Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2945013
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 12 of 18
Found at i:1924997 original size:18 final size:19
Alignment explanation
Indices: 1924961--1924997 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
1924951 TTTTGGCAAA
1924961 ATGTATCGATACGCAAGTTT
1 ATGTATCGATAC-CAAGTTT
1924981 ATGTATCGATA-CAAGTT
1 ATGTATCGATACCAAGTT
1924998 CAGGAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (19 bp):
ATGTATCGATACCAAGTTT
Found at i:1927912 original size:85 final size:85
Alignment explanation
Indices: 1927795--1927996 Score: 302
Period size: 85 Copynumber: 2.4 Consensus size: 85
1927785 AAAAAAAACC
*
1927795 CTTAAATTTTCTTCAT-ATTTAATCTTTAGGGATACTCTAACCCATTTTTTCG-AGGAGATACGC
1 CTTAAATTTTCTTCATAATTTAATCTTTGGGGATACTCTAACCCATTTTTTCGAAGG-GATACGC
*
1927858 CAACCCCATTCTTTATAAAAA
65 CAACCCCATTCTTAATAAAAA
*
1927879 CTTAAATTTTCATT-ATAATTTAATCTTTGGGGATACTCTAACCCATTTTTTCGAAGGGATACTC
1 CTTAAATTTTC-TTCATAATTTAATCTTTGGGGATACTCTAACCCATTTTTTCGAAGGGATACGC
* *
1927943 CAATCTCATTCTTAATAAAAA
65 CAACCCCATTCTTAATAAAAA
* *
1927964 CTCAAATTTTCTTCATAATTTTATCTTTGGGGA
1 CTTAAATTTTCTTCATAATTTAATCTTTGGGGA
1927997 CTCCAACCCT
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
84 15 0.14
85 89 0.83
86 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.41
Consensus pattern (85 bp):
CTTAAATTTTCTTCATAATTTAATCTTTGGGGATACTCTAACCCATTTTTTCGAAGGGATACGCC
AACCCCATTCTTAATAAAAA
Found at i:1929828 original size:73 final size:72
Alignment explanation
Indices: 1929517--1930164 Score: 393
Period size: 72 Copynumber: 8.9 Consensus size: 72
1929507 TTAACTCATG
** * * *
1929517 TAATCATA-TCAAAAAATCAAATTTAAACTACTACAAATAAAGATAATTAATATCTTAAAAATTT
1 TAATCATACTC-AAAAA-CAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAATTT
1929581 AAACTTGTA
64 AAACTTGTA
* * * *
1929590 TAAAT-ATACCCAAAAATAAATTTAAACTTTTACAAATAAAAATAAATTATA-CCTTCAAAATTT
1 T-AATCATACTCAAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCC-T-AAAAATT
1929653 TAAACTTAG-A
63 TAAACTT-GTA
* * * * * * *
1929663 TAATCTTAAACCCCAAAAAATAAATTTTAATTTTTATAAATAAAAATAAATTATATCCTAAAAAT
1 TAATC--ATA-CTC-AAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAAT
* **
1929728 TTAAGCTCATA
62 TTAAACTTGTA
* * *
1929739 TAATCATACTTAAAAAACAAATATAAACTTTTACAAATAAAGATAAATAATATGCCCTAAAAATT
1 TAATCATAC-TCAAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATAT--CCTAAAAATT
*
1929804 TAAACTTGTG
63 TAAACTTGTA
* * * * *
1929814 TAATCA-ACTCAAAAAATAAATTTAAA-TTTCATC-AATAAAAACAAATTATA-CTTTCAAAAAT
1 TAATCATACTC-AAAAACAAATTTAAACTTTTA-CAAATAAAAATAAATAATATC-CT-AAAAAT
1929875 TTAAACTTGTA
62 TTAAACTTGTA
* * ** * ** *
1929886 TAATCTTAAACCCCCCAAA-AAATTT-AACTTATATGAATAAAAATAAATTATA-CCTAAAAATT
1 TAATC--ATA-CTCAAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAATT
*
1929948 TAAACTCGTA
63 TAAACTTGTA
* * * *
1929958 TAATTATA-TCAAAGAAATAAATTTAAACTTTTA-TAA-AAAAATAAATAATATCTTAAAAATTT
1 TAATCATACTC-AA-AAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAATTT
* *
1930020 AAA-TCCGCA
64 AAACT-TGTA
* * * * * *
1930029 TAATCA-ATTTAAAAAACAAATTT-AA-TTTCTATAAATAAAAATTAATTACA-CCTTTAAAAAT
1 TAATCATA-CTCAAAAACAAATTTAAACTTT-TACAAATAAAAATAAATAATATCC--TAAAAAT
*
1930090 TTAAACTTATA
62 TTAAACTTGTA
* * * * * *
1930101 TAATCATAC-CTAAAAATATATTTAAACTTTGA-AAATCAAAATAAATTATACCCTAAAAATTTA
1 TAATCATACTC-AAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAATTTA
1930164 A
65 A
1930165 CTCGCATTAT
Statistics
Matches: 453, Mismatches: 78, Indels: 90
0.73 0.13 0.14
Matches are distributed among these distances:
68 4 0.01
69 4 0.01
70 33 0.07
71 55 0.12
72 126 0.28
73 88 0.19
74 53 0.12
75 28 0.06
76 22 0.05
77 38 0.08
78 2 0.00
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (72 bp):
TAATCATACTCAAAAACAAATTTAAACTTTTACAAATAAAAATAAATAATATCCTAAAAATTTAA
ACTTGTA
Found at i:1930087 original size:143 final size:140
Alignment explanation
Indices: 1929905--1930164 Score: 333
Period size: 143 Copynumber: 1.8 Consensus size: 140
1929895 ACCCCCCAAA
* * * * *
1929905 AAATTTAACTTATATGAATAAAAATAAATTATACCTAAAAATTTAAACTCGTATAATTATATCAA
1 AAATTTAACTTATATAAATAAAAATAAATTACACCTAAAAATTTAAACTCATATAATCATACCAA
* * *
1929970 AGAAATAAATTTAAACTTTTATAAA-AAAATAAATAATATCTTAAAAATTTAAATCCGCATAATC
66 A-AAATAAATTTAAACTTTGA-AAACAAAATAAATAATACCCTAAAAATTTAAATCCGCATAATC
1930034 AATTTAAAAAAC
129 AATTTAAAAAAC
* * * *
1930046 AAATTTAATTTCTATAAATAAAAATTAATTACACCTTTAAAAATTTAAACTTATATAATCATACC
1 AAATTTAACTTATATAAATAAAAATAAATTACACC--TAAAAATTTAAACTCATATAATCATACC
* * *
1930111 TAAAAATATATTTAAACTTTGAAAATCAAAATAAATTATACCCTAAAAATTTAA
64 AAAAAATAAATTTAAACTTTGAAAA-CAAAATAAATAATACCCTAAAAATTTAA
1930165 CTCGCATTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
141 33 0.33
142 17 0.17
143 50 0.50
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.35
Consensus pattern (140 bp):
AAATTTAACTTATATAAATAAAAATAAATTACACCTAAAAATTTAAACTCATATAATCATACCAA
AAAATAAATTTAAACTTTGAAAACAAAATAAATAATACCCTAAAAATTTAAATCCGCATAATCAA
TTTAAAAAAC
Found at i:1930672 original size:29 final size:29
Alignment explanation
Indices: 1930614--1930672 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
1930604 ATGGTATTTT
** **
1930614 AAAAATTTAAACTCGTATAATCAATCTAA
1 AAAAATTTAAACTCGTATAAAAAAAATAA
1930643 AAAAATTTAAACTTC-TATAAAAAAAATAA
1 AAAAATTTAAAC-TCGTATAAAAAAAATAA
1930672 A
1 A
1930673 TTATATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (29 bp):
AAAAATTTAAACTCGTATAAAAAAAATAA
Found at i:1930722 original size:41 final size:40
Alignment explanation
Indices: 1930643--1930726 Score: 98
Period size: 41 Copynumber: 2.1 Consensus size: 40
1930633 ATCAATCTAA
* *
1930643 AAAAATTTAAACTTCTATAAAAAAAATAAATTATATATTT
1 AAAAATTTAAACTTCTATAAAAAAAATAAAATACATATTT
* **
1930683 AAAAATTTAAAC-TCATATAATCAAACCTAAAATACATATTT
1 AAAAATTTAAACTTC-TATAA-AAAAAATAAAATACATATTT
1930724 AAA
1 AAA
1930727 CTTCTACAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.05
40 17 0.46
41 18 0.49
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (40 bp):
AAAAATTTAAACTTCTATAAAAAAAATAAAATACATATTT
Found at i:1930903 original size:72 final size:71
Alignment explanation
Indices: 1930181--1931256 Score: 817
Period size: 72 Copynumber: 15.0 Consensus size: 71
1930171 TTATATTATA
* * * *
1930181 AAAAATTTAAACAT-GTGTAATCATACCCAAAAAACATATTTAAACTTCTATAAATAAAAATGAA
1 AAAAATTTAAAC-TCGTATAATCATA-CTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAA
*
1930245 TTATACTAAC-
63 TTATAC--CCT
* * * * *
1930255 AAAAATTTAAACTCGTATAATCATACTTAAAAGACATATTTAAATTTTTATAAACAAAAATAAAT
1 AAAAATTTAAACTCGTATAATCATAC-TAAAAAACAAATTTAAACTTCTATAAA-TAAAATAAAT
***
1930320 TATAAGTT
64 TATACCCT
* * * * *
1930328 AAAAATTTAAACTCATATAATCGTAGC-AAAAAATAAATTTAAACTTCTACAAATAAAGAT-ACT
1 AAAAATTTAAACTCGTATAATCATA-CTAAAAAACAAATTTAAACTTCTATAAATAAA-ATAAAT
*
1930391 TAATAACCT
64 T-ATACCCT
* * *
1930400 -AAAATTTAAACTCGTATAATCAAACT--AAAA-AAATTTAAACTT-TACAAATAAAAATATATT
1 AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAATT
*
1930460 ATACCTT
65 ATACCCT
* * * * * *
1930467 CACAAATTTAAACTTGCATAATTATAC-ACAAAAA-AAATTGAAACTTCTATGAATAAAA-AATA
1 -AAAAATTTAAACTCGTATAATCATACTA-AAAAACAAATTTAAACTTCTATAAATAAAATAA-A
* *
1930529 TCCTAAACTCT
63 T--TATACCCT
* * * * * *
1930540 AAAAATTTAAATTCTTATAATCATTCCCCAAAAAATAAATCTAAACTTCTA-AGAATAAAGATAA
1 AAAAATTTAAACTCGTATAATCA-T-ACTAAAAAACAAATTTAAACTTCTATA-AATAAA-ATAA
** ***
1930604 ATGGTATTTT
62 ATTATACCCT
*
1930614 AAAAATTTAAACTCGTATAATCA-ATCT--AAAA-AAATTTAAACTTCTATAAAAAAAATAAATT
1 AAAAATTTAAACTCGTATAATCATA-CTAAAAAACAAATTTAAACTTCTATAAATAAAATAAATT
***
1930675 ATATATTT
65 ATA-CCCT
* * * * *
1930683 AAAAATTTAAACTCATATAATCAAACCTAAAATACATATTTAAACTTCTACAAATTAAAATAAAT
1 AAAAATTTAAACTCGTATAATCATA-CTAAAAAACAAATTTAAACTTCTATAAA-TAAAATAAAT
1930748 TATACCCT
64 TATACCCT
* * * * * *
1930756 AAAAATTTAAATTTGTATAATTA-AAT-AAAAATAAATTTAAACTTTTATAAATAAAAATAAATT
1 AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAATT
*
1930819 ATACCAT
65 ATACCCT
* * * *
1930826 CAAAAATTAAAATTCATATAATCATACTAAAAAACACATTTAAACTTCTATAAATAAAACTAAAT
1 -AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAATAAAA-TAAAT
1930891 TATACCCT
64 TATACCCT
* * * * * * *
1930899 AAAAATTTAAATTTGTATAATTATATTGAAAAACAAATTTAAACTTCTATAAATAAAGATTAATA
1 AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAATAAA-ATAAATT
1930964 ATACCCT
65 ATACCCT
* * * * * ** * *
1930971 AAAAATTTAAATTCATATCATCAAACCAAAAATTAAATTTAAACTTCTACAAATAAAAATAATTT
1 AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAATT
*
1931036 ATACCTT
65 ATACCCT
* * * *
1931043 CAAAAATTTAAACTCGAATAATCATACTAAAAAATATATTTAAACTTCTACAAATCAAAATAAAT
1 -AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAAT
*
1931108 TATACTCT
64 TATACCCT
* * * * * * *
1931116 AAAAATTTAAACTTGCATAATCA-AATGAAAAACAAATCTAAATTTCTACAAATAAAAATAAATT
1 AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAAT-AAAATAAATT
*
1931180 ATACCTT
65 ATACCCT
* * * * *
1931187 CAAAATTTAAACTCGTATAATTATACCCT-ATAAATAAGTTTAAACTTCTATAAATAAAATAAAT
1 AAAAATTTAAACTCGTATAATCATA--CTAAAAAACAAATTTAAACTTCTATAAATAAAATAAAT
*
1931251 AATACC
64 TATACC
1931257 TTTAATCAAA
Statistics
Matches: 804, Mismatches: 153, Indels: 92
0.77 0.15 0.09
Matches are distributed among these distances:
67 14 0.02
68 25 0.03
69 69 0.09
70 46 0.06
71 126 0.16
72 210 0.26
73 187 0.23
74 102 0.13
75 20 0.02
76 3 0.00
77 2 0.00
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (71 bp):
AAAAATTTAAACTCGTATAATCATACTAAAAAACAAATTTAAACTTCTATAAATAAAATAAATTA
TACCCT
Found at i:1931026 original size:144 final size:142
Alignment explanation
Indices: 1930218--1931256 Score: 899
Period size: 144 Copynumber: 7.2 Consensus size: 142
1930208 CAAAAAACAT
* * * * * *
1930218 ATTTAAACTTCTATAAATAAAAATGAATTATACTAAC-AAAAATTTAAACTCGTATAATCATACT
1 ATTTAAACTTCTATAAATAAAAATAAATAATAC--CCTAAAAATTTAAATTCATATAATCAAAC-
* * * * * * * ** *
1930282 TAAAAGACATATTTAAATTTTTATAAACAAAAATAAATTATAAGTTAAAAATTTAAACTCATATA
63 CAAAA-ATAAATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATA
** *
1930347 ATCGTAGCAAAAAATAA
127 ATTATA-CTAAAAATAA
* * ** * * * *
1930364 ATTTAAACTTCTACAAATAAAGATACTTAATAACCT-AAAATTTAAACTCGTATAATCAAA-CTA
1 ATTTAAACTTCTATAAATAAAAATAAATAATACCCTAAAAATTTAAATTCATATAATCAAACCAA
* * * *
1930427 AAA-AAATTTAAACTT-TACAAATAAAAATATATTATACCTTCACAAATTTAAACTTGCATAATT
66 AAATAAATTTAAACTTCTACAAATAAAAATAAATTATACCTT-AAAAATTTAAACTCGTATAATT
*
1930490 ATAC-ACAAAAAAA
130 ATACTA-AAAATAA
* * ** * * **
1930503 ATTGAAACTTCTATGAATAAAAAATATCCTAA-ACTCTAAAAATTTAAATTCTTATAATCATTCC
1 ATTTAAACTTCTATAAAT-AAAAATA-AATAATACCCTAAAAATTTAAATTCATATAATCA--AA
* * ** **
1930567 CCAAAAAATAAATCTAAACTTCTA-AGAATAAAGATAAATGGTATTTTAAAAATTTAAACTCGTA
62 CC-AAAAATAAATTTAAACTTCTACA-AATAAAAATAAATTATACCTTAAAAATTTAAACTCGTA
*
1930631 TAATCA-ATCT-AAAA-AA
125 TAATTATA-CTAAAAATAA
** *
1930647 ATTTAAACTTCTATAAA-AAAAATAAATTATATA-TTTAAAAATTTAAACTCATATAATCAAACC
1 ATTTAAACTTCTATAAATAAAAATAAA-TA-ATACCCTAAAAATTTAAATTCATATAATCAAACC
* * * * *
1930710 TAAAATACATATTTAAACTTCTACAAATTAAAATAAATTATACCCTAAAAATTTAAATTTGTATA
64 AAAAATA-A-ATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATA
*
1930775 ATTA-AATAAAAATAA
127 ATTATACTAAAAATAA
* * * * * *
1930790 ATTTAAACTTTTATAAATAAAAATAAATTATACCATCAAAAATTAAAATTCATATAATCATACTA
1 ATTTAAACTTCTATAAATAAAAATAAATAATACCCT-AAAAATTTAAATTCATATAATCAAACCA
* * * * *
1930855 AAAA-ACACATTTAAACTTCTATAAATAAAACTAAATTATACCCTAAAAATTTAAATTTGTATAA
65 AAAATA-A-ATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATAA
* *
1930919 TTATATTGAAAAACAA
128 TTATACT-AAAAATAA
* * *
1930935 ATTTAAACTTCTATAAATAAAGATTAATAATACCCTAAAAATTTAAATTCATATCATCAAACCAA
1 ATTTAAACTTCTATAAATAAAAATAAATAATACCCTAAAAATTTAAATTCATATAATCAAACCAA
* *
1931000 AAATTAAATTTAAACTTCTACAAATAAAAATAATTTATACCTTCAAAAATTTAAACTCGAATAAT
66 AAA-TAAATTTAAACTTCTACAAATAAAAATAAATTATACCTT-AAAAATTTAAACTCGTATAAT
* *
1931065 CATACTAAAAAATAT
129 TATACT-AAAAATAA
* * * * **
1931080 ATTTAAACTTCTACAAATCAAAATAAATTATACTCTAAAAATTTAAACTTGC--ATAATCAAATG
1 ATTTAAACTTCTATAAATAAAAATAAATAATACCCTAAAAATTTAAA-TT-CATATAATCAAACC
* * * *
1931143 AAAAACAAATCTAAATTTCTACAAATAAAAATAAATTATACCTTCAAAATTTAAACTCGTATAAT
64 AAAAATAAATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATAAT
*
1931208 TATACCCTATAAATAA
129 TATA--CTAAAAATAA
*
1931224 GTTTAAACTTCTATAAAT-AAAATAAATAATACC
1 ATTTAAACTTCTATAAATAAAAATAAATAATACC
1931257 TTTAATCAAA
Statistics
Matches: 730, Mismatches: 128, Indels: 73
0.78 0.14 0.08
Matches are distributed among these distances:
138 1 0.00
139 42 0.06
140 44 0.06
141 29 0.04
142 66 0.09
143 139 0.19
144 198 0.27
145 132 0.18
146 61 0.08
147 18 0.02
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (142 bp):
ATTTAAACTTCTATAAATAAAAATAAATAATACCCTAAAAATTTAAATTCATATAATCAAACCAA
AAATAAATTTAAACTTCTACAAATAAAAATAAATTATACCTTAAAAATTTAAACTCGTATAATTA
TACTAAAAATAA
Found at i:1931768 original size:65 final size:65
Alignment explanation
Indices: 1931692--1931833 Score: 257
Period size: 65 Copynumber: 2.2 Consensus size: 65
1931682 ATGTGAGATA
1931692 GCAATTTCTCAACATACCTTGGATGGCAATTTCTCATATGTCTTTAAACTTTGTCATTCAAGAAG
1 GCAATTTCTCAACATACCTTGGATGGCAATTTCTCATATGTCTTTAAACTTTGTCATTCAAGAAG
* * *
1931757 GCAATTTCTCAACATATCTTGGATGGCAATTTCTCATATGTCTTTAAACTTTGTCATTCGATAAG
1 GCAATTTCTCAACATACCTTGGATGGCAATTTCTCATATGTCTTTAAACTTTGTCATTCAAGAAG
1931822 GCAATTTCTCAA
1 GCAATTTCTCAA
1931834 TACGTTCGTA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 74 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (65 bp):
GCAATTTCTCAACATACCTTGGATGGCAATTTCTCATATGTCTTTAAACTTTGTCATTCAAGAAG
