACAGAGTCATGGACTTAAAA
*
93565 AG-AAAAGGTGCCATGAAGTTGTGGACTT
66 AGAAAAAGATGCCATGAAGTTGTGGACTT
* * * * ** *
93593 AAAAGGGTGCCACAGAGTTGTGGACTTAAAA-GGAAAAGGAGTGCCACGGAGTTGTGGGCTTAAA
1 AAAAGGATGCCACAGAGGTATGGACTTAAAAGGGAAAAGG-GTGCCACAGAGTCATGGACTTAAA
*
93657 AGGAAAAAGATGCCATG
65 AAGAAAAAGATGCCATG
93674 GACTTATAGG
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
92 8 0.12
93 48 0.71
94 12 0.18
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.18
Consensus pattern (94 bp):
AAAAGGATGCCACAGAGGTATGGACTTAAAAGGGAAAAGGGTGCCACAGAGTCATGGACTTAAAA
AGAAAAAGATGCCATGAAGTTGTGGACTT
Found at i:93671 original size:33 final size:34
Alignment explanation
Indices: 93593--93671 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 34
93583 TTGTGGACTT
*
93593 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGA
* * *
93627 AAAGGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
1 AAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGA
93661 AAAAGA-TGCCA
1 AAAAGAGTGCCA
93672 TGGACTTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 5 0.12
34 35 0.88
ACGTcount: A:0.38, C:0.13, G:0.33, T:0.16
Consensus pattern (34 bp):
AAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGA
Found at i:93686 original size:33 final size:34
Alignment explanation
Indices: 93617--93686 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 34
93607 GAGTTGTGGA
* * * *
93617 CTTAAAAGGAAAAGGAGTGCCACGGAGTTGTGGG
1 CTTAAAAGGAAAAAGAGTGCCACGGACTTATAGG
*
93651 CTTAAAAGGAAAAAGA-TGCCATGGACTTATAGG
1 CTTAAAAGGAAAAAGAGTGCCACGGACTTATAGG
93684 CTT
1 CTT
93687 TTGAAGGTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
33 16 0.52
34 15 0.48
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (34 bp):
CTTAAAAGGAAAAAGAGTGCCACGGACTTATAGG
Found at i:95195 original size:1 final size:1
Alignment explanation
Indices: 95191--95289 Score: 63
Period size: 1 Copynumber: 99.0 Consensus size: 1
95181 CTTTTTGCTA
* * * * * ** ** * * * *
95191 TTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTGGTTTTTTTTGGTTTTTTTTGTTTGTTTTGTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
95256 TTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
95290 GCGGAGGACA
Statistics
Matches: 72, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (1 bp):
T
Found at i:95231 original size:10 final size:10
Alignment explanation
Indices: 95216--95290 Score: 79
Period size: 10 Copynumber: 7.8 Consensus size: 10
95206 TGTTTGTTTG
95216 TTTTTTTGGT
1 TTTTTTTGGT
95226 TTTTTTTGGT
1 TTTTTTTGGT
95236 TTTTTTT-GT
1 TTTTTTTGGT
*
95245 TTGTTTTGTGT
1 TTTTTTTG-GT
95256 TTTTTTT--T
1 TTTTTTTGGT
*
95264 TGTTTTTTTGT
1 T-TTTTTTGGT
95275 TTTTTTT--T
1 TTTTTTTGGT
95283 TTTTTTTG
1 TTTTTTTG
95291 CGGAGGACAC
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
8 10 0.18
9 14 0.25
10 23 0.40
11 10 0.18
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (10 bp):
TTTTTTTGGT
Found at i:95260 original size:30 final size:29
Alignment explanation
Indices: 95206--95290 Score: 104
Period size: 30 Copynumber: 3.0 Consensus size: 29
95196 TTTGTTTGTT
* *
95206 TGTTTGTTTGTTTTTTTGGTTTTTTTTGG
1 TGTTTTTTTGTTTTTTTTGTTTTTTTTGG
*
95235 T-TTTTTTTGTTTGTTTTGTGTTTTTTTT-T
1 TGTTTTTTTGTTT-TTTT-TGTTTTTTTTGG
95264 TGTTTTTTTGTTTTTTTT-TTTTTTTTG
1 TGTTTTTTTGTTTTTTTTGTTTTTTTTG
95291 CGGAGGACAC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
27 8 0.16
28 11 0.22
29 10 0.20
30 20 0.41
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (29 bp):
TGTTTTTTTGTTTTTTTTGTTTTTTTTGG
Found at i:95260 original size:40 final size:40
Alignment explanation
Indices: 95194--95290 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 40
