Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold152
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2945013
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 5 of 18
Found at i:661689 original size:18 final size:18
Alignment explanation
Indices: 661620--661690 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
661610 CCTGTCATCC
* *
661620 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
661638 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
661660 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
661680 CTCCTGTCTCT
1 CTCCTGTCTCT
661691 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:667098 original size:12 final size:11
Alignment explanation
Indices: 667076--667151 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
667066 AGAGAAAGAA
*
667076 GAGAGAGGAGG
1 GAGATAGGAGG
667087 GATGATAGGAGG
1 GA-GATAGGAGG
*
667099 AGAGACAGGA--
1 -GAGATAGGAGG
*
667109 GAGATAGTA--
1 GAGATAGGAGG
667118 GAGATAGGAGG
1 GAGATAGGAGG
667129 GATGATAGGAGG
1 GA-GATAGGAGG
*
667141 AGAGACAGGAG
1 -GAGATAGGAG
667152 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:667108 original size:24 final size:24
Alignment explanation
Indices: 667075--667160 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
667065 AAGAGAAAGA
*
667075 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
667099 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
667117 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
667141 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
667161 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:667127 original size:42 final size:42
Alignment explanation
Indices: 667066--667184 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
667056 TAGCCCTCAA
* *
667066 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
667108 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
667150 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
667185 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:674240 original size:33 final size:32
Alignment explanation
Indices: 674203--674297 Score: 79
Period size: 33 Copynumber: 2.9 Consensus size: 32
674193 TAGCCCTCAA
674203 AGAGAAAAAAGAGATAGGAGAGATGATAGGAGG
1 AGAGAAAAAAGAGATAGGAGAGATGATAGG-GG
* *
674236 AGAGATAGAAA-AGATAGCAGAGATAGA-A-GGG
1 AGAGA-AAAAAGAGATAGGAGAGAT-GATAGGGG
* * *
674267 ATGATAAAAGGAGAGATAGGAGAGATAATAG
1 A-GAGAAAA-AAGAGATAGGAGAGATGATAG
674298 AGAGAGGAGG
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
31 5 0.10
32 6 0.12
33 31 0.65
34 6 0.12
ACGTcount: A:0.52, C:0.01, G:0.36, T:0.12
Consensus pattern (32 bp):
AGAGAAAAAAGAGATAGGAGAGATGATAGGGG
Found at i:674259 original size:42 final size:42
Alignment explanation
Indices: 674212--674318 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 42
674202 AAGAGAAAAA
* *
674212 AGAGATAGGAGAGATGATAGGAGGAGAGATAGAAAAGATAGC
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGAAAAGATAAC
* ** * * *
674254 AGAGATAGAAGGGATGATAAAAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGAAAAGATAAC
*
674296 AGAGAGAGGAGGGATGATAGGAG
1 AGAGATAGGAGGGATGATAGGAG
674319 AAGGAGAGAA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.47, C:0.01, G:0.40, T:0.12
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAGGAGGAGAGATAGAAAAGATAAC
Found at i:674305 original size:18 final size:18
Alignment explanation
Indices: 674278--674327 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
674268 TGATAAAAGG
*
674278 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
674296 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
674314 AG-GAGAAGGAGAGA
1 AGAGAG-AGGAGAGA
674328 AAAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 3 0.11
18 24 0.89
ACGTcount: A:0.46, C:0.00, G:0.44, T:0.10
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:674802 original size:35 final size:35
Alignment explanation
Indices: 674756--674824 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
674746 GAAGCAACAA
*
674756 TGGCCCGTTTCTTGAATGGGTTGAATCATGATATG
1 TGGCCCATTTCTTGAATGGGTTGAATCATGATATG
674791 TGGCCCATTTCTTGAATGGGTTGAATCATGATAT
1 TGGCCCATTTCTTGAATGGGTTGAATCATGATAT
674825 TCGTGACATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (35 bp):
TGGCCCATTTCTTGAATGGGTTGAATCATGATATG
Found at i:675338 original size:22 final size:22
Alignment explanation
Indices: 675310--675353 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
675300 ATTTTCCATT
675310 CAAGATGCTTGGTACTTGGGAA
1 CAAGATGCTTGGTACTTGGGAA
675332 CAAGATGCTTGGTACTTGGGAA
1 CAAGATGCTTGGTACTTGGGAA
675354 GGTTTGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (22 bp):
CAAGATGCTTGGTACTTGGGAA
Found at i:680370 original size:12 final size:12
Alignment explanation
Indices: 680353--680379 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
680343 GCATTTGATT
680353 CATCTTGAATAG
1 CATCTTGAATAG
680365 CATCTTGAATAG
1 CATCTTGAATAG
680377 CAT
1 CAT
680380 GCAAAGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (12 bp):
CATCTTGAATAG
Found at i:682134 original size:51 final size:51
Alignment explanation
Indices: 682079--682176 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
682069 GTCTTTAACC
* * * *
682079 TTATTGGTTACTGTTAGGACTGTGATTAGGATTGTCCTTGTTTAGTTAGGA
1 TTATTGATTACTGCTAGGACTGTGATCAGGATTGTCCTTATTTAGTTAGGA
*
682130 TTATTGATTACTGCTAGGACTGTGATCAGGATTGTCTTTATTTAGTT
1 TTATTGATTACTGCTAGGACTGTGATCAGGATTGTCCTTATTTAGTT
682177 GAGACTTTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.46
Consensus pattern (51 bp):
TTATTGATTACTGCTAGGACTGTGATCAGGATTGTCCTTATTTAGTTAGGA
Found at i:687325 original size:15 final size:15
Alignment explanation
Indices: 687297--687336 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
687287 TAATAAGTAG
687297 AAATCAAAAATTAAAA
1 AAAT-AAAAATTAAAA
*
687313 AAATAAAATTTAAAA
1 AAATAAAAATTAAAA
687328 AAATAAAAA
1 AAATAAAAA
687337 AAATCAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAAAAATTAAAA
Found at i:687371 original size:10 final size:9
Alignment explanation
Indices: 687324--687374 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
687314 AATAAAATTT
*
687324 AAAAAAATA
1 AAAAAAATC
687333 AAAAAAATC
1 AAAAAAATC
*
687342 --AATAATC
1 AAAAAAATC
*
687349 AAAGAAATC
1 AAAAAAATC
687358 AAAAAAATTC
1 AAAAAAA-TC
687368 AAAAAAA
1 AAAAAAA
687375 AATGTGAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
7 6 0.18
9 19 0.56
10 9 0.26
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (9 bp):
AAAAAAATC
Found at i:687501 original size:40 final size:40
Alignment explanation
Indices: 687446--687522 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
687436 TGCTTATTTT
687446 CTTTCATGTTTCATGCATGCATATGTTCATTTCATGCTTA
1 CTTTCATGTTTCATGCATGCATATGTTCATTTCATGCTTA
*
687486 CTTTCTTGTTTCATGCATGCATATGTTCATTTCATGC
1 CTTTCATGTTTCATGCATGCATATGTTCATTTCATGC
687523 ATACATGCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.48
Consensus pattern (40 bp):
CTTTCATGTTTCATGCATGCATATGTTCATTTCATGCTTA
Found at i:687823 original size:45 final size:45
Alignment explanation
Indices: 687772--687941 Score: 295
Period size: 45 Copynumber: 3.8 Consensus size: 45
687762 CAGTAATGAT
687772 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
1 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
*
687817 GAAGACAAAGCAGTGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
1 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
* *
687862 GAAGACAAAGCAATGTGGAACAGCAAAGCAATAATGAAGAAAGTG
1 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
* *
687907 GAAGACAAAGCAAAGTGGAACAACAAAGCAACAAG
1 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAG
687942 TTGAAAAATG
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.52, C:0.14, G:0.28, T:0.07
Consensus pattern (45 bp):
GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
Found at i:687923 original size:17 final size:18
Alignment explanation
Indices: 687901--687937 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
687891 AATAATGAAG
*
687901 AAAGTGGAA-GACAAAGC
1 AAAGTGGAACAACAAAGC
687918 AAAGTGGAACAACAAAGC
1 AAAGTGGAACAACAAAGC
687936 AA
1 AA
687938 CAAGTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.57, C:0.14, G:0.24, T:0.05
Consensus pattern (18 bp):
AAAGTGGAACAACAAAGC
Found at i:688296 original size:40 final size:40
Alignment explanation
Indices: 688252--688337 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
688242 CAGTAGCTCC
* * *
688252 AGCAGCTCCCATAGCAGCCTCTATCAGCTCAGCAACCACA
1 AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAGCAACCACA
* * *
688292 AGCAGCTCCCACAGCAGCTTCCGGCAGCTCAGCAACCACG
1 AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAGCAACCACA
688332 AGCAGC
1 AGCAGC
688338 CCTGCAGCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.41, G:0.20, T:0.12
Consensus pattern (40 bp):
AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAGCAACCACA
Found at i:688405 original size:31 final size:31
Alignment explanation
Indices: 688370--688456 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
688360 ACGACAGCTT
**
688370 CAGCAGCTTGCACAGCAACCTCCAGTTGCTC
1 CAGCAGCTCCCACAGCAACCTCCAGTTGCTC
*
688401 CAGCAGCTCCCACAGCAACCTCTAGTTGCTC
1 CAGCAGCTCCCACAGCAACCTCCAGTTGCTC
*
688432 CAGCAGCTCCCACAGCAGCCTCCAG
1 CAGCAGCTCCCACAGCAACCTCCAG
688457 CAGCTCAGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.23, C:0.43, G:0.18, T:0.16
Consensus pattern (31 bp):
CAGCAGCTCCCACAGCAACCTCCAGTTGCTC
Found at i:688454 original size:22 final size:22
Alignment explanation
Indices: 688429--688502 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
688419 CCTCTAGTTG
*
688429 CTCCAGCAGCTCCCACAGCAGC
1 CTCCAGCAGCTCCCACAGCAAC
688451 CTCCAGCAGCT----CAGCAAC
1 CTCCAGCAGCTCCCACAGCAAC
*
688469 CAT-CAGCAGCTCCCACAGTAAC
1 C-TCCAGCAGCTCCCACAGCAAC
*
688491 TTCCAGCAGCTC
1 CTCCAGCAGCTC
688503 GAGCAAGGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
18 15 0.35
19 1 0.02
21 1 0.02
22 26 0.60
ACGTcount: A:0.26, C:0.45, G:0.16, T:0.14
Consensus pattern (22 bp):
CTCCAGCAGCTCCCACAGCAAC
Found at i:688476 original size:40 final size:41
Alignment explanation
Indices: 688432--688508 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 41
688422 CTAGTTGCTC
*
688432 CAGCAGCTCCCACAGCAGCCTCCAGCAGCTC-AGCAACCAT
1 CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAACCAT
* *
688472 CAGCAGCTCCCACAGTAACTTCCAGCAGCTCGAGCAA
1 CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAA
688509 GGAAGAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.29, C:0.42, G:0.18, T:0.12
Consensus pattern (41 bp):
CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAACCAT
Found at i:689494 original size:3 final size:3
Alignment explanation
Indices: 689486--689514 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
689476 GATAAAACAA
689486 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
689515 AAGGGGTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:690615 original size:12 final size:11
Alignment explanation
Indices: 690596--690667 Score: 71
Period size: 12 Copynumber: 6.5 Consensus size: 11
690586 AGAGAAAGAA
690596 GAGATAGGAGG
1 GAGATAGGAGG
690607 GATGATAGGAGG
1 GA-GATAGGAGG
690619 AGAGATAGGA--
1 -GAGATAGGAGG
*
690629 GAGATAGTA--
1 GAGATAGGAGG
690638 GAGATAGGAGG
1 GAGATAGGAGG
690649 GATGATAGGAGG
1 GA-GATAGGAGG
690661 AGAGATA
1 -GAGATA
690668 AGAGAGATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 16 0.30
11 4 0.08
12 29 0.55
13 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:690630 original size:9 final size:9
Alignment explanation
Indices: 690616--690676 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
690606 GGATGATAGG
690616 AGGAGAGAT
1 AGGAGAGAT
690625 AGGAGAGAT
1 AGGAGAGAT
*
690634 AGTAGAGAT
1 AGGAGAGAT
*
690643 AGGAGGGAT
1 AGGAGAGAT
* *
690652 --GATAG-G
1 AGGAGAGAT
690658 AGGAGAGAT
1 AGGAGAGAT
*
690667 AAGAGAGAT
1 AGGAGAGAT
690676 A
1 A
690677 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:690645 original size:42 final size:42
Alignment explanation
Indices: 690586--690704 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
690576 TAGCCCTCAA
* * *
690586 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
690628 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* * *
690670 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
690705 GAGAGAAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
Found at i:705095 original size:12 final size:11
Alignment explanation
Indices: 705076--705147 Score: 71
Period size: 12 Copynumber: 6.5 Consensus size: 11
705066 AGAGAAAGAA
705076 GAGATAGGAGG
1 GAGATAGGAGG
705087 GATGATAGGAGG
1 GA-GATAGGAGG
705099 AGAGATAGGA--
1 -GAGATAGGAGG
*
705109 GAGATAGTA--
1 GAGATAGGAGG
705118 GAGATAGGAGG
1 GAGATAGGAGG
705129 GATGATAGGAGG
1 GA-GATAGGAGG
705141 AGAGATA
1 -GAGATA
705148 AGAGAGATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 16 0.30
11 4 0.08
12 29 0.55
13 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:705110 original size:9 final size:9
Alignment explanation
Indices: 705096--705156 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