Found at i:1933210 original size:14 final size:15
Alignment explanation
Indices: 1933175--1933209 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
1933165 TTTATTTCAT
*
1933175 GAAAAATGATTTTTA
1 GAAAAATGATTTCTA
1933190 GAAAAATGATTTCTA
1 GAAAAATGATTTCTA
1933205 GAAAA
1 GAAAA
1933210 TAGACTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.31
Consensus pattern (15 bp):
GAAAAATGATTTCTA
Found at i:1935077 original size:90 final size:88
Alignment explanation
Indices: 1934968--1935445 Score: 293
Period size: 88 Copynumber: 5.4 Consensus size: 88
1934958 ACGACGTTAA
* * *
1934968 AGTATCCCTTCAGAATAGTGAAGATGGAGTTTCCCCAAAGATAAAA-CTATACAAAGGGCAAACT
1 AGTATCCCTTCAGAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATCT-TACAAA-GGAAAACT
*
1935032 TATAATTTTTGTAAGAATAGGGTTGG
64 TA-AATTTTTGTAAGAACAGGGTTGG
* * * * ** * *
1935058 AGTATCCCTTCGGAGTAGTGGGGATGAAGTTTCCCCAAGGGCAAAATCTTGCAAAGGAAAATTTA
1 AGTATCCCTTCAGAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATCTTACAAAGGAAAACTTA
**
1935123 AATTTTTGTTTGAACAGGGTTGG
66 AATTTTTGTAAGAACAGGGTTGG
* * * * *
1935146 AGTATCCCCTCAGAATAGTGAGGATGGAGTTTCCCTAAGGATAAAAT-TGT--GAAGGAATATTT
1 AGTATCCCTTCAGAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATCT-TACAAAGGAAAACTT
* * *
1935208 GATTCTTTTTTGAA-AAGCAGGGTTGG
65 AAAT-TTTTGT-AAGAA-CAGGGTTGG
* * * * * **
1935234 AGTGTTCCC-TC-GAATAGTGAGGATTGAGTTTTCCTAAGGATAAAAT-TATACGAAGGAAATTT
1 AGT-ATCCCTTCAGAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATCT-TACAAAGGAAAACT
* * * *
1935296 TGATTTTTTTTGAAGAACGGGGTTGG
64 TAAATTTTTGT-AAGAACAGGGTTGG
* * * * * *
1935322 AATGT-CCTCTCA-AAGAAGTGGGGATGGAGTTTCCCCAAAGATAAAAT-TATACGAAGGAAAA-
1 AGTATCCCT-TCAGAA-TAGTGAGGATGGAGTTTCCCCAAGGATAAAATCT-TACAAAGGAAAAC
* ***
1935383 TTCAATTTTT-TGAAG-GGTGGGTTGG
63 TTAAATTTTTGT-AAGAACAGGGTTGG
* * * *
1935408 AGTATCCCTTTAGAAGAGTG-GAGATGAAGTTTCTCCAA
1 AGTATCCCTTCAGAATAGTGAG-GATGGAGTTTCCCCAA
1935446 AATTAAAAAT
Statistics
Matches: 316, Mismatches: 56, Indels: 36
0.77 0.14 0.09
Matches are distributed among these distances:
85 1 0.00
86 44 0.14
87 54 0.17
88 105 0.33
89 67 0.21
90 43 0.14
91 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (88 bp):
AGTATCCCTTCAGAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATCTTACAAAGGAAAACTTA
AATTTTTGTAAGAACAGGGTTGG
Found at i:1935352 original size:89 final size:90
Alignment explanation
Indices: 1935137--1935381 Score: 279
Period size: 89 Copynumber: 2.8 Consensus size: 90
1935127 TTTGTTTGAA
* * * * *
1935137 CAGGGTTGGAGTATCCCCTCAGAATAGTGAGGATGGAGTTTCCCTAAGGATAAAATTGT--GAAG
1 CAGGGTTGGAATGTTCCCTCA-AAAAGTGAGGATGGAGTTTCCCTAAGGATAAAATTATACGAAG
1935200 G-AATATTTGATTCTTTTTTGAAAAG
65 GAAATATTTGATTCTTTTTTGAAAAG
* * * * *
1935225 CAGGGTTGGAGTGTTCCCTCGAATAGTGAGGATTGAGTTTTCCTAAGGATAAAATTATACGAAGG
1 CAGGGTTGGAATGTTCCCTCAAAAAGTGAGGATGGAGTTTCCCTAAGGATAAAATTATACGAAGG
1935290 AAAT-TTTGATT-TTTTTTGAAGAA-
66 AAATATTTGATTCTTTTTTGAA-AAG
* * * *
1935313 CGGGGTTGGAATG-TCCTCTCAAAGAAGTGGGGATGGAGTTTCCCCAAAGATAAAATTATACGAA
1 CAGGGTTGGAATGTTCC-CTCAAA-AAGTGAGGATGGAGTTTCCCTAAGGATAAAATTATACGAA
1935377 GGAAA
64 GGAAA
1935382 ATTCAATTTT
Statistics
Matches: 136, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
87 37 0.27
88 43 0.32
89 53 0.39
90 3 0.02
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (90 bp):
CAGGGTTGGAATGTTCCCTCAAAAAGTGAGGATGGAGTTTCCCTAAGGATAAAATTATACGAAGG
AAATATTTGATTCTTTTTTGAAAAG
Found at i:1935391 original size:89 final size:87
Alignment explanation
Indices: 1934968--1935393 Score: 339
Period size: 88 Copynumber: 4.8 Consensus size: 87
1934958 ACGACGTTAA
* * * * *
1934968 AGTATCCCTTCAGAATAGTGAAGATGGAGTTTCCCCAAAGATAAAACTATACAAAGGGCAAACTT
1 AGTATCCC-TCA-AATAGTGAGGATGGAGTTTCCCCAAGGATAAAATTATACGAA-GG-AAAATT
* *
1935033 ATAA-TTTTTGT-AAGAATAGGGTTGG
62 -TAATTTTTTTTGAAGAACAGGGTTGG
* * * * ** * *
1935058 AGTATCCCTTCGGAGTAGTGGGGATGAAGTTTCCCCAAGGGCAAAATCT-TGCAAAGGAAAATTT
1 AGTATCCC-TC-AAATAGTGAGGATGGAGTTTCCCCAAGGATAAAAT-TATACGAAGGAAAATTT
1935122 AAATTTTTGTTT---GAACAGGGTTGG
63 -AATTTTT-TTTGAAGAACAGGGTTGG
* * * *
1935146 AGTATCCCCTCAGAATAGTGAGGATGGAGTTTCCCTAAGGATAAAATTGT--GAAGGAATATTTG
1 AGTAT-CCCTCA-AATAGTGAGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGGAAAATTTA
1935209 ATTCTTTTTTGAA-AAGCAGGGTTGG
64 ATT-TTTTTTGAAGAA-CAGGGTTGG
* * * * * * *
1935234 AGTGTTCCCTCGAATAGTGAGGATTGAGTTTTCCTAAGGATAAAATTATACGAAGGAAATTTTGA
1 AGT-ATCCCTCAAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGGAAAATTTAA
*
1935299 TTTTTTTTGAAGAACGGGGTTGG
65 TTTTTTTTGAAGAACAGGGTTGG
* * * * * *
1935322 AATGTCCTCTCAAAGAAGTGGGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGGAAAATTCA
1 AGTATCC-CTCAAA-TAGTGAGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGGAAAATTTA
1935387 ATTTTTT
64 ATTTTTT
1935394 GAAGGGTGGG
Statistics
Matches: 274, Mismatches: 43, Indels: 39
0.77 0.12 0.11
Matches are distributed among these distances:
85 6 0.02
86 13 0.05
87 41 0.15
88 95 0.35
89 74 0.27
90 44 0.16
91 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (87 bp):
AGTATCCCTCAAATAGTGAGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGGAAAATTTAAT
TTTTTTTGAAGAACAGGGTTGG
Found at i:1936517 original size:29 final size:29
Alignment explanation
Indices: 1936480--1936536 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
1936470 GTTCAATTTG
*
1936480 TCCCCAAGATTGGATGACCAACTTGATGT
1 TCCCCAAGATTAGATGACCAACTTGATGT
*
1936509 TCCCTAAGATTAGATGACCAACTTGATG
1 TCCCCAAGATTAGATGACCAACTTGATG
1936537 AAAACATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (29 bp):
TCCCCAAGATTAGATGACCAACTTGATGT
Found at i:1939295 original size:79 final size:79
Alignment explanation
Indices: 1939188--1939451 Score: 309
Period size: 79 Copynumber: 3.4 Consensus size: 79
1939178 ATCGAGATTA
* * * * * *
1939188 GAGTATCCCCTTGGAGATGGTATGGTTGGAGTATCCTCGAGA-TAAAAATTTTAATATTTTGGAA
1 GAGTATCCCCTCGAAAATGATATGGTTGGAGTATCCCCGATAGTAAAAA-TTTAATATTTTGGAA
1939252 GTAAAAACGAGGTTG
65 GTAAAAACGAGGTTG
* * * * *
1939267 GAGTATCCCCTCGAAAATGATAGGGTTGGAGTATCCCCGATAGTAAAAAATTGATATTTTAGAAA
1 GAGTATCCCCTCGAAAATGATATGGTTGGAGTATCCCCGATAGTAAAAATTTAATATTTTGGAAG
**
1939332 TAAAAATAAGGTTG
66 TAAAAACGAGGTTG
* * *
1939346 GAGTATCCCCTCGAAAATGAT-TGGTT-GAGTATCCCCGATAGTGAAAATTCAATGCTTTTGGAA
1 GAGTATCCCCTCGAAAATGATATGGTTGGAGTATCCCCGATAGTAAAAATTTAAT-ATTTTGGAA
1939409 GTAAAAACGAGGTTG
65 GTAAAAACGAGGTTG
* * * *
1939424 GAGTATCCTCTCAAAAATTATGTGGTTG
1 GAGTATCCCCTCGAAAATGATATGGTTG
1939452 AAATATCCGT
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
77 23 0.15
78 41 0.26
79 85 0.55
80 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (79 bp):
GAGTATCCCCTCGAAAATGATATGGTTGGAGTATCCCCGATAGTAAAAATTTAATATTTTGGAAG
TAAAAACGAGGTTG
Found at i:1939690 original size:81 final size:80
Alignment explanation
Indices: 1939518--1939708 Score: 229
Period size: 81 Copynumber: 2.4 Consensus size: 80
1939508 GTCCCTTCAA
* * * *** * * * *
1939518 AAATAATAGAAAATTTGATGTTTTTAGAAATAAGAACGGGGTTGGAGTATCCTTCAAATATAGTG
1 AAAT-ATAGAAAATTTGATTTTTTTAGAAGTAAAAACGGGGTCAAAGTATCCCTCAAAAATAATA
*
1939583 AGATTGGAGTATCCCC
65 AGATTAGAGTATCCCC
* * * *
1939599 GAAGATAGAAACTTTGATTTTTTTAGAAGTAAAAATGGGGTCAAAGTATCCCCTCAAAAATAATA
1 AAATATAGAAAATTTGATTTTTTTAGAAGTAAAAACGGGGTCAAAGTAT-CCCTCAAAAATAATA
1939664 AGATTAGAGTATCCCC
65 AGATTAGAGTATCCCC
1939680 AAATATAGAAAATTTGATTTTTTTAGAAG
1 AAATATAGAAAATTTGATTTTTTTAGAAG
1939709 CAATAATAGT
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 37 0.41
81 54 0.59
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (80 bp):
AAATATAGAAAATTTGATTTTTTTAGAAGTAAAAACGGGGTCAAAGTATCCCTCAAAAATAATAA
GATTAGAGTATCCCC
Found at i:1940557 original size:19 final size:19
Alignment explanation
Indices: 1940513--1940568 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
1940503 CTGCCAATCT
*
1940513 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAC
*
1940533 CATGTATCGATACAATGAG
1 CATGTATCGATACAATGAC
1940552 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1940569 TATTGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:1943104 original size:13 final size:13
Alignment explanation
Indices: 1943086--1943127 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
1943076 AAATAGTATC
1943086 CAATGTATCAATA
1 CAATGTATCAATA
1943099 CAATGTATCAATA
1 CAATGTATCAATA
* *
1943112 TAATGTATCGATA
1 CAATGTATCAATA
1943125 CAA
1 CAA
1943128 GGAATGTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:1943186 original size:20 final size:20
Alignment explanation
Indices: 1943161--1943214 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
1943151 GGTTTTCCAG
1943161 ATGTATCGATACATGTCTCT
1 ATGTATCGATACATGTCTCT
1943181 ATGTATCGATACATGTCTCT
1 ATGTATCGATACATGTCTCT
1943201 ATGTATCGATACAT
1 ATGTATCGATACAT
1943215 TTTGAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATGTCTCT
Found at i:1949359 original size:14 final size:15
Alignment explanation
Indices: 1949327--1949359 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1949317 AAAAATAATG
*
1949327 AATAAATTTACACAA
1 AATAAATGTACACAA
1949342 AATAAATGTACA-AA
1 AATAAATGTACACAA
1949356 AATA
1 AATA
1949360 CATAAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.64, C:0.09, G:0.03, T:0.24
Consensus pattern (15 bp):
AATAAATGTACACAA
Found at i:1949799 original size:80 final size:79
Alignment explanation
Indices: 1949643--1949859 Score: 227
Period size: 80 Copynumber: 2.7 Consensus size: 79
1949633 GTAAAAACGG
* * * * * *** *
1949643 GGTTGGAGAATCCCTGATGGTGAAAATTTGATATTTTAGAAATAAAAACAAGGTTGGCGTATCCT
1 GGTTGAAGTATCCCCGATGGTAAAAATTTGATATTTTAGAAGTAAAAATGGGGTTGGCGTATCCC
* *
1949708 TTCAGAAATGATAC
66 CTCAAAAATGATAC
* *
1949722 GGTTGAAGTATCCCCGATGGTAAAAATTTGATGCTTTTGGAAGTAAAAATGGGGTTGGCGTATCC
1 GGTTGAAGTATCCCCGATGGTAAAAATTTGAT-ATTTTAGAAGTAAAAATGGGGTTGGCGTATCC
**
1949787 CCTCAAAAATGATGG
65 CCTCAAAAATGATAC
** * * * *
1949802 GGCAGAAATATCCCCGATGGTGAACAATTTAAAATTTTAGAAGTAAAAATGGGGTTGG
1 GGTTGAAGTATCCCCGATGGT-AAAAATTTGATATTTTAGAAGTAAAAATGGGGTTGG
1949860 ACTATCTCCC
Statistics
Matches: 113, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 28 0.25
80 77 0.68
81 8 0.07
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (79 bp):
GGTTGAAGTATCCCCGATGGTAAAAATTTGATATTTTAGAAGTAAAAATGGGGTTGGCGTATCCC
CTCAAAAATGATAC
Found at i:1949940 original size:82 final size:81
Alignment explanation
Indices: 1949836--1949992 Score: 199
Period size: 81 Copynumber: 1.9 Consensus size: 81
1949826 CAATTTAAAA
*** * * *
1949836 TTTTAGAAGTAAAAATGGGGTTGGACTATCTCCCTTAG-AAATAATGGGATTGGAGTATCCCCAT
1 TTTTAGAAGTAAAAACAAGGTTGGACTATC-CCC-TAGAAAATAATGGGATTAGAGTATCACCAA
1949900 AGATGGAAAATTCGATGT
64 AGATGGAAAATTCGATGT
** * *
1949918 TTTTAGAAGTAAAAACAAGGTTGGTGTATCCCCTCGAAAATAGTGGGATTAGAGTATCACCAAAG
1 TTTTAGAAGTAAAAACAAGGTTGGACTATCCCCTAGAAAATAATGGGATTAGAGTATCACCAAAG
1949983 ATGGAAAATT
66 ATGGAAAATT
1949993 TGATTGTTGA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
80 2 0.03
81 37 0.58
82 25 0.39
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (81 bp):
TTTTAGAAGTAAAAACAAGGTTGGACTATCCCCTAGAAAATAATGGGATTAGAGTATCACCAAAG
ATGGAAAATTCGATGT
Found at i:1951547 original size:13 final size:13
Alignment explanation
Indices: 1951529--1951559 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1951519 ACATTTCTTC
1951529 ATGTATCGATACA
1 ATGTATCGATACA
1951542 ATGTATCGATACA
1 ATGTATCGATACA
*
1951555 TTGTA
1 ATGTA
1951560 CCATATATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1951643 original size:13 final size:13
Alignment explanation
Indices: 1951625--1951651 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1951615 ACAATTGTCC
1951625 ATGTATCGATACA
1 ATGTATCGATACA
1951638 ATGTATCGATACA
1 ATGTATCGATACA
1951651 A
1 A
1951652 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1958003 original size:20 final size:21
Alignment explanation
Indices: 1957971--1958018 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
1957961 GAATCATGCA
*
1957971 AATTTTTATTTTTC-TTAGCT
1 AATTTTTATTTTTCATTAGCC
1957991 AATTTATTA-TTTTCATTAGCC
1 AATTT-TTATTTTTCATTAGCC
1958012 AATTTTT
1 AATTTTT
1958019 TAATACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.25, C:0.10, G:0.04, T:0.60
Consensus pattern (21 bp):
AATTTTTATTTTTCATTAGCC
Found at i:1960330 original size:13 final size:13
Alignment explanation
Indices: 1960312--1960338 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1960302 ACAATTGTCC
1960312 ATGTATCGATACA
1 ATGTATCGATACA
1960325 ATGTATCGATACA
1 ATGTATCGATACA
1960338 A
1 A
1960339 AGCAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1960744 original size:19 final size:20
Alignment explanation
Indices: 1960700--1960752 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
1960690 CTGCCAATCT
*
1960700 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATA
1960720 CATGTATCGATACAATTA-A
1 CATGTATCGATACAATTATA
1960739 CATGTATCGATACA
1 CATGTATCGATACA
1960753 TCTAGGTGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTATA
Found at i:1961351 original size:36 final size:36
Alignment explanation
Indices: 1961278--1961374 Score: 135
Period size: 36 Copynumber: 2.7 Consensus size: 36
1961268 TTTTCATTTC
* * *
1961278 TCTCCCCCTTAATCAAAGCATTTCT-AAAAAAATTT
1 TCTCCCTCTTAATCAAAGCAATTCTCAAAAAAAATT
1961313 TCT-CCTCTTTAATCAAAGCAATTCTCAAAAAAAATT
1 TCTCCCTC-TTAATCAAAGCAATTCTCAAAAAAAATT
*
1961349 TCTCCCTCTTAATTAAAGCAATTCTC
1 TCTCCCTCTTAATCAAAGCAATTCTC
1961375 CACCTTTGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.05
35 19 0.35
36 29 0.53
37 4 0.07
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (36 bp):