95184 TTTGCTATTT
*
95194 TTTTTGTTTGTTTG-TTTGTTTGTTTTTTTGGTT-TTTTTTGG
1 TTTTT-TTTGTTTGTTTTGTGTGTTTTTTT--TTGTTTTTTGG
*
95235 TTTTTTTTGTTTGTTTTGTGT-TTTTTTTTTGTTTTTTTG
1 TTTTTTTTGTTTGTTTTGTGTGTTTTTTTTTGTTTTTTGG
*
95274 TTTTTTTT-TTTTTTTTG
1 TTTTTTTTGTTTGTTTTG
95291 CGGAGGACAC
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
38 10 0.20
39 15 0.29
40 15 0.29
41 11 0.22
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (40 bp):
TTTTTTTTGTTTGTTTTGTGTGTTTTTTTTTGTTTTTTGG
Found at i:95277 original size:8 final size:8
Alignment explanation
Indices: 95192--95287 Score: 92
Period size: 8 Copynumber: 11.9 Consensus size: 8
95182 TTTTTGCTAT
95192 TTTTTTTG
1 TTTTTTTG
*
95200 TTTGTTTG
1 TTTTTTTG
*
95208 TTTGTTTG
1 TTTTTTTG
95216 TTTTTTTGG
1 TTTTTTT-G
95225 TTTTTTTTGG
1 -TTTTTTT-G
95235 TTTTTTTTG
1 -TTTTTTTG
95244 TTTGTTTTG
1 TTT-TTTTG
*
95253 --TGTTT-
1 TTTTTTTG
95258 TTTTTTTG
1 TTTTTTTG
95266 TTTTTTTG
1 TTTTTTTG
95274 TTTTTTT-
1 TTTTTTTG
95281 TTTTTTT
1 TTTTTTT
95288 TTGCGGAGGA
Statistics
Matches: 78, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
6 3 0.04
7 12 0.15
8 39 0.50
9 7 0.09
10 17 0.22
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:100277 original size:13 final size:13
Alignment explanation
Indices: 100259--100283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100249 TTCAACAATT
100259 TGTATCGATACAA
1 TGTATCGATACAA
100272 TGTATCGATACA
1 TGTATCGATACA
100284 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:107387 original size:6 final size:6
Alignment explanation
Indices: 107369--107406 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
107359 AGTCAAAAGT
* *
107369 AAACAA AAA-AA AAACAA AAACAA AAACAC ACACAA AAA
1 AAACAA AAACAA AAACAA AAACAA AAACAA AAACAA AAA
107407 AGTGCAAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:108686 original size:30 final size:29
Alignment explanation
Indices: 108612--109003 Score: 266
Period size: 30 Copynumber: 12.7 Consensus size: 29
108602 ATACCTTCTT
* *
108612 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGC-AT-TTTTCCC
*
108643 AAAGCCCACGACTCAGTGGCATTTTGTCCC
1 AAAGTCCACGACTCAGTGGCATTTT-TCCC
*
108673 AAAGTCCATGACTCAGTGGCATTTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCA--TTTTTC-CC
* *
108705 AAAGT--ACGTAACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACG--ACTCAGTGGC-AT-TTTTCCC
*
108736 AAAGCCCACGACTCAGTGGCATTTTGTCCC
1 AAAGTCCACGACTCAGTGGCATTTT-TCCC
* *
108766 AAAGTCCACGACTTAGTGGCATTTTTTTCC
1 AAAGTCCACGACTCAGTGGCA-TTTTTCCC
*** * ***
108796 AAAGTATGCAACTCAGTGGCAATCTCTTTTTT
1 AAAGTCCACGACTCAGTGGC-AT-T-TTTCCC
*
108828 AAAGTCCATGACTCAGTGGCATCTTTTCCTC
1 AAAGTCCACGACTCAGTGGCAT-TTTTCC-C
* *
108859 AAAGCCCACGACTCAGTGACATTTTATCCC
1 AAAGTCCACGACTCAGTGGCATTTT-TCCC
* **
108889 AAAGTCCACGACTCAGCGGCATTTTTTTTC
1 AAAGTCCACGACTCAGTGGCA-TTTTTCCC
* * * ***
108919 AAAGTACGCAACTCAGTGGCAATCTTTTTTTTT
1 AAAGTCCACGACTCAGTGGC-A---TTTTTCCC
*
108952 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCAT-TTTTC-CC
* *
108983 AAAGTCCACAACTCTGTGGCA
1 AAAGTCCACGACTCAGTGGCA
109004 CTCTTTTAAA
Statistics
Matches: 289, Mismatches: 49, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
29 5 0.02
30 116 0.40
31 94 0.33
32 45 0.16
33 29 0.10
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (29 bp):
AAAGTCCACGACTCAGTGGCATTTTTCCC
Found at i:108771 original size:93 final size:92
Alignment explanation
Indices: 108622--109031 Score: 386
Period size: 93 Copynumber: 4.5 Consensus size: 92
108612 AAAGTCCACG
*
108622 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCATGACTC
