Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1514

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6755
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28


Found at i:1990 original size:2 final size:2

Alignment explanation


    Indices: 1983--2013  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1973 TAAAGCTTTT

                                                           
       1983 AG AG AG AG AG A- AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

       2014 GGAATATCCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   27  0.96

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Done.