705086 GGATGATAGG
705096 AGGAGAGAT
1 AGGAGAGAT
705105 AGGAGAGAT
1 AGGAGAGAT
*
705114 AGTAGAGAT
1 AGGAGAGAT
*
705123 AGGAGGGAT
1 AGGAGAGAT
* *
705132 --GATAG-G
1 AGGAGAGAT
705138 AGGAGAGAT
1 AGGAGAGAT
*
705147 AAGAGAGAT
1 AGGAGAGAT
705156 A
1 A
705157 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.44, C:0.00, G:0.43, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:705125 original size:42 final size:42
Alignment explanation
Indices: 705066--705184 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
705056 TAGCCCTCAA
* * *
705066 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
705108 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* * *
705150 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAG
705185 GAGAGAAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
Found at i:716627 original size:42 final size:42
Alignment explanation
Indices: 716572--716690 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
716562 TTCTTCTCTC
* *
716572 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
716614 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
716656 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
716691 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:716631 original size:12 final size:11
Alignment explanation
Indices: 716605--716680 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
716595 TCTATTATCT
*
716605 CTCCTGTCTCTC
1 CTCCTATCTC-C
716617 CTCCTATCATCC
1 CTCCTATC-TCC
716629 CTCCTATCT--
1 CTCCTATCTCC
*
716638 CTACTATCT--
1 CTCCTATCTCC
*
716647 CTCCTGTCTCTC
1 CTCCTATCTC-C
716659 CTCCTATCATCC
1 CTCCTATC-TCC
*
716671 CTCCTCTCTC
1 CTCCTATCTC
716681 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:716632 original size:24 final size:24
Alignment explanation
Indices: 716596--716681 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
716586 CCTCCTCTCT
* *
716596 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
716620 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
716641 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
716662 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
716682 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:716656 original size:18 final size:18
Alignment explanation
Indices: 716587--716657 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
716577 CCTGTCATCC
* *
716587 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
716605 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
716627 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
716647 CTCCTGTCTCT
1 CTCCTGTCTCT
716658 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:719810 original size:42 final size:42
Alignment explanation
Indices: 719741--720486 Score: 268
Period size: 42 Copynumber: 17.7 Consensus size: 42
719731 TCCTACCCTC
* *
719741 AGTCTGCTTGTCGGCTTTGACCTTGGAGACTGTCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* * * * **
719783 AGTTTGCCTGTCGGCTTTAA-GTCTGGAGACTTTC-CTACCTTC
1 AGTCTGCCTGTCGGCTTTAACCT-TGGAGACTGTCTC-ATCTAA
* *
719825 AGTCTGCCTGTCGGCTTTGACCTTGGAGACTGCCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
** * * * *
719867 AGTCTGCCTGTCGGCTTTGTCCTTAGAGACTTTC-CTACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTC-A-TCTAA
* * * ** * * **
719909 AGTCTACCTATTGGCTTTGTCCCTAGAGACTACCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* ** * * * *
719951 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTTTC-CTACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTC-A-TCTAA
* * ** * * **
719993 AGTCTACCTGTTGGCTTTGTCCCTAGAGACTACCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* ** * * * *
720035 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTTTC-CTACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTC-A-TCTAA
* * * * *
720077 AGTCTGCTTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* * * * * * *
720119 AGTCTGCCTGTCAGCTTTAACCCTGAAGACTTTCCCACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCA-TCTAA
* * * **
720161 AGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* *** * * * *
720203 AGTCT-CTTGTCGGCTTTCTTCTTAGAGACTTTC-CTACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTC-A-TCTAA
* * *
720244 AGTCTGCCTGTTGACTTTAACCTTGGAGACTGCCTCATCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
* * * * * * * * * *
720286 AGTCTACCTATCAGCTTTGACCCTAGAGACTTTCTTACCCT-C
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCA-TCTAA
* * * * **
720328 AGTCTGCCTGTCGGCTTTGACCCTAGAGACT-TTTCCATCTTTT
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCT-CATC-TAA
* * * * * *
720371 TGTTTACCTGTCGGCTTTGACCTTGGAGGCT-TCCTTTATCCTAA
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGT-C-TCAT-CTAA
* * * *
720415 AGTCTGCCTATCGGCTTTGACCTTGGAGACAT-TC-CTACCT-T
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGAC-TGTCTC-ATCTAA
* *
720456 AGTCTGCCTGTCGGCTTTGACCCTGGAGACT
1 AGTCTGCCTGTCGGCTTTAACCTTGGAGACT
720487 TTTTTCACCT
Statistics
Matches: 530, Mismatches: 142, Indels: 66
0.72 0.19 0.09
Matches are distributed among these distances:
40 2 0.00
41 73 0.14
42 379 0.72
43 43 0.08
44 29 0.05
45 4 0.01
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.34
Consensus pattern (42 bp):
AGTCTGCCTGTCGGCTTTAACCTTGGAGACTGTCTCATCTAA
Found at i:720011 original size:168 final size:168
Alignment explanation
Indices: 719727--720488 Score: 895
Period size: 168 Copynumber: 4.5 Consensus size: 168
719717 AACCATATGA
* * * * *
719727 ACTTTCCTACCCTCAGTCTGCTTGTCGGCTTTGACCTTGGAGACTGTCTCATCTAAAGTTTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* * ** * * * *
719792 GTCGGCTTTAAGTCTGGAGACTTTCCTACCTTCAGTCTGCCTGTCGGCTTTGACCTTGGAGACTG
66 GTCAGCTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
719857 CCTCATCTAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
131 CCTCATCTAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
* * * * *
719895 ACTTTCCTACCCTCAGTCTACCTATTGGCTTTGTCCCTAGAGACTACCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* * * *
719960 GTCAGCTTTGTCCCTGGAGACTTTCCTACCCTCAGTCTACCTGTTGGCTTTGTCCCTAGAGACTA
66 GTCAGCTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
* * *
720025 CCTCATCTAAAGTCTGCCTGTCAGCTTTGTCCCTGGAG
131 CCTCATCTAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
*
720063 ACTTTCCTACCCTCAGTCTGCTTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* * *
720128 GTCAGCTTTAACCCTGAAGACTTTCCCACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
66 GTCAGCTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
* * *
720193 CCTCATCTAAAGTCT-CTTGTCGGCTTTCTTCTTAGAG
131 CCTCATCTAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
* * * * * *
720230 ACTTTCCTACCCTCAGTCTGCCTGTTGACTTTAACCTTGGAGACTGCCTCATCTAAAGTCTACCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* * *
720295 ATCAGCTTTGACCCTAGAGACTTTCTTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACT-
66 GTCAGCTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
** *** * * * *
720359 TTTCCATCTTTTTGTTTACCTGTCGGCTTTGACCTTGGAG
131 CCT-CATC-TAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
* * * * * * * * *
720399 GC-TTCCTTTATCCTAAAGTCTGCCTATCGGCTTTGACCTTGGAGACATTCCT-ACCT-TAGTCT
1 ACTTTCC--TACCCT-CAGTCTGCCTGTCGGCTTTGACCCTAGAGAC-TGCCTCATCTAAAGTCT
*
720461 GCCTGTCGGCTTTGACCCTGGAGACTTT
62 GCCTGTCAGCTTTGACCCTGGAGACTTT
720489 TTTCACCTTT
Statistics
Matches: 505, Mismatches: 82, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
166 1 0.00
167 136 0.27
168 283 0.56
169 18 0.04
170 34 0.07
171 29 0.06
172 4 0.01
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.34
Consensus pattern (168 bp):
ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
GTCAGCTTTGACCCTGGAGACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTA
CCTCATCTAAAGTCTGCCTGTCGGCTTTGTCCTTAGAG
Found at i:720367 original size:84 final size:84
Alignment explanation
Indices: 719727--720358 Score: 831
Period size: 84 Copynumber: 7.5 Consensus size: 84
719717 AACCATATGA
* * * * *
719727 ACTTTCCTACCCTCAGTCTGCTTGTCGGCTTTGACCTTGGAGACTGTCTCATCTAAAGTTTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* *
719792 GTCGGCTTTAAGT--CTGGAG
66 GTCAGCTTT--GTCCCTAGAG
* * *
719811 ACTTTCCTACCTTCAGTCTGCCTGTCGGCTTTGACCTTGGAGACTGCCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* *
719876 GTCGGCTTTGTCCTTAGAG
66 GTCAGCTTTGTCCCTAGAG
* * * * *
719895 ACTTTCCTACCCTCAGTCTACCTATTGGCTTTGTCCCTAGAGACTACCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
*
719960 GTCAGCTTTGTCCCTGGAG
66 GTCAGCTTTGTCCCTAGAG
* * * *
719979 ACTTTCCTACCCTCAGTCTACCTGTTGGCTTTGTCCCTAGAGACTACCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
*
720044 GTCAGCTTTGTCCCTGGAG
66 GTCAGCTTTGTCCCTAGAG
*
720063 ACTTTCCTACCCTCAGTCTGCTTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
**
720128 GTCAGCTTTAACCCT-GAAG
66 GTCAGCTTTGTCCCTAG-AG
* * *
720147 ACTTTCCCACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTACCTCATCTAAAGTCT-CTT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* * * *
720211 GTCGGCTTTCTTCTTAGAG
66 GTCAGCTTTGTCCCTAGAG
* * * * * *
720230 ACTTTCCTACCCTCAGTCTGCCTGTTGACTTTAACCTTGGAGACTGCCTCATCTAAAGTCTACCT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
* *
720295 ATCAGCTTTGACCCTAGAG
66 GTCAGCTTTGTCCCTAGAG
*
720314 ACTTTCTTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACT
1 ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACT
720359 TTTCCATCTT
Statistics
Matches: 489, Mismatches: 54, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
82 2 0.00
83 69 0.14
84 418 0.85
ACGTcount: A:0.17, C:0.31, G:0.18, T:0.33
Consensus pattern (84 bp):
ACTTTCCTACCCTCAGTCTGCCTGTCGGCTTTGACCCTAGAGACTGCCTCATCTAAAGTCTGCCT
GTCAGCTTTGTCCCTAGAG
Found at i:720519 original size:129 final size:129
Alignment explanation
Indices: 720282--720521 Score: 329
Period size: 129 Copynumber: 1.9 Consensus size: 129
720272 ACTGCCTCAT
* *
720282 CTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTTTCTTACCCTCAGTCTGCCTGTCGGCTTTG
1 CTAAAGTCTACCTATCAGCTTTGACCCTAGAGACATTCCTACCCTCAGTCTGCCTGTCGGCTTTG
* * *
720347 ACCCTAGAGACTTTTCCATCTTTTTGTTTACCTGTCGGCTTTGACCTTGGAGGCTTCCTTTATC
66 ACCCTAGAGACTTTTCCACCTTTTTGTCTACCCGTCGGCTTTGACCTTGGAGGCTTCCTTTATC
* * * * *
720411 CTAAAGTCTGCCTATCGGCTTTGACCTTGGAGACATTCCTA-CCTTAGTCTGCCTGTCGGCTTTG
1 CTAAAGTCTACCTATCAGCTTTGACCCTAGAGACATTCCTACCCTCAGTCTGCCTGTCGGCTTTG
* * * * *
720475 ACCCTGGAGACTTTTTTCACCTTTTTGTCTGCCCGTTGGTTTTGACC
66 ACCCTAGAGAC-TTTTCCACCTTTTTGTCTACCCGTCGGCTTTGACC
720522 CGGGAGAATC
Statistics
Matches: 95, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
128 32 0.34
129 63 0.66
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.38
Consensus pattern (129 bp):
CTAAAGTCTACCTATCAGCTTTGACCCTAGAGACATTCCTACCCTCAGTCTGCCTGTCGGCTTTG
ACCCTAGAGACTTTTCCACCTTTTTGTCTACCCGTCGGCTTTGACCTTGGAGGCTTCCTTTATC
Found at i:721042 original size:16 final size:16
Alignment explanation
Indices: 720994--721068 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
720984 TAATAAGTAG
720994 AAATCAAAAATTAAAA
1 AAATCAAAAATTAAAA
* *
721010 AAAT-AAAATTTTAAA
1 AAATCAAAAATTAAAA
*
721025 AAATTAAAAA--AATCAA
1 AAATCAAAAATTAA--AA
*
721041 AAATCAAAGAAATAAAA
1 AAATCAAA-AATTAAAA
721058 AAATTCAAAAA
1 AAA-TCAAAAA
721069 AAATGTGAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
14 1 0.02
15 13 0.28
16 17 0.36
17 9 0.19
18 5 0.11
19 2 0.04
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.20
Consensus pattern (16 bp):
AAATCAAAAATTAAAA
Found at i:721168 original size:23 final size:23
Alignment explanation
Indices: 721142--721209 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
721132 CTTATTTTCT
721142 TTCATGTTTCATGCATGCATATG
1 TTCATGTTTCATGCATGCATATG
721165 TTCA--TTTCATGC-T---TACT-
1 TTCATGTTTCATGCATGCATA-TG
*
721182 TTCTTGTTTCATGCATGCATATG
1 TTCATGTTTCATGCATGCATATG
721205 TTCAT
1 TTCAT
721210 TGAATTGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 16
0.66 0.04 0.30
Matches are distributed among these distances:
17 5 0.14
18 1 0.03
19 8 0.23
20 2 0.06
21 8 0.23
22 1 0.03
23 10 0.29
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (23 bp):
TTCATGTTTCATGCATGCATATG
Found at i:721232 original size:40 final size:39
Alignment explanation
Indices: 721148--721244 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 39
721138 TTCTTTCATG
** *
721148 TTTCATGCATGCATATGTTCATTTCATGCTTACTTTCTTG
1 TTTCATGCATGCATATGTTCATTGAATGCTTACTTTC-TA
*
721188 TTTCATGCATGCATATGTTCATTGAATTGCATTGCTTTC-A
1 TTTCATGCATGCATATGTTCATTGAA-TGC-TTACTTTCTA
*
721228 TTTCATGCATTCATATG
1 TTTCATGCATGCATATG
721245 CAAATGAAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 40 0.80
41 3 0.06
42 7 0.14
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (39 bp):
TTTCATGCATGCATATGTTCATTGAATGCTTACTTTCTA
Found at i:721487 original size:45 final size:45
Alignment explanation
Indices: 721436--721560 Score: 232
Period size: 45 Copynumber: 2.8 Consensus size: 45
721426 CAGCAATGAT
721436 GAAGACAAAGCAACGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
1 GAAGACAAAGCAACGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
*