TCTCCCTCTTAATCAAAGCAATTCTCAAAAAAAATT
Found at i:1961905 original size:13 final size:13
Alignment explanation
Indices: 1961887--1961912 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1961877 TACACCAAGT
1961887 ATGTATCGATACA
1 ATGTATCGATACA
1961900 ATGTATCGATACA
1 ATGTATCGATACA
1961913 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1961910 original size:32 final size:33
Alignment explanation
Indices: 1961869--1961932 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1961859 TAGCCAAACT
* **
1961869 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1961901 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1961933 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1965970 original size:15 final size:15
Alignment explanation
Indices: 1965950--1965980 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1965940 TAAAAATGTC
*
1965950 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1965965 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1965980 C
1 C
1965981 CACAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1973171 original size:13 final size:13
Alignment explanation
Indices: 1973153--1973181 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
1973143 AAATAGTACC
1973153 CAATGTATCGATA
1 CAATGTATCGATA
1973166 CAATGTATCGATA
1 CAATGTATCGATA
1973179 CAA
1 CAA
1973182 GGAATGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1973195 original size:33 final size:33
Alignment explanation
Indices: 1973156--1973233 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
1973146 TAGTACCCAA
1973156 TGTATCGATACAATGTATCGATACAAGGAATGT
1 TGTATCGATACAATGTATCGATACAAGGAATGT
* *
1973189 TTTATCGATAAAATGTATCGATACAAGGAATGT
1 TGTATCGATACAATGTATCGATACAAGGAATGT
1973222 TGTATCGATACA
1 TGTATCGATACA
1973234 TTTGGGTACA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAATGTATCGATACAAGGAATGT
Found at i:1973196 original size:20 final size:19
Alignment explanation
Indices: 1973171--1973233 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
1973161 CGATACAATG
1973171 TATCGATACAAGGAATGTTT
1 TATCGATACAAGGAATG-TT
1973191 TATCGAT--AA--AATG--
1 TATCGATACAAGGAATGTT
1973204 TATCGATACAAGGAATGTT
1 TATCGATACAAGGAATGTT
1973223 GTATCGATACA
1 -TATCGATACA
1973234 TTTGGGTACA
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
13 7 0.19
15 2 0.06
16 4 0.11
17 4 0.11
18 2 0.06
20 17 0.47
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (19 bp):
TATCGATACAAGGAATGTT
Found at i:1973300 original size:13 final size:13
Alignment explanation
Indices: 1973282--1973306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1973272 AATAGTACCC
1973282 AATGTATCGATAT
1 AATGTATCGATAT
1973295 AATGTATCGATA
1 AATGTATCGATA
1973307 CAAGGAACGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:1979503 original size:33 final size:33
Alignment explanation
Indices: 1979466--1979529 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
1979456 ACAAGTGATG
*
1979466 TATCGATACAATT-CATCATGTATCGATACAATA
1 TATCGATAC-ATTGCACCATGTATCGATACAATA
*
1979499 TATCGATACATTGTACCATGTATCGATACAA
1 TATCGATACATTGCACCATGTATCGATACAA
1979530 ACAGTGGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.11
33 25 0.89
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (33 bp):
TATCGATACATTGCACCATGTATCGATACAATA
Found at i:1979598 original size:63 final size:63
Alignment explanation
Indices: 1979499--1979655 Score: 298
Period size: 63 Copynumber: 2.5 Consensus size: 63
1979489 CGATACAATA
1979499 TATCGATAC-ATTGTACCATGTATCGATACAAACAGTGGTAGGGTAGCTACTGCCAATCTCACG
1 TATCGATACAATTGT-CCATGTATCGATACAAACAGTGGTAGGGTAGCTACTGCCAATCTCACG
1979562 TATCGATACAATTGTCCATGTATCGATACAAACAGTGGTAGGGTAGCTACTGCCAATCTCACG
1 TATCGATACAATTGTCCATGTATCGATACAAACAGTGGTAGGGTAGCTACTGCCAATCTCACG
1979625 TATCGATACAATTGTCCATGTATCGATACAA
1 TATCGATACAATTGTCCATGTATCGATACAA
1979656 TTAACATGTA
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
63 88 0.95
64 5 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (63 bp):
TATCGATACAATTGTCCATGTATCGATACAAACAGTGGTAGGGTAGCTACTGCCAATCTCACG
Found at i:1979665 original size:19 final size:19
Alignment explanation
Indices: 1979624--1979726 Score: 110
Period size: 19 Copynumber: 5.7 Consensus size: 19
1979614 CCAATCTCAC
**
1979624 GTATCGATACAATTGTCCAT
1 GTATCGATACAATT-AACAT
1979644 GTATCGATACAATTAACAT
1 GTATCGATACAATTAACAT
1979663 GTATCGATACAATTAACAT
1 GTATCGATACAATTAACAT
*
1979682 GTATTGATAC-----A-AT
1 GTATCGATACAATTAACAT
*
1979695 GTATCGATATAATTAACAT
1 GTATCGATACAATTAACAT
*
1979714 ATATCGATACAAT
1 GTATCGATACAAT
1979727 GTATCGATAC
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
13 10 0.14
14 1 0.01
18 1 0.01
19 44 0.63
20 14 0.20
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
GTATCGATACAATTAACAT
Found at i:1979702 original size:32 final size:32
Alignment explanation
Indices: 1979661--1979738 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
1979651 TACAATTAAC
* *
1979661 ATGTATCGATACAATTAACATGTATTGATACA
1 ATGTATCGATACAATTAACATATATCGATACA
*
1979693 ATGTATCGATATAATTAACATATATCGATACA
1 ATGTATCGATACAATTAACATATATCGATACA
1979725 ATGTATCGATACAA
1 ATGTATCGATACAA
1979739 AGCATAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (32 bp):
ATGTATCGATACAATTAACATATATCGATACA
Found at i:1980204 original size:81 final size:81
Alignment explanation
Indices: 1980060--1980209 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
1980050 TTTTAGAAGA
*
1980060 AAAAATGGGGTTGGAGTATCCCCTCGAAAATAGTGGGATTGGAGTATCCCCAAAGATAGAAAATT
1 AAAAATGGGGTTGGAGTATCCCCTCGAAAATAGTGGGATTGGAGTATCCCCAAAGATAAAAAATT
1980125 TGATTTCTTGAGAAAT
66 TGATTTCTTGAGAAAT
* * * * * *
1980141 AAAAATGGGGTTGGAGTATCCCCTCGAAAATTGTAGGG-TTTGAGTATCCTCGATGGTAAAAAAT
1 AAAAATGGGGTTGGAGTATCCCCTCGAAAATAGT-GGGATTGGAGTATCCCCAAAGATAAAAAAT
1980205 TTGAT
65 TTGAT
1980210 GCTTTTGGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 58 0.95
82 3 0.05
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (81 bp):
AAAAATGGGGTTGGAGTATCCCCTCGAAAATAGTGGGATTGGAGTATCCCCAAAGATAAAAAATT
TGATTTCTTGAGAAAT
Found at i:1981107 original size:16 final size:16
Alignment explanation
Indices: 1981086--1981118 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1981076 TGACCCTGAA
1981086 AGAACCCGAA-CCCGAG
1 AGAACCC-AATCCCGAG
1981102 AGAACCCAATCCCGAG
1 AGAACCCAATCCCGAG
1981118 A
1 A
1981119 CTGACCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.39, C:0.36, G:0.21, T:0.03
Consensus pattern (16 bp):
AGAACCCAATCCCGAG
Found at i:1981606 original size:16 final size:15
Alignment explanation
Indices: 1981585--1981614 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1981575 ATGTTACACT
1981585 TAGAATAGCAATATAG
1 TAGAATAG-AATATAG
1981601 TAGAATAGAATATA
1 TAGAATAGAATATA
1981615 AAGTTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.27
Consensus pattern (15 bp):
TAGAATAGAATATAG
Found at i:1982031 original size:14 final size:15
Alignment explanation
Indices: 1982011--1982039 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1982001 AAGATTTGGA
1982011 TTTTTTTTATTTCAC
1 TTTTTTTTATTTCAC
1982026 TTTTTTTTATTTCA
1 TTTTTTTTATTTCA
1982040 ATTGAGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTTTATTTCAC
Found at i:1982544 original size:16 final size:16
Alignment explanation
Indices: 1982523--1982594 Score: 54
Period size: 16 Copynumber: 4.4 Consensus size: 16
1982513 GAACCTGAAT
1982523 CCGAACCCGAATAAGC
1 CCGAACCCGAATAAGC
** *
1982539 CCGAACCTTAAAAAGC
1 CCGAACCCGAATAAGC
** * *
1982555 TTGAACCCAAAATGAGC
1 CCGAACCC-GAATAAGC
* *
1982572 CCGAACTCGAATGAGC
1 CCGAACCCGAATAAGC
1982588 CCGAACC
1 CCGAACC
1982595 TAAACCTGCC
Statistics
Matches: 41, Mismatches: 14, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
16 31 0.76
17 10 0.24
ACGTcount: A:0.38, C:0.33, G:0.18, T:0.11
Consensus pattern (16 bp):
CCGAACCCGAATAAGC
Found at i:1984480 original size:13 final size:13
Alignment explanation
Indices: 1984456--1984495 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
1984446 TACTGTTCAT
*
1984456 AATGTATTGATAC
1 AATGTATCGATAC
*
1984469 ACTGTATCGATAC
1 AATGTATCGATAC
1984482 AATGTATCGATAC
1 AATGTATCGATAC
1984495 A
1 A
1984496 TGAACAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:1984521 original size:11 final size:11
Alignment explanation
Indices: 1984495--1984527 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
1984485 GTATCGATAC
*
1984495 ATGAACAGT-T
1 ATGAACAGTGA
1984505 ATGAACAGTGA
1 ATGAACAGTGA
1984516 ATGAACAGTGA
1 ATGAACAGTGA
1984527 A
1 A
1984528 CAGTGATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.21
Consensus pattern (11 bp):
ATGAACAGTGA
Found at i:1984593 original size:11 final size:11
Alignment explanation
Indices: 1984564--1984596 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
1984554 TGTAGCATAC
1984564 ATGAACAGT-A
1 ATGAACAGTGA
*
1984574 ATGATCAGTGA
1 ATGAACAGTGA
1984585 ATGAACAGTGA
1 ATGAACAGTGA
1984596 A
1 A
1984597 AAATGAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.21
Consensus pattern (11 bp):
ATGAACAGTGA
Found at i:1985610 original size:21 final size:21
Alignment explanation
Indices: 1985586--1985661 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
1985576 GACATAGTCT
1985586 TGTATCGATACATTTTAGACA
1 TGTATCGATACATTTTAGACA
* ***
1985607 TGTATCGATACA-TTCACTTA
1 TGTATCGATACATTTTAGACA
1985627 TGTATCGATACATTTTAGACA
1 TGTATCGATACATTTTAGACA
* *
1985648 TATATCAATACATT
1 TGTATCGATACATT
1985662 CACTTATGTA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 28 0.64
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (21 bp):
TGTATCGATACATTTTAGACA
Found at i:1985643 original size:41 final size:41
Alignment explanation
Indices: 1985586--1985681 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
1985576 GACATAGTCT
* *
1985586 TGTATCGATACATTTTAGACATGTATCGATACATTCACTTA
1 TGTATCGATACATTTTAGACATATATCAATACATTCACTTA
1985627 TGTATCGATACATTTTAGACATATATCAATACATTCACTTA
1 TGTATCGATACATTTTAGACATATATCAATACATTCACTTA
1985668 TGTATCGATACATT
1 TGTATCGATACATT
1985682 CACTTATTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (41 bp):
TGTATCGATACATTTTAGACATATATCAATACATTCACTTA
Found at i:1985698 original size:21 final size:20
Alignment explanation
Indices: 1985606--1985698 Score: 105
Period size: 20 Copynumber: 4.5 Consensus size: 20
1985596 CATTTTAGAC
1985606 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
* ***
1985626 ATGTATCGATACATTTTAGAC
1 ATGTATCGATACA-TTCACTT
* *
1985647 ATATATCAATACATTCACTT
1 ATGTATCGATACATTCACTT
1985667 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTCACTT
*
1985687 ATTGTATTGATA
1 A-TGTATCGATA
1985699 TAAATTGTAG
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 35 0.60
21 23 0.40
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:1985759 original size:21 final size:21
Alignment explanation
Indices: 1985733--1985806 Score: 130
Period size: 21 Copynumber: 3.5 Consensus size: 21
1985723 TAACCACATA
* *
1985733 TATCGATACATAGAAGGCGTG
1 TATCGATACATGGAAGGCATG
1985754 TATCGATACATGGAAGGCATG
1 TATCGATACATGGAAGGCATG
1985775 TATCGATACATGGAAGGCATG
1 TATCGATACATGGAAGGCATG
1985796 TATCGATACAT
1 TATCGATACAT
1985807 TTAGGAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.26
Consensus pattern (21 bp):
TATCGATACATGGAAGGCATG
Found at i:1989668 original size:18 final size:18
Alignment explanation
Indices: 1989641--1989676 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1989631 TAGAGAGGTG
1989641 TCCAAGTTTAATTTAAAT
1 TCCAAGTTTAATTTAAAT
*
1989659 TCCAATTTTAATTTAAAT
1 TCCAAGTTTAATTTAAAT
1989677 AAAACTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (18 bp):
TCCAAGTTTAATTTAAAT
Found at i:1989938 original size:21 final size:21
Alignment explanation
Indices: 1989912--1989951 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1989902 TTTAAATAAG
*
1989912 ATTATTTAGATATTTAATTTT
1 ATTATTTAAATATTTAATTTT
1989933 ATTATTTAAATATTTAATT
1 ATTATTTAAATATTTAATT
1989952 ATCCATATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
ATTATTTAAATATTTAATTTT
Found at i:1990070 original size:17 final size:17
Alignment explanation
Indices: 1990027--1990072 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
1990017 TTACAAATCC
*
1990027 TTAT-CTAAATAAATAT
1 TTATCCTAATTAAATAT
*
1990043 TTA-CCAAAATTAAATAT
1 TTATCC-TAATTAAATAT
1990060 TTATCCTAATTAA
1 TTATCCTAATTAA
1990073 GTAATACAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 4 0.17
17 18 0.75
18 2 0.08
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (17 bp):
TTATCCTAATTAAATAT
Found at i:1990425 original size:29 final size:29
Alignment explanation
Indices: 1990392--1990450 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
1990382 GAATAGCCTT
* *
1990392 AATCTAATTACCTTGTCATATATGTTATA
1 AATCTAATTACCTTATCATATATGTAATA
1990421 AATCTAATTACCTTATCATATATGTAATA
1 AATCTAATTACCTTATCATATATGTAATA
1990450 A
1 A
1990451 CCTTATATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (29 bp):
AATCTAATTACCTTATCATATATGTAATA
Found at i:1992026 original size:33 final size:33
Alignment explanation
Indices: 1991984--1992046 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
1991974 ACCTTTATTT
*
1991984 TTTTTTAACATAACATTCAAATAATTTAGTAGG
1 TTTTTTAACATAACATACAAATAATTTAGTAGG
*
1992017 TTTTTTAACATAACATACAATTAATTTAGT
1 TTTTTTAACATAACATACAAATAATTTAGT
1992047 GTTGTATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (33 bp):
TTTTTTAACATAACATACAAATAATTTAGTAGG
Found at i:1994209 original size:4 final size:4
Alignment explanation
Indices: 1994200--1994224 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1994190 TAAGCTAAAC