1 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTC
*
108687 AGTGGCATTTTTTTCTCCAAAGTACGTA
66 AGTGGCATTTTTTT-TCCAAAGTACGCA
*
108715 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTT
1 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTC
*
108780 AGTGGCA-TTTTTTTCCAAAGTATGCA
66 AGTGGCATTTTTTTTCCAAAGTACGCA
* * * * *
108806 ACTCAGTGGCAATCTCTTTTTTAAAGTCCATGACTCAGTGGCATCTTT-TCCTCAAAGCCCACGA
1 ACTCAGTGGCAATCTC-TTCTCAAAGCCCACGACTCAGTGGCAT-TTTGTCC-CAAAGTCCACGA
* * * * * *
108870 CTCAGTGACA-TTTTATCCCAAAGTCCACG
63 CTCAGTGGCATTTTTTTTCCAAAGTACGCA
* * * * ** * * * ***
108899 ACTCAGCGGC-ATTTTTTTTCAAAGTACGCAACTCAGTGGCAATCTTTTTTTTTAAAGTCCACGA
1 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGC-A--TTTTGTCCCAAAGTCCACGA
* * *
108963 CTCAGTGGCATCTTTTCTT-CAAAGTCCACA
63 CTCAGTGGCAT-TTTTTTTCCAAAGTACGCA
* * * *
108993 ACTCTGTGGC-A-CTCTT-TTAAAGCCCACAACTCCGTGGCA
1 ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCA
109032 CCCTTTTAAA
Statistics
Matches: 266, Mismatches: 42, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
91 48 0.18
92 53 0.20
93 139 0.52
94 21 0.08
95 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (92 bp):
ACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTC
AGTGGCATTTTTTTTCCAAAGTACGCA
Found at i:108832 original size:123 final size:119
Alignment explanation
Indices: 108606--109003 Score: 419
Period size: 123 Copynumber: 3.2 Consensus size: 119
108596 CTTCAAATAC
* * * * * * *
108606 CTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACGACTCAGTGGCATTTTGTC
1 CTTCTCAAAGCCCACGACTCAGTGGC-AT-TTTTCCCAAAGTCCACGACTCAGTGGCATTTTTTT
108671 CCAAAGTCCATG--ACTCAGTGGC-AT-TTTTTTCTCCAAAGTACGTAACTCAGTGGCAATCT
64 CCAAAGT--ATGCAACTCAGTGGCAATCTTTTTT-T--AAAGTACGT-ACTCAGTGGC-ATCT
*
108730 CTTCTCAAAGCCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTTAGTGGCATTTTTTTC
1 CTTCTCAAAGCCCACGACTCAGTGGCATTTT-TCCCAAAGTCCACGACTCAGTGGCATTTTTTTC
* *
108795 CAAAGTATGCAACTCAGTGGCAATCTCTTTTTTAAAGTCCATGACTCAGTGGCATCT
65 CAAAGTATGCAACTCAGTGGCAATCT-TTTTTTAAAGTACGT-ACTCAGTGGCATCT
* * *
108852 TTTCCTCAAAGCCCACGACTCAGTGACATTTTATCCCAAAGTCCACGACTCAGCGGCATTTTTTT
1 CTT-CTCAAAGCCCACGACTCAGTGGCATTTT-TCCCAAAGTCCACGACTCAGTGGCATTTTTTT
* *
108917 TCAAAGTACGCAACTCAGTGGCAATCTTTTTTTTTAAAGTCCACG-ACTCAGTGGCATCT
64 CCAAAGTATGCAACTCAGTGGCAATC--TTTTTTTAAAGT--ACGTACTCAGTGGCATCT
* * * *
108976 TTTCTTCAAAGTCCACAACTCTGTGGCA
1 CTTC-TCAAAGCCCACGACTCAGTGGCA
109004 CTCTTTTAAA
Statistics
Matches: 238, Mismatches: 24, Indels: 24
0.83 0.08 0.08
Matches are distributed among these distances:
121 3 0.01
122 8 0.03
123 145 0.61
124 73 0.31
125 3 0.01
126 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (119 bp):
CTTCTCAAAGCCCACGACTCAGTGGCATTTTTCCCAAAGTCCACGACTCAGTGGCATTTTTTTCC
AAAGTATGCAACTCAGTGGCAATCTTTTTTTAAAGTACGTACTCAGTGGCATCT
Found at i:109009 original size:64 final size:63
Alignment explanation
Indices: 108889--109010 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 63
108879 ATTTTATCCC
* *
108889 AAAGTCCACGACTCAGCGGCATTTTTTTTCAAAGTACGCAACTCAGTGGCAATCTTTTTTTTT
1 AAAGTCCACGACTCAGCGGCATTTTTCTTCAAAGTACACAACTCAGTGGCAATCTTTTTTTTT
* * * *
108952 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACAACTCTGTGGCACTCTTTT
1 AAAGTCCACGACTCAGCGGCAT-TTTTCTTCAAAGTACACAACTCAGTGGCAATCTTTT
109011 AAAGCCCACA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
63 21 0.40
64 31 0.60
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (63 bp):
AAAGTCCACGACTCAGCGGCATTTTTCTTCAAAGTACACAACTCAGTGGCAATCTTTTTTTTT
Found at i:109019 original size:28 final size:27
Alignment explanation
Indices: 108984--109180 Score: 196
