genome.fa.s1519.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1519
Parameters: 2 7 7 80 10 50 1000
Length:  26728

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6172--6400	79	2.9	79	73	7	205	31	14	27	26	1.95
6253--6530	130	2.1	130	82	3	337	33	13	25	27	1.94
12848--12903	27	2.1	27	100	0	112	17	25	19	37	1.94
14542--14580	15	2.4	17	87	12	55	82	15	2	0	0.79
15872--16179	31	9.9	31	81	7	340	24	28	15	31	1.96
15882--16232	92	3.8	91	85	7	383	23	29	15	31	1.96
16112--16598	34	14.9	34	79	10	462	19	32	12	35	1.89
16155--16615	128	3.5	127	78	12	440	19	33	12	35	1.89
16112--16587	162	2.9	162	92	4	753	19	31	12	36	1.89
16603--16669	33	2.0	33	97	0	125	28	34	17	19	1.95
16664--17362	43	15.1	43	78	12	642	24	25	18	31	1.97
16664--17414	92	8.0	92	84	7	812	24	25	18	31	1.97
16991--17362	91	4.0	91	82	7	457	24	25	18	31	1.98
17130--17410	143	2.0	143	92	0	472	24	24	18	32	1.97
18228--18292	19	3.8	18	71	24	68	33	12	15	38	1.85
18232--18299	32	2.1	32	94	0	118	35	13	14	36	1.85
18345--18369	13	1.9	13	100	0	50	32	16	16	36	1.90
18324--18390	34	2.0	33	88	2	98	31	17	14	35	1.91
18360--18506	52	2.8	52	89	2	224	36	18	16	29	1.93
23592--23619	13	2.2	13	100	0	56	39	17	14	28	1.89
23664--23747	13	5.5	13	71	28	60	35	17	13	33	1.89
23672--23734	19	3.7	18	76	24	73	36	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23664--23749	32	2.7	32	96	0	163	37	17	12	32	1.88
24952--24976	13	1.9	13	100	0	50	32	16	16	36	1.90
25004--25049	24	1.9	24	86	0	65	23	23	8	43	1.82

Tables:   1

The End!