721481 GAAGACAAAGCAACGTGGAACAGCAAAGCAACAACGAAGAAAGTG
1 GAAGACAAAGCAACGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
*
721526 GAAGACAAAGCAATGTGGAACAGCAAAGCAACAAG
1 GAAGACAAAGCAACGTGGAACAGCAAAGCAACAAG
721561 TTGAAAAATG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.51, C:0.17, G:0.27, T:0.05
Consensus pattern (45 bp):
GAAGACAAAGCAACGTGGAACAGCAAAGCAACAAGGAAGAAAGTG
Found at i:721853 original size:31 final size:31
Alignment explanation
Indices: 721813--721888 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
721803 CCAACAGCTC
* * * *
721813 CAGCTCCCACAGCAATTTTCAGCAGCTCCAG
1 CAGCTCCCACAGCAACTTCCAACAACTCCAG
*
721844 CTGCTCCCACAGCAACTTCCAACAACTCCAG
1 CAGCTCCCACAGCAACTTCCAACAACTCCAG
721875 CAGCTCCCACAGCA
1 CAGCTCCCACAGCA
721889 GCCTCCAGCA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.43, G:0.13, T:0.16
Consensus pattern (31 bp):
CAGCTCCCACAGCAACTTCCAACAACTCCAG
Found at i:721917 original size:40 final size:40
Alignment explanation
Indices: 721873--721961 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
721863 CAACAACTCC
*
721873 AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAGCAACCACG
1 AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAACAACCACG
* * * * *
721913 AGCAGCTCCCATAGTAGCTTTCGGCAGCTCAACAACCACG
1 AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAACAACCACG
721953 AGCAGCTCC
1 AGCAGCTCC
721962 TGCAGTAGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.27, C:0.40, G:0.20, T:0.12
Consensus pattern (40 bp):
AGCAGCTCCCACAGCAGCCTCCAGCAGCTCAACAACCACG
Found at i:723860 original size:18 final size:18
Alignment explanation
Indices: 723837--723884 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
723827 CCTTAAACAG
723837 AAACCCATCATGCTTGTA
1 AAACCCATCATGCTTGTA
723855 AAACCCATCATGCTTGTA
1 AAACCCATCATGCTTGTA
723873 AAACCCATCATG
1 AAACCCATCATG
723885 AGCCCCCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.25
Consensus pattern (18 bp):
AAACCCATCATGCTTGTA
Found at i:727023 original size:9 final size:9
Alignment explanation
Indices: 727011--727080 Score: 50
Period size: 12 Copynumber: 6.8 Consensus size: 9
727001 CTCTCTCTAT
727011 TATCTCTCC
1 TATCTCTCC
727020 TATCTCTCCTCC
1 TA--TCT-CTCC
727032 TATCATCCATCC
1 TATC-T-C-TCC
*
727044 TATCTCTAC
1 TATCTCTCC
727053 TATCTCTCC
1 TATCTCTCC
727062 TATCGTCCCTCC
1 TATC-T--CTCC
727074 TATCTCT
1 TATCTCT
727081 TCTTTCTCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
9 18 0.35
10 4 0.08
11 8 0.16
12 21 0.41
ACGTcount: A:0.14, C:0.43, G:0.01, T:0.41
Consensus pattern (9 bp):
TATCTCTCC
Found at i:727038 original size:42 final size:43
Alignment explanation
Indices: 726983--727077 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 43
726973 TTTTTCTCTC
* * * *
726983 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATC-T
1 CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCGT
727025 CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCGT
1 CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCGT
727068 C-CCTCCTATC
1 CTCCTCCTATC
727078 TCTTCTTTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 46 0.96
43 2 0.04
ACGTcount: A:0.13, C:0.45, G:0.02, T:0.40
Consensus pattern (43 bp):
CTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTATCGT
Found at i:727064 original size:30 final size:30
Alignment explanation
Indices: 727028--727089 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
727018 CCTATCTCTC
727028 CTCCTATCATCCATCCTATCTCTACTATCT
1 CTCCTATCATCCATCCTATCTCTACTATCT
* * * *
727058 CTCCTATCGTCCCTCCTATCTCTTCTTTCT
1 CTCCTATCATCCATCCTATCTCTACTATCT
727088 CT
1 CT
727090 TTGAGGGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.13, C:0.42, G:0.02, T:0.44
Consensus pattern (30 bp):
CTCCTATCATCCATCCTATCTCTACTATCT
Found at i:728763 original size:31 final size:30
Alignment explanation
Indices: 728704--728775 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
728694 ATCACAACGA
728704 CAGCTTCAGCAGCTCCCACAACAACCTCCAG
1 CAGC-TCAGCAGCTCCCACAACAACCTCCAG
* * ** *
728735 TAGCTCCAGCAGCTCCTACAGTAGCCTCCAG
1 CAGCT-CAGCAGCTCCCACAACAACCTCCAG
728766 CAGCTCAGCA
1 CAGCTCAGCA
728776 ACCATCAGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.26, C:0.42, G:0.17, T:0.15
Consensus pattern (30 bp):
CAGCTCAGCAGCTCCCACAACAACCTCCAG
Found at i:728785 original size:40 final size:41
Alignment explanation
Indices: 728741--728817 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 41
728731 CCAGTAGCTC
* * *
728741 CAGCAGCTCCTACAGTAGCCTCCAGCAGCTC-AGCAACCAT
1 CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAACCAT
* *
728781 CAGCAGCTCCCACGGCAACTTCCAGCAGCTCGAGCAA
1 CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAA
728818 GGAAGAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
40 26 0.84
41 5 0.16
ACGTcount: A:0.27, C:0.40, G:0.19, T:0.13
Consensus pattern (41 bp):
CAGCAGCTCCCACAGCAACCTCCAGCAGCTCGAGCAACCAT
Found at i:729802 original size:3 final size:3
Alignment explanation
Indices: 729794--729819 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
729784 GATAAAACAA
729794 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
729820 AATGGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:733210 original size:12 final size:11
Alignment explanation
Indices: 733191--733257 Score: 75
Period size: 12 Copynumber: 5.9 Consensus size: 11
733181 AGAGAAAGAA
733191 GAGATAGGAGG
1 GAGATAGGAGG
733202 GATGATAGGAGG
1 GA-GATAGGAGG
*
733214 AGAGATAGTA--
1 -GAGATAGGAGG
733224 GAGATAGGAGG
1 GAGATAGGAGG
733235 GATGATAGGAGG
1 GA-GATAGGAGG
733247 AGAGATAGGAG
1 -GAGATAGGAG
733258 AGATAACAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
9 8 0.17
11 4 0.08
12 32 0.67
13 4 0.08
ACGTcount: A:0.39, C:0.00, G:0.48, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:733218 original size:33 final size:33
Alignment explanation
Indices: 733181--733262 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
733171 TAGCCCTCAA
*
733181 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGAAGAGATAGGAGGGATGATAGGAGG
*
733214 AGAGATAGTAGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGAAGAGATAGGAGGGATGATAGGAGG
*
733247 AGAGATAGGAGAGATA
1 AGAGATAGAAGAGATA
733263 ACAGAGAGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (33 bp):
AGAGATAGAAGAGATAGGAGGGATGATAGGAGG
Found at i:733258 original size:42 final size:42
Alignment explanation
Indices: 733211--733290 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
733201 GGATGATAGG
** * * *
733211 AGGAGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGAT
1 AGGAGAGATAACAGAGAGAGGAAGGATGACAGGAGGAGAGAT
733253 AGGAGAGATAACAGAGAGAGGAAGGATGACAGGAGGAG
1 AGGAGAGATAACAGAGAGAGGAAGGATGACAGGAGGAG
733291 GAGAGAAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.10
Consensus pattern (42 bp):
AGGAGAGATAACAGAGAGAGGAAGGATGACAGGAGGAGAGAT
Found at i:733274 original size:18 final size:18
Alignment explanation
Indices: 733247--733296 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
733237 TGATAGGAGG
*
733247 AGAGATAGGAGAGATAAC
1 AGAGAGAGGAGAGATAAC
*
733265 AGAGAGAGGA-AGGATGAC
1 AGAGAGAGGAGA-GATAAC
733283 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
733297 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 3 0.11
18 23 0.85
19 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.44, T:0.06
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAC
Found at i:747527 original size:22 final size:22
Alignment explanation
Indices: 747490--747535 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
747480 TTTTTTTTTA
747490 TTTTTTGTATTCTTTCTTCTTC
1 TTTTTTGTATTCTTTCTTCTTC
747512 TTTTTTCGTATT-TTTCTTCTTC
1 TTTTTT-GTATTCTTTCTTCTTC
747534 TT
1 TT
747536 CTTATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (22 bp):
TTTTTTGTATTCTTTCTTCTTC
Found at i:747535 original size:32 final size:31
Alignment explanation
Indices: 747477--747547 Score: 74
Period size: 32 Copynumber: 2.3 Consensus size: 31
747467 GCTAGTTTTT
** *
747477 TTCTTTTTTTTTATTTTTTGTATTCTTTCTTC
1 TTCTTTTTTCGTATTTTTTGTATTC-TTCTTA
*
747509 TTCTTTTTTCGTATTTTTCT-TCTTCTTCTTA
1 TTCTTTTTTCGTATTTTT-TGTATTCTTCTTA
747540 TT-TTTTTT
1 TTCTTTTTT
747548 GGTGAAAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
30 6 0.18
31 7 0.21
32 20 0.59
33 1 0.03
ACGTcount: A:0.06, C:0.14, G:0.03, T:0.77
Consensus pattern (31 bp):
TTCTTTTTTCGTATTTTTTGTATTCTTCTTA
Found at i:747547 original size:22 final size:22
Alignment explanation
Indices: 747472--747547 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 22
747462 CAAATGCTAG
*
747472 TTTTTTTCTT-TT-TTTTTATT
1 TTTTTTTCTTCTTCTTCTTATT
*
747492 TTTTGTATTCTTTCTTCTTCTTTTT
1 TTTT-T-TTC-TTCTTCTTCTTATT
747517 TCGTATTTTTCTTCTTCTTCTTATT
1 T--T-TTTTTCTTCTTCTTCTTATT
747542 TTTTTT
1 TTTTTT
747548 GGTGAAAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 7 0.16
23 3 0.07
24 2 0.04
25 21 0.47
26 3 0.07
27 2 0.04
28 2 0.04
ACGTcount: A:0.05, C:0.13, G:0.03, T:0.79
Consensus pattern (22 bp):
TTTTTTTCTTCTTCTTCTTATT
Found at i:748142 original size:44 final size:44
Alignment explanation
Indices: 748094--748177 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
748084 CAAACCCTAA
* * *
748094 TGGACTTATTGTGCTAATAGGCCCAATTCTTAATTAAACCTGAC
1 TGGACTTATTGTGCTAACAAGCCCAATTCTTAATCAAACCTGAC
*
748138 TGGACTTATTGTGCTAACAAGTCCAATTCTTAATCAAACC
1 TGGACTTATTGTGCTAACAAGCCCAATTCTTAATCAAACC
748178 AAAATAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (44 bp):
TGGACTTATTGTGCTAACAAGCCCAATTCTTAATCAAACCTGAC
Found at i:750506 original size:42 final size:42
Alignment explanation
Indices: 750451--750560 Score: 148
Period size: 42 Copynumber: 2.6 Consensus size: 42
750441 AAGAGAAAGA
* * *
750451 AGAGATAGGAGGGATGATATGAGGAGTGATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGAGATAAT
* * *
750493 AGCGATAGAAGGGATGATAAAAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGAGATAAT
* *
750535 AGAGAAAGGAGGGATGATAGGAGGAG
1 AGAGATAGGAGGGATGATAAGAGGAG
750561 GAGAGAAGAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.43, C:0.01, G:0.42, T:0.15
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAAGAGGAGAGATAGGAGAGATAAT
Found at i:751115 original size:42 final size:42
Alignment explanation
Indices: 751060--751220 Score: 259
Period size: 42 Copynumber: 3.8 Consensus size: 42
751050 TTCTTCTCTC
* * * *
751060 CTCCTCTTGTCATCCCTCCTTTCTCTATTATCTCTCTTATCT
1 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
*
751102 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
751144 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
751186 CTCCTCTTATCATCCCTCCTATCTCTCCTTTCTCT
1 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCT
751221 TTAAGGGCTA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 111 1.00
ACGTcount: A:0.12, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:751119 original size:12 final size:11
Alignment explanation
Indices: 751097--751210 Score: 82
Period size: 12 Copynumber: 10.5 Consensus size: 11
751087 TTATCTCTCT
751097 TATCTCTCCTCC
1 TATCTC-CCTCC
751109 TATCATCCCTCC
1 TATC-TCCCTCC
*
751121 TATCT--CTAC
1 TATCTCCCTCC
751130 TATCT--CTCC
1 TATCTCCCTCC
*
751139 TATCTCTCCTCT
1 TATCTC-CCTCC
751151 TATCATCCCTCC
1 TATC-TCCCTCC
*
751163 TATCT--CTAC
1 TATCTCCCTCC
751172 TATCT--CTCC
1 TATCTCCCTCC
*
751181 TATCTCTCCTCT
1 TATCTC-CCTCC
751193 TATCATCCCTCC
1 TATC-TCCCTCC
751205 TATCTC
1 TATCTC
751211 TCCTTTCTCT
Statistics
Matches: 85, Mismatches: 8, Indels: 19
0.76 0.07 0.17
Matches are distributed among these distances:
9 32 0.38
11 4 0.05
12 43 0.51
13 6 0.07
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (11 bp):
TATCTCCCTCC
Found at i:751188 original size:9 final size:9
Alignment explanation
Indices: 751088--751220 Score: 86
Period size: 9 Copynumber: 15.8 Consensus size: 9
751078 CTTTCTCTAT
*
751088 TATCTCTCT
1 TATCTCTCC
751097 TATCTCTCC
1 TATCTCTCC
* *
751106 T-CCTAT-C
1 TATCTCTCC
*
751113 -ATCCCTCC
1 TATCTCTCC
*
751121 TATCTCTAC
1 TATCTCTCC
751130 TATCTCTCC
1 TATCTCTCC
751139 TATCTCTCC
1 TATCTCTCC
* *
751148 TCT-TAT-C
1 TATCTCTCC
*
751155 -ATCCCTCC
1 TATCTCTCC
*
751163 TATCTCTAC
1 TATCTCTCC
751172 TATCTCTCC
1 TATCTCTCC
751181 TATCTCTCC
1 TATCTCTCC
* *
751190 TCT-TAT-C
1 TATCTCTCC
*
751197 -ATCCCTCC
1 TATCTCTCC
751205 TATCTCTCC
1 TATCTCTCC
*
751214 TTTCTCT
1 TATCTCT
751221 TTAAGGGCTA
Statistics
Matches: 91, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
6 2 0.02
7 7 0.08
8 10 0.11
9 72 0.79
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.44
Consensus pattern (9 bp):
TATCTCTCC
Found at i:754775 original size:20 final size:20
Alignment explanation
Indices: 754750--754795 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
754740 AACACTTACA
754750 AGGATTTCTTGAGTTTCTTG
1 AGGATTTCTTGAGTTTCTTG
754770 AGGATTTCTTGAGTTTCTTG
1 AGGATTTCTTGAGTTTCTTG
754790 AGGATT
1 AGGATT
754796 GCTTCTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (20 bp):
AGGATTTCTTGAGTTTCTTG
Found at i:754779 original size:11 final size:11
Alignment explanation
Indices: 754750--754795 Score: 64
Period size: 9 Copynumber: 4.5 Consensus size: 11
