Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1509
Parameters: 2 7 7 80 10 50 1000
Length:  73235

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
528--573
4
11.8
4
90
4
58
67
0
0
32
0.91
2138--2178
19
2.0
21
90
9
68
31
0
7
60
1.24
2342--2376
2
17.5
2
100
0
70
51
0
48
0
1.00
3050--3095
7
6.6
7
76
18
51
65
0
0
34
0.93
3034--3090
16
3.6
16
84
15
66
64
0
0
35
0.93
3051--3101
22
2.4
22
83
9
61
62
0
1
35
1.06
3451--3487
10
3.7
10
85
0
56
59
0
0
40
0.97
3449--3487
20
1.9
21
89
5
62
58
0
0
41
0.98
3429--3494
30
2.3
30
80
17
77
54
0
0
45
0.99
4152--4218
34
1.9
35
82
8
84
53
4
1
40
1.30
4255--4287
15
2.1
16
88
11
50
60
0
0
39
0.97
4497--4540
14
3.1
14
80
6
61
43
2
2
52
1.26
4910--4948
4
9.8
4
88
0
60
0
17
0
82
0.68
9436--9481
13
3.5
13
78
0
56
47
4
0
47
1.21
9488--9551
33
1.9
33
87
0
92
45
3
1
50
1.27
9749--9780
3
11.0
3
93
6
57
31
0
0
68
0.90
9896--9933
2
19.0
2
94
0
67
50
2
0
47
1.15
10244--10294
17
2.7
19
80
20
63
54
0
3
41
1.19
12107--12145
19
2.1
19
90
9
62
46
0
0
53
1.00
12107--12146
20
2.1
19
90
4
62
47
0
0
52
1.00
14412--14455
23
1.9
23
81
9
54
29
0
9
61
1.27
14720--14779
9
6.8
9
72
11
52
76
0
21
1
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14721--14776
19
3.0
19
82
14
64
76
0
21
1
0.87
17883--17915
11
2.8
12
90
9
50
78
0
6
15
0.93
19261--19300
12
3.4
12
83
16
57
67
2
0
30
1.04
19365--19404
18
2.2
18
86
8
55
40
5
2
52
1.37
19461--19524
25
2.6
25
87
5
85
39
12
0
48
1.41
19972--19998
14
1.9
14
100
0
54
51
0
7
40
1.30
20717--20761
22
2.0
22
87
8
65
26
8
8
55
1.60
26894--26928
18
1.9
18
88
11
54
48
5
2
42
1.41
29422--29468
2
23.0
2
83
12
60
44
2
2
51
1.25
32281--32327
23
1.9
23
83
12
58
53
0
0
46
1.00
32766--32800
2
17.5
2
100
0
70
48
0
0
51
1.00
33373--33429
22
2.5
23
83
8
73
49
1
0
49
1.11
33369--33574
114
1.8
113
90
3
333
47
4
0
47
1.27
33762--33786
2
12.5
2
100
0
50
52
0
0
48
1.00
35316--35365
23
2.1
23
85
3
64
74
2
12
12
1.17
35489--35542
26
2.1
27
82
6
67
50
0
1
48
1.11
35973--36022
3
16.7
3
95
0
91
64
0
2
34
1.05
36231--36280
19
2.4
22
77
19
61
58
0
0
42
0.98
36206--36285
29
2.8
30
77
7
78
61
0
0
38
0.96
36963--37004
2
21.0
2
100
0
84
50
0
0
50
1.00
37109--37186
32
2.4
32
82
2
84
10
12
30
46
1.75
37172--37246
16
4.7
16
77
6
80
20
17
25
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37183--37244
32
1.9
32
90
6
99
17
16
25
40
1.90
37217--37340
53
2.3
53
78
6
126
25
16
21
36
1.94
38314--38357
16
2.8
16
82
0
61
13
9
29
47
1.74
38293--38362
32
2.2
32
81
0
86
15
12
30
41
1.85
38861--38926
30
2.2
30
83
2
89
60
1
3
34
1.21
39695--39736
22
1.9
22
85
0
57
45
0
0
54
0.99
40208--40249
22
1.9
22
90
9
68
61
0
0
38
0.96
42297--42341
21
2.1
22
84
12
58
51
0
2
46
1.13
43519--43563
22
2.0
22
83
8
56
40
2
2
55
1.24
46281--46355
20
3.8
20
78
0
87
34
13
12
40
1.81
46281--46358
40
2.0
39
87
2
111
34
12
12
39
1.82
50306--50526
34
6.5
33
81
9
257
40
26
7
25
1.82
50308--50526
68
3.2
67
85
3
287
40
26
7
25
1.82
50306--50526
102
2.2
101
90
1
361
40
26
7
25
1.82
54935--55153
34
6.5
33
81
9
253
40
26
7
25
1.82
54937--55153
68
3.2
67
84
3
283
40
26
7
25
1.82
54935--55153
102
2.2
101
89
1
357
40
26
7
25
1.82
55246--55300
29
1.9
28
85
3
74
49
0
5
45
1.25
57483--57520
18
2.1
18
85
9
51
50
2
0
47
1.15
58044--58080
18
2.1
18
94
0
65
70
0
0
29
0.88
60667--60857
100
1.9
102
87
2
287
26
4
17
51
1.64
60667--60860
51
3.8
51
86
2
275
26
4
17
51
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68265--68306
22
1.9
22
85
9
59
40
0
0
59
0.97
68594--68638
18
2.4
19
88
3
65
64
4
0
31
1.13
69123--69176
20
2.7
20
80
5
56
61
3
0
35
1.14
69130--69183
14
3.7
14
78
14
56
62
3
0
33
1.12
71621--71689
36
1.9
36
82
5
86
55
2
1
40
1.24

Tables:   1

The End!