Period size: 27 Copynumber: 7.0 Consensus size: 27
108974 CTTTTCTTCA
*
108984 AAGTCCACAACTCTGTGGCACTCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
* *
109011 AAAGCCCACAACTCCGTGGCACCCTTTT
1 -AAGTCCACAACTCTGTGGCACCCTTTT
**
109039 AAAGTCCACAACTCCATGGCACCTTGTTTCTTTT
1 -AAGTCCACAACTCTGTGGCACC------CTTTT
* * *
109073 AAGTCCACAATTTTGTGGAACCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
*
109100 AAGTCTACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
*
109127 AAGTCCACAACTCTGTGGCAGCCTTTT
1 AAGTCCACAACTCTGTGGCACCCTTTT
* * *
109154 AAGCCCACACCTCCGTGGCATCCCTTT
1 AAGTCCACAACTCTGTGGCA-CCCTTT
109181 CTTCTTACAG
Statistics
Matches: 142, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
27 70 0.49
28 50 0.35
33 17 0.12
34 5 0.04
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (27 bp):
AAGTCCACAACTCTGTGGCACCCTTTT
Found at i:109059 original size:87 final size:89
Alignment explanation
Indices: 108948--109139 Score: 241
Period size: 87 Copynumber: 2.2 Consensus size: 89
108938 CAATCTTTTT
* * * *
108948 TTTTAAAGTCCACGACT-CAGTGGCATC-T-TTTCTTCAAAGTCCACAACTCTGTGGCACTCTTT
1 TTTTAAAGTCCACAACTCCAGTGGCACCTTGTTTCTTCAAAGTCCACAACTCTGTGGAACCCTTT
109010 TAAAGCCCACAACTCCGTGGCACCC
66 T-AAGCCCACAACTCCGTGGCACCC
** * *
109035 TTTTAAAGTCCACAACTCCA-TGGCACCTTGTTTCTTTTAAGTCCACAATTTTGTGGAACCCTTT
1 TTTTAAAGTCCACAACTCCAGTGGCACCTTGTTTCTTCAAAGTCCACAACTCTGTGGAACCCTTT
* * *
109099 TAAGTCTACAACTCTGTGGCACCC
66 TAAGCCCACAACTCCGTGGCACCC
109123 TTTT-AAGTCCACAACTC
1 TTTTAAAGTCCACAACTC
109140 TGTGGCAGCC
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
87 35 0.38
88 27 0.30
89 29 0.32
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (89 bp):
TTTTAAAGTCCACAACTCCAGTGGCACCTTGTTTCTTCAAAGTCCACAACTCTGTGGAACCCTTT
TAAGCCCACAACTCCGTGGCACCC
Found at i:109450 original size:91 final size:92
Alignment explanation
Indices: 109309--109965 Score: 928
Period size: 91 Copynumber: 7.0 Consensus size: 92
109299 GGCACCTTCA
*
109309 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
*
109374 ACTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
109401 T-TTTAAGTCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTCATCTTTAAGACCAATGTC
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
109465 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * **
109492 -CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACCTTGTCTTTAAGACCAATGTC
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
* *
109556 GCTGGCCTTGAATTAGCACATTAGCA-
66 GCTGGCCTTGAATCAGCACATTGGCAC
109582 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
*
109647 GCTGGCCTTGAATCAGCATATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* **
109674 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGTCTTTAAGACCAATGTC
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
*
109738 ACTGGCCTTGAATCAGCACATTGGCA-
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
109764 TCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGACGCCTTTGTCATCTTTAAGTCCAA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC----TCATCTTTAAGACCAA
*
109829 TGTCACTGGCCTTGAATCAGCACATTGGCACCTTC
62 TGTCGCTGGCCTTGAATCAGCACATTGGCA----C
* * * *
109864 ATCTTTAAGACCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCATCATCTTTAAAACCC
1 -TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC--C-TCATCTTTAAGA-CC
* *
109929 AATGTCGTTGGCCTTGAATCAGCACATTGGCAT
60 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
109962 TCTT
1 TCTT
109966 CTCATCTTCA
Statistics
Matches: 509, Mismatches: 38, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
91 379 0.74
92 1 0.00