1994200 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
1994225 CACTCTACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:1996916 original size:3 final size:3
Alignment explanation
Indices: 1996910--1996943 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
1996900 AAAAGAAAAT
1996910 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1996944 GAGCATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1997189 original size:40 final size:41
Alignment explanation
Indices: 1997119--1997235 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 41
1997109 TGATCATGAG
* * **
1997119 TATCTAAGATCCATTATC-GACACTCCAACTCAAAAGTGAA
1 TATCTAAGATTCATGATCAGACACTAGAACTCAAAAGTGAA
* * * *
1997159 TATCTATGATTCATGA-CTGATACTAGAACTCAAAAGTGAG
1 TATCTAAGATTCATGATCAGACACTAGAACTCAAAAGTGAA
* *
1997199 TATCTAAGGTTCATGATCAGACACTAGGACTCAAAAG
1 TATCTAAGATTCATGATCAGACACTAGAACTCAAAAG
1997236 GATCATAGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.71
41 17 0.27
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.26
Consensus pattern (41 bp):
TATCTAAGATTCATGATCAGACACTAGAACTCAAAAGTGAA
Found at i:2002481 original size:21 final size:21
Alignment explanation
Indices: 2002434--2002489 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
2002424 GCAGAATGGT
2002434 TTTGTATCGATACATTTCAGG
1 TTTGTATCGATACATTTCAGG
** *
2002455 CATGTATCGATACATTT-ACTG
1 TTTGTATCGATACATTTCA-GG
2002476 TTTGTATCGATACA
1 TTTGTATCGATACA
2002490 AATTGTAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (21 bp):
TTTGTATCGATACATTTCAGG
Found at i:2003256 original size:52 final size:52
Alignment explanation
Indices: 2003200--2003710 Score: 214
Period size: 52 Copynumber: 9.7 Consensus size: 52
2003190 GAAGAATTCT
* * * *
2003200 AATGTGCTGATTCAAGGTCAGCGACATTAAACTTAAAAATGACAAGGGTGCC
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAGGTGCC
* * * * * *
2003252 AATGTGCTGGTTTAAGGCCAACAACATTAGGCTTAAAAATGTCAAATGTGCC
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAGGTGCC
* * * * * *
2003304 TATATGTTGATTCAAGGCCAGCAACATTAGACTTAGAAAGA-GATAATGGTGCTG
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTA-AAA-ATGACAAAGGTGC-C
* * * ** * *
2003358 ATATAT-C-GATTCAAGGCTAACAATGTCAGACCTAAAGATGATAAGGGTGA-AAAGAGTGCC
1 A-ATGTGCTGATTCAAGGCCAGCAACATTAGA-CT-TA-A--A-AA---TGACAAAG-GTGCC
** * * ** * * * * **
2003418 AATGTATTGATTCACGACCAGTGACATTAGACTTGAAGATGA-GAAGAATGTT
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAG-GTGCC
*** * * * *
2003470 AATGTGCTGATTCAAGGCCAATGACATTAGACTTAAAAATTA-GAAGAAT--T
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAG-GTGCC
* * ** * *
2003520 AATGTGCTGATTCAAGGCCAGCGACATTGGGA-TTAGGAATGATAAAGATGCC
1 AATGTGCTGATTCAAGGCCAGCAACATT-AGACTTAAAAATGACAAAGGTGCC
* ** * * * *
2003572 AATATGCTGATTCAAGGTTAGCAATATCAGACTTAAAGATGATAAAGGTGCC
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAGGTGCC
* * * * * *
2003624 AATATGCTGATTCAAGGCCAGCGATATTAGATTTAAGAAA-GAAAAAGGTGCT
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAA-AAATGACAAAGGTGCC
** *
2003676 AATGTGCTGATTCAAGGCCAGTGACATTGGACTTA
1 AATGTGCTGATTCAAGGCCAGCAACATTAGACTTA
2003711 GAAAGAGATC
Statistics
Matches: 347, Mismatches: 90, Indels: 44
0.72 0.19 0.09
Matches are distributed among these distances:
50 36 0.10
51 7 0.02
52 229 0.66
53 30 0.09
54 3 0.01
55 8 0.02
56 1 0.00
57 2 0.01
58 2 0.01
59 3 0.01
60 6 0.02
61 20 0.06
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (52 bp):
AATGTGCTGATTCAAGGCCAGCAACATTAGACTTAAAAATGACAAAGGTGCC
Found at i:2003709 original size:104 final size:102
Alignment explanation
Indices: 2003469--2003710 Score: 238
Period size: 104 Copynumber: 2.4 Consensus size: 102
2003459 AGAAGAATGT
* * *
2003469 TAATGTGCTGATTCAAGGCCAATGACATTAGACTTAAAAATTAGAAGAATTAATGTGCTGATTCA
1 TAATGTGCTGATTCAAGGCCAGTGACATTAGACTTAAAAATTAGAAGAATCAATATGCTGATTCA
* * * *
2003534 AGGCCAGCGACATTGGGATTAGGAATGATAAAGATGC
66 AGGCCAGCGACATTGAGATTAAGAAAGAAAAAGATGC
* * ** ** * * * *
2003571 CAATATGCTGATTCAAGGTTAGCAATATCAGACTTAAAGATGATA-AAG-GTGCCAATATGCTGA
1 TAATGTGCTGATTCAAGGCCAGTGACATTAGACTTAAAAAT--TAGAAGAAT--CAATATGCTGA
* *
2003634 TTCAAGGCCAGCGATATT-AGATTTAAGAAAGAAAAAGGTGC
62 TTCAAGGCCAGCGACATTGAGA-TTAAGAAAGAAAAAGATGC
*
2003675 TAATGTGCTGATTCAAGGCCAGTGACATTGGACTTA
1 TAATGTGCTGATTCAAGGCCAGTGACATTAGACTTA
2003711 GAAAGAGATC
Statistics
Matches: 107, Mismatches: 28, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
102 32 0.30
103 5 0.05
104 70 0.65
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (102 bp):
TAATGTGCTGATTCAAGGCCAGTGACATTAGACTTAAAAATTAGAAGAATCAATATGCTGATTCA
AGGCCAGCGACATTGAGATTAAGAAAGAAAAAGATGC
Found at i:2003880 original size:32 final size:33
Alignment explanation
Indices: 2003813--2003912 Score: 141
Period size: 32 Copynumber: 3.1 Consensus size: 33
2003803 AGAGAGTTAT
* * *
2003813 CACCAACTTGTGTGGGCTTTAGAAAGGGGTTGC
1 CACCGACTTATGTTGGCTTTAGAAAGGGGTTGC
*
2003846 CACCGACTTTTGTTGGCTTTAGAAA-GGGTTGC
1 CACCGACTTATGTTGGCTTTAGAAAGGGGTTGC
*
2003878 CACCGACTTATG-TGGCTTTTGAAAGGGGTTGC
1 CACCGACTTATGTTGGCTTTAGAAAGGGGTTGC
2003910 CAC
1 CAC
2003913 TAACTTGTGT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
31 11 0.18
32 28 0.46
33 22 0.36
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (33 bp):
CACCGACTTATGTTGGCTTTAGAAAGGGGTTGC
Found at i:2004883 original size:27 final size:27
Alignment explanation
Indices: 2004853--2004923 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 27
2004843 GTAAAAAAAT
*
2004853 TATTTAATTATTTTTAAAATATTTATA
1 TATTTAATTATTTTTAAAATAATTATA
* *
2004880 TATTTATATTATTTTTTATATTAATTATA
1 TATTTA-ATTA-TTTTTAAAATAATTATA
2004909 T-TTTAATTATTTTTA
1 TATTTAATTATTTTTA
2004924 TATTATAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 6 0.15
27 10 0.26
28 8 0.21
29 15 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
TATTTAATTATTTTTAAAATAATTATA
Found at i:2009047 original size:22 final size:21
Alignment explanation
Indices: 2009006--2009049 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
2008996 TGATACATAG
*
2009006 TTGGATGAAAGAATGCATTTT
1 TTGGATGAAAGAATGAATTTT
2009027 TTGGATGAAAAGATAT-AATTTT
1 TTGGATG-AAAGA-ATGAATTTT
2009049 T
1 T
2009050 ATAATCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 11 0.55
23 2 0.10
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.41
Consensus pattern (21 bp):
TTGGATGAAAGAATGAATTTT
Found at i:2009997 original size:22 final size:21
Alignment explanation
Indices: 2009956--2009999 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
2009946 TGATACATAG
*
2009956 TTGGATGAAAGAATGCATTTT
1 TTGGATGAAAGAATGAATTTT
2009977 TTGGATGAAAAGATAT-AATTTT
1 TTGGATG-AAAGA-ATGAATTTT
2009999 T
1 T
2010000 ATAATCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 7 0.35
22 11 0.55
23 2 0.10
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.41
Consensus pattern (21 bp):
TTGGATGAAAGAATGAATTTT
Found at i:2010262 original size:950 final size:950
Alignment explanation
Indices: 2008424--2010304 Score: 3744
Period size: 950 Copynumber: 2.0 Consensus size: 950
2008414 TCTGATAATC
2008424 ATTAGTTTTAAGGTTTAAAGAGTAATAATAAGTTACTTTAATGACTAGGCACTAAAAAATAGGAT
1 ATTAGTTTTAAGGTTTAAAGAGTAATAATAAGTTACTTTAATGACTAGGCACTAAAAAATAGGAT
2008489 TCAGCAATAAATAGTTTAGGAGGATAAATTAAACTTTTAATAGATTGATAATTATATTGTCATAA
66 TCAGCAATAAATAGTTTAGGAGGATAAATTAAACTTTTAATAGATTGATAATTATATTGTCATAA
2008554 AGATTCTACCTATATGAATATAGAATTGGTGCCACTTTTAACAAGAGTTTAAGGGTTTTACTCTT
131 AGATTCTACCTATATGAATATAGAATTGGTGCCACTTTTAACAAGAGTTTAAGGGTTTTACTCTT
*
2008619 ATAAATATTTATGAAACCAGAATCAGCACATGGCCATAATAGTGTTAAAGCAATAGAAAAACTTT
196 ATAAATATTTATGAAACCAGAATCAGCACATGGCCATAATAGTGCTAAAGCAATAGAAAAACTTT
2008684 TATTCTTTTCTTTTAATATAGTTATGTGTGATTTATTCAGTTTTAACTCAAAAGTAATGGTTTAA
261 TATTCTTTTCTTTTAATATAGTTATGTGTGATTTATTCAGTTTTAACTCAAAAGTAATGGTTTAA
2008749 ACGACTAGTCACCTATTACTTTATTGAAACTTTGATAAGTATATACTAATGGAAGGTTTAAATCT
326 ACGACTAGTCACCTATTACTTTATTGAAACTTTGATAAGTATATACTAATGGAAGGTTTAAATCT
2008814 AGTAATACATTTCCTTTAGGTATAACTATATAGTTTATAATATTTTAGAATTTGTAATCGAGTGG
391 AGTAATACATTTCCTTTAGGTATAACTATATAGTTTATAATATTTTAGAATTTGTAATCGAGTGG
2008879 GGGATTATTGTAATTTTACTAAATAGTAGTTATAAATTCATAACCATCTAATAATCATCTTGGAT
456 GGGATTATTGTAATTTTACTAAATAGTAGTTATAAATTCATAACCATCTAATAATCATCTTGGAT
2008944 AAAAAGGTATATAGACATCATCTTTTATATGAAAATATGCATTTGGATGAAATGATACATAGTTG
521 AAAAAGGTATATAGACATCATCTTTTATATGAAAATATGCATTTGGATGAAATGATACATAGTTG
2009009 GATGAAAGAATGCATTTTTTGGATGAAAAGATATAATTTTTATAATCAAAAGTTATCATAATTTA
586 GATGAAAGAATGCATTTTTTGGATGAAAAGATATAATTTTTATAATCAAAAGTTATCATAATTTA
2009074 TGAAAAGACTAATCAATTGGGACATGTATTTTTTATTATATCTTTTGGGAACCTATAAATACTAA
651 TGAAAAGACTAATCAATTGGGACATGTATTTTTTATTATATCTTTTGGGAACCTATAAATACTAA
2009139 CTTTAATTGTCAAAATTTTTATTCAAAATCATTTCCAAAAAAATTAGAGTTTACTAAAAAAAAAG
716 CTTTAATTGTCAAAATTTTTATTCAAAATCATTTCCAAAAAAATTAGAGTTTACTAAAAAAAAAG
2009204 AGATTAGAGAGTTTTTCAATATTGCTAGTTATAAAACTTATAAAGGCTTTATTGTATCCTAGGAG
781 AGATTAGAGAGTTTTTCAATATTGCTAGTTATAAAACTTATAAAGGCTTTATTGTATCCTAGGAG
2009269 TATTATTATCTTGACCCGTTAACAAACTTTGTATGAAAACAAATAACTTTATAAAGAAAGTGATT
846 TATTATTATCTTGACCCGTTAACAAACTTTGTATGAAAACAAATAACTTTATAAAGAAAGTGATT
2009334 CATCGCGCTTCGAAATCTTGACCCGTTAACTAACTTTTCA
911 CATCGCGCTTCGAAATCTTGACCCGTTAACTAACTTTTCA
*
2009374 ATTAGTTTTAAGGTTTAAAGAGTAATAATAAGTTGCTTTAATGACTAGGCACTAAAAAATAGGAT
1 ATTAGTTTTAAGGTTTAAAGAGTAATAATAAGTTACTTTAATGACTAGGCACTAAAAAATAGGAT
2009439 TCAGCAATAAATAGTTTAGGAGGATAAATTAAACTTTTAATAGATTGATAATTATATTGTCATAA
66 TCAGCAATAAATAGTTTAGGAGGATAAATTAAACTTTTAATAGATTGATAATTATATTGTCATAA
2009504 AGATTCTACCTATATGAATATAGAATTGGTGCCACTTTTAACAAGAGTTTAAGGGTTTTACTCTT
131 AGATTCTACCTATATGAATATAGAATTGGTGCCACTTTTAACAAGAGTTTAAGGGTTTTACTCTT
2009569 ATAAATATTTATGAAACCAGAATCAGCACATGGCCATAATAGTGCTAAAGCAATAGAAAAACTTT
196 ATAAATATTTATGAAACCAGAATCAGCACATGGCCATAATAGTGCTAAAGCAATAGAAAAACTTT
2009634 TATTCTTTTCTTTTAATATAGTTATGTGTGATTTATTCAGTTTTAACTCAAAAGTAATGGTTTAA
261 TATTCTTTTCTTTTAATATAGTTATGTGTGATTTATTCAGTTTTAACTCAAAAGTAATGGTTTAA
2009699 ACGACTAGTCACCTATTACTTTATTGAAACTTTGATAAGTATATACTAATGGAAGGTTTAAATCT
326 ACGACTAGTCACCTATTACTTTATTGAAACTTTGATAAGTATATACTAATGGAAGGTTTAAATCT
2009764 AGTAATACATTTCCTTTAGGTATAACTATATAGTTTATAATATTTTAGAATTTGTAATCGAGTGG
391 AGTAATACATTTCCTTTAGGTATAACTATATAGTTTATAATATTTTAGAATTTGTAATCGAGTGG
2009829 GGGATTATTGTAATTTTACTAAATAGTAGTTATAAATTCATAACCATCTAATAATCATCTTGGAT
456 GGGATTATTGTAATTTTACTAAATAGTAGTTATAAATTCATAACCATCTAATAATCATCTTGGAT
2009894 AAAAAGGTATATAGACATCATCTTTTATATGAAAATATGCATTTGGATGAAATGATACATAGTTG
521 AAAAAGGTATATAGACATCATCTTTTATATGAAAATATGCATTTGGATGAAATGATACATAGTTG
2009959 GATGAAAGAATGCATTTTTTGGATGAAAAGATATAATTTTTATAATCAAAAGTTATCATAATTTA
586 GATGAAAGAATGCATTTTTTGGATGAAAAGATATAATTTTTATAATCAAAAGTTATCATAATTTA
2010024 TGAAAAGACTAATCAATTGGGACATGTATTTTTTATTATATCTTTTGGGAACCTATAAATACTAA
651 TGAAAAGACTAATCAATTGGGACATGTATTTTTTATTATATCTTTTGGGAACCTATAAATACTAA
2010089 CTTTAATTGTCAAAATTTTTATTCAAAATCATTTCCAAAAAAATTAGAGTTTACTAAAAAAAAAG
716 CTTTAATTGTCAAAATTTTTATTCAAAATCATTTCCAAAAAAATTAGAGTTTACTAAAAAAAAAG
2010154 AGATTAGAGAGTTTTTCAATATTGCTAGTTATAAAACTTATAAAGGCTTTATTGTATCCTAGGAG
781 AGATTAGAGAGTTTTTCAATATTGCTAGTTATAAAACTTATAAAGGCTTTATTGTATCCTAGGAG
2010219 TATTATTATCTTGACCCGTTAACAAACTTTGTATGAAAACAAATAACTTTATAAAGAAAGTGATT
846 TATTATTATCTTGACCCGTTAACAAACTTTGTATGAAAACAAATAACTTTATAAAGAAAGTGATT
2010284 CATCGCGCTTCGAAATCTTGA
911 CATCGCGCTTCGAAATCTTGA
2010305 TTCCATTTTT
Statistics
Matches: 929, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
950 929 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (950 bp):
ATTAGTTTTAAGGTTTAAAGAGTAATAATAAGTTACTTTAATGACTAGGCACTAAAAAATAGGAT
TCAGCAATAAATAGTTTAGGAGGATAAATTAAACTTTTAATAGATTGATAATTATATTGTCATAA
AGATTCTACCTATATGAATATAGAATTGGTGCCACTTTTAACAAGAGTTTAAGGGTTTTACTCTT
ATAAATATTTATGAAACCAGAATCAGCACATGGCCATAATAGTGCTAAAGCAATAGAAAAACTTT
TATTCTTTTCTTTTAATATAGTTATGTGTGATTTATTCAGTTTTAACTCAAAAGTAATGGTTTAA
ACGACTAGTCACCTATTACTTTATTGAAACTTTGATAAGTATATACTAATGGAAGGTTTAAATCT
AGTAATACATTTCCTTTAGGTATAACTATATAGTTTATAATATTTTAGAATTTGTAATCGAGTGG
GGGATTATTGTAATTTTACTAAATAGTAGTTATAAATTCATAACCATCTAATAATCATCTTGGAT
AAAAAGGTATATAGACATCATCTTTTATATGAAAATATGCATTTGGATGAAATGATACATAGTTG
GATGAAAGAATGCATTTTTTGGATGAAAAGATATAATTTTTATAATCAAAAGTTATCATAATTTA
TGAAAAGACTAATCAATTGGGACATGTATTTTTTATTATATCTTTTGGGAACCTATAAATACTAA
CTTTAATTGTCAAAATTTTTATTCAAAATCATTTCCAAAAAAATTAGAGTTTACTAAAAAAAAAG
AGATTAGAGAGTTTTTCAATATTGCTAGTTATAAAACTTATAAAGGCTTTATTGTATCCTAGGAG
TATTATTATCTTGACCCGTTAACAAACTTTGTATGAAAACAAATAACTTTATAAAGAAAGTGATT
CATCGCGCTTCGAAATCTTGACCCGTTAACTAACTTTTCA
Found at i:2011810 original size:37 final size:33
Alignment explanation
Indices: 2011740--2011818 Score: 77
Period size: 34 Copynumber: 2.2 Consensus size: 33
2011730 TTGAAATGAA
* * *
2011740 TAATTATTGATTAAATTAATCAAAAATTTAATTT
1 TAATAATTAATTAAATTAATCAAAAA-TTAAATT
*
2011774 TAATAATTAATTAAATTGAATTATAAAATATAAATT
1 TAATAATTAATTAAATT-AATCA-AAAAT-TAAATT
2011810 TAATCAATT
1 TAAT-AATT
2011819 TTTTTGGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 15 0.41
35 5 0.14
36 13 0.35
37 4 0.11
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (33 bp):
TAATAATTAATTAAATTAATCAAAAATTAAATT
Found at i:2012524 original size:15 final size:16
Alignment explanation
Indices: 2012500--2012537 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
2012490 AAAGTTAAAA
2012500 TTAT-ATTTTAAAATT
1 TTATAATTTTAAAATT
*
2012515 TTA-AATTTTAAATTT
1 TTATAATTTTAAAATT
2012530 TTATAATT
1 TTATAATT
2012538 CAAATAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATAATTTTAAAATT
Found at i:2016337 original size:21 final size:21