754740 AACACTTACA
754750 AGGATTTCTTG
1 AGGATTTCTTG
754761 A-G-TTTCTTG
1 AGGATTTCTTG
754770 AGGATTTCTTG
1 AGGATTTCTTG
754781 A-G-TTTCTTG
1 AGGATTTCTTG
754790 AGGATT
1 AGGATT
754796 GCTTCTCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 16 0.52
10 4 0.13
11 11 0.35
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (11 bp):
AGGATTTCTTG
Found at i:756610 original size:24 final size:24
Alignment explanation
Indices: 756583--756657 Score: 98
Period size: 24 Copynumber: 3.1 Consensus size: 24
756573 CTCTCGTATA
*
756583 TCTCCTCCTATCATCCTTTCTATC
1 TCTCCTCCTATCATCCCTTCTATC
*
756607 TCTCCTCCTATCA-CCCCTCTTATC
1 TCTCCTCCTATCATCCCTTC-TATC
* *
756631 TCTCCTCATATCATCCCTCCTATC
1 TCTCCTCCTATCATCCCTTCTATC
756655 TCT
1 TCT
756658 TTTTTGTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
23 4 0.09
24 36 0.82
25 4 0.09
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.41
Consensus pattern (24 bp):
TCTCCTCCTATCATCCCTTCTATC
Found at i:756617 original size:12 final size:12
Alignment explanation
Indices: 756583--756657 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
756573 CTCTCGTATA
756583 TCTCCTCCTATC
1 TCTCCTCCTATC
* *
756595 ATC-CTTTCTATC
1 -TCTCCTCCTATC
756607 TCTCCTCCTATC
1 TCTCCTCCTATC
* * *
756619 ACCCCTCTTATC
1 TCTCCTCCTATC
*
756631 TCTCCTCATATC
1 TCTCCTCCTATC
756643 ATC-CCTCCTATC
1 -TCTCCTCCTATC
756655 TCT
1 TCT
756658 TTTTTGTCTT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
11 4 0.08
12 40 0.83
13 4 0.08
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.41
Consensus pattern (12 bp):
TCTCCTCCTATC
Found at i:758384 original size:33 final size:33
Alignment explanation
Indices: 758329--758469 Score: 178
Period size: 33 Copynumber: 4.2 Consensus size: 33
758319 CAACTCATAC
*
758329 GGGCTTTTGGAAA-GGTTGCCACCAACTTGTGT
1 GGGCTTTTGAAAAGGGTTGCCACCAACTTGTGT
* *
758361 GGGCTTTTGAAAAGGGTTGCCACCCACTAATTTGTAT
1 GGGCTTTTGAAAAGGGTTGCCA--C-C-AACTTGTGT
* *
758398 AGGCTTTTG-GAAGGGTTGCCACCAACTTGTGT
1 GGGCTTTTGAAAAGGGTTGCCACCAACTTGTGT
*
758430 GGGCTTTTGAAAAGGGTTGCCACCAACTTATGT
1 GGGCTTTTGAAAAGGGTTGCCACCAACTTGTGT
758463 GGGCTTT
1 GGGCTTT
758470 AAGAGGTTTG
Statistics
Matches: 93, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
32 27 0.29
33 37 0.40
34 1 0.01
35 1 0.01
36 12 0.13
37 15 0.16
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (33 bp):
GGGCTTTTGAAAAGGGTTGCCACCAACTTGTGT
Found at i:758417 original size:36 final size:34
Alignment explanation
Indices: 758330--758453 Score: 112
Period size: 32 Copynumber: 3.6 Consensus size: 34
758320 AACTCATACG
* * *
758330 GGCTTTTGGAAAGGTTGCCA--CCAACTTGTGTG
1 GGCTTTTGGAAGGGTTGCCACCCCAACTTGTATA
* *
758362 GGCTTTTGAAAAGGGTTGCCACCCACTAATTTGTATA
1 GGCTTTTG-GAAGGGTTGCCACCC-C-AACTTGTATA
* *
758399 GGCTTTTGGAAGGGTTGCCA--CCAACTTGTGTG
1 GGCTTTTGGAAGGGTTGCCACCCCAACTTGTATA
*
758431 GGCTTTTGAAAAGGGTTGCCACC
1 GGCTTTTG-GAAGGGTTGCCACC
758454 AACTTATGTG
Statistics
Matches: 74, Mismatches: 10, Indels: 13
0.76 0.10 0.13
Matches are distributed among these distances:
32 23 0.31
33 22 0.30
34 1 0.01
35 1 0.01
36 12 0.16
37 15 0.20
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (34 bp):
GGCTTTTGGAAGGGTTGCCACCCCAACTTGTATA
Found at i:758562 original size:32 final size:30
Alignment explanation
Indices: 758516--758577 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
758506 TGGGTGTTGT
758516 CAACTCGTGCGGGCTTTTAAAAAGGTTGCCAC
1 CAACTCGTGCGGGC-TTTAAAAAGG-TGCCAC
* * *
758548 CAACTTGTGTGGGCTTTAAAATGGTGCCAC
1 CAACTCGTGCGGGCTTTAAAAAGGTGCCAC
758578 GGAGTTGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 6 0.22
31 9 0.33
32 12 0.44
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (30 bp):
CAACTCGTGCGGGCTTTAAAAAGGTGCCAC
Found at i:758645 original size:60 final size:59
Alignment explanation
Indices: 758555--758804 Score: 240
Period size: 60 Copynumber: 4.2 Consensus size: 59
758545 CACCAACTTG
* * * *
758555 TGTGGGCTTTA-AAATGGTGCCACGGAGTTGTGGACTTT-AAAAGGGGTGGCA-TGAAGT
1 TGTGGACTTTATAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGGTGGCACAG-AGT
* * *
758612 TGTGGACTTT-TGAAAAGGGTTGCCAGAGAGTTGTGGACTTTAGAAAAAGGGTGTCACAGAGT
1 TGTGGACTTTAT--AAAGGG-TGCCACAGAGTTGTGGACTTT-GAAAAGGGGTGGCACAGAGT
* ** *
758674 TGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTGAAGAAGGGGTCCCACAGAGA
1 TGTGGACTTTATAAAGGGTGCCACAGAGTTGTGGACTTTGAA-AAGGGGTGGCACAGAGT
* * * * *
758734 TGTGAACTTTA-AGAAGAGGTGCAACAGAGTTGTGGACTTTCAAGAATGGGTGCCACAGAGT
1 TGTGGACTTTATA-AAG-GGTGCCACAGAGTTGTGGACTTTGAA-AAGGGGTGGCACAGAGT
758795 TGTGGACTTT
1 TGTGGACTTT
758805 GAGAAGGGTA
Statistics
Matches: 161, Mismatches: 21, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
57 9 0.06
59 9 0.06
60 64 0.40
61 53 0.33
62 24 0.15
63 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.27
Consensus pattern (59 bp):
TGTGGACTTTATAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAGGGGTGGCACAGAGT
Found at i:758677 original size:91 final size:85
Alignment explanation
Indices: 758561--758813 Score: 247
Period size: 91 Copynumber: 2.8 Consensus size: 85
758551 CTTGTGTGGG
* * * *
758561 CTTT-AAAATGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGGCATGAAGTTGTGGACTTTTGA
1 CTTTAAAAAGGGTG-CACAGAGTTGTGGACTTTAAAA-GGGTGCCA-AAAGTTGTGGAC-TTTGA
* * * *
758625 AAAGGGTTGCCAGAGAGTTGTGGA
62 AAAGGGTTCCCACAGAGATGTGAA
758649 CTTTAGAAAAAGGGTGTCACAGAGTTGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTG
1 CTTT--AAAAAGGGTG-CACAGAGTTGTGGACTTTA-AAAGGGTGCCA-AAAGTTGTGGACTTTG
*
758714 AAGAAGGGGTCCCACAGAGATGTGAA
61 AA-AAGGGTTCCCACAGAGATGTGAA
* *
758740 CTTTAAGAAGAGGTGCAACAGAGTTGTGGACTTTCAAGAATGGGTGCCACAGAGTTGTGGACTTT
1 CTTTAAAAAG-GGTGC-ACAGAGTTGTGGACTTT-AA-AA-GGGTGCCA-AAAGTTGTGGACTTT
*
758805 GAGAAGGGT
60 GAAAAGGGT
758814 ACTCCACTGA
Statistics
Matches: 140, Mismatches: 15, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
88 4 0.03
89 6 0.04
90 28 0.20
91 74 0.53
92 28 0.20
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.26
Consensus pattern (85 bp):
CTTTAAAAAGGGTGCACAGAGTTGTGGACTTTAAAAGGGTGCCAAAAGTTGTGGACTTTGAAAAG
GGTTCCCACAGAGATGTGAA
Found at i:758748 original size:30 final size:30
Alignment explanation
Indices: 758570--758812 Score: 244
Period size: 31 Copynumber: 8.0 Consensus size: 30
758560 GCTTTAAAAT
*
758570 GGTGCCACGGAGTTGTGGACTTTAA-AAGG
1 GGTGCCACAGAGTTGTGGACTTTAAGAAGG
* *
758599 GGTGGCA-TGAAGTTGTGGACTTTTGAA-AAGG
1 GGTGCCACAG-AGTTGTGGAC-TTT-AAGAAGG
* * * *
758630 GTTGCCAGAGAGTTGTGGACTTTAGAAAAAG
1 GGTGCCACAGAGTTGTGGACTTTA-AGAAGG
*
758661 GGTGTCACAGAGTTGTGGACTTTATA-AA-G
1 GGTGCCACAGAGTTGTGGACTTTA-AGAAGG
*
758690 GGTGCCACAAAGTTGTGGACTTTGAAGAAGG
1 GGTGCCACAGAGTTGTGGACTTT-AAGAAGG
* * * *
758721 GGTCCCACAGAGATGTGAACTTTAAGAAGA
1 GGTGCCACAGAGTTGTGGACTTTAAGAAGG
* *
758751 GGTGCAACAGAGTTGTGGACTTTCAAGAATG
1 GGTGCCACAGAGTTGTGGACTTT-AAGAAGG
*
758782 GGTGCCACAGAGTTGTGGACTTTGAGAAGG
1 GGTGCCACAGAGTTGTGGACTTTAAGAAGG
758812 G
1 G
758813 TACTCCACTG
Statistics
Matches: 178, Mismatches: 26, Indels: 19
0.80 0.12 0.09
Matches are distributed among these distances:
28 1 0.01
29 40 0.22
30 43 0.24
31 93 0.52
32 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.35, T:0.25
Consensus pattern (30 bp):
GGTGCCACAGAGTTGTGGACTTTAAGAAGG
Found at i:758843 original size:22 final size:22
Alignment explanation
Indices: 758815--758859 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
758805 GAGAAGGGTA
758815 CTCCACTGAGGTGTCAAACACC
1 CTCCACTGAGGTGTCAAACACC
758837 CTCCACTGAGGTGTCAAACACC
1 CTCCACTGAGGTGTCAAACACC
758859 C
1 C
758860 CAGGGACTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.18
Consensus pattern (22 bp):
CTCCACTGAGGTGTCAAACACC
Found at i:765248 original size:96 final size:96
Alignment explanation
Indices: 765048--765273 Score: 292
Period size: 96 Copynumber: 2.3 Consensus size: 96
765038 AAATATGGCT
* * * * *
765048 GAGTATCCCCTTGAAGGAATGGGGTTGGAGTATCCCTAATGATGAGAGTTTAGGAAAAAATAAGA
1 GAGTATCCCCTCG-AGGAATGGGGTTGGAGTATCCCCAATGATGACAATTTAAGAAAAAATAAGA
765113 TTCAAAACTTGACAAGTTTAAAAACGGGATTG
65 TTCAAAACTTGACAAGTTTAAAAACGGGATTG
* *
765145 GAGTATCCCCTCAGAGGAATGGGGTTGGAGTATCCCCGATGATGACAATTTAAG-CAAAATAAGA
1 GAGTATCCCCTC-GAGGAATGGGGTTGGAGTATCCCCAATGATGACAATTTAAGAAAAAATAAGA
* * * * *
765209 TTTAAATCTTGATAAGTTTAAACATGGGATTG
65 TTCAAAACTTGACAAGTTTAAAAACGGGATTG
* *
765241 GAGTATCCTCTTCGAAGAATGGGGTTGGAGTAT
1 GAGTATCC-CCTCGAGGAATGGGGTTGGAGTAT
765274 TCTCGATAAA
Statistics
Matches: 113, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
96 63 0.56
97 49 0.43
98 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (96 bp):
GAGTATCCCCTCGAGGAATGGGGTTGGAGTATCCCCAATGATGACAATTTAAGAAAAAATAAGAT
TCAAAACTTGACAAGTTTAAAAACGGGATTG
Found at i:771359 original size:42 final size:42
Alignment explanation
Indices: 771304--771422 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
771294 TTCTTCTCTC
* *
771304 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
771346 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
771388 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
771423 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:771363 original size:12 final size:11
Alignment explanation
Indices: 771337--771412 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
771327 TCTATTATCT
*
771337 CTCCTGTCTCTC
1 CTCCTATCTC-C
771349 CTCCTATCATCC
1 CTCCTATC-TCC
771361 CTCCTATCT--
1 CTCCTATCTCC
*
771370 CTACTATCT--
1 CTCCTATCTCC
*
771379 CTCCTGTCTCTC
1 CTCCTATCTC-C
771391 CTCCTATCATCC
1 CTCCTATC-TCC
*
771403 CTCCTCTCTC
1 CTCCTATCTC
771413 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:771364 original size:24 final size:24
Alignment explanation
Indices: 771328--771413 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
771318 CCTCCTCTCT
* *
771328 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
771352 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
771373 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
771394 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
771414 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:771388 original size:18 final size:18
Alignment explanation
Indices: 771319--771389 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
771309 CCTGTCATCC
* *
771319 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
771337 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
771359 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
771379 CTCCTGTCTCT
1 CTCCTGTCTCT
771390 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:773886 original size:32 final size:32
Alignment explanation
Indices: 773817--773887 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
773807 CAAAATTGCC
* * * *
773817 TACATGTATCGATACATTGAAGAATTTATCAA
1 TACATTTATCGATACAGTGAAAAATATATCAA
* *
773849 TACATTTATCTATACAGTGAAAAATATATCGA
1 TACATTTATCGATACAGTGAAAAATATATCAA
773881 TACATTT
1 TACATTT
773888 TCTTTCTAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.37
Consensus pattern (32 bp):
TACATTTATCGATACAGTGAAAAATATATCAA
Found at i:775591 original size:97 final size:97
Alignment explanation
Indices: 775438--775613 Score: 280
Period size: 97 Copynumber: 1.8 Consensus size: 97
775428 TTGTGCGGGT
*
775438 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGTTTTTTAGGTGTAGCCAGCTCATGCAGGC
1 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
775503 TTTGAGAAAGGATGTCACTAGCTCGTGTAGGC
66 TTTGAGAAAGGATGTCACTAGCTCGTGTAGGC
* * * * * * *
775535 TTTTGGAAAGTTTTTAGTGCCACCAGCTTGTGTGGGCTTTTTAGGTGTTGCTAGCTCGTGCGGGC
1 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
775600 TTTGAGAAAGGATG
66 TTTGAGAAAGGATG
775614 CCATCAACTC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 71 1.00
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.34
Consensus pattern (97 bp):
TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
TTTGAGAAAGGATGTCACTAGCTCGTGTAGGC
Found at i:775633 original size:97 final size:97
Alignment explanation
Indices: 775438--775637 Score: 276
Period size: 97 Copynumber: 2.1 Consensus size: 97
775428 TTGTGCGGGT
*
775438 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGTTTTTTAGGTGTAGCCAGCTCATGCAGGC
1 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
* * *
775503 TTTGAGAAAGGATGTCACTAGCTCGTGTAGGC
66 TTTGAGAAAGGATGCCACTAACTCATGTAGGC
* * * * * * *
775535 TTTTGGAAAGTTTTTAGTGCCACCAGCTTGTGTGGGCTTTTTAGGTGTTGCTAGCTCGTGCGGGC
1 TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
*
775600 TTTGAGAAAGGATGCCA-TCAACTCATGTGGGC
66 TTTGAGAAAGGATGCCACT-AACTCATGTAGGC
775632 TTTTGG
1 TTTTGG
775638 GTTACTCCAT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
96 1 0.01
97 89 0.99
ACGTcount: A:0.18, C:0.17, G:0.31, T:0.34
Consensus pattern (97 bp):
TTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGGGCTTTTTAGGTGTAGCCAGCTCATGCAGGC
TTTGAGAAAGGATGCCACTAACTCATGTAGGC
Found at i:790322 original size:79 final size:80
Alignment explanation
Indices: 790238--790522 Score: 310
Period size: 78 Copynumber: 3.6 Consensus size: 80
790228 CAAAAATTGA
* ** ** *
790238 GGTTGGAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCGA-GATGAAAAATTTAATATTA