95 43 0.08
97 4 0.01
101 48 0.09
102 33 0.06
104 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTC
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:109576 original size:182 final size:185
Alignment explanation
Indices: 109203--109961 Score: 1048
Period size: 182 Copynumber: 4.0 Consensus size: 185
109193 CACAACTTCG
*
109203 TGGCATCTTTAAG-CCAAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAA
1 TGGCATCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC-T--TCATCTTTAA
109267 GACCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCGCTGGC
62 GACCAATGTCACTGGCCTTGAATCAGCACATTGGCA-C--CA-CTTTAAGACCAATATCGCTGGC
* *
109332 CTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
123 CTTGAATCAGCATATTGACACCTTATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
*
109395 TGGCA-CTTTTAAGTCCAATATCGCTGGCCTTGAATCATCATATTGGCACC-TCATCTTTAAGAC
1 TGGCATC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGAC
* * *
109458 CAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-CTTTAAGTCCAATATCGTTGGCCTTGAAT
65 CAATGTCACTGGCCTTGAATCAGCACATTGGCACCACTTTAAGACCAATATCGCTGGCCTTGAAT
* * *
109521 CAGCATATTGACACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACAT
130 CAGCATATTGACACCTTATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
*
109577 TAGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TCATCTTTAAGACC
1 TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACC
* * *
109641 AATGTCGCTGGCCTTGAATCAGCATATTGGCA-C-CTTTAAGTCCAATATCGCTGGCCTTGAATC
66 AATGTCACTGGCCTTGAATCAGCACATTGGCACCACTTTAAGACCAATATCGCTGGCCTTGAATC
*
109704 AGCATATTGACACCTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
131 AGCATATTGACACCTTATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
* * *
109759 TGGCATCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGACGCCTTTGTCATCTTTAAG
1 TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAG
* *
109824 TCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATCGCTGGCC
63 ACCAATGTCACTGGCCTTGAATCAGCACATTGGCA-C--CA-CTTTAAGACCAATATCGCTGGCC
* * * **
109889 TTGAATCAGCATATTGGCGCCTTCATCATCTTTAAAACCCAATGTCGTTGGCCTTGAATCAGCAC
124 TTGAATCAGCATATTGACACC-T--T-ATCTTTAAGA-CCAATGTCACTGGCCTTGAATCAGCAC
109954 AT
184 AT
109956 TGGCAT
1 TGGCAT
109962 TCTTCTCATC
Statistics
Matches: 518, Mismatches: 31, Indels: 31
0.89 0.05 0.05
Matches are distributed among these distances:
182 298 0.58
183 1 0.00
184 1 0.00
186 43 0.08
188 45 0.09
190 1 0.00
191 1 0.00
192 83 0.16
193 3 0.01
195 1 0.00
196 8 0.02
197 33 0.06
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (185 bp):
TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACC
AATGTCACTGGCCTTGAATCAGCACATTGGCACCACTTTAAGACCAATATCGCTGGCCTTGAATC
AGCATATTGACACCTTATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
Found at i:109617 original size:273 final size:276
Alignment explanation
Indices: 109203--109960 Score: 1110
Period size: 273 Copynumber: 2.7 Consensus size: 276
109193 CACAACTTCG
*
109203 TGGCATCTTTAAG-CCAAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAA
1 TGGCATCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGACGCCTT-G--ATCTTTAA
109267 GACCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCGCTGGC
62 GACCAATGTCACTGGCCTTGAATCAGCACATT-G-A-C-TCATCTTTAAGACCAATATCGCTGGC
*
109332 CTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTG
123 CTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
* * *
109397 GCACTTTTAAGTCCAATATCGCTGGCCTTGAATCATCATATTGGCACCTCATCTTTAAGACCAAT
188 GCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTCATCTTTAAGACCAAT
*
109462 GTCGCTGGCCTTGAATCAGCACAT