Alignment explanation
Indices: 2016313--2016362 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
2016303 CACTTTCAAG
2016313 GAAAAATGTTGTAAAATTCAT
1 GAAAAATGTTGTAAAATTCAT
2016334 GAAAAATGTTGTAAAATTCAT
1 GAAAAATGTTGTAAAATTCAT
2016355 GAAAAATG
1 GAAAAATG
2016363 GTTTAGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.50, C:0.04, G:0.16, T:0.30
Consensus pattern (21 bp):
GAAAAATGTTGTAAAATTCAT
Found at i:2018804 original size:30 final size:28
Alignment explanation
Indices: 2018753--2018838 Score: 102
Period size: 30 Copynumber: 3.0 Consensus size: 28
2018743 ATCAGCTAGT
2018753 ATGGGTTTTAAAAGG-TGCCACTAACTC
1 ATGGGTTTTAAAAGGATGCCACTAACTC
2018780 ATGGGTTTTAAAAAGGTATGCCACTAACTC
1 ATGGGTTTT-AAAAGG-ATGCCACTAACTC
* * *
2018810 GTGGGCTTTGAAAGGGGATGCCACTAACT
1 ATGGG-TTTTAAA-AGGATGCCACTAACT
2018839 TGTGGGCTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
27 9 0.18
28 6 0.12
30 31 0.61
31 5 0.10
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (28 bp):
ATGGGTTTTAAAAGGATGCCACTAACTC
Found at i:2018844 original size:30 final size:30
Alignment explanation
Indices: 2018768--2018849 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
2018758 TTTTAAAAGG
* * * *
2018768 TGCCACTAACTCATGGGTTTTAAAAAGGTA
1 TGCCACTAACTCGTGGGCTTTGAAAAGGGA
*
2018798 TGCCACTAACTCGTGGGCTTTGAAAGGGGA
1 TGCCACTAACTCGTGGGCTTTGAAAAGGGA
*
2018828 TGCCACTAACTTGTGGGCTTTG
1 TGCCACTAACTCGTGGGCTTTG
2018850 GTTATTTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (30 bp):
TGCCACTAACTCGTGGGCTTTGAAAAGGGA
Found at i:2019985 original size:20 final size:20
Alignment explanation
Indices: 2019962--2020020 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
2019952 GTTTTCTAAT
*
2019962 TTTTTTCTCTATTTTCTTCC
1 TTTTTTCTCTCTTTTCTTCC
* *
2019982 TTTTTTCTTTCTTTTCTTTC
1 TTTTTTCTCTCTTTTCTTCC
*
2020002 TTTCTTTTTCTCTTTTCTT
1 TTT-TTTCTCTCTTTTCTT
2020021 TTTTAGCTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 20 0.61
21 13 0.39
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTCTCTCTTTTCTTCC
Found at i:2020003 original size:13 final size:12
Alignment explanation
Indices: 2019973--2020024 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
2019963 TTTTTCTCTA
*
2019973 TTTTC-TTCCTT
1 TTTTCTTTCTTT
2019984 TTTTCTTTCTTT
1 TTTTCTTTCTTT
2019996 TCTTTCTTTCTTT
1 T-TTTCTTTCTTT
*
2020009 TTCTCTTTTCTTT
1 TTTTC-TTTCTTT
2020022 TTT
1 TTT
2020025 AGCTGATCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.14
12 9 0.26
13 21 0.60
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:2020021 original size:21 final size:20
Alignment explanation
Indices: 2019961--2020021 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
2019951 AGTTTTCTAA
* *
2019961 TTTTTTTCTCTATTTTCTTCC
1 TTTTTTT-TCTCTTTTCTTTC
2019982 TTTTTTCTT-TCTTTTCTTTC
1 TTTTTT-TTCTCTTTTCTTTC
2020002 TTTCTTTTTCTCTTTTCTTT
1 TTT-TTTTTCTCTTTTCTTT
2020022 TTTAGCTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 14 0.40
21 20 0.57
22 1 0.03
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCTCTTTTCTTTC
Found at i:2020821 original size:166 final size:166
Alignment explanation
Indices: 2020622--2021058 Score: 546
Period size: 166 Copynumber: 2.7 Consensus size: 166
2020612 GATTTTTTAG
* * * * *
2020622 AAATAGAAAAATTTTAAGAAAAAAATAAAAAACTAATGAAAATGAATGAATTTTTGAAAAT-TGA
1 AAATAAAAAAATTTCAAGGAAAAAA-AAAAAACTCATGAAGATGAATGAATTTTTGAAAATCTGA
** *
2020686 TTTAATATGAAATAAATAATAATATTTTTTGAATTTTAAAAATTAAAATCCAAGAAAAATCCCTC
65 TTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCC-C
* * * *
2020751 C-AAAAACATTTATGGAGTAGAAAACTTTATATTTCAA
129 CTAAAAACATTTACGAAGTAGAAAACTTCAAATTTCAA
* *
2020788 AAATAAAAAAATTTCAAGGAAAAAAAGAAAAACTCATGAAGATGAATG-AGTTTTCAAAATCTGA
1 AAATAAAAAAATTTCAAGGAAAAAAA-AAAAACTCATGAAGATGAATGAATTTTTGAAAATCTGA
* *
2020852 TTTAATATGAAATAAATAATAATATTTGATAAATTTTTAAAATTAAAAACCAAGAAAAATCCCCC
65 TTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCC
** *
2020917 TAAAATTATTTACGAAGTAGAAAACTTCAAATTTCAG
130 TAAAAACATTTACGAAGTAGAAAACTTCAAATTTCAA
* * ** * *
2020954 AAAGAAGGAAAATTTCAAGG---AAAAAAAAACTCATGAAGATGGGTGAATTTTTG-AACTCTAA
1 AAATAA-AAAAATTTCAAGGAAAAAAAAAAAACTCATGAAGATGAATGAATTTTTGAAAATCTGA
* *
2021015 TTTAATATAAAATAAATAATAATATTTGATGAATTTTCAAAATT
65 TTTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATT
2021059 TTAAACCCAT
Statistics
Matches: 236, Mismatches: 30, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
163 66 0.28
164 9 0.04
165 13 0.06
166 136 0.58
167 12 0.05
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (166 bp):
AAATAAAAAAATTTCAAGGAAAAAAAAAAAACTCATGAAGATGAATGAATTTTTGAAAATCTGAT
TTAATATGAAATAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCT
AAAAACATTTACGAAGTAGAAAACTTCAAATTTCAA
Found at i:2022338 original size:84 final size:84
Alignment explanation
Indices: 2022239--2022447 Score: 215
Period size: 84 Copynumber: 2.5 Consensus size: 84
2022229 AATCAATAAA
** * * * * *
2022239 TCAACAAAGAATAAAGAAATTTACTTGGGACTAAGTCGATAAGTAAATAAGGAATGAAAA-GTTG
1 TCAACAAAGGGTAAAGGAGTTTACTAGGGACTAAGTCGACAAGTAAACAAGGAAT-AAAAGGTTG
** * *
2022303 ACTGAGGCTGAACCGACAAG
65 ACCAAGACTAAACCGACAAG
* * *
2022323 TCAACAAAGGGTAAAGGAGTTTA-TCAGGGACTAAGTCGACAGGTAAACCAGGGATAAAAGGTTG
1 TCAACAAAGGGTAAAGGAGTTTACT-AGGGACTAAGTCGACAAGTAAACAAGGAATAAAAGGTTG
* *
2022387 ACCAAGACTAAACTGATAAG
65 ACCAAGACTAAACCGACAAG
* * *
2022407 TTAACAAAGGGTAAAGGAGTTCACTAGGGACTAAGCCGACA
1 TCAACAAAGGGTAAAGGAGTTTACTAGGGACTAAGTCGACA
2022448 GGCAAATGAG
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
83 5 0.05
84 97 0.94
85 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.19
Consensus pattern (84 bp):
TCAACAAAGGGTAAAGGAGTTTACTAGGGACTAAGTCGACAAGTAAACAAGGAATAAAAGGTTGA
CCAAGACTAAACCGACAAG
Found at i:2022642 original size:44 final size:44
Alignment explanation
Indices: 2022544--2022924 Score: 212
Period size: 44 Copynumber: 8.7 Consensus size: 44
2022534 TCATTCGACC
* * * *
2022544 AGGGTAGTAACCATACGTCAAA-CAGAAAGGTGG-CAG-ATTTGACC
1 AGGGTGGTAACCATACGTCAAATCAG-AA--TGGAAAGAATCTGACT
* * * *
2022588 AGGGTAGTAACCATACGTTAAATAAGAATGGAAAGAATCTGATT
1 AGGGTGGTAACCATACGTCAAATCAGAATGGAAAGAATCTGACT
* * * * * * *
2022632 AGGATGGTAACCATACGTCAGA-CCGAAATGAGAAA-CATTTAACC
1 AGGGTGGTAACCATACGTCAAATCAG-AATG-GAAAGAATCTGACT
* * ** * * *
2022676 AAGGTGGTAACCATACGTCAAAT-AGAAAGGAGGTGGAT-TTAGCC
1 AGGGTGGTAACCATACGTCAAATCAGAATGGA-AAGAATCTGA-CT
* * * * *
2022720 AGGGTGGTAGCTATACGTTAAATCAGAATGAAAAGAATCTGATT
1 AGGGTGGTAACCATACGTCAAATCAGAATGGAAAGAATCTGACT
** * * *
2022764 AGGGTGGTAACCATACGTCAAA-CAGAATGGAGGTGGATTTAACT
1 AGGGTGGTAACCATACGTCAAATCAGAATGGA-AAGAATCTGACT
* * *
2022808 AGGGTGGTAACCATACGTTAAATCAGAATGAAAAAAATCTGACT
1 AGGGTGGTAACCATACGTCAAATCAGAATGGAAAGAATCTGACT
* * * *
2022852 AGGGTGGTAACCATACATCAGA-CCGAAATGGGAAACG--TTTGA-T
1 AGGGTGGTAACCATACGTCAAATCAG-AAT-GGAAA-GAATCTGACT
2022895 CAGGGTGGTAACCATACGTCAAA-CAGAATG
1 -AGGGTGGTAACCATACGTCAAATCAGAATG
2022925 AAAAAAAAAA
Statistics
Matches: 254, Mismatches: 66, Indels: 36
0.71 0.19 0.10
Matches are distributed among these distances:
42 6 0.02
43 22 0.09
44 200 0.79
45 26 0.10
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (44 bp):
AGGGTGGTAACCATACGTCAAATCAGAATGGAAAGAATCTGACT
Found at i:2022728 original size:88 final size:88
Alignment explanation
Indices: 2022636--2022928 Score: 254
Period size: 88 Copynumber: 3.3 Consensus size: 88
2022626 CTGATTAGGA
* * * *
2022636 TGGTAACCATACGTCAGACC-GAAATGAGAAA-CATTTAACCAAGGTGGTAACCATACGTCAAAT
1 TGGTAACCATACGTCAAACCAG-AATGA-AAAGAATCTAACCAAGGTGGTAACCATACGTCAAAC
*
2022699 AGAAAGGAGGTGGATTTAGCCAGGG
64 AGAAAGGAGGTGGATTTAACCAGGG
* * * * * ** *
2022724 TGGTAGCTATACGTTAAATCAGAATGAAAAGAATCTGATTAGGGTGGTAACCATACGTCAAACAG
1 TGGTAACCATACGTCAAACCAGAATGAAAAGAATCTAACCAAGGTGGTAACCATACGTCAAACAG
* *
2022789 AATGGAGGTGGATTTAACTAGGG
66 AAAGGAGGTGGATTTAACCAGGG
* * * * * * * * *
2022812 TGGTAACCATACGTTAAATCAGAATGAAAAAAATCTGACTAGGGTGGTAACCATACATCAGACCG
1 TGGTAACCATACGTCAAACCAGAATGAAAAGAATCTAACCAAGGTGGTAACCATACGTCAAACAG
* ** * *
2022877 AAATG-GG-AAACGTTTGATCAGGG
66 AAAGGAGGTGGA--TTTAACCAGGG
2022900 TGGTAACCATACGTCAAA-CAGAATGAAAA
1 TGGTAACCATACGTCAAACCAGAATGAAAA
2022929 AAAAAACTTG
Statistics
Matches: 171, Mismatches: 30, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
86 1 0.01
87 16 0.09
88 153 0.89
89 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (88 bp):
TGGTAACCATACGTCAAACCAGAATGAAAAGAATCTAACCAAGGTGGTAACCATACGTCAAACAG
AAAGGAGGTGGATTTAACCAGGG
Found at i:2022804 original size:132 final size:132
Alignment explanation
Indices: 2022541--2022835 Score: 369
Period size: 132 Copynumber: 2.2 Consensus size: 132
2022531 AAATCATTCG
* * *
2022541 ACCAGGGTAGTAACCATACGTCAAACAGAAAGGTGGCAGATTTGACCAGGGTAGTAACCATACGT
1 ACCAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCAGATTTGACCAGGGTAGTAACCATACGT
* * *
2022606 TAAATAAGAATGGAAAGAATCTGATTAGGATGGTAACCATACGTCAGACCGAAATGAGAAACATT
66 TAAATAAGAATGAAAAGAATCTGATTAGGATGGTAACCATACGTCAAACAGAAATGAGAAACATT
2022671 TA
131 TA
* ** * * *
2022673 ACCAAGGTGGTAACCATACGTCAAATAGAAAGGAGGTGGATTT-AGCCAGGGTGGTAGCTATACG
1 ACCAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCAGATTTGA-CCAGGGTAGTAACCATACG
* * ****
2022737 TTAAATCAGAATGAAAAGAATCTGATTAGGGTGGTAACCATACGTCAAACAG-AATGGAGGTGGA
65 TTAAATAAGAATGAAAAGAATCTGATTAGGATGGTAACCATACGTCAAACAGAAAT-GAGAAACA
2022801 TTTA
129 TTTA
* *
2022805 ACTAGGGTGGTAACCATACGTTAAATCAGAA
1 ACCAGGGTGGTAACCATACGTCAAAT-AGAA
2022836 TGAAAAAAAT
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
131 4 0.03
132 131 0.94
133 4 0.03
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (132 bp):
ACCAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCAGATTTGACCAGGGTAGTAACCATACGT
TAAATAAGAATGAAAAGAATCTGATTAGGATGGTAACCATACGTCAAACAGAAATGAGAAACATT
TA
Found at i:2022932 original size:88 final size:87
Alignment explanation
Indices: 2022678--2022931 Score: 271
Period size: 88 Copynumber: 2.9 Consensus size: 87
2022668 ATTTAACCAA
* * * *** * * *
2022678 GGTGGTAACCATACGTCAAATAGAAAGGAGGTGGATTTAGCCAGGGTGGTAGCTATACGTTAAAT
1 GGTGGTAACCATACATCAAACAGAATGGAGAACGATTTA-ACAGGGTGGTAACCATACGTTAAAT
* *
2022743 CAGAATGAAAAGAATCTGATTAG
65 CAGAATGAAAAAAATCTGACTAG
* ***
2022766 GGTGGTAACCATACGTCAAACAGAATGGAGGTGGATTTAACTAGGGTGGTAACCATACGTTAAAT
1 GGTGGTAACCATACATCAAACAGAATGGAGAACGATTTAAC-AGGGTGGTAACCATACGTTAAAT
2022831 CAGAATGAAAAAAATCTGACTAG
65 CAGAATGAAAAAAATCTGACTAG
* * * *
2022854 GGTGGTAACCATACATCAGACCGAAATGG-GAAACG-TTTGATCAGGGTGGTAACCATACGTCAA
1 GGTGGTAACCATACATCAAACAG-AATGGAG-AACGATTT-AACAGGGTGGTAACCATACGTTAA
2022917 A-CAGAATGAAAAAAA
63 ATCAGAATGAAAAAAA
2022932 AAACTTGCTT
Statistics
Matches: 147, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
87 15 0.10
88 124 0.84
89 8 0.05
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (87 bp):
GGTGGTAACCATACATCAAACAGAATGGAGAACGATTTAACAGGGTGGTAACCATACGTTAAATC
AGAATGAAAAAAATCTGACTAG
Found at i:2023259 original size:17 final size:18
Alignment explanation
Indices: 2023237--2023270 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2023227 TATTATTATC
2023237 ATTATTATTT-ATTTTTT
1 ATTATTATTTCATTTTTT
*
2023254 ATTATTTTTTCATTTTT
1 ATTATTATTTCATTTTT
2023271 ATGATGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTATTATTTCATTTTTT
Found at i:2029817 original size:79 final size:77
Alignment explanation
Indices: 2029735--2030459 Score: 512
Period size: 79 Copynumber: 9.2 Consensus size: 77
2029725 AACAAAATCG
* * * * ***
2029735 GGGTTGGAGTATCCCCTCAAAAATAATGGGCTTGAAGTATCCTCGATGGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAAAGGG-TTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
*
2029800 TAGAAATAAAGCTG
65 TAGAAATAAA-CTA
* * *
2029814 GGGTTGGAGTATCCCCTTGAAAATAATAGGGTTGGAGTATCTCCGATTGTGAAAAATCAATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
*
2029879 T-GAAAATAAAACCA
65 TAG-AAAT-AAACTA
* * * *
2029893 GGGTTGGAGTATCCCCTCAGAAACA-ACAGGGTTAGAGTATCCCCGGTGGT-ATAAAATCAGTGT
1 GGGTTGGAGTATCCCCTC-GAAA-ATAAAGGGTTGGAGTATCCCCGATGGTGA-AAAATCAATGT
* *
2029956 TTTAGAAATAAAATCG
63 TTTAGAAATAAACT-A
* * * * * **
2029972 GGGTTGGACTATCCCCTTGAAAATAACAGGGTTGTAGTATCCCCGATTGTAAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
* *
2030037 TGGAAATAAAATCA
65 TAGAAATAAACT-A
* * * * * * * *
2030051 GGGTTGGAGTATCCCCTTGGAAACAACGGGGTTGGAGTATCCCTGAAGGTGAAAAATCAACGTTC
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
2030116 TAGAAATAAAACTA
65 TAGAAAT-AAACTA
* * * * ** * * * *
2030130 GGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGCGTATCTCAAATTGTGGAAAATTAGTGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
* *
2030195 TGGAAATGAAACCA
65 TAGAAAT-AAACTA
* *** * * * *
2030209 AGACCGGAGTATCCCTTCGAAAACAACAGGGTTGGAGTATCCCCGATGGTAAAAAATCGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTT
*
2030274 TAGAAAGAAAAC-A
65 TAGAAA-TAAACTA
* * * * * *
2030287 GGGGTTGGAGTATCCGCTCG-AAATAGCAA-GGTTAG-GTATCCCCGATTGTGGAATATCAGTGT
1 -GGGTTGGAGTATCCCCTCGAAAATA--AAGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGT
* *
2030349 TTTGGAAATAAAATCA
63 TTTAGAAATAAACT-A
* * * * * * * *
2030365 GAGTTGGAGTATCTCTTCGAAAATAATGGGGTTGGAGTATCTCCAATGG-CAGAAAATCGATGTT
1 GGGTTGGAGTATCCCCTCGAAAATAA-AGGGTTGGAGTATCCCCGATGGTGA-AAAATCAATGTT
*
2030429 TTAGAAATAAAACTG
64 TTAGAAAT-AAACTA
*
2030444 GGGTTGAAGTATCCCC
1 GGGTTGGAGTATCCCC
2030460 GATGGTGGAA
Statistics
Matches: 499, Mismatches: 123, Indels: 48
0.74 0.18 0.07
Matches are distributed among these distances:
76 4 0.01
77 44 0.09
78 31 0.06
79 397 0.80
80 22 0.04
81 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCTCGAAAATAAAGGGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTT
AGAAATAAACTA
Found at i:2029992 original size:158 final size:158
Alignment explanation
Indices: 2029676--2030459 Score: 730
Period size: 158 Copynumber: 5.0 Consensus size: 158
2029666 ATATTTTGGA
* * * * * * * * * *
2029676 GAAAAAAACAGGGTTGGAGAAT-CCCTA-GGTGAAAAGTCGATATTTTGGAAACAAAATCGGGGT
1 GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGT
* * * * * **
2029739 TGGAGTATCCCCTCAAAAATAA-TGGGCTTGAAGTATCCTCGATGGTGAAAAATTGGTGTTTTAG
66 TGGAGTATCCCCTCAGAAACAACAGGG-TTGGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAG
*
2029803 AAATAAAGCTGGGGTTGGAGTATCCCCTT
130 AAATAAAACTGGGGTTGGAGTATCCCCTT
* * *
2029832 GAAAATAATAGGGTTGGAGTATCTCCGATTGTGAAAAATCAATGTTTTGAAAATAAAACCAGGGT
1 GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGT
* *
2029897 TGGAGTATCCCCTCAGAAACAACAGGGTTAGAGTATCCCCGGTGGT-ATAAAATCAGTGTTTTAG
66 TGGAGTATCCCCTCAGAAACAACAGGGTTGGAGTATCCCCGATGGTGA-AAAATCAGTGTTTTAG
*
2029961 AAATAAAA-TCGGGGTTGGACTATCCCCTT
130 AAATAAAACT-GGGGTTGGAGTATCCCCTT
* * ** *
2029990 GAAAATAACAGGGTTGTAGTATCCCCGATTGTAAAAAATTGATGTTTTGGAAATAAAATCAGGGT
1 GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGT
** * * * ** *
2030055 TGGAGTATCCCCTTGGAAACAACGGGGTTGGAGTATCCCTGAAGGTGAAAAATCAACGTTCTAGA
66 TGGAGTATCCCCTCAGAAACAACAGGGTTGGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAGA
*
2030120 AATAAAACTAGGGTTGGAGTAT-CCCTT
131 AATAAAACTGGGGTTGGAGTATCCCCTT
* * * ** * * * * * *
2030147 CGAAAATAACGGGGTTGGCGTATCTCAAATTGTGGAAAATTAGTGTTTTGGAAATGAAACCAAGA
1 -GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGG
** * *
2030212 CCGGAGTATCCCTTC-GAAAACAACAGGGTTGGAGTATCCCCGATGGTAAAAAATC-GATGTTTT
65 TTGGAGTATCCCCTCAG-AAACAACAGGGTTGGAGTATCCCCGATGGTGAAAAATCAG-TGTTTT
* * * *
2030275 AGAAAGAAAACAGGGGTTGGAGTATCCGCTC
128 AGAAATAAAACTGGGGTTGGAGTATCCCCTT
* * * * * * * *
2030306 G-AAATAGCAAGGTTAG-GTATCCCCGATTGTGGAATATCAGTGTTTTGGAAATAAAATCAGAGT
1 GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGT
* * * ** * * *
2030369 TGGAGTATCTCTTC-GAAAATAATGGGGTTGGAGTATCTCCAATGG-CAGAAAATC-GATGTTTT
66 TGGAGTATCCCCTCAG-AAACAACAGGGTTGGAGTATCCCCGATGGTGA-AAAATCAG-TGTTTT
*
2030431 AGAAATAAAACTGGGGTTGAAGTATCCCC
128 AGAAATAAAACTGGGGTTGGAGTATCCCC
2030460 GATGGTGGAA
Statistics
Matches: 515, Mismatches: 101, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
155 1 0.00
156 132 0.26
157 22 0.04
158 352 0.68
159 8 0.02
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (158 bp):
GAAAATAACAGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTTGGAAATAAAACCAGGGT
TGGAGTATCCCCTCAGAAACAACAGGGTTGGAGTATCCCCGATGGTGAAAAATCAGTGTTTTAGA
AATAAAACTGGGGTTGGAGTATCCCCTT
Found at i:2030143 original size:237 final size:236
Alignment explanation
Indices: 2029718--2030459 Score: 658
Period size: 237 Copynumber: 3.1 Consensus size: 236
2029708 AAAGTCGATA
* ** * *
2029718 TTTTGGAAACAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA-TGGGCTTGAAGTATCCTCGAT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTTGAAAATAACAGGG-TTGAAGTATCCCCGAT
* * * * * *
2029782 GGTGAAAAATTGGTGTTTTAGAAATAAAGCTGGGGTTGGAGTATCCCCTTGAAAATAATAGGGTT
65 GGTAAAAAATTGATGTTTTAGAAATAAAAC-AGGGTTGGAGTATCCCCTTGAAAACAACAGGGTT
** * *
2029847 GGAGTATCTCCGATTGTGAAAAATCAATGTTTTGAAAATAAAACCAGGGTTGGAGTATCCCCTC-
129 GGAGTATCTCCGAAGGTGAAAAATCAACGTTTAGAAAATAAAACCAGGGTTGGAGTATCCCCTCG
*** *
2029911 AGAAACAACAGGGTTAGAGTATCCCCGGTGGTATAAAATCAGTG
194 A-AAACAACAGGGTTAGAGTATCCCAAATGGTAGAAAATCAGTG
* * * *
2029955 TTTTAGAAATAAAATCGGGGTTGGACTATCCCCTTGAAAATAACAGGGTTGTAGTATCCCCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTTGAAAATAACAGGGTTGAAGTATCCCCGATG
* * *
2030020 GTAAAAAATTGATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTTGGAAACAACGGGGTTG
66 GTAAAAAATTGATGTTTTAGAAATAAAA-CAGGGTTGGAGTATCCCCTTGAAAACAACAGGGTTG
* *
2030085 GAGTATC-CCTGAAGGTGAAAAATCAACGTTCTAG-AAATAAAACTAGGGTTGGAGTATCCCTTC
130 GAGTATCTCC-GAAGGTGAAAAATCAACGTT-TAGAAAATAAAACCAGGGTTGGAGTATCCCCTC
* * * * * * * *
2030148 GAAAATAACGGGGTTGGCGTATCTCAAATTGTGGAAAATTAGTG
193 GAAAACAACAGGGTTAGAGTATCCCAAATGGTAGAAAATCAGTG
* * ** *** * *
2030192 TTTTGGAAATGAAACCAAGACCGGAGTAT-CCCTTCGAAAACAACAGGGTTGGAGTATCCCCGAT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTT-GAAAATAACAGGGTTGAAGTATCCCCGAT
* * * * * * *
2030256 GGTAAAAAATCGATGTTTTAGAAAGAAAACAGGGGTTGGAGTATCCGCTCG-AAATAGCAAGGTT
65 GGTAAAAAATTGATGTTTTAGAAATAAAACA-GGGTTGGAGTATCCCCTTGAAAACAACAGGGTT
* * ** * * ** * * * * * *
2030320 AG-GTATCCCCGATTGTGGAATATCAGTGTTTTGGAAATAAAATCAGAGTTGGAGTATCTCTTCG
129 GGAGTATCTCCGAAGGTGAAAAATCAACGTTTAGAAAATAAAACCAGGGTTGGAGTATCCCCTCG
* ** * *
2030384 AAAATAATGGGGTTGGAGTATCTCC-AATGGCAGAAAATC-GATG
194 AAAACAACAGGGTTAGAGTATC-CCAAATGGTAGAAAATCAG-TG
* *
2030427 TTTTAGAAATAAAA-CTGGGGTTGAAGTATCCCC
1 TTTTGGAAATAAAATC-GGGGTTGGAGTATCCCC
2030460 GATGGTGGAA
Statistics
Matches: 408, Mismatches: 84, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
234 4 0.01
235 96 0.24
236 25 0.06
237 276 0.68
238 7 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (236 bp):
TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTTGAAAATAACAGGGTTGAAGTATCCCCGATG
GTAAAAAATTGATGTTTTAGAAATAAAACAGGGTTGGAGTATCCCCTTGAAAACAACAGGGTTGG
AGTATCTCCGAAGGTGAAAAATCAACGTTTAGAAAATAAAACCAGGGTTGGAGTATCCCCTCGAA
AACAACAGGGTTAGAGTATCCCAAATGGTAGAAAATCAGTG
Found at i:2030471 original size:51 final size:51
Alignment explanation
Indices: 2030391--2030491 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
2030381 TCGAAAATAA
* *
2030391 TGGGGTTGGAGTATCTCCAATGGCAGAAAATCGATGTTTTAGAAATAAAAC
1 TGGGGTTGAAGTATCCCCAATGGCAGAAAATCGATGTTTTAGAAATAAAAC
* ** *
2030442 TGGGGTTGAAGTATCCCCGATGGTGGAAAATCGATTTTTTAGAAATAAAA
1 TGGGGTTGAAGTATCCCCAATGGCAGAAAATCGATGTTTTAGAAATAAAA
2030492 ACATGAATGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.29
Consensus pattern (51 bp):
TGGGGTTGAAGTATCCCCAATGGCAGAAAATCGATGTTTTAGAAATAAAAC
Found at i:2033553 original size:61 final size:60
Alignment explanation
Indices: 2033472--2033913 Score: 397
Period size: 61 Copynumber: 7.3 Consensus size: 60
2033462 AGTCACCTTG
** * * *
2033472 CTCTTTGAGGACTAGGAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGGAAAAACGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GGAAAAGCGTCCTA
* * *
2033533 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGG-AAAGTGTCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTA
* * ** * * * * *
2033592 ATTTTTGACTACTGAAAGGTGCCACCAACTTATATGGGCTTTAAAA-GAAGAAGGTGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AA-GCGTCCTA
* * * * * * *
2033653 CTCTTTAAGGACTGAAAGTTGACACCAACTTGTGTGGGCTTTAAAATGAGAAGGCATCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCGTCCTA
* * * *
2033714 CTCTTTGGGGACTGAAAA-GTGCCACCAACTTATATGGGCTTTAAAA-AAAGAAGTCGTCCTA
1 CTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAG-CGTCCTA
* * * *
2033775 CTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCGTCCTA
* * ** * * * * * *
2033836 CTTTTTAAAAACTGAAAGATGCCACCAACTTATGTGGGCTTTAAATGGAGAAGGCATCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCGTCCTA
2033897 CTCTTTGAGGACTAAAA
1 CTCTTTGAGGACTAAAA
2033914 AGATAAAAGG
Statistics
Matches: 306, Mismatches: 64, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
58 1 0.00
59 47 0.15
60 11 0.04
61 236 0.77
62 9 0.03
63 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (60 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCGTCCTA
Found at i:2033852 original size:183 final size:180
Alignment explanation
Indices: 2033494--2033913 Score: 504
Period size: 183 Copynumber: 2.3 Consensus size: 180
2033484 TAGGAGGTGC
* * ** * *
2033494 CACCAGCTTGTGTGGGCTTTAAAA-GGGAAAAACGTCCTGCTCTTTGAGGACTAAAAGGTGCCAC
1 CACCAACTTGTGTGGGCTTTAAAATGAG-AAGGCATCCTACTCTTTGAGGACTAAAA-GTGCCAC
* * * ** * * * *
2033558 CAACTTGTGTAGGCTTTGAAAGGAAAGTGTCCTAATTTTTGACTACTGAAAGGTGCCACCAACTT
64 CAACTTATATAGGCTTTAAAAAAAAAGTGTCCTAATCTTTGACGACTAAAAAGTGCCACCAACTT
* ** *
2033623 ATATGGGCTTTAAAAGAAGAAGGTGTCCTGCTCTTTAAGGACTGAAAGTTGA
129 ATATGGGCTTTAAAAGAAGAAGGCGTCCTGCTCTTTAAAAACTGAAAGATGA
*
2033675 CACCAACTTGTGTGGGCTTTAAAATGAGAAGGCATCCTACTCTTTGGGGACTGAAAAGTGCCACC
1 CACCAACTTGTGTGGGCTTTAAAATGAGAAGGCATCCTACTCTTTGAGGACT-AAAAGTGCCACC
* * *
2033740 AACTTATATGGGCTTTAAAAAAAGAAGTCGTCCTACTCTTTGAGGACTAAAAAGTGCCACCAACT
65 AACTTATATAGGCTTTAAAAAAA-AAGT-GTCCTAATCTTTGACGACTAAAAAGTGCCACCAACT
* * * *
2033805 TGTGTGGGCTTTAAAA-AGAGAAGGCGTCCTGCTTTTTAAAAACTGAAAGATGC
128 TATATGGGCTTTAAAAGA-AGAAGGCGTCCTGCTCTTTAAAAACTGAAAGATGA
*
2033858 CACCAACTTATGTGGGCTTT-AAATGGAGAAGGCATCCTACTCTTTGAGGACTAAAA
1 CACCAACTTGTGTGGGCTTTAAAAT-GAGAAGGCATCCTACTCTTTGAGGACTAAAA
2033914 AGATAAAAGG
Statistics
Matches: 204, Mismatches: 29, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
181 67 0.33
182 19 0.09
183 118 0.58
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (180 bp):
CACCAACTTGTGTGGGCTTTAAAATGAGAAGGCATCCTACTCTTTGAGGACTAAAAGTGCCACCA
ACTTATATAGGCTTTAAAAAAAAAGTGTCCTAATCTTTGACGACTAAAAAGTGCCACCAACTTAT
ATGGGCTTTAAAAGAAGAAGGCGTCCTGCTCTTTAAAAACTGAAAGATGA
Found at i:2033914 original size:122 final size:122
Alignment explanation
Indices: 2033491--2033915 Score: 475
Period size: 122 Copynumber: 3.5 Consensus size: 122
2033481 GACTAGGAGG
* * * * * *
2033491 TGCCACCAGCTTGTGTGGGCTTTAAAAGGGAA-AA-ACGTCCTGCTCTTTGAGGACTAAAAGGTG
1 TGCCACCAACTTATATGGGCTTTAAAA--GAAGAAGGCGTCCTACTCTTTGAGGACTAAAAAGTG
* * * * * ** *
2033554 CCACCAACTTGTGTAGGCTTT-GAAAG-GAAAGTGTCCTAATTTTTGACTACTGAAAGG
64 CCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTACTTTTTGAAAACTGAAAGA
* * * * *
2033611 TGCCACCAACTTATATGGGCTTTAAAAGAAGAAGGTGTCCTGCTCTTTAAGGACT-GAAAGTTGA
1 TGCCACCAACTTATATGGGCTTTAAAAGAAGAAGGCGTCCTACTCTTTGAGGACTAAAAAG-TGC
* * * ***
2033675 CACCAACTTGTGTGGGCTTTAAAATGAGAAGGCATCCTACTCTTTGGGGACTGAAA-A
65 CACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTACTTTTTGAAAACTGAAAGA
* *
2033732 GTGCCACCAACTTATATGGGCTTTAAAAAAAGAAGTCGTCCTACTCTTTGAGGACTAAAAAGTGC
1 -TGCCACCAACTTATATGGGCTTTAAAAGAAGAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGC
* *
2033797 CACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTGCTTTTTAAAAACTGAAAGA
65 CACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTACTTTTTGAAAACTGAAAGA
* * * *
2033855 TGCCACCAACTTATGTGGGCTTTAAATGGAGAAGGCATCCTACTCTTTGAGGACTAAAAAG
1 TGCCACCAACTTATATGGGCTTTAAAAGAAGAAGGCGTCCTACTCTTTGAGGACTAAAAAG
2033916 ATAAAAGGTT
Statistics
Matches: 255, Mismatches: 42, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
118 3 0.01
119 5 0.02
120 63 0.25
121 3 0.01
122 176 0.69
123 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (122 bp):
TGCCACCAACTTATATGGGCTTTAAAAGAAGAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGCC
ACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCGTCCTACTTTTTGAAAACTGAAAGA
Found at i:2034883 original size:1 final size:1
Alignment explanation
Indices: 2034867--2034928 Score: 52
Period size: 1 Copynumber: 62.0 Consensus size: 1
2034857 TAGCAGGTTC
* * * ** * * *
2034867 TTTTCTTTTTTCTTTTTTTCTTTTTTTTTGGTTTTTTTTTTGTTTTGTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2034929 GGAAAAAAAA
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.00, C:0.05, G:0.08, T:0.87
Consensus pattern (1 bp):
T
Found at i:2034889 original size:20 final size:20
Alignment explanation
Indices: 2034864--2034927 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
2034854 GCTTAGCAGG
2034864 TTCTTTTCTTTT-TTCTTTTT
1 TTCTTTTCTTTTGTT-TTTTT
*
2034884 TTCTTTTTTTTTGGTTTTTTTT
1 TTCTTTTCTTTT-G-TTTTTTT
* *
2034906 TTGTTTTGTTTTGTTTTTTT
1 TTCTTTTCTTTTGTTTTTTT
2034926 TT
1 TT
2034928 TGGAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
20 20 0.53
21 1 0.03
22 15 0.39
23 2 0.05
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (20 bp):
TTCTTTTCTTTTGTTTTTTT
Found at i:2034904 original size:22 final size:21
Alignment explanation
Indices: 2034864--2034928 Score: 78
Period size: 22 Copynumber: 3.1 Consensus size: 21
2034854 GCTTAGCAGG
* *
2034864 TTCTTTTCTTTT-TTCTTTTT
1 TTCTTTTGTTTTGTTTTTTTT
*
2034884 TTCTTTTTTTTTGGTTTTTTTT
1 TTCTTTTGTTTT-GTTTTTTTT
*
2034906 TTGTTTTGTTTTGTTTTTTTT
1 TTCTTTTGTTTTGTTTTTTTT
2034927 TT
1 TT
2034929 GGAAAAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
20 11 0.28
21 11 0.28
22 17 0.44
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (21 bp):
TTCTTTTGTTTTGTTTTTTTT
Found at i:2034929 original size:11 final size:11
Alignment explanation
Indices: 2034879--2034929 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
2034869 TTCTTTTTTC
*
2034879 TTTTTTTCTTT
1 TTTTTTTGTTT
*
2034890 TTTTTTGGTTT
1 TTTTTTTGTTT
2034901 TTTTTTTG-TT
1 TTTTTTTGTTT
*
2034911 TTGTTTTGTTT
1 TTTTTTTGTTT
2034922 TTTTTTTG
1 TTTTTTTG
2034930 GAAAAAAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:2041974 original size:23 final size:22
Alignment explanation
Indices: 2041938--2041986 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
2041928 GTAAAAAAGA
* **
2041938 AAAATAACAGACAAATTTACAT
1 AAAATAACACACAAAAGTACAT
2041960 AAAATAGACACACAAAAGTACAT
1 AAAATA-ACACACAAAAGTACAT
2041983 AAAA
1 AAAA
2041987 AGGAGAGACG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.63, C:0.14, G:0.06, T:0.16
Consensus pattern (22 bp):
AAAATAACACACAAAAGTACAT
Found at i:2042422 original size:79 final size:78
Alignment explanation
Indices: 2042209--2042488 Score: 267
Period size: 79 Copynumber: 3.5 Consensus size: 78
2042199 AAGTTTAATA
* * ** * ** *
2042209 TTTTGGAAATAAAATCGAGGTTGGAGTATCACCTAAAAAATAACAAGG-TCAGAGTATCTCCGAT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATC-CCTTGAAAATAAC-GGGATTGGAGTATCTTCGAT
