genome.fa.s1515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1515
Parameters: 2 7 7 80 10 50 1000
Length:  37748

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2420--2491	13	6.0	13	76	18	84	27	15	12	44	1.82
2367--2480	33	3.4	33	77	10	133	25	14	14	45	1.83
7734--7862	52	2.5	52	93	0	213	31	17	15	35	1.91
7734--7882	52	2.9	51	87	4	201	32	16	16	34	1.91
7871--7895	13	1.9	13	100	0	50	36	16	16	32	1.90
7960--7984	13	1.9	13	100	0	50	32	16	16	36	1.90
7938--8004	33	2.0	33	85	0	89	40	13	13	32	1.83
8734--9128	171	2.3	171	93	1	682	37	14	24	24	1.92
9042--9921	49	17.7	49	88	5	1241	32	17	26	24	1.97
8975--9921	101	9.4	101	94	2	1567	32	16	26	24	1.96
9924--10014	28	3.1	28	86	10	137	10	19	39	29	1.86
9926--10018	32	3.1	31	89	7	147	12	19	38	29	1.89
10015--10940	35	25.9	35	70	17	502	33	12	33	20	1.90
10217--10481	33	7.8	33	78	14	290	31	12	34	21	1.91
10219--10940	68	10.3	68	76	11	608	32	12	34	20	1.91
9970--10788	291	2.8	291	96	1	1491	32	13	34	20	1.91
10355--10652	155	1.9	151	82	9	370	32	13	33	20	1.91
10508--10940	103	4.2	101	84	9	533	31	12	34	20	1.90
10920--11158	31	7.7	31	84	10	292	25	18	31	25	1.98
10920--11158	94	2.6	94	95	2	428	25	18	31	25	1.98
10920--11158	63	3.8	62	84	9	310	25	18	31	25	1.98
11170--11194	9	2.8	9	100	0	50	8	0	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12138--12176	1	39.0	1	89	0	60	0	2	2	94	0.34
12137--12177	20	2.0	20	95	0	73	0	2	7	90	0.54
22074--22099	13	2.0	13	100	0	52	30	15	15	38	1.88
22138--22213	21	3.7	21	80	3	100	28	17	11	42	1.84
22159--22231	20	3.6	20	81	3	101	31	19	13	35	1.91
22138--22231	41	2.3	41	98	0	179	29	18	12	39	1.88
22837--22899	16	3.8	16	91	8	99	33	38	1	26	1.66
22837--22899	17	3.7	17	93	6	101	33	38	1	26	1.66
22924--22969	16	2.8	16	93	6	74	30	39	2	28	1.69
24775--24814	13	3.1	13	96	0	71	35	15	17	32	1.91
30689--30761	20	3.5	20	88	3	101	32	19	9	38	1.84
31448--31520	20	3.6	20	81	3	101	35	13	19	31	1.91
31466--31541	21	3.7	21	80	3	100	42	11	17	28	1.84
31448--31541	41	2.3	41	98	0	179	39	12	18	29	1.88
31580--31605	13	2.0	13	100	0	52	38	15	15	30	1.88
37514--37538	9	2.8	9	100	0	50	8	0	24	68	1.16

Tables:   1

The End!