1 GGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
*
790302 TGGAAGAAAAAATGG
66 TGGAAGAAAAAACGG
* * * *
790317 GGTTGGAGTATTCCCTCAAAAATTATGGGGTTGG-GTATCCCCGATGGTGAAAAA-TCGATATTT
1 GGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
790380 TGGAA-ATAAAAACGG
66 TGGAAGA-AAAAACGG
* * * *
790395 AGTTGGAGTATCCTCT-AGGAAATAATGGGGTTGGAGTATCCCCGATAATGAAAAATTCGATGCT
1 GGTTGGAGTATCCCCTCA-GAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGAT-AT
* *
790459 TTTGGAAGCAAAAACAG
64 TTTGGAAGAAAAAACGG
** * * *
790476 GGTTGGAGTATCCTTTAAGAAATAATGGGGTTGCAGTATCTCCGATG
1 GGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCGATG
790523 GTAAAAAAAA
Statistics
Matches: 173, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
77 2 0.01
78 55 0.32
79 55 0.32
80 5 0.03
81 55 0.32
82 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (80 bp):
GGTTGGAGTATCCCCTCAGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
TGGAAGAAAAAACGG
Found at i:790402 original size:78 final size:77
Alignment explanation
Indices: 790238--790522 Score: 272
Period size: 79 Copynumber: 3.6 Consensus size: 77
790228 CAAAAATTGA
* * ** ** *
790238 GGTTGGAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCGA-GATGAAAAATTTAATATTA
1 GGTTGGAGTAT-CCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
*
790302 TGGAAGAAAAAATGG
65 TGGAA-AAAAAA-CG
* *
790317 GGTTGGAGTATTCCCTCAAAAATTATGGGGTTGG-GTATCCCCGATGGTGAAAAA-TCGATATTT
1 GGTTGGAGTA-TCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
790380 TGGAAATAAAAACG
65 TGGAAA-AAAAACG
* * *
790394 GAGTTGGAGTAT-CCTCTAGGAAATAATGGGGTTGGAGTATCCCCGATAATGAAAAATTCGATGC
1 G-GTTGGAGTATCCCTC-A-AAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGAT-A
*
790458 TTTTGGAAGCAAAAACAG
62 TTTTGGAA-AAAAAAC-G
* * * *
790476 GGTTGGAGTATCCTTTAAGAAATAATGGGGTTGCAGTATCTCCGATG
1 GGTTGGAGTATCCCTCAA-AAATAATGGGGTTGGAGTATCCCCGATG
790523 GTAAAAAAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
76 4 0.02
77 5 0.03
78 49 0.28
79 54 0.31
80 6 0.03
81 50 0.29
82 4 0.02
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (77 bp):
GGTTGGAGTATCCCTCAAAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTTT
GGAAAAAAAACG
Found at i:790482 original size:81 final size:78
Alignment explanation
Indices: 790238--790522 Score: 292
Period size: 81 Copynumber: 3.6 Consensus size: 78
790228 CAAAAATTGA
* * ** ** *
790238 GGTTGGAGTATCCCCTCAGAGATGGTGGGGTTGGAGTATCCCCGA-GATGAAAAATTTAATATTA
1 GGTTGGAGTATCCTCT-AGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTT
*
790302 TGGAAGAAAAAATGG
65 TGGAAGAAAAAA-CG
* * *
790317 GGTTGGAGTATTCC-CTCAAAAATTATGGGGTTGG-GTATCCCCGATGGTGAAAAA-TCGATATT
1 GGTTGGAGTA-TCCTCT-AGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATT
790379 TTGGAA-ATAAAAACG
64 TTGGAAGA-AAAAACG
* *
790394 GAGTTGGAGTATCCTCTAGGAAATAATGGGGTTGGAGTATCCCCGATAATGAAAAATTCGATGCT
1 G-GTTGGAGTATCCTCTA-GAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGAT-AT
*
790459 TTTGGAAGCAAAAACAG
63 TTTGGAAGAAAAAAC-G
* * *
790476 GGTTGGAGTATCCTTTAAGAAATAATGGGGTTGCAGTATCTCCGATG
1 GGTTGGAGTATCCTCT-AGAAATAATGGGGTTGGAGTATCCCCGATG
790523 GTAAAAAAAA
Statistics
Matches: 175, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
77 7 0.04
78 51 0.29
79 52 0.30
80 8 0.05
81 54 0.31
82 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (78 bp):
GGTTGGAGTATCCTCTAGAAATAATGGGGTTGGAGTATCCCCGATGATGAAAAATTCGATATTTT
GGAAGAAAAAACG
Found at i:793020 original size:51 final size:52
Alignment explanation
Indices: 792920--793039 Score: 170
Period size: 51 Copynumber: 2.3 Consensus size: 52
792910 TACATTCTTC
*
792920 AATGTATCGATACATTTAGGTCAAAACCCTAGAATGTATCGAAACAATGAAT
1 AATGTATCGATACATTTAGGTCAAAACCCTAGAATGTATCGAAACAATGAAA
* * * *
792972 AATGTATCGATAAATTTGGGTTAAAACCC-AGAATGTATCGATACAATGAAA
1 AATGTATCGATACATTTAGGTCAAAACCCTAGAATGTATCGAAACAATGAAA
* *
793023 AATATGTCGATACATTT
1 AATGTATCGATACATTT
793040 TCTTTTCAGA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
51 34 0.57
52 26 0.43
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (52 bp):
AATGTATCGATACATTTAGGTCAAAACCCTAGAATGTATCGAAACAATGAAA
Found at i:794833 original size:155 final size:153
Alignment explanation
Indices: 794604--794979 Score: 431
Period size: 155 Copynumber: 2.4 Consensus size: 153
794594 TAGGAGTTGG
* * * *
794604 TTCTAAAAAATAACGAAAATTCCCCTAAGG-GATACCTTCGACGTAAAAGTACTTGATACCCTTA
1 TTCTAAAAAATTACCAAAA-TACCCT-AGGAGATACCTTCGACGTAAAAGTACCTGATACCCTTA
* *
794668 AAGGACTT-AAAAAGGATTTT-AAATGGGATGAACCTAT-ATAAAATGCCTACCTTCGGCATAAA
64 AAAGACTTAAAAAAGG-TTTTGAAA-GGGATGAACCGATCAT-AAATGCCTACCTTCGGCATAAA
* * **
794730 AGCAGACCCAGTGATAACCTAATACTTGA
126 AGCAG-CCCAGTGACAACCTAAGACTCAA
*
794759 TTCTAAAAAATTACCAAAATACCTCTAGGAGATACCTTCGACGTCAAAA-TACCTGATACCCCTA
1 TTCTAAAAAATTACCAAAATACC-CTAGGAGATACCTTCGACGT-AAAAGTACCTGATACCCTTA
* * *
794823 AAAGATTTAAAAAAAGGTTTTGAAAGGGATGAACCGATCCTAAATGCCTACCTTTGGCATAAAAG
64 AAAGACTT-AAAAAAGGTTTTGAAAGGGATGAACCGATCATAAATGCCTACCTTCGGCATAAAAG
* *
794888 CAGCCCGGTGACAACCTAGGACTCAA
128 CAGCCCAGTGACAACCTAAGACTCAA
* * * *
794914 TTTTAAAAAATTATCAAAATATCCCAAGGAGATACCTTCGATGTAAAAGTATCC-GATACCCTTA
1 TTCTAAAAAATTACCAAAATA-CCCTAGGAGATACCTTCGACGTAAAAGTA-CCTGATACCCTTA
794978 AA
64 AA
794980 GGACACTAAA
Statistics
Matches: 190, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
154 10 0.05
155 119 0.63
156 50 0.26
157 11 0.06
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (153 bp):
TTCTAAAAAATTACCAAAATACCCTAGGAGATACCTTCGACGTAAAAGTACCTGATACCCTTAAA
AGACTTAAAAAAGGTTTTGAAAGGGATGAACCGATCATAAATGCCTACCTTCGGCATAAAAGCAG
CCCAGTGACAACCTAAGACTCAA
Found at i:796935 original size:168 final size:166
Alignment explanation
Indices: 796730--797079 Score: 375
Period size: 166 Copynumber: 2.1 Consensus size: 166
796720 TCAAATGATG
* * * * *
796730 ATATTTAATGAATTTTAAAAATTGAAAACTGAGAAAAATCTCCT-TGAAAAAATTTACGGAGTAG
1 ATATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATC-CCTCCGAAAAAATTTACGGAGTAA
*** * *
796794 AAAACTCCATATTTTGGAAACAAGAGAATTTCAAGGAAAAAAAATCAAAAACTAATGAAGATGAA
65 AAAACTCCATATTTCAAAAAAAAG-GAATTTCAAGG-AAAAAAATCAAAAACTAATGAAAATGAA
* *
796859 CAACTTTTTGAAAAATGATTTAAT-GTAAGATAAATAATA
128 CAACTTTTTCAAAAATGATTTAATGGGAA-ATAAATAATA
* *
796898 ATATTTGATAAATTTTAAAAATTAAAAAACT-AGAAAAATCCCTCCGAAAACATTTATGGAGTAA
1 ATATTTGATAAATTTTAAAAATT-AAAAACTGAGAAAAATCCCTCCGAAAAAATTTACGGAGTAA
* * * * * * * **
796962 AAAATTTCGTATTTCAAAAAAAAGGAGTTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAATG
65 AAAACTCCATATTTCAAAAAAAAGGAATTTCAAGGAAAAAAATCAAAAACTAATGAAAATGAACA
* * * *
797027 ACTTTTTCAAAACTGATTTGATGGGAATTAAATGATA
130 ACTTTTTCAAAAATGATTTAATGGGAAATAAATAATA
797064 ATATTTGA-AGAATTTT
1 ATATTTGATA-AATTTT
797080 GATGTTTGAA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
165 1 0.01
166 65 0.43
167 16 0.11
168 63 0.42
169 6 0.04
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (166 bp):
ATATTTGATAAATTTTAAAAATTAAAAACTGAGAAAAATCCCTCCGAAAAAATTTACGGAGTAAA
AAACTCCATATTTCAAAAAAAAGGAATTTCAAGGAAAAAAATCAAAAACTAATGAAAATGAACAA
CTTTTTCAAAAATGATTTAATGGGAAATAAATAATA
Found at i:798193 original size:60 final size:60
Alignment explanation
Indices: 798051--798344 Score: 312
Period size: 60 Copynumber: 5.0 Consensus size: 60
798041 AATCAAGCGA
* * *
798051 GGTAAGATTTGATCAAGT--AGTCAAATGAAGAAAAACTTGACTGAAT--AGTC-AAGCAG
1 GGTAAGATTTGATCGAGTACAGTCAAATGAAGAAAGACTTGACCGAATACAGTCGAA-CAG
* * * * * *
798107 GGTAAGATTTGATCAAGTATAGTCAAATGAAGAAAGATTTAACCGAATACAGTGGAACAA
1 GGTAAGATTTGATCGAGTACAGTCAAATGAAGAAAGACTTGACCGAATACAGTCGAACAG
* * * * *
798167 GGTAAGATTTGATCGAGTACAGTCAAATGAGGAAAGACTTCACTGAATACAGTCTAACTG
1 GGTAAGATTTGATCGAGTACAGTCAAATGAAGAAAGACTTGACCGAATACAGTCGAACAG
* * * * * *
798227 GGTAAGATTTGATCGAGTACAATCAACTGAAGAAAAACTTGACCAAATACAATTGAACAG
1 GGTAAGATTTGATCGAGTACAGTCAAATGAAGAAAGACTTGACCGAATACAGTCGAACAG
* * * *
798287 GGAAAAATTTGATCGAGTGCAGTCAAATG-AGAAAAGACTTGACCGAATATAGTCGAAC
1 GGTAAGATTTGATCGAGTACAGTCAAATGAAG-AAAGACTTGACCGAATACAGTCGAAC
798345 TGGTTAAATG
Statistics
Matches: 195, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
56 18 0.09
58 24 0.12
59 2 0.01
60 149 0.76
61 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (60 bp):
GGTAAGATTTGATCGAGTACAGTCAAATGAAGAAAGACTTGACCGAATACAGTCGAACAG
Found at i:802589 original size:25 final size:26
Alignment explanation
Indices: 802561--802610 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
802551 AAGGGATCAT
*
802561 AATGAAA-TAATATCAAGTCAAAACC
1 AATGAAACCAATATCAAGTCAAAACC
* *
802586 AATGAAACCAATGTCGAGTCAAAAC
1 AATGAAACCAATATCAAGTCAAAAC
802611 ATAATTAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (26 bp):
AATGAAACCAATATCAAGTCAAAACC
Found at i:807742 original size:15 final size:15
Alignment explanation
Indices: 807722--807766 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
807712 ATTCCACCAA
807722 ATCCACCACAAAATC
1 ATCCACCACAAAATC
** *
807737 ATCCACCACCTAATT
1 ATCCACCACAAAATC
*
807752 ACCCACCACAAAATC
1 ATCCACCACAAAATC
807767 GTCGATACAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16
Consensus pattern (15 bp):
ATCCACCACAAAATC
Found at i:813746 original size:18 final size:18
Alignment explanation
Indices: 813725--813759 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
813715 CGTCCTTCTT
813725 AAAAAA-AACAAAACAAAG
1 AAAAAACAA-AAAACAAAG
813743 AAAAAACAAAAAACAAA
1 AAAAAACAAAAAACAAA
813760 AACCTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAAACAAAAAACAAAG
Found at i:814924 original size:25 final size:27
Alignment explanation
Indices: 814884--814934 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
814874 ATTACATCAT
*
814884 AAACTTTTGTCGAG-AATGTTCGTTAG
1 AAACTTTTGTCAAGAAATGTTCGTTAG
*
814910 AAAC-TTTGTCAAGAAATTTTCGTTA
1 AAACTTTTGTCAAGAAATGTTCGTTA
814935 ATACGACCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (27 bp):
AAACTTTTGTCAAGAAATGTTCGTTAG
Found at i:814988 original size:28 final size:27
Alignment explanation
Indices: 814957--816309 Score: 1255
Period size: 28 Copynumber: 48.1 Consensus size: 27
814947 TTCAAAAGTT
814957 CACAAGTCAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
814985 CACAAGTCAATGGCAACCCTTTTCAAAGTC
1 CACAAGTCAGTGGC-A-CC-TTTCAAAGCC
*
815015 CGCAAGTCAGTGGCACCTTTCAAAGCC
1 CACAAGTCAGTGGCACCTTTCAAAGCC
*
815042 CACAAGTTAGTGGCACCTTTTTCAAAGCC
1 CACAAGTCAGTGGCACC--TTTCAAAGCC
*
815071 CACAAGTCAGTGGCACCCTTCAAAGCC
1 CACAAGTCAGTGGCACCTTTCAAAGCC
*
815098 CACAAGTCAATGGCACAC-TTCAAAGCC
1 CACAAGTCAGTGGCAC-CTTTCAAAGCC
*
815125 CACAAGTTAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
*
815153 CACAAGTCAGTGGCATCTCTTCAAAGCC
1 CACAAGTCAGTGGCACCT-TTCAAAGCC
* *
815181 CACAAGTTAGTGGCACCCTTCAGAA-CC
1 CACAAGTCAGTGGCACCTTTCA-AAGCC
* *
815208 CATAAGTCAGTGGCACCTTGT-AAAACC
1 CACAAGTCAGTGGCACCTT-TCAAAGCC
** * * * *
815235 CATGAGTCAATGACATCTTTTCAAAGAC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815263 CACAAGTAAGT-GCATCTTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815290 CACAAGTTAATGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815318 CACAAGTTAGTGG-ACCCTTCGAAAGCC
1 CACAAGTCAGTGGCACCTTTC-AAAGCC
815345 CACAAGTCAGTGGCACCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815373 CACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
815401 CACAAGTCAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* * *
815429 CACAAGTTAGTGGCACCCTTT-GAA-CT
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
815455 CACAAGTCAGTGGCACCCGTTTCAAAGCC
1 CACAAGTCAGTGGCA-CC-TTTCAAAGCC
** * *
815484 CATGAGTTAGTGGCACCTTTTCAAAGGC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
815512 CACAAGTCAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815540 CACAAGTTAGTGGCACCCTTTCAAAGCT
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
*
815568 CACAAGTTAGTGGCACCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* ** * *
815596 AATGAGTTAGTGGCACCTTTTCAAAGGC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
815624 CACAAGTCAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* * **
815652 CACAAGTTAGTGGCACCCTTTGAAAGTG
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815680 TACAAGTTAGTGGCACCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815708 CACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
* *
815736 CACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
* *
815764 CACGAGTAAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
*
815792 CACAAGTCAGTGGCATCCTTTCAAAGTC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* * *
815820 CATAAGTTAGTGGCACCCTTTGAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
**
815848 CACAAGTCAGTGGCACCCTTTGGAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
**
815876 CATGAGTCAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
** * *
815904 CATGAGTCAGTGGCATCTTTTCAAAAACC
1 CACAAGTCAGTGGCA-CCTTTC-AAAGCC
* *
815933 CACGAGTCAGTGGCACCCGTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
815961 CACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
** * *
815989 CATGAGTCAGTGGCATCTTTTCAAAAACC
1 CACAAGTCAGTGGCA-CCTTTC-AAAGCC
* *
816018 CACGAGTCAGTGGCACCCGTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
