genome.fa.s1511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1511
Parameters: 2 7 7 80 10 50 1000
Length:  47894

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029--1080	20	2.6	20	100	0	104	30	23	11	34	1.90
1068--1096	13	2.2	13	100	0	58	27	13	17	41	1.87
3524--3579	19	2.9	19	86	5	76	32	12	17	37	1.88
3524--3578	20	2.8	20	88	2	76	30	12	18	38	1.88
3608--3660	20	2.7	20	100	0	106	33	15	18	32	1.92
3643--3673	13	2.4	13	94	0	53	35	16	12	35	1.87
3623--3693	33	2.2	32	87	10	99	38	14	16	30	1.89
8723--8759	19	1.9	19	94	0	65	40	16	13	29	1.86
8747--8785	13	3.0	13	100	0	78	38	15	15	30	1.88
11000--11044	21	2.1	21	84	8	56	53	4	20	22	1.63
14892--14971	20	3.8	20	75	15	79	27	15	13	43	1.84
14957--14995	13	3.0	13	96	0	69	30	17	15	35	1.91
17531--17556	13	2.0	13	100	0	52	38	15	15	30	1.88
17513--17576	32	2.0	33	87	9	96	37	15	15	31	1.89
20778--20824	21	2.2	21	100	0	94	40	8	29	21	1.83
21567--21719	49	3.1	49	88	5	252	33	16	26	24	1.96
21558--21716	52	3.1	52	89	5	270	33	15	26	23	1.95
21802--22659	49	17.6	49	84	6	1113	32	17	25	24	1.97
21735--22659	98	9.4	98	94	3	1355	32	17	25	24	1.97
22726--23132	34	11.9	34	83	8	465	34	12	32	20	1.90
22713--23134	104	4.1	101	86	8	550	33	12	33	20	1.90
31378--31498	52	2.3	52	97	0	224	28	18	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31378--31518	52	2.7	51	90	4	212	30	17	18	33	1.94
31507--31531	13	1.9	13	100	0	50	36	16	16	32	1.90
31597--31621	13	1.9	13	100	0	50	32	16	16	36	1.90
31575--31641	33	2.0	33	88	0	98	40	13	11	34	1.81
36571--37079	152	3.3	151	84	3	495	49	10	9	31	1.68
38085--38110	13	2.0	13	100	0	52	30	15	15	38	1.88
38149--38222	20	3.7	20	72	15	71	31	17	12	39	1.86
38149--38241	41	2.3	40	96	1	168	31	18	12	37	1.88
38169--38241	20	3.6	20	81	3	101	31	19	13	35	1.91
38849--38955	53	2.0	53	98	0	205	33	25	5	35	1.79
40739--40777	13	3.0	13	96	0	69	35	15	17	30	1.91
40763--40841	20	3.7	20	75	18	70	45	15	13	25	1.83
42857--42887	15	2.1	15	93	0	53	12	22	16	48	1.80
46949--46974	13	2.0	13	100	0	52	30	15	15	38	1.88
47014--47105	40	2.3	40	94	0	157	30	19	13	36	1.90
47014--47087	20	3.7	20	77	13	80	29	18	12	39	1.87
47034--47105	20	3.6	20	79	7	92	30	20	13	34	1.92

Tables:   1

The End!