genome.fa.s1506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1506
Parameters: 2 7 7 80 10 50 1000
Length:  97813

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957--981	12	2.1	12	100	0	50	32	8	24	36	1.84
2429--2462	16	2.1	16	94	0	59	41	0	2	55	1.15
2538--2571	16	2.1	17	94	5	61	26	26	23	23	2.00
2706--2773	13	4.8	14	75	21	61	52	1	1	44	1.19
2712--2785	30	2.6	29	81	12	82	54	0	2	43	1.14
4953--5012	21	2.9	21	73	9	59	33	20	5	41	1.74
8689--8759	33	2.2	33	89	0	106	25	19	19	35	1.96
10869--10921	20	2.7	20	85	5	72	35	20	9	33	1.85
11686--11757	37	1.9	37	97	0	135	37	15	5	41	1.70
19799--19851	20	2.7	20	88	5	72	33	20	9	35	1.85
23104--23227	52	2.4	51	93	4	205	29	17	18	34	1.94
23104--23247	52	2.8	50	84	13	177	30	17	18	33	1.94
23236--23260	13	1.9	13	100	0	50	36	16	16	32	1.90
23325--23349	13	1.9	13	100	0	50	32	16	16	36	1.90
23303--23369	33	2.0	33	88	0	98	40	11	11	35	1.79
23887--23921	17	2.1	17	94	0	61	37	5	5	51	1.50
24174--24218	21	2.1	22	91	4	74	64	4	0	31	1.13
24178--24224	21	2.3	21	81	3	69	68	2	0	29	1.02
28106--28148	21	2.0	21	86	8	61	32	13	0	53	1.41
28971--29011	14	2.8	15	82	10	50	53	0	4	41	1.22
29202--29286	23	3.7	23	75	20	79	44	0	0	55	0.99
29226--29263	20	2.0	20	90	10	62	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31557--31634	33	2.4	33	84	2	95	21	21	19	37	1.95
32347--32459	49	2.3	51	80	10	128	55	3	0	40	1.17
32785--32828	23	2.0	23	86	4	63	50	2	2	45	1.27
32917--32976	26	2.3	26	82	0	84	56	0	0	43	0.99
33188--33225	18	2.1	19	90	5	60	50	2	0	47	1.15
33401--33446	22	2.1	22	83	0	56	65	4	0	30	1.12
33538--33562	8	3.1	8	100	0	50	76	0	0	24	0.80
36358--36398	3	13.7	3	89	0	64	63	2	2	31	1.20
36397--36425	3	9.7	3	100	0	58	34	0	0	65	0.93
36553--36596	22	2.0	22	82	4	54	47	4	0	47	1.22
38445--38474	2	15.0	2	100	0	60	50	0	0	50	1.00
40576--40700	62	2.0	62	96	0	232	32	15	13	38	1.86
43289--43330	10	4.2	10	76	11	50	35	0	0	64	0.94
47032--47538	79	6.4	79	89	1	757	34	14	25	26	1.94
47032--47540	236	2.2	237	91	1	824	34	14	25	26	1.94
48917--49157	35	6.9	35	95	0	428	19	32	5	41	1.75
49052--49082	14	2.2	14	100	0	62	22	38	6	32	1.80
51321--51374	10	4.6	12	75	25	53	46	1	0	51	1.11
51596--51660	13	4.6	14	75	21	64	55	0	1	43	1.09
51595--51670	29	2.5	30	81	8	84	56	0	2	40	1.13
51898--51948	16	3.1	16	72	13	50	52	0	0	47	1.00
51904--51970	27	2.3	30	75	19	79	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51905--51977	26	2.7	27	80	14	80	53	0	0	46	1.00
51898--52001	35	3.0	32	75	16	93	53	0	0	46	1.00
52824--52951	39	3.4	39	68	12	113	42	22	7	27	1.81