816046 CACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
** *
816074 CATGAGTTAGTGGCATCCTTTCAAAAGCC
1 CACAAGTCAGTGGCA-CCTTTC-AAAGCC
** *
816103 CATGAGTCAGTGGCACCCTTTCAAAACC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* *
816131 CATAAATCAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCACC-TTTCAAAGCC
*
816159 CACGAGTCAGTGGCATCCTTTTTCAAAGCC
1 CACAAGTCAGTGGCA-CC--TTTCAAAGCC
* *
816189 CATAAGTCAGTGGCAGCTTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
* * *
816217 CATAAATCAGTGGCATCTTTTCAAAGCC
1 CACAAGTCAGTGGCA-CCTTTCAAAGCC
816245 CACAAGTC-GATGGCAACCTCTTCTAAAGCC
1 CACAAGTCAG-TGGC-ACCT-TTC-AAAGCC
* * *
816275 TACCAAGGTCGGTGGCAACCCTTTTAAAGCC
1 CA-CAA-GTCAGTGGC-A-CCTTTCAAAGCC
816306 CACA
1 CACA
816310 CGAGTTGGTG
Statistics
Matches: 1136, Mismatches: 142, Indels: 92
0.83 0.10 0.07
Matches are distributed among these distances:
26 25 0.02
27 173 0.15
28 720 0.63
29 138 0.12
30 55 0.05
31 10 0.01
32 11 0.01
33 4 0.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (27 bp):
CACAAGTCAGTGGCACCTTTCAAAGCC
Found at i:815087 original size:56 final size:56
Alignment explanation
Indices: 814957--816309 Score: 1392
Period size: 56 Copynumber: 24.1 Consensus size: 56
814947 TTCAAAAGTT
* *
814957 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAACCCTTTTCAAAGTC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-A-CCTTTTCAAAGCC
* *
815015 CGCAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTTAGTGGCACCTTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACC-TTTTCAAAGCC
* *
815071 CACAAGTCAGTGGCA-CCCTTCAAAGCCCACAAGTCAATGGCACAC--TTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTTTTCAAAGCC
* * *
815125 CACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * * *
815181 CACAAGTTAGTGGCA-CCCTTCAGAA-CCCATAAGTCAGTGGCACCTTGT-AAAACC
1 CACAAGTCAGTGGCATCCTTTCA-AAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
** * * * * * *
815235 CATGAGTCAATGACATCTTTTCAAAGACCACAAGTAAGT-GCATCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * *
815290 CACAAGTTAATGGCATCCTTTCAAAGCCCACAAGTTAGTGG-ACC-CTTCGAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCC
* * *
815345 CACAAGTCAGTGGCACCCTTTCAAAGCCCACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * *
815401 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTT-GAA-CT
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* ** * *
815455 CACAAGTCAGTGGCACCCGTTTCAAAGCCCATGAGTTAGTGGCACCTTTTCAAAGGC
1 CACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * *
815512 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCT
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * ** * *
815568 CACAAGTTAGTGGCACCCTTTCAAAGCCAATGAGTTAGTGGCACCTTTTCAAAGGC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * **
815624 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTGAAAGTG
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * * *
815680 TACAAGTTAGTGGCACCCTTTCAAAGCCCACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * *
815736 CACGAGTTAGTGGCA-CCTTTTCAAAGCCCACGAGTAAGTGGCATCC-TTTCAAAGCC
1 CACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCC
* * * * *
815792 CACAAGTCAGTGGCATCCTTTCAAAGTCCATAAGTTAGTGGCACCCTTTGAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* ** **
815848 CACAAGTCAGTGGCACCCTTTGGAAGCCCATGAGTCAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
** * * * **
815904 CATGAGTCAGTGGCATCTTTTCAAAAACCCACGAGTCAGTGGCACCCGTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * ** * *
815961 CACGAGTTAGTGGCA-CCTTTTCAAAGCCCATGAGTCAGTGGCATCTTTTCAAAAACC
1 CACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCC
* * * * *
816018 CACGAGTCAGTGGCACCCGTTCAAAGCCCACGAGTTAGTGGCACCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
** * ** * *
816074 CATGAGTTAGTGGCATCCTTTCAAAAGCCCATGAGTCAGTGGCACCCTTTCAAAACC
1 CACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * *
816131 CATAAATCAGTGGCA-CCTTTTCAAAGCCCACGAGTCAGTGGCATCCTTTTTCAAAGCC
1 CACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-CC-TTTTCAAAGCC
* * * * * *
816189 CATAAGTCAGTGGCAGCTTTTCAAAGCCCATAAATCAGTGGCATCTTTTCAAAGCC
1 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * *
816245 CACAAGTC-GATGGCAACCTCTTCTAAAGCCTACCAAGGTCGGTGGCAACCCTTTT-AAAGCC
1 CACAAGTCAG-TGGCATCCT-TTC-AAAGCCCA-CAA-GTCAGTGGC-A-CCTTTTCAAAGCC
816306 CACA
1 CACA
816310 CGAGTTGGTG
Statistics
Matches: 1100, Mismatches: 159, Indels: 69
0.83 0.12 0.05
Matches are distributed among these distances:
54 69 0.06
55 184 0.17
56 559 0.51
57 194 0.18
58 68 0.06
59 3 0.00
60 7 0.01
61 11 0.01
62 5 0.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (56 bp):
CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
Found at i:816292 original size:32 final size:32
Alignment explanation
Indices: 816249--816337 Score: 96
Period size: 31 Copynumber: 2.9 Consensus size: 32
816239 AAAGCCCACA
*
816249 AGTCGATGGCAACCTCTTCTAAAGCCTACCAAG
1 AGTCGGTGGCAACCTCTTCTAAAGCCTA-CAAG
* * *
816282 -GTCGGTGGCAACC-CTTTTAAAGCCCACACG
1 AGTCGGTGGCAACCTCTTCTAAAGCCTACAAG
*
816312 AGTTGGTGGCAACCT-TTCTAAA-CCTA
1 AGTCGGTGGCAACCTCTTCTAAAGCCTA
816338 ATGTCGTTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
30 6 0.13
31 29 0.62
32 12 0.26
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (32 bp):
AGTCGGTGGCAACCTCTTCTAAAGCCTACAAG
Found at i:816320 original size:31 final size:30
Alignment explanation
Indices: 816233--816333 Score: 91
Period size: 31 Copynumber: 3.3 Consensus size: 30
816223 TCAGTGGCAT
*
816233 CTTTTCAAAGCCCACA-AGTCGATGGCAACC
1 CTTTT-AAAGCCCACACAGTCGGTGGCAACC
* *
816263 TCTTCTAAAGCCTAC-CAAGGTCGGTGGCAACC
1 -CTTTTAAAGCCCACAC-A-GTCGGTGGCAACC
*
816295 CTTTTAAAGCCCACACGAGTTGGTGGCAA-C
1 CTTTTAAAGCCCACAC-AGTCGGTGGCAACC
816325 CTTTCTAAA
1 CTTT-TAAA
816334 CCTAATGTCG
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
30 13 0.22
31 31 0.53
32 14 0.24
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (30 bp):
CTTTTAAAGCCCACACAGTCGGTGGCAACC
Found at i:817403 original size:30 final size:30
Alignment explanation
Indices: 817362--817435 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 30
817352 TGAACAGTAC
*
817362 ATGTATAGATACATTTTGTTTTTTACCCAG
1 ATGTATAGATACATTCTGTTTTTTACCCAG
*
817392 ATGTATCGATACATTCTGTTTTTTACCCAG
1 ATGTATAGATACATTCTGTTTTTTACCCAG
*
817422 ATGTATTGATACAT
1 ATGTATAGATACAT
817436 CTAGCTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.45
Consensus pattern (30 bp):
ATGTATAGATACATTCTGTTTTTTACCCAG
Found at i:825026 original size:52 final size:51
Alignment explanation
Indices: 824956--825090 Score: 137
Period size: 52 Copynumber: 2.6 Consensus size: 51
824946 CTTGGCAAAT
** * **
824956 GTGCCAATGTGCAAATTCAAGTCTTGCGACACTAGATTTAAAGATGATAA-A
1 GTGCCAATGTGCTGATTCAAG-CTAGCGACACTAGACCTAAAGATGATAAGA
* * * *
825007 GGTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGACCTAAAGATGATGAGA
1 -GTGCCAATGTGCTGATTC-AAGCTAGCGACACTAGACCTAAAGATGATAAGA
*
825060 GTGCCAATATGCTGATTCAAGGCTAGCGACA
1 GTGCCAATGTGCTGATTCAA-GCTAGCGACA
825091 TTGGGCTCTG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
51 2 0.03
52 63 0.91
53 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
GTGCCAATGTGCTGATTCAAGCTAGCGACACTAGACCTAAAGATGATAAGA
Found at i:825091 original size:52 final size:51
Alignment explanation
Indices: 824993--825933 Score: 525
Period size: 52 Copynumber: 17.9 Consensus size: 51
824983 GACACTAGAT
* * * * * *
824993 TTAAAGATGATAAAGGTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGAC
1 TTAAAGATGATAGA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
825045 CTAAAGATGATGAGAGTGCCAATATGCTGATTCAAGGCTAGCGACATTGGGC
1 TTAAAGATGAT-AGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
825097 TCTGGAAAGAAGGTTTTGACA-AGTGCCAATGTGCTGATT-AAGGCCCA-TGACATTGGAC
1 T-T--AAAG-A-----TGATAGAGTGCCAATATGCTGATTCAAGG-CCAGCGATATTGGAC
* * * **
825155 TTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAGGCCAGTGATATCAGAC
1 TTAAAGATGAT-AGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * * * * * *
825207 TTAAAGATAACAAAGGTGACAATACGCTGATTTAGGGCCAACGATATCGAAC
1 TTAAAGATGATAGA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * *
825259 TTTAAGATGATTAGGGTGCCAGTGTGTTGATTCAAAGCCA--GACT-TTGGAC
1 TTAAAGATGA-TAGAGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGAC
* * * * * *
825309 TTAAAGATGATGAGAGTGCTAATATACTGGTTCAAGGCCAACGACATTGGGC
1 TTAAAGATGAT-AGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * *
825361 TTCGGAAAAAAGGTTTTGACA-AGTGCCAATGTGCTGATT-AAGGCTAGCGACATTGGAC
1 TT------AAA-G--ATGATAGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
825419 TTAAAGATGGTAAGGGTGCCAATATGCTGATTCAAGGCCAACGATATCGGAC
1 TTAAAGATGAT-AGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * ** * ** * *
825471 TTAAAGATAATAAAGGTGCCAATACACTGATTTAAGGCCAATGATATCGAAC
1 TTAAAGATGATAGA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * *
825523 TTTAAGATGATTAGGGTGCCAATGTGCTGATTTAAGGCCAGTGACATTGGAC
1 TTAAAGATGA-TAGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * ** **
825575 TTAAAGATGACA-AGGATACTAATATGCTGATTCATGGCTAGAAATATCAGAC
1 TTAAAGATGATAGA-G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
825627 TTAAAGATAATAGAGATTCCAATATGCTGATTCAAGGCCAACAATATTGGAC
1 TTAAAGATGATAGAG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
825679 TTAAAGATAATAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTAGAC
1 TTAAAGATGATAGAG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
825731 TTAAAGATAATAAAGGTGCTAATATGCTGATTCAAGGCCAGCGATATTAGAC
1 TTAAAGATGATAGA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * * *
825783 TTAAAGATAATAAAGGTGCCAGTATACTGATTCAAGGCCAGCAATATCGGATT
1 TTAAAGATGATAGA-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA-C
* * * * *
825836 TTAAA-ATGATAAGGGTGCCAATGTACTGATTCAAGGCCAACGACATTGGAC
1 TTAAAGATGAT-AGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * * * * * *
825887 TTATAGATGACAAAAGGGACGATATGCTAATTCAAGGCCAGTGATAT
1 TTAAAGATGA-TAGAGTGCCAATATGCTGATTCAAGGCCAGCGATAT
825934 CAGGTTCAAA
Statistics
Matches: 691, Mismatches: 154, Indels: 88
0.74 0.17 0.09
Matches are distributed among these distances:
49 6 0.01
50 37 0.05
51 46 0.07
52 500 0.72
53 14 0.02
54 1 0.00
55 8 0.01
56 1 0.00
57 1 0.00
58 35 0.05
59 34 0.05
60 2 0.00
61 6 0.01
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (51 bp):
TTAAAGATGATAGAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:825519 original size:264 final size:265
Alignment explanation
Indices: 824996--825884 Score: 898
Period size: 264 Copynumber: 3.4 Consensus size: 265
824986 ACTAGATTTA
* * * *
824996 AAGATGATAAAGGTGCCAATGTGCTGATTCAAAGCTAGTGACATTGGACCTAAAGATGATGAGAG
1 AAGATGATTAGGGTGCCAATGTGCTGATTCAAAGCCAG-GACATTGGACTTAAAGATGATGAGAG
* * * *
825061 TGCCAATATGCTGATTCAAGGCTAGCGACATTGGGCTCTGGAAAGAAGGTTTTGACAAGTGCCAA
65 TGCCAATATACTGATTCAAGGCCAACGACATTGGGCTCTGGAAAAAAGGTTTTGACAAGTGCCAA
* *
825126 TGTGCTGATTAAGGCCCATGACATTGGACTTAAAGATGATAAGGGTGCCAATGTGCTGATTCAAG
130 TGTGCTGATTAAGGCCCACGACATTGGACTTAAAGATGATAAGGGTGCCAATATGCTGATTCAAG
** * *
825191 GCCAGTGATATCAGACTTAAAGATAACAAAGGTGACAATACGCTGATTTAGGGCCAACGATATCG
195 GCCAACGATATCAGACTTAAAGATAACAAAGGTGACAATACACTGATTTAAGGCCAACGATATCG
825256 AACTTT
260 AACTTT
* * *
825262 AAGATGATTAGGGTGCCAGTGTGTTGATTCAAAGCCA-GACTTTGGACTTAAAGATGATGAGAGT
1 AAGATGATTAGGGTGCCAATGTGCTGATTCAAAGCCAGGACATTGGACTTAAAGATGATGAGAGT
* *
825326 GCTAATATACTGGTTCAAGGCCAACGACATTGGGCT-TCGGAAAAAAGGTTTTGACAAGTGCCAA
66 GCCAATATACTGATTCAAGGCCAACGACATTGGGCTCT-GGAAAAAAGGTTTTGACAAGTGCCAA
* *
825390 TGTGCTGATTAAGG-CTAGCGACATTGGACTTAAAGATGGTAAGGGTGCCAATATGCTGATTCAA
130 TGTGCTGATTAAGGCCCA-CGACATTGGACTTAAAGATGATAAGGGTGCCAATATGCTGATTCAA
* * * *
825454 GGCCAACGATATCGGACTTAAAGATAATAAAGGTGCCAATACACTGATTTAAGGCCAATGATATC
194 GGCCAACGATATCAGACTTAAAGATAACAAAGGTGACAATACACTGATTTAAGGCCAACGATATC
825519 GAACTTT
259 GAACTTT
* * **
825526 AAGATGATTAGGGTGCCAATGTGCTGATTTAAGGCCAGTGACATTGGACTTAAAGATGACAAG-G
1 AAGATGATTAGGGTGCCAATGTGCTGATTCAAAGCCAG-GACATTGGACTTAAAGATGATGAGAG
* * * * * * * * * *
825590 ATACTAATATGCTGATTCATGG-CTA-GAAATATCAGACT-T--AAAGATAA----TAGA-GA-T
65 -TGCCAATATACTGATTCAAGGCCAACGACAT-T-GGGCTCTGGAAA-A-AAGGTTTTGACAAGT
* * * * * * * *
825644 TCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATAATAAAGATGCCAATATGCTGA
125 GCCAATGTGCTGATT-AAGGCCCACGACATTGGACTTAAAGATGATAAGGGTGCCAATATGCTGA
* * * ** * *
825709 TTCAAGGCCAGCGATATTAGACTTAAAGATAATAAAGGTG-CTAATATGCTGATTCAAGGCCAGC
189 TTCAAGGCCAACGATATCAGACTTAAAGATAACAAAGGTGAC-AATACACTGATTTAAGGCCAAC
* *
825773 GATAT-TAGACTTA
253 GATATCGA-ACTTT
* * * * * * * * * *
825786 AAGATAATAAAGGTGCCAGTATACTGATTCAAGGCCAGCA-ATATCGGATTTTAAA-ATGATAAG
1 AAGATGATTAGGGTGCCAATGTGCTGATTCAAAGCCAGGACAT-T-GGA-CTTAAAGATGATGAG
* *
825849 GGTGCCAATGTACTGATTCAAGGCCAACGACATTGG
63 AGTGCCAATATACTGATTCAAGGCCAACGACATTGG
825885 ACTTATAGAT
Statistics
Matches: 525, Mismatches: 79, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
258 2 0.00
259 18 0.03
260 161 0.31
261 14 0.03
262 4 0.01
263 6 0.01
264 240 0.46
265 6 0.01
266 74 0.14
