Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1518
Parameters: 2 7 7 80 10 50 1000
Length:  37110

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1709--1759
2
25.5
2
100
0
102
49
0
0
50
1.00
2343--2448
38
2.7
39
94
1
187
43
35
1
18
1.62
2675--2733
21
2.8
21
72
7
57
37
1
0
61
1.07
2683--2762
31
2.5
31
81
6
79
38
1
1
58
1.14
4013--4118
54
2.0
53
88
7
160
22
21
15
40
1.90
5368--5415
14
3.4
14
80
8
53
0
10
8
81
0.88
5695--5751
29
1.9
30
85
3
80
64
1
0
33
1.04
5690--5758
29
2.4
28
73
9
66
59
1
0
39
1.06
7798--7831
2
17.0
2
93
0
59
52
0
47
0
1.00
8098--8137
21
2.0
20
85
9
55
45
0
5
50
1.23
8165--8230
29
2.3
30
78
5
73
42
0
3
54
1.15
9123--9208
20
4.1
21
71
18
54
58
0
1
40
1.06
9130--9182
23
2.4
22
84
6
63
52
0
1
45
1.11
9130--9225
41
2.4
39
79
8
102
54
1
1
43
1.14
9428--9466
2
19.5
2
100
0
78
51
0
0
48
1.00
9466--9492
2
13.5
2
100
0
54
51
0
48
0
1.00
9948--9985
16
2.4
16
86
4
51
55
2
0
42
1.14
10040--10071
16
2.1
15
94
5
55
21
6
0
71
1.07
10043--10083
7
5.2
8
85
8
50
19
2
2
75
1.03
11489--11527
18
2.2
18
95
0
69
51
10
17
20
1.74
14393--14453
27
2.3
26
81
16
63
34
26
9
29
1.88
16714--16756
22
2.0
20
86
8
59
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18705--18740
18
1.9
19
88
5
56
30
8
2
58
1.42
23331--23383
16
3.3
16
74
10
54
7
15
30
47
1.73
23332--23405
32
2.3
32
85
0
94
8
13
29
48
1.71
23339--23398
16
3.7
16
71
10
50
6
13
28
51
1.66
23332--23418
32
2.7
32
83
0
84
10
12
29
47
1.75
24798--24895
16
6.1
16
81
7
92
3
19
36
40
1.67
24805--24908
16
6.5
16
77
4
84
4
19
34
41
1.72
25811--25850
18
2.2
18
86
8
55
12
2
2
82
0.87
27393--27419
13
2.1
13
100
0
54
37
14
14
33
1.88
27464--27514
20
2.6
20
90
3
77
41
13
15
29
1.86
30168--30192
13
1.9
13
100
0
50
48
16
8
28
1.74
30153--30244
33
2.8
33
88
0
130
45
16
15
22
1.84
30433--30478
19
2.4
19
96
0
83
65
17
0
17
1.28
34505--34562
19
3.0
19
84
2
80
34
13
15
36
1.87
34591--34644
20
2.7
20
85
5
74
31
11
18
38
1.86

Tables:   1

The End!