52764--52990	75	3.0	75	91	0	355	39	20	8	31	1.82
52790--52984	36	5.2	36	66	14	117	39	21	7	31	1.82
55639--55678	15	2.7	14	88	7	53	42	25	2	30	1.68
56620--56664	21	2.1	22	91	4	74	64	4	0	31	1.13
56716--56779	14	4.4	14	70	20	51	59	1	3	35	1.23
59722--59763	18	2.4	18	88	11	61	47	2	0	50	1.14
60526--60568	21	2.0	21	86	8	61	32	13	0	53	1.41
61028--61068	20	2.1	20	86	4	57	41	0	4	53	1.22
61412--61452	14	2.8	15	82	10	50	53	0	4	41	1.22
61427--61520	33	2.8	33	78	15	104	53	1	1	44	1.14
61637--61692	24	2.3	24	84	9	69	46	0	0	53	1.00
61644--61697	23	2.3	25	84	9	78	48	0	0	51	1.00
61682--61732	21	2.6	20	82	11	70	43	0	0	56	0.99
65698--65733	18	1.9	19	88	5	56	47	2	2	47	1.31
66562--66677	55	2.1	56	93	3	198	44	6	6	42	1.55
66825--66861	2	18.5	2	94	0	65	45	0	2	51	1.15
67645--67678	2	17.0	2	93	0	59	52	0	0	47	1.00
70079--70621	282	1.9	281	94	1	962	35	14	17	32	1.90
72047--72103	20	2.7	21	89	5	80	45	14	14	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73191--73233	21	2.1	20	82	4	50	48	0	2	48	1.14
74042--74082	20	2.0	22	90	9	68	39	2	0	58	1.11
74070--74112	17	2.5	17	85	11	52	46	0	0	53	1.00
74384--74422	9	4.0	9	87	12	51	28	0	0	71	0.86
74382--74433	25	2.1	25	85	7	70	30	0	1	67	1.02
74633--74693	30	2.1	29	84	3	77	59	0	0	40	0.98
74738--74790	22	2.4	21	80	17	63	50	0	1	47	1.12
74744--74790	24	2.0	23	88	12	69	51	0	2	46	1.13
74746--74801	24	2.3	23	79	11	60	53	0	3	42	1.18
75883--75912	15	2.0	15	100	0	60	46	13	0	40	1.43
75881--75914	17	2.0	17	94	0	59	47	14	0	38	1.45
80141--80200	17	3.6	17	71	24	65	56	0	1	41	1.09
80171--80266	30	3.5	26	71	20	72	58	2	1	38	1.17
80159--80265	9	12.0	9	71	12	62	57	1	0	39	1.16
80215--80265	17	2.9	17	82	5	57	62	3	0	33	1.13
80165--80256	47	1.9	48	80	10	109	57	2	1	39	1.18
80391--80457	24	2.8	24	82	8	66	34	1	1	62	1.13
80424--80467	20	2.2	20	83	0	52	34	0	0	65	0.93
85444--85511	33	2.1	34	86	5	95	48	22	5	23	1.72
85469--85558	41	2.3	39	82	3	99	56	13	7	22	1.62
86001--86078	13	6.3	11	72	22	57	66	0	1	32	1.00
86003--86078	22	3.5	22	77	12	70	67	0	1	31	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86031--86072	12	3.7	12	87	12	54	64	0	0	35	0.94
86007--86081	29	3.0	24	77	20	82	65	0	1	33	1.01
86672--86699	14	2.0	14	100	0	56	35	0	0	64	0.94
87486--87539	20	2.7	19	75	11	54	37	5	0	57	1.22
88011--88053	21	2.1	21	86	4	61	41	0	0	58	0.98
90195--90247	19	2.8	17	78	16	52	45	0	0	54	0.99
90508--90537	15	2.1	14	93	6	51	76	0	0	23	0.78
92402--92443	16	2.5	16	84	7	57	50	2	0	47	1.14
92419--92490	21	3.2	22	80	9	83	50	2	1	45	1.25

Tables:   1

The End!