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (265 bp):
AAGATGATTAGGGTGCCAATGTGCTGATTCAAAGCCAGGACATTGGACTTAAAGATGATGAGAGT
GCCAATATACTGATTCAAGGCCAACGACATTGGGCTCTGGAAAAAAGGTTTTGACAAGTGCCAAT
GTGCTGATTAAGGCCCACGACATTGGACTTAAAGATGATAAGGGTGCCAATATGCTGATTCAAGG
CCAACGATATCAGACTTAAAGATAACAAAGGTGACAATACACTGATTTAAGGCCAACGATATCGA
ACTTT
Found at i:825577 original size:156 final size:156
Alignment explanation
Indices: 825383--825896 Score: 636
Period size: 156 Copynumber: 3.3 Consensus size: 156
825373 GTTTTGACAA
* * *
825383 GTGCCAATGTGCTGATT-AAGGCTAGCGACATTGGACTTAAAGATGGTAAGGGTGCCAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCTAATATGCT
* * *
825447 GATTCAAGGCCAACGATATCGGACTTAAAGATAATAAAGGTGCCAATACACTGATTTAAGGCCAA
66 GATTCAAGGCCAACGATATCAGACTTAAAGATAATAAAGGTGCCAATATACTGATTCAAGGCCAA
** * *
825512 TGATATCGAACTTTAAGATGATTAGG
131 CAATATCGGACTTTAAGATGATAAGG
* * * * *
825538 GTGCCAATGTGCTGATTTAAGGCCAGTGACATTGGACTTAAAGATGACAAGGATACTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCTAATATGCT
* * * * * * *
825603 GATTCATGGCTAGA-AATATCAGACTTAAAGATAATAGAGATTCCAATATGCTGATTCAAGGCCA
66 GATTCAAGGCCA-ACGATATCAGACTTAAAGATAATAAAGGTGCCAATATACTGATTCAAGGCCA
* * * *
825667 ACAATATTGGACTTAAAGATAATAAAG
130 ACAATATCGGACTTTAAGATGATAAGG
* * * * * *
825694 ATGCCAATATGCTGATTCAAGGCCAGCGATATTAGACTTAAAGATAATAAAGGTGCTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCTAATATGCT
* * * *
825759 GATTCAAGGCCAGCGATATTAGACTTAAAGATAATAAAGGTGCCAGTATACTGATTCAAGGCCAG
66 GATTCAAGGCCAACGATATCAGACTTAAAGATAATAAAGGTGCCAATATACTGATTCAAGGCCAA
* *
825824 CAATATCGGATTTTAAAATGATAAGG
131 CAATATCGGACTTTAAGATGATAAGG
* * *
825850 GTGCCAATGTACTGATTCAAGGCCAACGACATTGGACTTATAGATGA
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA
825897 CAAAAGGGAC
Statistics
Matches: 295, Mismatches: 61, Indels: 5
0.82 0.17 0.01
Matches are distributed among these distances:
155 17 0.06
156 277 0.94
157 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (156 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATAAGGGTGCTAATATGCT
GATTCAAGGCCAACGATATCAGACTTAAAGATAATAAAGGTGCCAATATACTGATTCAAGGCCAA
CAATATCGGACTTTAAGATGATAAGG
Found at i:826106 original size:33 final size:33
Alignment explanation
Indices: 826030--826151 Score: 185
Period size: 33 Copynumber: 3.8 Consensus size: 33
826020 TCTTTTTCGG
* * * *
826030 TGCCACCAACTCGTGCGGGCTTTTGGAAA-GAT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCT
*
826062 TGTCACCAACTTGTGTGGGCTTTTGAAAAGGCT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCT
826095 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCT
826128 TGCCACCAACTTGTGTGGG-TTTTG
1 TGCCACCAACTTGTGTGGGCTTTTG
826152 GGAGGTTTGA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
32 30 0.36
33 53 0.64
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (33 bp):
TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCT
Found at i:826119 original size:65 final size:65
Alignment explanation
Indices: 826030--826151 Score: 183
Period size: 65 Copynumber: 1.9 Consensus size: 65
826020 TCTTTTTCGG
* *
826030 TGCCACCAACTCGTGCGGGCTTTTGGAAA-GATTGTCACCAACTTGTGTGGGCTTTTGAAAAGGC
1 TGCCACCAACTCGTGCGGGCTTTTGAAAAGGATTGCCACCAACTTGTGTGGG-TTTTGAAAAGGC
826094 T
65 T
* * *
826095 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGCTTGCCACCAACTTGTGTGGGTTTTG
1 TGCCACCAACTCGTGCGGGCTTTTGAAAAGGATTGCCACCAACTTGTGTGGGTTTTG
826152 GGAGGTTTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 31 0.61
66 20 0.39
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (65 bp):
TGCCACCAACTCGTGCGGGCTTTTGAAAAGGATTGCCACCAACTTGTGTGGGTTTTGAAAAGGCT
Found at i:831160 original size:42 final size:42
Alignment explanation
Indices: 831114--831223 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
831104 TTCTTCTCTC
* * **
831114 CTCCTCCTATCATCCCTTCTCTCTCTAGTATCTTTCCTATCT
1 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCCCCTATCT
*
831156 CTCCTCCCATCAT-CCTTCCTATCTCTACTATCTCCCCTATCT
1 CTCCTCCTATCATCCCTT-CTATCTCTACTATCTCCCCTATCT
* *
831198 CTCCTCTTATCATCCCTCCTATCTCT
1 CTCCTCCTATCATCCCTTCTATCTCT
831224 TCTTTCTCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 4 0.07
42 51 0.88
43 3 0.05
ACGTcount: A:0.13, C:0.45, G:0.01, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTTCTATCTCTACTATCTCCCCTATCT
Found at i:831174 original size:24 final size:22
Alignment explanation
Indices: 831147--831223 Score: 72
Period size: 24 Copynumber: 3.5 Consensus size: 22
831137 TCTAGTATCT
831147 TTCCTATCTCTCCTCCCATCATCC
1 TTCCTATCTCTCCT--CATCATCC
*
831171 TTCCTATCTCTACT-ATC-TCC
1 TTCCTATCTCTCCTCATCATCC
831191 --CCTATCTCTCCTCTTATCATCC
1 TTCCTATCTCTCCTC--ATCATCC
*
831213 CTCCTATCTCT
1 TTCCTATCTCT
831224 TCTTTCTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
18 11 0.24
20 3 0.07
21 6 0.13
22 3 0.07
24 22 0.49
ACGTcount: A:0.13, C:0.45, G:0.00, T:0.42
Consensus pattern (22 bp):
TTCCTATCTCTCCTCATCATCC
Found at i:832899 original size:32 final size:33
Alignment explanation
Indices: 832861--833017 Score: 174
Period size: 33 Copynumber: 4.7 Consensus size: 33
832851 GCTTTTTGGG
* * *
832861 TGCCACCAACTCATGCGAGCTTTTGGAAA-GGT
1 TGCCACCAACTTATGTGGGCTTTTGGAAAGGGT
* *
832893 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGGT
1 TGCCACCAACTTATGTGGGCTTTTGGAAAGGGT
* * * *
832926 TGCCACCCACTAATTTGTATGGGATTTTGG-AAGGGC
1 TGCCACCAACT--TATG--TGGGCTTTTGGAAAGGGT
*
832962 TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
1 TGCCACCAACTTATGTGGGCTTTTGGAAAGGGT
832995 TGCCACCAACTTATGTGGGCTTT
1 TGCCACCAACTTATGTGGGCTTT
833018 AAGAGTTTTG
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
32 34 0.33
33 40 0.38
34 3 0.03
35 3 0.03
36 15 0.14
37 9 0.09
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (33 bp):
TGCCACCAACTTATGTGGGCTTTTGGAAAGGGT
Found at i:832932 original size:33 final size:33
Alignment explanation
Indices: 832861--833017 Score: 174
Period size: 32 Copynumber: 4.7 Consensus size: 33
832851 GCTTTTTGGG
** * *
832861 TGCCACCAACTCATGCGAGCTTTTGGAAA-GGT
1 TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
*
832893 TGCCACCAACTTGTGTGGGCTTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
* * * *
832926 TGCCACCCACTAATTTGTATGGGATTTTGG-AAGGGC
1 TGCCA--C-C-AACTTGTGTGGGCTTTTGGAAAGGGT
832962 TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
*
832995 TGCCACCAACTTATGTGGGCTTT
1 TGCCACCAACTTGTGTGGGCTTT
833018 AAGAGTTTTG
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
32 40 0.38
33 36 0.35
34 1 0.01
35 1 0.01
36 11 0.11
37 15 0.14
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (33 bp):
TGCCACCAACTTGTGTGGGCTTTTGGAAAGGGT
Found at i:833283 original size:91 final size:89
Alignment explanation
Indices: 833127--833352 Score: 219
Period size: 91 Copynumber: 2.5 Consensus size: 89
833117 GGATGCCACG
* * * * ** * *
833127 GAGTTGTGGACTTTAAAAAGGGTGGCACGAAGTTGTGGAATTTTGAAAAGAGTTGCCACGAAGTT
1 GAGTTGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTCAAAAAGAGGTCCCACGAAGTT
833192 GTGGAC-TTCAGAAAAAGGGTGTC-AT
66 GTGGACATTCAG-AAAA-GGTG-CAAT
833217 AGAGTTGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTCAAGAAAG-GGTCCCAC-AGA
1 -GAGTTGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTCAA-AAAGAGGTCCCACGA-A
* *
833280 GTTGTGGACATTGAGAAGAGGTGCAAT
63 GTTGTGGACATTCAGAAAAGGTGCAAT
* *
833307 GAAGTTGTGGACTTT-TGAGAATAGGTGCCACAGAGTTGTGGACTTT
1 G-AGTTGTGGACTTTAT-A-AA-GGGTGCCACAAAGTTGTGGACTTT
833353 GAGAAGGGTA
Statistics
Matches: 115, Mismatches: 12, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
89 3 0.03
90 21 0.18
91 61 0.53
92 30 0.26
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.27
Consensus pattern (89 bp):
GAGTTGTGGACTTTATAAAGGGTGCCACAAAGTTGTGGACTTTCAAAAAGAGGTCCCACGAAGTT
GTGGACATTCAGAAAAGGTGCAAT
Found at i:833321 original size:61 final size:61
Alignment explanation
Indices: 833120--833358 Score: 224
Period size: 60 Copynumber: 4.0 Consensus size: 61
833110 TTTAAAAGGA
* * * *
833120 TGCCACGGAGTTGTGGACTTT-AA-AAAGGGTGGCAC-GAAGTTGTGGA-ATTTTGAAAAGAGT
1 TGCCACGAAGTTGTGGACTTTCAAGAAAGGGTGCCACAG-AGTTGTGGACA--TTGAGAAGAGG
* * * * *
833180 TGCCACGAAGTTGTGGAC-TTCAGAAAAAGGGTGTCATAGAGTTGTGGAC-TTTATAA-AGGG
1 TGCCACGAAGTTGTGGACTTTCA-AGAAAGGGTGCCACAGAGTTGTGGACATTGAGAAGA-GG
* *
833240 TGCCACAAAGTTGTGGACTTTCAAGAAAGGGTCCCACAGAGTTGTGGACATTGAGAAGAGG
1 TGCCACGAAGTTGTGGACTTTCAAGAAAGGGTGCCACAGAGTTGTGGACATTGAGAAGAGG
* * ** *
833301 TGCAATGAAGTTGTGGACTTTTGAGAATA-GGTGCCACAGAGTTGTGGACTTTGAGAAG
1 TGCCACGAAGTTGTGGACTTTCAAGAA-AGGGTGCCACAGAGTTGTGGACATTGAGAAG
833359 GGTACTCCAC
Statistics
Matches: 149, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
59 3 0.02
60 63 0.42
61 61 0.41
62 21 0.14
63 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (61 bp):
TGCCACGAAGTTGTGGACTTTCAAGAAAGGGTGCCACAGAGTTGTGGACATTGAGAAGAGG
Found at i:833333 original size:31 final size:30
Alignment explanation
Indices: 833120--833358 Score: 163
Period size: 31 Copynumber: 7.9 Consensus size: 30
833110 TTTAAAAGGA
* * *
833120 TGCCACGGAGTTGTGGACTTTAAAAAG-GG
1 TGCCACAGAGTTGTGGACTTTGAGAAGAGG
* * * *
833149 TGGCAC-GAAGTTGTGGAATTTTGAAAAGAGT
1 TGCCACAG-AGTTGTGG-ACTTTGAGAAGAGG
* *
833180 TGCCAC-GAAGTTGTGGAC-TTCAGAAAAAGGG
1 TGCCACAG-AGTTGTGGACTTTGAG-AAGA-GG
* * *
833211 TGTCATAGAGTTGTGGACTTT-ATAA-AGGG
1 TGCCACAGAGTTGTGGACTTTGAGAAGA-GG
* *
833240 TGCCACAAAGTTGTGGACTTTCAAGAA-AGGG
1 TGCCACAGAGTTGTGGACTTT-GAGAAGA-GG
* *
833271 TCCCACAGAGTTGTGGACATTGAGAAGAGG
1 TGCCACAGAGTTGTGGACTTTGAGAAGAGG
*
833301 TG-CA-ATGAAGTTGTGGACTTTTGAGAATAGG
1 TGCCACA-G-AGTTGTGGAC-TTTGAGAAGAGG
833332 TGCCACAGAGTTGTGGACTTTGAGAAG
1 TGCCACAGAGTTGTGGACTTTGAGAAG
833359 GGTACTCCAC
Statistics
Matches: 170, Mismatches: 25, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
28 2 0.01
29 41 0.24
30 40 0.24
31 80 0.47
32 6 0.04
33 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (30 bp):
TGCCACAGAGTTGTGGACTTTGAGAAGAGG
Found at i:840818 original size:28 final size:27
Alignment explanation
Indices: 840779--840855 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 27
840769 TTTTGGAGAT
* *
840779 AATAACGGGGTTGGAGTGTCCCC-TCGA
1 AATAATGGGGTTGGAGTATCCCCAT-GA
840806 AGATAATGGGGTTGGAGTATCCCCGATGA
1 A-ATAATGGGGTTGGAGTATCCCC-ATGA
*
840835 AATAATGAGGTTGGAGTATCC
1 AATAATGGGGTTGGAGTATCC
840856 TCGATTGTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
27 1 0.02
28 39 0.89
29 3 0.07
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (27 bp):
AATAATGGGGTTGGAGTATCCCCATGA
Found at i:840993 original size:51 final size:51
Alignment explanation
Indices: 840843--841063 Score: 223
Period size: 51 Copynumber: 4.3 Consensus size: 51
840833 GAAATAATGA
* * * * * *
840843 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTAGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTATGGAAAATTAGTG-TTTTAGAAATAAAACCGG
* * * * *
840895 AGTTGGAGTATCCCCAATTAAAGGAAAA-TCGATGTTTT-GAAAATAAAACTGG
1 GGTTGGAGTATCCCCGATT-ATGGAAAATTAG-TGTTTTAG-AAATAAAACCGG
*
840947 GGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGG
* * * *
840998 GGTTGGAGTATCCCCGATTAT-GAGAAATCAATATTTTAGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGGA-AAATTAGTGTTTTAGAAATAAAACCGG
*
841049 GGTTGGGGTATCCCC
1 GGTTGGAGTATCCCC
841064 TCGGAGGTAA
Statistics
Matches: 141, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
50 2 0.01
51 81 0.57
52 51 0.36
53 7 0.05
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGGAAAATTAGTGTTTTAGAAATAAAACCGG
Found at i:841087 original size:28 final size:27
Alignment explanation
Indices: 841046--841120 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
841036 GAAATAAAGC
* **
841046 CGGGGTTGGGGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGAGGA-GTAA
* *
841074 CGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGAGGAGTAA
841101 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
841121 TTGTGAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.17, C:0.21, G:0.39, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGGAGTAA
Found at i:841221 original size:51 final size:52
Alignment explanation
Indices: 841109--841226 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 52
841099 AACGGGGTTG
* * * *
841109 GAGTATCCCCGATTGTGAAAAATTAGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAAAATTAGTG-TTCTTGAAAATAAAATCAGAGTTA
841162 GAGTATCCCCGATTAT-AGAAAATTAGTG-TCTTGAAAATAAAATCAGAGTT-
1 GAGTATCCCCGATTATGA-AAAATTAGTGTTCTTGAAAATAAAATCAGAGTTA
*
841212 GGGATATCCCCGATT
1 GAG-TATCCCCGATT
841227 GCGGAGAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
50 2 0.03
51 30 0.52
52 1 0.02
53 25 0.43
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (52 bp):
GAGTATCCCCGATTATGAAAAATTAGTGTTCTTGAAAATAAAATCAGAGTTA
Found at i:843659 original size:13 final size:13
Alignment explanation
Indices: 843641--843673 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
843631 GCTTCCTAGT
*
843641 GATACATTGTATC
1 GATACAATGTATC
843654 GATACAATGTATC
1 GATACAATGTATC
843667 GATACAA
1 GATACAA
843674 CACTTATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
GATACAATGTATC
Found at i:843755 original size:21 final size:19
Alignment explanation