253 GTCACTGGCCTTGAATCAGCACAT
* * *
109486 TGGCACCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACACCTTG-TCTTTAAGACC
1 TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTGATCTTTAAGACC
* * * *
109550 AATGTCGCTGGCCTTGAATTAGCACATT-A-GCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
66 AATGTCACTGGCCTTGAATCAGCACATTGACTCATCTTTAAGACCAATATCGCTGGCCTTGAATC
*
109613 AGCATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTT
131 AGCATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTT
**
109678 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTGTCTTTAAGACCAATGTCACTGG
196 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTCATCTTTAAGACCAATGTCACTGG
109743 CCTTGAATCAGCACAT
261 CCTTGAATCAGCACAT
*
109759 TGGCATCTTTAAGTCCAATATCGCTGGCCTTAAATCAGCATATTGACGCCTTTGTCATCTTTAAG
1 TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCC-TTG--ATCTTTAAG
* *
109824 TCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAGTATCGCTGGCC
63 ACCAATGTCACTGGCCTTGAATCAGCACATT-G-A-C-TCATCTTTAAGACCAATATCGCTGGCC
* * *
109889 TTGAATCAGCATATTGGCGCCTTCATCATCTTTAAAACCCAATGTCGTTGGCCTTGAATCAGCAC
124 TTGAATCAGCATATTGGC-AC--C-TCATCTTTAAGA-CCAATGTCGCTGGCCTTGAATCAGCAC
109954 ATTGGCA
184 ATTGGCA
109961 TTCTTCTCAT
Statistics
Matches: 429, Mismatches: 30, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
273 216 0.50
274 3 0.01
276 1 0.00
277 36 0.08
279 37 0.09
280 1 0.00
282 1 0.00
283 87 0.20
284 3 0.01
286 1 0.00
287 11 0.03
288 32 0.07
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (276 bp):
TGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTGATCTTTAAGACC
AATGTCACTGGCCTTGAATCAGCACATTGACTCATCTTTAAGACCAATATCGCTGGCCTTGAATC
AGCATATTGGCACCTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTT
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTCATCTTTAAGACCAATGTCACTGG
CCTTGAATCAGCACAT
Found at i:109710 original size:22 final size:22
Alignment explanation
Indices: 109645--109710 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
109635 AAGACCAATG
109645 TCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCATA
*
109667 T---TGGCACCTTTAAGTC--CAATA
1 TCGCTGG--CCTTGAA-TCAGC-ATA
109688 TCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCATA
109710 T
1 T
109711 TGACACCTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
19 3 0.09
20 1 0.03
21 12 0.36
22 13 0.39
23 1 0.03
24 3 0.09
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (22 bp):
TCGCTGGCCTTGAATCAGCATA
Found at i:110053 original size:55 final size:52
Alignment explanation
Indices: 109813--110056 Score: 192
Period size: 49 Copynumber: 4.7 Consensus size: 52
109803 GACGCCTTTG
** ** * *
109813 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCA--CCT-
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGGCATTCTTC
* * * * * **
109862 TCATCTTTAAGA-CCAGTATCGCTGGCCTTGAATCAGCATATTGGC-GCCTTC
1 TCATCTTTAA-ACCCAATGTCGTTGGCCGTGAATCAGCACATTGGCATTCTTC
*
109913 ATCATCTTTAAAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTC
1 -TCATCTTT-AAACCCAATGTCGTTGGCCGTGAATCAGCACATTGGCATTCTTC
* ** * * * * *
109967 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCATTTTTC
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTG---GCATTCTTC
*
110022 TCATCTTTAAACCCAATATCGTTGGCCGTGAATCA
1 TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCA
110057 ACGTATTGGT
Statistics
Matches: 156, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 39 0.25
50 2 0.01
52 38 0.24
53 38 0.24
54 4 0.03
55 35 0.22
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (52 bp):
TCATCTTTAAACCCAATGTCGTTGGCCGTGAATCAGCACATTGGCATTCTTC