* *
2042273 TGTGAAAAATCGGTG
64 TGTGAAAAATTGATG
** * * * *
2042288 TTTTAAAAATAAAATCGAGGTTGGAGTATCCCTTTGAAAATAATGGGGTTGGAGTATCTTCGATT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCCC-TTGAAAATAACGGGATTGGAGTATCTTCGATT
2042353 GTGAAAAATTGATG
65 GTGAAAAATTGATG
* * *
2042367 TTTTGGAACTAAAACCGGGGTTGGAGTATCCTCTTGAAAATAACGGGATTTGAGTATCCTCGATT
1 TTTTGGAAATAAAACCGGGGTTGGAGTATCC-CTTGAAAATAACGGGATTGGAGTATCTTCGATT
* *
2042432 ATGAAAAA-TCAGTG
65 GTGAAAAATTGA-TG
** * *
2042446 TTTTGGAAATAAAACAAGGGTTGAAGTATCCCCTTGGAAATAA
1 TTTTGGAAATAAAACCGGGGTTGGAGTAT-CCCTTGAAAATAA
2042489 AAACATAAAT
Statistics
Matches: 169, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
78 6 0.04
79 160 0.95
80 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (78 bp):
TTTTGGAAATAAAACCGGGGTTGGAGTATCCCTTGAAAATAACGGGATTGGAGTATCTTCGATTG
TGAAAAATTGATG
Found at i:2044900 original size:50 final size:50
Alignment explanation
Indices: 2044824--2045008 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 50
2044814 AAAAATGCCT
* * * * *
2044824 GAATGTATCGATA-CATAGATATATGTATCGATACATTTGGGTAAAACCCA
1 GAATGTATCGATATAAT-GAAAAATGTATCGATACATCTGGGTAAAACCTA
* *
2044874 GAATGTATCAATATAATGAAAAATGTATCGATACATCCGGGTAAAACCTA
1 GAATGTATCGATATAATGAAAAATGTATCGATACATCTGGGTAAAACCTA
* * * * *
2044924 AAACGTATCGATACAATGAATAATGTATTGATACATCTGGGTAAAACCTA
1 GAATGTATCGATATAATGAAAAATGTATCGATACATCTGGGTAAAACCTA
**
2044974 GAATGTATCGATATAATGAGGAATGTATCGATACA
1 GAATGTATCGATATAATGAAAAATGTATCGATACA
2045009 AATTGTGAAA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
50 112 0.98
51 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (50 bp):
GAATGTATCGATATAATGAAAAATGTATCGATACATCTGGGTAAAACCTA
Found at i:2044951 original size:100 final size:100
Alignment explanation
Indices: 2044828--2045008 Score: 276
Period size: 100 Copynumber: 1.8 Consensus size: 100
2044818 ATGCCTGAAT
*
2044828 GTATCGATACATAGATATATGTATCGATACATTTGGGTAAAACCCAGAATGTATCAATATAATGA
1 GTATCGATACATAGATATATGTATCGATACATCTGGGTAAAACCCAGAATGTATCAATATAATGA
2044893 AAAATGTATCGATACATCCGGGTAAAACCTAAAAC
66 AAAATGTATCGATACATCCGGGTAAAACCTAAAAC
* * *
2044928 GTATCGATACA-ATGA-ATAATGTATTGATACATCTGGGTAAAACCTAGAATGTATCGATATAAT
1 GTATCGATACATA-GATAT-ATGTATCGATACATCTGGGTAAAACCCAGAATGTATCAATATAAT
**
2044991 GAGGAATGTATCGATACA
64 GAAAAATGTATCGATACA
2045009 AATTGTGAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
99 3 0.04
100 70 0.96
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (100 bp):
GTATCGATACATAGATATATGTATCGATACATCTGGGTAAAACCCAGAATGTATCAATATAATGA
AAAATGTATCGATACATCCGGGTAAAACCTAAAAC
Found at i:2051213 original size:79 final size:78
Alignment explanation
Indices: 2051121--2052138 Score: 875
Period size: 79 Copynumber: 13.0 Consensus size: 78
2051111 AACAAAATTA
* *
2051121 GGGTTGGAGTATCCCCTCAAGAATAACGGGGTTAGAGTATCCCC-AGTGGTGAAAAATCAATGTT
1 GGGTTGGAGTATCCCCTCAA-AATAACGGGGTTGGAGTATCCCCGA-TTGTGAAAAATCAATGTT
2051185 TTAGAAATAAAACCG
64 TTAGAAATAAAACCG
* * *
2051200 GGGTTGGAGTATCCCCTCGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATCAATGTTTT
1 GGGTTGGAGTATCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTT
*
2051265 AGAAATAAAGCCG
66 AGAAATAAAACCG
** * * * **
2051278 GGGTTAAAGTGTCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
* *
2051343 T-GAAAACAAAATC-
65 TAG-AAATAAAACCG
* * * * * *
2051356 GGGTTGGAGTATCCCCTCAAAAACAACAGGGTTAGAGTATCCCTGATGGTGAAAAATTAATGTTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
* * **
2051421 TATAAAGAAATTCG
65 TAGAAATAAAACCG
* * * **
2051435 GGGTTAGAGTACCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATTGT-AGAAAATCGGTGTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGA-AAAATCAATGTT
2051499 TT-GAAAATAAAACCG
64 TTAG-AAATAAAACCG
* * * * * * * *
2051514 AGGTTAGAGTATCCCTTCGAAAACAACGGGGTTAGAGTATCCCCGATGGTGGAAAATCAGTGTTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
2051579 TAGAAATAAAACCG
65 TAGAAATAAAACCG
* * * * ** * *
2051593 AGGTTGGA-TATCCCCTCGAAAATAATGGTGTTGGCGTATCCATGATTGTGAAAAATTAGTGTTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
*
2051657 TGGAAATAAAACCG
65 TAGAAATAAAACCG
* * * *
2051671 AGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATAGTGAAAAATCGATGTTT
1 GGGTTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
*
2051736 TAGAAATAAAATCG
65 TAGAAATAAAACCG
* * * * * * *
2051750 GGGTTAGAGTATCCCTTCGAAATAATGGGGTCGGAGTATCCCCGATTGTGGAAAATCAATGTTCT
1 GGGTTGGAGTATCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTT
* *
2051815 AGAAATAAAATCA
66 AGAAATAAAACCG
* * * * * * * * * * *
2051828 GAGTTAGAGTATTCCCTTAAAAACAACAGGGTTGGAGTATCCCCGATGGTGGAAAATTAGTATTT
1 GGGTTGGAGTA-TCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
**
2051893 TAGAAATAAAAATG
65 TAGAAATAAAACCG
** * * * * ** * *
2051907 GGGTTGGAGTATCCCCTTGAAATAATGGGTTTAGAGTATTCTTGATTGTGAAAAATCGATGTTCT
1 GGGTTGGAGTATCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTT
2051972 -GAAAATAAAACCG
66 AG-AAATAAAACCG
* * * ** * * * ***
2051985 AGGTTGGAGTATTCCCT-AAAAAATACAAGGTTGAAGTATCCCCGATGGTGGAAAATTGGTGTTT
1 GGGTTGGAGTATCCCCTCAAAATA-ACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTT
* *
2052049 TGGAAATAAAACTG
65 TAGAAATAAAACCG
* * * * * * * * *
2052063 GGGTTGGAGTATCCTCTTGAAAATAACGGAGCTGAAGTATCCTCGATGGTGGAAAATCAGA-ATT
1 GGGTTGGAGTATCC-CCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCA-ATGTT
2052127 TTAGAAATAAAA
64 TTAGAAATAAAA
2052139 ACATGAATGA
Statistics
Matches: 762, Mismatches: 160, Indels: 34
0.80 0.17 0.04
Matches are distributed among these distances:
77 5 0.01
78 369 0.48
79 382 0.50
80 6 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTTT
AGAAATAAAACCG
Found at i:2051394 original size:157 final size:158
Alignment explanation
Indices: 2051121--2052091 Score: 935
Period size: 157 Copynumber: 6.2 Consensus size: 158
2051111 AACAAAATTA
* * * *
2051121 GGGTTGGAGTATCCCCTCAAGAATAACGGGGTTAGAGTATCCCC-AGTGGTGAAAAATCAATGTT
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGA-TTGTGAAAAATCGATGTT
* * * *
2051185 TT-AGAAATAAAACCGGGGTTGGAGTATCCCCTC-GAAATAAC-GAGGTTGGAGTATCCCCGATT
65 TTGA-AAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACAACAG-GGTTGGAGTATCCCCGATG
* *
2051247 ATGAAAAATCAATGTTTTAGAAATAAAGCCG
128 GTGAAAAATCAATGTTTTAGAAATAAAACCG
* * * *
2051278 GGGTTAAAGTGTCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTT
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTT
* * * *
2051343 TGAAAACAAAATCG-GGTTGGAGTATCCCCTCAAAAACAACAGGGTTAGAGTATCCCTGATGGTG
66 TGAAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACAACAGGGTTGGAGTATCCCCGATGGTG
* * * **
2051407 AAAAATTAATGTTTTATAAAGAAATTCG
131 AAAAATCAATGTTTTAGAAATAAAACCG
* * * * *
2051435 GGGTTAGAGTACCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATTGT-AGAAAATCGGTGTT
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGA-AAAATCGATGTT
* * * * *
2051499 TTGAAAATAAAACCGAGGTTAGAGTATCCCTTCGAAAACAACGGGGTTAGAGTATCCCCGATGGT
65 TTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACAACAGGGTTGGAGTATCCCCGATGGT
* *
2051564 GGAAAATCAGTGTTTTAGAAATAAAACCG
130 GAAAAATCAATGTTTTAGAAATAAAACCG
* * * * * * * ** *
2051593 AGGTTGGA-TATCCCCTCGAAAATAATGGTGTTGGCGTATCCATGATTGTGAAAAAT-TAGTGTT
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGA-TGTT
* * * * * *
2051656 TTGGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCGATAGT
65 TTGAAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACAACAGGGTTGGAGTATCCCCGATGGT
* *
2051721 GAAAAATCGATGTTTTAGAAATAAAATCG
130 GAAAAATCAATGTTTTAGAAATAAAACCG
* * * ** * * *
2051750 GGGTTAGAGTATCCCTTC-GAAATAATGGGGTCGGAGTATCCCCGATTGTGGAAAATCAATGTTC
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTT
* * * *
2051814 T-AGAAATAAAATC-AGAGTTAGAGTATTCCCTTAAAAACAACAGGGTTGGAGTATCCCCGATGG
66 TGA-AAATAAAACCGAG-GTTGGAGTATCCCCTCAAAAACAACAGGGTTGGAGTATCCCCGATGG
* * * * **
2051877 TGGAAAATTAGTATTTTAGAAATAAAAATG
129 TGAAAAATCAATGTTTTAGAAATAAAACCG
* ** * * * ** *
2051907 GGGTTGGAGTATCCCCT-TGAAATAATGGGTTTAGAGTATTCTTGATTGTGAAAAATCGATGTTC
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTT
* * *
2051971 TGAAAATAAAACCGAGGTTGGAGTATTCCCT-AAAAA-ATACAAGGTTGAAGTATCCCCGATGGT
66 TGAAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACA-ACAGGGTTGGAGTATCCCCGATGGT
* *** * *
2052034 GGAAAATTGGTGTTTTGGAAATAAAACTG
130 GAAAAATCAATGTTTTAGAAATAAAACCG
* * **
2052063 GGGTTGGAGTATCCTCTTGAAAATAACGG
1 GGGTTAGAGTATCCCCTCAAAAATAACGG
2052092 AGCTGAAGTA
Statistics
Matches: 681, Mismatches: 116, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
155 1 0.00
156 89 0.13
157 503 0.74
158 88 0.13
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (158 bp):
GGGTTAGAGTATCCCCTCAAAAATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTT
TGAAAATAAAACCGAGGTTGGAGTATCCCCTCAAAAACAACAGGGTTGGAGTATCCCCGATGGTG
AAAAATCAATGTTTTAGAAATAAAACCG
Found at i:2057808 original size:22 final size:24
Alignment explanation
Indices: 2057780--2057829 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
2057770 TAAAACAAAA
**
2057780 AAAATAACG-A-ACAAATTTACAT
1 AAAATAACGCATACAAAAATACAT
2057802 AAAATAACGCATACAAAAATACAT
1 AAAATAACGCATACAAAAATACAT
2057826 AAAA
1 AAAA
2057830 GAATGGATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 9 0.38
23 1 0.04
24 14 0.58
ACGTcount: A:0.64, C:0.14, G:0.04, T:0.18
Consensus pattern (24 bp):
AAAATAACGCATACAAAAATACAT
Found at i:2058105 original size:36 final size:37
Alignment explanation
Indices: 2058039--2058112 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 37
2058029 TGAATACGGG
*
2058039 GTTGGAGTACCCCCGATGATGAAAATTTTAATATTTT
1 GTTGGAGTACCCCCGATGATGAAAAATTTAATATTTT
*
2058076 GTTGGAGTATCCCCGA-GATGAAAAATTTAATATTTT
1 GTTGGAGTACCCCCGATGATGAAAAATTTAATATTTT
2058112 G
1 G
2058113 GAAACAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 20 0.57
37 15 0.43
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.36
Consensus pattern (37 bp):
GTTGGAGTACCCCCGATGATGAAAAATTTAATATTTT
Found at i:2058145 original size:25 final size:27
Alignment explanation
Indices: 2058117--2058167 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
2058107 ATTTTGGAAA
2058117 CAAAAAT-A-GGGTTAAAGTATCCCCT
1 CAAAAATAACGGGTTAAAGTATCCCCT
*
2058142 CAAAAATAACGGGGTTAGAGTATCCC
1 CAAAAATAAC-GGGTTAAAGTATCCC
2058168 TGAGATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 1 0.05
28 14 0.64
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
CAAAAATAACGGGTTAAAGTATCCCCT
Found at i:2058290 original size:80 final size:78
Alignment explanation
Indices: 2058076--2058292 Score: 256
Period size: 79 Copynumber: 2.7 Consensus size: 78
2058066 TTAATATTTT
* * * ** *
2058076 GTTGGAGTATCCCCGAGATGAAAAATTTAATATTTTGGAAACAAAAATAGGGTTAAAGTATCCCC
1 GTTGGAGTATCCCTGAGATGAAAAATTTAAT-TTTTGGAAATAAAAATGGGGTTGGAGCATCCCC
*
2058141 TCAAAAATAACGGG
65 TCAAAAATAACAGG
* ** *
2058155 GTTAGAGTATCCCTGAGATGAAAAATTTAAATTTTTGGAAAT-AAAATAGAAGTTGGAGCATCCT
1 GTTGGAGTATCCCTGAGATGAAAAATTT-AATTTTTGGAAATAAAAAT-GGGGTTGGAGCATCCC
*
2058219 CTCGAAAATAACAGG
64 CTCAAAAATAACAGG
* *
2058234 GTTGGAGTATCCCTGATGGTGAAAAATTTGATCTTTTGGAAATAAAAATGGGGTTGGAG
1 GTTGGAGTATCCCTGA-GATGAAAAATTTAAT-TTTTGGAAATAAAAATGGGGTTGGAG
2058293 TGTCCCCTTT
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
78 5 0.04
79 74 0.64
80 32 0.28
81 5 0.04
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (78 bp):
GTTGGAGTATCCCTGAGATGAAAAATTTAATTTTTGGAAATAAAAATGGGGTTGGAGCATCCCCT
CAAAAATAACAGG
Found at i:2059567 original size:9 final size:9
Alignment explanation
Indices: 2059552--2059582 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
2059542 CATTTTTATG
2059552 AAAAGAAAA
1 AAAAGAAAA
*
2059561 GAAAGAAAA
1 AAAAGAAAA
2059570 AAAAGAAAA
1 AAAAGAAAA
2059579 AAAA
1 AAAA
2059583 AGTGCATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:2059575 original size:13 final size:13
Alignment explanation
Indices: 2059551--2059583 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
2059541 ACATTTTTAT
2059551 GAAAAGAAAAGAAA
1 GAAAA-AAAAGAAA
2059565 GAAAAAAAAGAAA
1 GAAAAAAAAGAAA
2059578 -AAAAAA
1 GAAAAAA
2059584 GTGCATGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 8 0.42
14 5 0.26
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAGAAA
Found at i:2060865 original size:20 final size:21
Alignment explanation
Indices: 2060842--2060894 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
2060832 ATTTTAGGCA
*
2060842 TGTATCGATGCATTTACT-TC
1 TGTATCGATACATTTACTATC
* * *
2060862 TGTATTGATACATTTATTATT
1 TGTATCGATACATTTACTATC
2060883 TGTATCGATACA
1 TGTATCGATACA
2060895 AATTGTAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.47
Consensus pattern (21 bp):
TGTATCGATACATTTACTATC
Found at i:2061796 original size:42 final size:41
Alignment explanation
Indices: 2061750--2061972 Score: 249
Period size: 42 Copynumber: 5.4 Consensus size: 41
2061740 ACATTCTACA
* *
2061750 CTTTGAGGACAAAGGAAAAAAGGAAATGAAGTGCATCTTGCT
1 CTTTGAGGACAAAAGAAAAAAGGAAAT-AAGTGCATCCTGCT
* *
2061792 CTTTGAGGACAAAAGAAGAAAAGGAAATAAGGTGCAACATGCT
1 CTTTGAGGACAAAAGAA-AAAAGGAAATAA-GTGCATCCTGCT
* *
2061835 CTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGCATCCTCCT
1 CTTTGAGGACAAAAGAAAAAAGGAAAT-AAGTGCATCCTGCT
* *
2061877 CTTTGAGGAC-AAAGAGAAAAGGAAATAAAGTGCGTCCTGCT
1 CTTTGAGGACAAAAGAAAAAAGGAAAT-AAGTGCATCCTGCT
* *
2061918 CTTTGAAGACAAAAGGAAAAGAAGG--A-AA-TGCATCTTGCT
1 CTTTGAGGACAAAA-GAAAA-AAGGAAATAAGTGCATCCTGCT
2061957 CTTTGAGGACTAAAAG
1 CTTTGAGGAC-AAAAG
2061973 GTGCCCCCAA
Statistics
Matches: 160, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 19 0.12
40 6 0.04
41 38 0.24
42 51 0.32