Indices: 843729--843805 Score: 73
Period size: 21 Copynumber: 3.7 Consensus size: 19
843719 GTTGGGACCC
843729 TGTATCGATACATTAGTAGAA
1 TGTATCGATACATTA-TA-AA
*
843750 TGTATCGATACATTCCACAAA
1 TGTATCGATACATT--ATAAA
* *
843771 TGTATTGATACATTCTACAAA
1 TGTATCGATACA-T-TATAAA
843792 TGTATCGATACATT
1 TGTATCGATACATT
843806 TGGATAAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 1 0.02
20 1 0.02
21 43 0.88
22 2 0.04
23 2 0.04
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATTATAAA
Found at i:844629 original size:55 final size:55
Alignment explanation
Indices: 844545--845813 Score: 1333
Period size: 61 Copynumber: 22.3 Consensus size: 55
844535 AAGTGTATCT
* * * *
844545 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
844600 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTG-GTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * * **
844654 TGCTCTTTGGGGACTCAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
844715 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* *
844770 TGCTCTTTGAAGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* ** *
844825 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
** *
844886 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
**
844947 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
845008 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* *
845063 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGATGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* **
845118 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
* ***
845179 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAAACATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
* **
845240 TGCTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAGGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCC
* *
845300 TGCTCTTTGAGGACTG-AAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
845354 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
*
845409 TGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
845464 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTATG-AA-------
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * **
845511 --CTCTTTGGGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
*
845570 TACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
845625 TGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTG-GTGGGCTTTGAAAGGTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
* * * **
845679 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCC
*
845740 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
845795 TGCTCTTTGAGGACTGAAA
1 TGCTCTTTGAGGACTGAAA
845814 AGCGGAAGGA
Statistics
Matches: 1074, Mismatches: 76, Indels: 128
0.84 0.06 0.10
Matches are distributed among these distances:
44 4 0.00
45 34 0.03
47 2 0.00
53 7 0.01
54 125 0.12
55 393 0.37
56 41 0.04
59 32 0.03
60 30 0.03
61 400 0.37
65 6 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
Found at i:844746 original size:61 final size:58
Alignment explanation
Indices: 844545--845813 Score: 1142
Period size: 55 Copynumber: 22.3 Consensus size: 58
844535 AAGTGTATCT
* * * *
844545 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAG--GCGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* **
844600 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTG-GTGGGCTTTG-AAAG--GTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * * *
844654 TGCTCTTTGGGGACTCAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
* **
844715 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * **
844770 TGCTCTTTGAAGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTG-AAAG--GTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* *
844825 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
*
844886 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
844947 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
* **
845008 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* *
845063 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTG-AAAGATG--TCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
*
845118 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
* *
845179 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAAACATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
* *
845240 TGCTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGAAA-AGGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--GA-AAAGAAGCATCC
* **
845300 TGCTCTTTGAGGACTG-AAGGCGCCACCAACTTGTGTGGGCTTT-AAAAG--GTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * **
845354 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAGAGGTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* **
845409 TGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTTG-AAAG--GTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * ** * **
845464 TGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTATG---A-ACTCTTTG
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* ** *** ** * * * ** ** *
845518 GGGACTGAAAGG--TGCCA----CCAAC-TCGTGTG-GGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTT-TGAA-AAGAAGCATCC
* **
845570 TACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG--GTGTCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * **
845625 TGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTG-GTGGGCTTTG-AAAG--GTGTCC
1 TGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
* * *
845679 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG---AAGCATCC
* ** *
845740 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAGAGGTGTCT
1 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
845795 TGCTCTTTGAGGACTGAAA
1 TGCTCTTTGAGGACTGAAA
845814 AGCGGAAGGA
Statistics
Matches: 1036, Mismatches: 114, Indels: 128
0.81 0.09 0.10
Matches are distributed among these distances:
46 3 0.00
47 5 0.00
48 4 0.00
51 3 0.00
52 9 0.01
53 11 0.01
54 127 0.12
55 389 0.38
56 36 0.03
57 13 0.01
58 14 0.01
59 33 0.03
60 25 0.02
61 359 0.35
63 2 0.00
64 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (58 bp):
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAGCATCC
Found at i:844872 original size:29 final size:29
Alignment explanation
Indices: 844791--844872 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 29
844781 GACTGGAAAA
844791 TGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGG
** *
844820 TGTCCTGC-TCTT-TG-GGGAC--TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTGAAAGG
844846 TGCCACCAACTTGTGTGGGCTTTGAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAA
844873 AGAAAAAGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
25 3 0.08
26 12 0.30
27 6 0.15
28 6 0.15
29 10 0.25
30 3 0.08
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (29 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:844989 original size:293 final size:288
Alignment explanation
Indices: 844545--845813 Score: 1780
Period size: 293 Copynumber: 4.5 Consensus size: 288
844535 AAGTGTATCT
* * * *
844545 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAG-----GCGTCCTGCT
1 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
* ** *
844604 CTTTGAGGACTGGAAA-ATGCCACCAACTTG-GTGGGCTTTGAAAG-GTGTCCTGCTCTTTGGGG
66 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGCATCCTGCTCTTTGAGG
* *
844666 ACTCAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTG
130 ACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTG
*
844731 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAAGACTGGAAAATGCCA
195 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCA
844796 CCAACTTGTGTGGGCTTTGAAAGGTGTCC
260 CCAACTTGTGTGGGCTTTGAAAGGTGTCC
* *
844825 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCT
1 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
*
844890 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTT
66 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG----AGCATCCTGCTCTTT
*
844955 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGG
126 GAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGG
845020 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAAT
191 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAAT
*
845085 GCCACCAACTTGTGTGGGCTTTGAAAGATGTCC
256 GCCACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
845118 TGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
1 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
* * *
845183 CTTTGAGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAAACATCCTGCTTTTT
66 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG----AGCATCCTGCTCTTT
* * *
845248 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGAAAAGGCATCCTGCTCTTTGAGG
126 GAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGG
* * * *
845312 ACTG-AAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGACT-GAAAGG
191 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAA-A
845375 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCC
255 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCC
* * * **
845409 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTTG-AAAG-----GTGTCCTGCT
1 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
* * *
845468 CTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGC--T--ATGA--A-----CTCTTTGGGG
66 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGCATCCTGCTCTTTGAGG
*
845521 ACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTG
130 ACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTG
*
845586 AAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGATTGGAAAATGCC
195 AAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCC
845650 ACCAACTTG-GTGGGCTTTGAAAGGTGTCC
259 ACCAACTTGTGTGGGCTTTGAAAGGTGTCC
*
845679 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
1 TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
** *
845744 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAGAGGTGTCTTGCTCTTTGAGG
66 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGA-GCATCCTGCTCTTTGAGG
845807 ACTGAAA
130 ACTGAAA
845814 AGCGGAAGGA
Statistics
Matches: 893, Mismatches: 57, Indels: 72
0.87 0.06 0.07
Matches are distributed among these distances:
269 39 0.04
270 87 0.10
271 66 0.07
272 6 0.01
274 1 0.00
275 4 0.00
276 40 0.04
278 4 0.00
280 43 0.05
281 4 0.00
283 1 0.00
285 42 0.05
286 52 0.06
287 10 0.01
288 4 0.00
290 10 0.01
291 121 0.14
292 30 0.03
293 329 0.37
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (288 bp):
TGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCT
CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAGCATCCTGCTCTTTGAGGA
CTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGA
AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCAC
CAACTTGTGTGGGCTTTGAAAGGTGTCC
Found at i:845534 original size:45 final size:45
Alignment explanation
Indices: 845466--845555 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
845456 AGGTGTCCTG
*
845466 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTATGAA
1 CTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTATGAA
* * *
845511 CTCTTTGGGGACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAA
1 CTCTTTGAGGACTGGAAA-ATGCCACCAACTCGTGTGGGCTATGAA
845556 AAGAAAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 4 0.10
45 36 0.90
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
CTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTATGAA
Found at i:845623 original size:216 final size:208
Alignment explanation
Indices: 845302--845725 Score: 627
Period size: 216 Copynumber: 2.0 Consensus size: 208
845292 AGGCATCCTG
* ** * *
845302 CTCTTTGAGGACTGAAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGGGGA
1 CTCTTTGAGGACTGAAGGCGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGA
*
845367 CTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAGTG
66 CTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
*
845432 CCACCAACTTATGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACT
131 CCACCAACTT-GGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACT
*
845496 TGTGTGGGCTATGAA
194 CGTGTGGGCTATGAA
* *
845511 CTCTTTGGGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCT
1 CTCTTTGAGGACTG-AAGGCGCCACCAACTCGTGTGGGCTTT-AAAAG-----GCATCCTACTCT
*
845576 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGATT
59 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACT
*
845640 GGAAAATGCCACCAACTTGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAAGTGCCA
123 GGAAAATGCCACCAACTTGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAGTGCCA
*
845705 CCAACTCGTGTGGGCTTTGAA
188 CCAACTCGTGTGGGCTATGAA
845726 AAGAAAAAGC
Statistics
Matches: 193, Mismatches: 13, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
209 13 0.07
210 25 0.13
211 5 0.03
214 5 0.03
215 58 0.30
216 85 0.44
217 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (208 bp):
CTCTTTGAGGACTGAAGGCGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGA
CTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAAATG
CCACCAACTTGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCG
TGTGGGCTATGAA
Done.