Found at i:110740 original size:13 final size:13
Alignment explanation
Indices: 110722--110746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110712 TTCAACAATT
110722 TGTATCGATACAA
1 TGTATCGATACAA
110735 TGTATCGATACA
1 TGTATCGATACA
110747 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:123172 original size:33 final size:33
Alignment explanation
Indices: 123130--123192 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
123120 TTCCTAGATG
123130 TATCGATACAAAG-ATCAATGTATCGATACAATA
1 TATCGATACAAAGAAT-AATGTATCGATACAATA
**
123163 TATCGATACATTGAATAATGTATCGATACA
1 TATCGATACAAAGAATAATGTATCGATACA
123193 TTTCCTTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 25 0.93
34 2 0.07
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (33 bp):
TATCGATACAAAGAATAATGTATCGATACAATA
Found at i:125380 original size:22 final size:22
Alignment explanation
Indices: 125355--125396 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
125345 AATTTTTTGA
125355 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGGAGAAATGC
*
125377 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAAGGGGGAGAAAT
125397 ATGTTTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATGC
Found at i:125998 original size:13 final size:13
Alignment explanation
Indices: 125980--126006 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
125970 ACATTATGCT
125980 TTGTATCGATACA
1 TTGTATCGATACA
125993 TTGTATCGATACA
1 TTGTATCGATACA
126006 T
1 T
126007 ATTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:126021 original size:32 final size:33
Alignment explanation
Indices: 125961--126025 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
125951 CACACCCAGA
*
125961 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
*
125994 TGTATCGATACA-TATTCATTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
126026 GAAACTGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTATGCATTGTATCGATACAT
Found at i:128557 original size:3 final size:3
Alignment explanation
Indices: 128549--128595 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
128539 CGAGTCAACT
* *
128549 TCA TCA TCA TTA TCA TCA TCA TCA TCA TCA TCA TCA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
128596 TTTGATGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:129631 original size:267 final size:267
Alignment explanation
Indices: 129149--129684 Score: 1036
Period size: 267 Copynumber: 2.0 Consensus size: 267
129139 CTCTTTGTTG
* *
129149 GAATTTGTGGTCTTTTAATGATGATCTTCCACACTTCGTAGTCATTAGCTTGGATAAACAATCTC
1 GAATTTATGGTCTTTTAACGATGATCTTCCACACTTCGTAGTCATTAGCTTGGATAAACAATCTC
129214 ATTCATGTTCTCCAATATGAGTAGTTGTCCCCATTAAAGTATAGAGGTCTCATAGTCGAGTGACC
66 ATTCATGTTCTCCAATATGAGTAGTTGTCCCCATTAAAGTATAGAGGTCTCATAGTCGAGTGACC
*
129279 TTCAAGTCCAATGGCATTTGAATTATTCTCCAATGCCATAAGAACGCATCCTTTCCTGGTTCAGC
131 TTCAAGTCCAATGGCATTTGAATTATTCTCCAATGCCATAAGAACGCATCCCTTCCTGGTTCAGC
129344 ATTTGTTGAGAAGCTTTGATGATCAAGTTTTCCTTTTAAGCTATAAAGATCATTTCTTCCGGGTG
196 ATTTGTTGAGAAGCTTTGATGATCAAGTTTTCCTTTTAAGCTATAAAGATCATTTCTTCCGGGTG
129409 TTAATCC
261 TTAATCC
*
129416 GAATTTATGGTCTTTTAACGATGATCTTCCACACTTCGTAGTCATTAGCTTGGATAAACATTCTC
1 GAATTTATGGTCTTTTAACGATGATCTTCCACACTTCGTAGTCATTAGCTTGGATAAACAATCTC
129481 ATTCATGTTCTCCAATATGAGTAGTTGTCCCCATTAAAGTATAGAGGTCTCATAGTCGAGTGACC
66 ATTCATGTTCTCCAATATGAGTAGTTGTCCCCATTAAAGTATAGAGGTCTCATAGTCGAGTGACC
129546 TTCAAGTCCAATGGCATTTGAATTATTCTCCAATGCCATAAGAACGCATCCCTTCCTGGTTCAGC
131 TTCAAGTCCAATGGCATTTGAATTATTCTCCAATGCCATAAGAACGCATCCCTTCCTGGTTCAGC
129611 ATTTGTTGAGAAGCTTTGATGATCAAGTTTTCCTTTTAAGCTATAAAGATCATTTCTTCCGGGTG