43 42 0.26
44 4 0.03
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (41 bp):
CTTTGAGGACAAAAGAAAAAAGGAAATAAGTGCATCCTGCT
Found at i:2061839 original size:85 final size:83
Alignment explanation
Indices: 2061750--2061972 Score: 276
Period size: 85 Copynumber: 2.7 Consensus size: 83
2061740 ACATTCTACA
2061750 CTTTGAGGACAAAGGAAAAAAGGAAATGAAGTGCATCTTGCTCTTTGAGGACAAAAGAAGAAAAG
1 CTTTGAGGACAAAGGAAAAAAGGAAAT-AAGTGCATCTTGCTCTTTGAGGACAAAAG-AGAAAAG
*
2061815 GAAATAAGGTGCAACATGCT
64 GAAATAAAGTGCAACATGCT
* * * *
2061835 CTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGCATCCTCCTCTTTGAGGAC-AAAGAGAAAAGG
1 CTTTGAGGACAAAGGAAAAAAGGAAAT-AAGTGCATCTTGCTCTTTGAGGACAAAAGAGAAAAGG
** *
2061899 AAATAAAGTGCGTCCTGCT
65 AAATAAAGTGCAACATGCT
*
2061918 CTTTGAAGACAAAAGGAAAAGAAGG--A-AA-TGCATCTTGCTCTTTGAGGACTAAAAG
1 CTTTGAGGAC-AAAGGAAAA-AAGGAAATAAGTGCATCTTGCTCTTTGAGGAC-AAAAG
2061973 GTGCCCCCAA
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
80 19 0.16
81 2 0.02
82 4 0.03
83 33 0.28
84 11 0.09
85 51 0.43
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (83 bp):
CTTTGAGGACAAAGGAAAAAAGGAAATAAGTGCATCTTGCTCTTTGAGGACAAAAGAGAAAAGGA
AATAAAGTGCAACATGCT
Found at i:2061903 original size:41 final size:41
Alignment explanation
Indices: 2061750--2061966 Score: 260
Period size: 41 Copynumber: 5.2 Consensus size: 41
2061740 ACATTCTACA
* * *
2061750 CTTTGAGGACAAAGGAAAAAAGGAAATGAAGTGCATCTTGCT
1 CTTTGAGGACAAA-GAGAAAAGGAAATAAAGTGCATCCTGCT
* * *
2061792 CTTTGAGGACAAAAGAAGAAAAGGAAATAAGGTGCAACATGCT
1 CTTTGAGGAC-AAAG-AGAAAAGGAAATAAAGTGCATCCTGCT
*
2061835 CTTTGAGGACAAAAGAGAAAAGGAAATAAAGTGCATCCTCCT
1 CTTTGAGGAC-AAAGAGAAAAGGAAATAAAGTGCATCCTGCT
*
2061877 CTTTGAGGACAAAGAGAAAAGGAAATAAAGTGCGTCCTGCT
1 CTTTGAGGACAAAGAGAAAAGGAAATAAAGTGCATCCTGCT
* ** *
2061918 CTTTGAAGACAAA-AGGAAAA-GAAGGAAA-TGCATCTTGCT
1 CTTTGAGGACAAAGA-GAAAAGGAAATAAAGTGCATCCTGCT
2061957 CTTTGAGGAC
1 CTTTGAGGAC
2061967 TAAAAGGTGC
Statistics
Matches: 155, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 18 0.12
40 7 0.05
41 46 0.30
42 44 0.28
43 40 0.26
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (41 bp):
CTTTGAGGACAAAGAGAAAAGGAAATAAAGTGCATCCTGCT
Found at i:2062032 original size:62 final size:62
Alignment explanation
Indices: 2061947--2062847 Score: 953
Period size: 62 Copynumber: 14.4 Consensus size: 62
2061937 AGAAGGAAAT
* * * *
2061947 GCATCTTGCTCTTTGAGGACTAAAAGGTGCCCCCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* * *
2062009 GTATCTTGCTCTTTGAGGACTAAAAGGGGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* * * * * * ** *
2062071 ACGTCTTTCTCTTTGAAGACTAAAAGGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
** * * * * *
2062133 GTGTCCTGCTCTTTAAAGACCAAAATGTGCCACCAACTCATGTAGGCTTT-AAAAGAAAATA-
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAA-AG
* *
2062194 GCATCCTGCTCTTTGAGGACTAAAA-GTGGCCACCAACTCATAAT-GGCTTTAAAACGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGT-GCCACCAACTCAT-GTGGGCTTTAAAAAGAAAAAG
*
2062256 GCATCCTACTCTTTGAGGACTAAAAGGTGCCACCAACT--TGTGCGAGCTTTAAAAAGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTG-G-GCTTTAAAAAGAAAAAG
* * * *
2062318 GCATCCTACTCTTTGAGGACTAAAA-GTTCCACCAACTCGTGTGGGTTTTAAGAAAGAAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAA-AAAG-AAAAAG
* * * * *
2062381 AAAGCATCTTGCTCTTGGAGGACTTAAAA-GTGCCACCAACTAATGTGGGCTTTACAAGGAAAAA
1 ---GCATCCTGCTCTTTGAGGAC-TAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAG-AAAA
*
2062445 AA
61 AG
*** * * * *
2062447 TTGTCCTGCTCTTTGAAGACTAAAAGGTGTCACCAACTTATGTGGGCTTTAAAAAGAAAATG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* * * *
2062509 GCATCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCCTGTGAGCTTTAAAAAGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* * * * *
2062571 ACATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCATCTGGGCTTT-AAAAGAAAATG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* * * * **
2062632 GCGTCCTACTTTTTGTA-TACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG
1 GCATCCTGCTCTTTG-AGGACT-AAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* *
2062694 ACATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAAAA
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAA-AAAG---AAAAA
*
2062759 A
62 G
** * *
2062760 GTGTCATGCTCTTTGAGGACTAAAAGCTGCCACCAACTC-TGTGGGCTTTAAAAAGAAAAAG
1 GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
* *
2062821 GCATCATGCTCTCTGAGGACTAAAAGG
1 GCATCCTGCTCTTTGAGGACTAAAAGG
2062848 ATAAAAGGGG
Statistics
Matches: 705, Mismatches: 107, Indels: 55
0.81 0.12 0.06
Matches are distributed among these distances:
59 1 0.00
60 3 0.00
61 145 0.21
62 393 0.56
63 56 0.08
64 4 0.01
65 12 0.02
66 65 0.09
67 26 0.04
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (62 bp):
GCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAG
Found at i:2062518 original size:376 final size:374
Alignment explanation
Indices: 2061955--2062847 Score: 1177
Period size: 376 Copynumber: 2.4 Consensus size: 374
2061945 ATGCATCTTG
* *
2061955 CTCTTTGAGGACTAAAAGGTGCCCCCAACTCGTGTGGGCTTTGA-AAAG-AAAAAG---GTATCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAAGAAAGTATCT
* * * *
2062015 TGCTCTTTGAGGACTAAAAGGGGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGACGTCTTTC
66 TGCTCTTTGAGGACTAAAA-GTGCCACCAACT-ATGTGGGCTTTAAAAAGAAAAAAACGTCCTGC
* * **
2062080 TCTTTGAAGACTAAAAGGTGCCACTAACTTGTGTGGGCTTTAAAAAGAGAAAGGTGTCCTGCTCT
129 TCTTTGAAGACTAAAAGGTGCCACCAACTTATGTGGGCTTTAAAAAGAGAAAGGCATCCTGCTCT
* *
2062145 TTAAAGACCAAAATGTGCCACCAACTCATGT-AGGCTTT-AAAAGAAAATAG-CATCCTGCTCTT
194 TTAAAGACCAAAAAGTGCCACCAACTCATGTGA-GCTTTAAAAAGAAAA-AGACATCCTACTCTT
2062207 TGAGGACTAAAA-GTGGCCACCAACTCATAAT-GGCTTTAAAACGAAAAAGGCATCCTACTCTTT
257 TGAGGACTAAAAGGT-GCCACCAACTCAT-ATGGGCTTTAAAA-GAAAAAGGCATCCTACTCTTT
*
2062270 G-AGGACT-AAAAGGTGCCACCAACTTGTGCGAGCTTTAAAAAGAAAAAGGCATCCTA
319 GTA-GACTGAAAA-GTGCCACCAACTTGTGCGAGCTTTAAAAAGAAAAAGACATCCTA
* * *
2062326 CTCTTTGAGGACTAAAA-GTTCCACCAACTCGTGTGGGTTTTAAGAAAGAAAAAAGAAAGCATCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAAGAAAGTATCT
* * * *
2062390 TGCTCTTGGAGGACTTAAAAGTGCCACCAACTAATGTGGGCTTTACAAGGAAAAAAATTGTCCTG
66 TGCTCTTTGAGGAC-TAAAAGTGCCACCAACT-ATGTGGGCTTTAAAAAGAAAAAAA-CGTCCTG
*
2062455 CTCTTTGAAGACTAAAAGGTGTCACCAACTTATGTGGGCTTTAAAAAGA-AAATGGCATCCTGCT
128 CTCTTTGAAGACTAAAAGGTGCCACCAACTTATGTGGGCTTTAAAAAGAGAAA-GGCATCCTGCT
* * *
2062519 CTTTAAGGACTAAAAAGTGCCACCAACTCCTGTGAGCTTTAAAAAGAAAAAGACATCCTACTCTT
192 CTTTAAAGACCAAAAAGTGCCACCAACTCATGTGAGCTTTAAAAAGAAAAAGACATCCTACTCTT
* * * * *
2062584 TGAGGACTGAAAGGTGCCACCAACTCATCTGGGCTTTAAAAGAAAATGGCGTCCTACTTTTTGTA
257 TGAGGACTAAAAGGTGCCACCAACTCATATGGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGTA
* * * *
2062649 TACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGACATCCTG
322 GACTGAAAAGTGCCACCAACTTGTGCGAGCTTTAAAAAGAAAAAGACATCCTA
* *
2062702 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAA-AAAGTGTCA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAAGAAAGTATCT
* ** * *
2062766 TGCTCTTTGAGGACTAAAAGCTGCCACCAACTCTGTGGGCTTTAAAAAGAAAAAGGCATCATGCT
66 TGCTCTTTGAGGACTAAAAG-TGCCACCAACTATGTGGGCTTTAAAAAGAAAAAAACGTCCTGCT
* *
2062831 CTCTGAGGACTAAAAGG
130 CTTTGAAGACTAAAAGG
2062848 ATAAAAGGGG
Statistics
Matches: 455, Mismatches: 50, Indels: 31
0.85 0.09 0.06
Matches are distributed among these distances:
370 22 0.05
371 21 0.05
372 6 0.01
374 21 0.05
375 78 0.17
376 210 0.46
377 95 0.21
378 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (374 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAGAAAGAAAAAAGAAAGTATCT
TGCTCTTTGAGGACTAAAAGTGCCACCAACTATGTGGGCTTTAAAAAGAAAAAAACGTCCTGCTC
TTTGAAGACTAAAAGGTGCCACCAACTTATGTGGGCTTTAAAAAGAGAAAGGCATCCTGCTCTTT
AAAGACCAAAAAGTGCCACCAACTCATGTGAGCTTTAAAAAGAAAAAGACATCCTACTCTTTGAG
GACTAAAAGGTGCCACCAACTCATATGGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGTAGACT
GAAAAGTGCCACCAACTTGTGCGAGCTTTAAAAAGAAAAAGACATCCTA
Found at i:2062961 original size:31 final size:30
Alignment explanation
Indices: 2062868--2062970 Score: 109
Period size: 31 Copynumber: 3.3 Consensus size: 30
2062858 TGCCACAGAT
*
2062868 TCATGGACTTTGAA-AAGAGATGTCACTAAG
1 TCATGGAC-TTGAAGAAGAGATGCCACTAAG
* *
2062898 TCATGGATTTTTAAGAAAGAGATGCCACTAAG
1 TCATGGA-CTTGAAG-AAGAGATGCCACTAAG
* *
2062930 TCATGGACTTGAAGAAGTAGAGGCCATTAAG
1 TCATGGACTTGAAGAAG-AGATGCCACTAAG
*
2062961 TCGTGGACTT
1 TCATGGACTT
2062971 TGAAAAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
30 14 0.23
31 25 0.41
32 22 0.36
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
TCATGGACTTGAAGAAGAGATGCCACTAAG
Found at i:2064365 original size:10 final size:10
Alignment explanation
Indices: 2064342--2064381 Score: 73
Period size: 10 Copynumber: 4.1 Consensus size: 10
2064332 AATGTGAGAT
2064342 GTGATAAA-G
1 GTGATAAAGG
2064351 GTGATAAAGG
1 GTGATAAAGG
2064361 GTGATAAAGG
1 GTGATAAAGG
2064371 GTGATAAAGG
1 GTGATAAAGG
2064381 G
1 G
2064382 ATTTTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (10 bp):
GTGATAAAGG
Found at i:2068238 original size:79 final size:78
Alignment explanation
Indices: 2068148--2068432 Score: 293
Period size: 79 Copynumber: 3.6 Consensus size: 78
2068138 ACCCCCGATT
* *
2068148 ATGAAAAATTTAATATTTTGGAAATAAAAATGGGGTTGGAGTATCCCCTCGGAAATAACGAGGTT
1 ATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTTGGAGTATCCCCTCGAAAATAACG-GGTT
*
2068213 AAAATATCCCCGAG
65 AAAGTATCCCCGAG
* * *
2068227 ATGAGAAATTTAATATTTTGAAAATAAAAATGGGGTTGAAGTATCTCCTCGAAAATAACGGGATT
1 ATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTTGGAGTATCCCCTCGAAAATAACGGG-TT
* **
2068292 AGAGTATCTTCGAG
65 AAAGTATCCCCGAG
* * *** * *
2068306 ATGAAAAATTTAA-ATTTTAAAAATAAAATTGACATTGGAGTATCTCTTCGAAAATAACGGAGTT
1 ATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTTGGAGTATCCCCTCGAAAATAACGG-GTT
* *
2068370 GAAGTATCCCTGATG
65 AAAGTATCCCCGA-G
* ** * * * *
2068385 GTGAAAAATTCGATCTTTTGGAAATAAAAAATAGGGTTGGAGTGTCCC
1 ATGAAAAATTTAATATTTTGAAAAT-AAAAATGGGGTTGGAGTATCCC
2068433 TTTTTGATTT
Statistics
Matches: 166, Mismatches: 35, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
78 52 0.31
79 91 0.55
80 8 0.05
81 15 0.09
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (78 bp):
ATGAAAAATTTAATATTTTGAAAATAAAAATGGGGTTGGAGTATCCCCTCGAAAATAACGGGTTA
AAGTATCCCCGAG
Found at i:2080024 original size:13 final size:13
Alignment explanation
Indices: 2080006--2080030 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2079996 CAATTCATCA
2080006 TGTATCGATACAT
1 TGTATCGATACAT
2080019 TGTATCGATACA
1 TGTATCGATACA
2080031 ATGTCCTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2080028 original size:33 final size:33
Alignment explanation
Indices: 2079986--2080050 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2079976 TTTAAAGCAG
2079986 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGTCAT-ATGTATCGATACAT
*
2080019 TGTATCGATACAATGTCCTATGTATCGATACA
1 TGTATCGATACAATGTCATATGTATCGATACA
2080051 GATAGTGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 27 0.90
34 3 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTCATATGTATCGATACAT
Found at i:2080124 original size:19 final size:19
Alignment explanation
Indices: 2080080--2080152 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
2080070 CTGCTAGTTT
* **
2080080 CATGTATCAATACAATTGTG
1 CATGTATCGATACAA-TGAA
2080100 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
2080119 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
2080140 -ATGTATCGATACA
1 CATGTATCGATACA
2080153 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.38
20 28 0.60
21 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2081075 original size:33 final size:33
Alignment explanation
Indices: 2081037--2081103 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
2081027 AAGTGCACCA
*
2081037 AAGTGCTCA-TCCATGTGCTGCGAGAGTGAAGTG
1 AAGTGCTCACT-CATGTGCTGCGAAAGTGAAGTG
* *
2081070 AAGTGCTCACTCATGTGTTGTGAAAGTGAAGTG
1 AAGTGCTCACTCATGTGCTGCGAAAGTGAAGTG
2081103 A
1 A
2081104 TCAACTCTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (33 bp):
AAGTGCTCACTCATGTGCTGCGAAAGTGAAGTG
Found at i:2086129 original size:44 final size:47
Alignment explanation
Indices: 2086066--2086184 Score: 163
Period size: 52 Copynumber: 2.5 Consensus size: 47
2086056 CGAAATATGA
2086066 AAATTTGCCTGCATGTATCGATA-A-A-TGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATATATAGTGTATCGATACATCTGGGC
*
2086110 AAATTTGCCTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGAT--A---TATAGTGTATCGATACATCTGGGC
2086162 AAATTTGCCTGCATGTATCGATA
1 AAATTTGCCTGCATGTATCGATA
2086185 CAAAGATCAG
Statistics
Matches: 65, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
44 21 0.32
46 1 0.02
50 2 0.03
51 1 0.02
52 40 0.62
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (47 bp):
AAATTTGCCTGCATGTATCGATATATAGTGTATCGATACATCTGGGC
Found at i:2086197 original size:52 final size:52
Alignment explanation
Indices: 2086091--2086206 Score: 180
Period size: 52 Copynumber: 2.2 Consensus size: 52
2086081 TATCGATAAA
* ***
2086091 TGTATCGATACATCTGGGCAAATTTGCCTGTATGTATCGATACATTTTATAG
1 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGATAG
2086143 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACA-AAGATCAG
1 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGAT-AG
2086195 TGTATCGATACA
1 TGTATCGATACA
2086207 ATGTATCGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 2 0.03
52 57 0.97
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (52 bp):
TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGATAG
Done.