196 ATTTGTTGAGAAGCTTTGATGATCAAGTTTTCCTTTTAAGCTATAAAGATCATTTCTTCCGGGTG
129676 TTAATCC
261 TTAATCC
129683 GA
1 GA
129685 TGAAGGAGAT
Statistics
Matches: 265, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
267 265 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (267 bp):
GAATTTATGGTCTTTTAACGATGATCTTCCACACTTCGTAGTCATTAGCTTGGATAAACAATCTC
ATTCATGTTCTCCAATATGAGTAGTTGTCCCCATTAAAGTATAGAGGTCTCATAGTCGAGTGACC
TTCAAGTCCAATGGCATTTGAATTATTCTCCAATGCCATAAGAACGCATCCCTTCCTGGTTCAGC
ATTTGTTGAGAAGCTTTGATGATCAAGTTTTCCTTTTAAGCTATAAAGATCATTTCTTCCGGGTG
TTAATCC
Found at i:130557 original size:20 final size:20
Alignment explanation
Indices: 130514--130584 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
130504 GCCAGTTTCA
*
130514 TGTATCGATACAAT-TCGCTA
1 TGTATCGATACAATAT-GCTG
130534 TGTATCGATACAATATGCTG
1 TGTATCGATACAATATGCTG
* *
130554 TGTATCAATACCAAGAT-C-G
1 TGTATCGATA-CAATATGCTG
130573 TGTATCGATACA
1 TGTATCGATACA
130585 GTGTATCGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.04
19 10 0.22
20 27 0.60
21 6 0.13
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAATATGCTG
Found at i:130590 original size:13 final size:13
Alignment explanation
Indices: 130572--130597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
130562 TACCAAGATC
130572 GTGTATCGATACA
1 GTGTATCGATACA
130585 GTGTATCGATACA
1 GTGTATCGATACA
130598 AAGCAATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:130629 original size:20 final size:21
Alignment explanation
Indices: 130606--130644 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
130596 CAAAGCAATA
*
130606 TGTATCGATAC-TTCTAGGTC
1 TGTATCGAAACTTTCTAGGTC
*
130626 TGTATTGAAACTTTCTAGG
1 TGTATCGAAACTTTCTAGG
130645 GTTTTGACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (21 bp):
TGTATCGAAACTTTCTAGGTC
Found at i:130672 original size:19 final size:19
Alignment explanation
Indices: 130648--130686 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
130638 TTCTAGGGTT
130648 TTGACCTTTGTAGTTTAAG
1 TTGACCTTTGTAGTTTAAG
130667 TTGACCTTTGTAGTTTAAG
1 TTGACCTTTGTAGTTTAAG
130686 T
1 T
130687 CAACCTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.49
Consensus pattern (19 bp):
TTGACCTTTGTAGTTTAAG
Found at i:130692 original size:19 final size:19
Alignment explanation
Indices: 130651--130694 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
130641 TAGGGTTTTG
**
130651 ACCTTTGTAGTTTAAGTTG
1 ACCTTTGTAGTTTAAGTCA
130670 ACCTTTGTAGTTTAAGTCA
1 ACCTTTGTAGTTTAAGTCA
130689 ACCTTT
1 ACCTTT
130695 TATGTATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (19 bp):
ACCTTTGTAGTTTAAGTCA
Found at i:132045 original size:21 final size:21
Alignment explanation
Indices: 132003--132044 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
131993 ACATTTTTTA
132003 ATTTTTATCTTATAATATTAT
1 ATTTTTATCTTATAATATTAT
*
132024 ATTTTTATATT-T-ATATTAT
1 ATTTTTATCTTATAATATTAT
132043 AT
1 AT
132045 AAAATACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 1 0.05
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTATCTTATAATATTAT
Found at i:133291 original size:33 final size:32
Alignment explanation
Indices: 133252--133330 Score: 115
Period size: 33 Copynumber: 2.4 Consensus size: 32
133242 TTAAGAAATT
133252 TGATCAAAGTTAACCAAAAGTGTATAATATCTAA
1 TGATCAAAGTTAACCAAAAGTGTATAA-ATCT-A
* *
133286 T-ATCAAAGTAAACCAAAAGTGTATAAATCTG
1 TGATCAAAGTTAACCAAAAGTGTATAAATCTA
133317 TGATCAAAGTTAAC
1 TGATCAAAGTTAAC
133331 AGCTTCAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
31 1 0.02
32 15 0.37
33 24 0.59
34 1 0.02
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (32 bp):
TGATCAAAGTTAACCAAAAGTGTATAAATCTA
Done.